Query 031011
Match_columns 167
No_of_seqs 130 out of 715
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 1.6E-26 3.4E-31 185.2 11.1 124 9-134 2-126 (242)
2 KOG0439 VAMP-associated protei 99.9 1.8E-25 3.9E-30 180.5 14.9 132 5-138 4-138 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.1E-23 2.4E-28 152.0 10.7 91 10-101 2-93 (109)
4 PF14874 PapD-like: Flagellar- 98.7 2.6E-07 5.6E-12 65.8 10.8 70 8-77 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.5 0.0018 3.9E-08 47.5 10.3 109 10-131 2-119 (122)
6 PRK09926 putative chaperone pr 95.8 0.55 1.2E-05 39.0 14.2 118 8-134 25-152 (246)
7 PRK09918 putative fimbrial cha 95.8 0.15 3.3E-06 41.8 10.6 85 8-99 24-113 (230)
8 PRK15299 fimbrial chaperone pr 95.5 0.87 1.9E-05 37.3 14.0 114 8-134 22-143 (227)
9 PRK15249 fimbrial chaperone pr 95.3 0.25 5.4E-06 41.2 10.5 87 8-99 28-125 (253)
10 PF07610 DUF1573: Protein of u 95.1 0.098 2.1E-06 32.1 5.6 43 31-74 2-45 (45)
11 PRK15295 fimbrial assembly cha 94.7 0.47 1E-05 38.9 10.3 86 8-99 19-111 (226)
12 PRK15246 fimbrial assembly cha 94.6 0.84 1.8E-05 37.7 11.6 117 8-134 10-136 (233)
13 PRK11385 putativi pili assembl 94.4 0.94 2E-05 37.5 11.4 87 8-99 26-124 (236)
14 PRK15211 fimbrial chaperone pr 94.3 1.1 2.5E-05 36.8 11.6 86 8-99 22-113 (229)
15 PF14646 MYCBPAP: MYCBP-associ 94.1 0.29 6.4E-06 43.5 8.5 62 16-77 238-312 (426)
16 PRK15290 lfpB fimbrial chapero 93.7 1.8 3.9E-05 36.0 11.8 113 9-133 38-158 (243)
17 PRK15192 fimbrial chaperone Bc 93.5 1.8 3.9E-05 35.8 11.4 84 8-99 22-119 (234)
18 COG3121 FimC P pilus assembly 93.5 3.7 8.1E-05 33.8 14.0 115 8-134 27-148 (235)
19 PRK15218 fimbrial chaperone pr 93.1 4.3 9.3E-05 33.4 13.8 114 9-134 19-142 (226)
20 PRK15208 long polar fimbrial c 93.1 1.3 2.8E-05 36.3 9.9 86 8-99 21-112 (228)
21 PF11614 FixG_C: IG-like fold 93.0 0.4 8.8E-06 34.8 6.3 50 28-77 34-85 (118)
22 PRK15188 fimbrial chaperone pr 92.4 3.5 7.7E-05 34.0 11.7 115 8-134 27-147 (228)
23 PRK15195 fimbrial chaperone pr 91.8 2.7 5.9E-05 34.5 10.3 115 8-133 25-145 (229)
24 PRK15254 fimbrial chaperone pr 91.8 4.7 0.0001 33.4 11.8 87 8-99 16-110 (239)
25 PRK15224 pili assembly chapero 91.5 4.8 0.0001 33.4 11.5 82 10-99 30-118 (237)
26 PRK15274 putative periplasmic 90.7 7.4 0.00016 32.7 12.0 86 9-99 27-120 (257)
27 PRK15253 putative fimbrial ass 90.3 7.6 0.00017 32.2 11.7 85 9-99 34-128 (242)
28 PRK15233 putative fimbrial cha 89.3 11 0.00023 31.6 11.8 82 10-99 42-130 (246)
29 PF06280 DUF1034: Fn3-like dom 87.4 1.9 4E-05 31.0 5.5 53 25-77 8-81 (112)
30 PRK15285 putative fimbrial cha 87.2 16 0.00035 30.5 12.0 86 9-99 26-119 (250)
31 PF00927 Transglut_C: Transglu 81.9 8.1 0.00017 27.3 6.7 55 23-77 13-77 (107)
32 TIGR03079 CH4_NH3mon_ox_B meth 81.6 3.5 7.5E-05 36.5 5.4 55 23-77 280-355 (399)
33 PF10633 NPCBM_assoc: NPCBM-as 80.9 3.1 6.7E-05 27.9 4.0 54 24-77 4-61 (78)
34 PRK15308 putative fimbrial pro 80.3 32 0.0007 28.5 11.4 84 9-100 17-118 (234)
35 PF05506 DUF756: Domain of unk 76.3 11 0.00024 25.9 5.8 45 28-75 21-66 (89)
36 PF06030 DUF916: Bacterial pro 76.0 28 0.00061 25.7 8.2 30 17-46 19-48 (121)
37 smart00809 Alpha_adaptinC2 Ada 75.8 17 0.00037 25.2 6.7 52 25-76 18-73 (104)
38 PF11611 DUF4352: Domain of un 73.1 20 0.00042 25.4 6.6 53 24-76 35-101 (123)
39 TIGR02745 ccoG_rdxA_fixG cytoc 68.9 52 0.0011 29.7 9.6 68 26-95 347-416 (434)
40 PF12690 BsuPI: Intracellular 68.2 36 0.00078 23.4 6.8 22 28-49 3-24 (82)
41 PF05753 TRAP_beta: Translocon 66.7 56 0.0012 25.9 8.4 54 23-77 36-98 (181)
42 PF04744 Monooxygenase_B: Mono 65.8 26 0.00057 31.1 6.9 65 10-76 249-335 (381)
43 PF13473 Cupredoxin_1: Cupredo 63.9 47 0.001 23.2 7.7 52 11-74 31-82 (104)
44 PF03173 CHB_HEX: Putative car 62.1 6.9 0.00015 30.7 2.4 34 43-76 69-104 (164)
45 PF02753 PapD_C: Pili assembly 59.1 9.2 0.0002 24.8 2.3 43 31-73 1-44 (68)
46 PF00553 CBM_2: Cellulose bind 56.0 16 0.00034 25.8 3.3 50 27-76 15-84 (101)
47 PF07705 CARDB: CARDB; InterP 56.0 33 0.00072 23.0 4.8 54 24-77 18-72 (101)
48 PF02883 Alpha_adaptinC2: Adap 53.7 76 0.0016 22.3 7.6 73 24-96 23-100 (115)
49 smart00637 CBD_II CBD_II domai 47.7 77 0.0017 21.6 5.6 24 51-74 50-75 (92)
50 COG1470 Predicted membrane pro 47.0 2.4E+02 0.0052 26.1 10.8 87 7-97 379-469 (513)
51 TIGR03096 nitroso_cyanin nitro 41.7 1.4E+02 0.0031 22.6 6.7 38 28-73 70-107 (135)
52 PF13205 Big_5: Bacterial Ig-l 40.9 1.1E+02 0.0025 20.7 6.4 56 16-74 26-84 (107)
53 PF14796 AP3B1_C: Clathrin-ada 38.4 93 0.002 23.9 5.2 49 26-74 86-138 (145)
54 COG3121 FimC P pilus assembly 33.8 1.2E+02 0.0025 25.0 5.5 43 29-73 165-209 (235)
55 PF07233 DUF1425: Protein of u 33.2 1.7E+02 0.0036 20.4 7.4 46 24-69 23-75 (94)
56 PF06483 ChiC: Chitinase C; I 32.2 57 0.0012 26.1 3.2 21 57-77 123-144 (180)
57 PF09640 DUF2027: Domain of un 31.5 82 0.0018 24.8 4.0 66 28-100 19-84 (162)
58 PRK15249 fimbrial chaperone pr 31.3 1.2E+02 0.0026 25.2 5.2 43 29-72 176-219 (253)
59 PRK15295 fimbrial assembly cha 29.1 1.5E+02 0.0033 24.1 5.4 39 30-72 158-197 (226)
60 cd00407 Urease_beta Urease bet 28.8 97 0.0021 22.5 3.7 62 11-75 7-84 (101)
61 TIGR00192 urease_beta urease, 27.1 1E+02 0.0022 22.4 3.6 63 11-76 7-85 (101)
62 PF03168 LEA_2: Late embryogen 26.8 1.9E+02 0.0042 19.1 6.2 46 30-75 1-52 (101)
63 TIGR02656 cyanin_plasto plasto 26.7 2.2E+02 0.0048 19.7 5.5 59 9-73 11-75 (99)
64 PRK13202 ureB urease subunit b 26.5 1.1E+02 0.0024 22.4 3.6 30 11-42 7-36 (104)
65 PF00699 Urease_beta: Urease b 25.0 85 0.0018 22.8 2.8 62 12-76 7-84 (100)
66 PRK13203 ureB urease subunit b 25.0 1.2E+02 0.0025 22.1 3.5 28 12-42 8-35 (102)
67 PF10342 GPI-anchored: Ser-Thr 24.2 2.2E+02 0.0048 18.8 7.0 60 14-74 14-78 (93)
68 CHL00031 psbT photosystem II p 23.0 16 0.00034 21.2 -1.0 11 156-166 13-23 (33)
69 smart00605 CW CW domain. 22.4 1.2E+02 0.0025 20.9 3.1 23 29-51 57-80 (94)
70 PRK09926 putative chaperone pr 21.6 2.8E+02 0.006 22.8 5.7 43 29-73 173-217 (246)
71 PRK13204 ureB urease subunit b 21.6 1.5E+02 0.0032 23.3 3.7 63 11-76 30-108 (159)
72 PF00932 LTD: Lamin Tail Domai 21.4 99 0.0021 21.7 2.7 41 29-71 26-69 (116)
73 PF09478 CBM49: Carbohydrate b 21.4 2.6E+02 0.0057 18.6 5.4 22 27-48 19-41 (80)
74 cd04094 selB_III This family r 20.6 2.9E+02 0.0063 18.9 6.4 53 38-94 33-85 (97)
75 PRK11875 psbT photosystem II r 20.3 15 0.00033 21.0 -1.4 11 156-166 13-23 (31)
76 PF08402 TOBE_2: TOBE domain; 20.1 2.3E+02 0.005 17.5 6.3 64 10-73 1-68 (75)
77 COG3354 FlaG Putative archaeal 20.1 3.6E+02 0.0077 21.0 5.5 62 11-74 55-128 (154)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.6e-26 Score=185.16 Aligned_cols=124 Identities=36% Similarity=0.586 Sum_probs=108.4
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCC-CCCCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCK 87 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p-~~~~~~ 87 (167)
.|+++|.- .|..|+....++.+.|.|.+..+|+||||||+|+.|+||||.|+|+|++++.|.|++++..+.| +|.+|+
T Consensus 2 aveisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCr 80 (242)
T COG5066 2 AVEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCR 80 (242)
T ss_pred ceEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCcccc
Confidence 36677765 5656888888999999999999999999999999999999999999999999999999998887 789999
Q ss_pred CeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 88 DKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 88 dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
||||||+...+......++. ++|....+..+.++||||+|......
T Consensus 81 dKFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~is 126 (242)
T COG5066 81 DKFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEEIS 126 (242)
T ss_pred ceeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccccC
Confidence 99999999998865556664 78887777778999999999965543
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-25 Score=180.48 Aligned_cols=132 Identities=41% Similarity=0.625 Sum_probs=114.6
Q ss_pred CCCccEEEcC-CeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCC
Q 031011 5 GGNQLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPD 83 (167)
Q Consensus 5 ~~~~lL~v~P-~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~ 83 (167)
....+|.++| .+|.|..+...++.+.|+|+|+++.++|||||||+|++|+|||+.|+|.||+++.|.|.+++....|.+
T Consensus 4 ~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d 83 (218)
T KOG0439|consen 4 ETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPD 83 (218)
T ss_pred cccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchh
Confidence 4567899999 689999999888899999999999999999999999999999999999999999999999997666888
Q ss_pred CCCCCeEEEEEEEcCCCCCCCCCCcccccccC--CCcceEEEeEEEEcCCCCCCCCC
Q 031011 84 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDS--GKTIEECKLRVVYVSPSSAQGNL 138 (167)
Q Consensus 84 ~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~--~~~v~e~kL~~~f~~~~~~~~~~ 138 (167)
.+++|||+||++.++.+ +..++ .++|.... +....+.+++|.|..+..+....
T Consensus 84 ~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 84 FKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVV 138 (218)
T ss_pred hcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccc
Confidence 88999999999999876 33333 35666655 78889999999999988755433
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=1.1e-23 Score=152.03 Aligned_cols=91 Identities=40% Similarity=0.686 Sum_probs=76.2
Q ss_pred EEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCC
Q 031011 10 ISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKD 88 (167)
Q Consensus 10 L~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~d 88 (167)
|.++|. .|.|+++.++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|+||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 689997 79999999888999999999999999999999999999999999999999999999999997554433 2499
Q ss_pred eEEEEEEEcCCCC
Q 031011 89 KFLLQSTIVPSNT 101 (167)
Q Consensus 89 kF~V~s~~~~~~~ 101 (167)
||+|+++.++++.
T Consensus 81 kf~I~~~~~~~~~ 93 (109)
T PF00635_consen 81 KFLIQSIVVPDNA 93 (109)
T ss_dssp EEEEEEEEE-TT-
T ss_pred EEEEEEEEcCCCc
Confidence 9999999998764
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.72 E-value=2.6e-07 Score=65.81 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=61.1
Q ss_pred ccEEEcCCeEEEecc-CCceeEeEEEEEcCCCCeEEEEeccCC--CccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 8 QLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTS--PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
+.|.++|.+|.|-.- .+......|+|+|.+..+..|+++.-. ...|.|.|..|.|+||++..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999753 456678999999999999999998543 5789999999999999999999999953
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.51 E-value=0.0018 Score=47.51 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=71.4
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC---C------ccEEEeCCeeEECCCCeEEEEEEecCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS---P------KKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~ 80 (167)
|.++|..+.|+.. .....++|+|.++.++.+.++... . ..|.|.|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6789999999862 237899999999999999988664 1 2799999999999999999999 4432 32
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCC
Q 031011 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSP 131 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~ 131 (167)
+.+. ...|.+....+|...+..+ .+..-.....+.+++-|.+.
T Consensus 77 ~~~~--E~~yrl~~~~iP~~~~~~~------~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PIDR--ESLYRLSFREIPPSEAENE------SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SSS---EEEEEEEEEEESCCTTSS------SSSEEEEEEEEEEEEEEEET
T ss_pred CCCc--eEEEEEEEEEEeccccccc------ccceEEEEEEEEEEEEECch
Confidence 3332 3345555555554321000 01111234566777766654
No 6
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=95.84 E-value=0.55 Score=38.97 Aligned_cols=118 Identities=12% Similarity=0.205 Sum_probs=74.9
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCc----------cEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK----------KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
--|.++|..++|+.. ....+|+|.|.++.++.-.....+.+ -|.|-|+.--|+||+...|.|.....
T Consensus 25 A~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 457889999999863 23699999999998877666554321 39999999999999999999998753
Q ss_pred CCCCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 78 RESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 78 ~~~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
...|.|. .--|-+...++|+..+..+-. + +..=......+|++-|.+...+
T Consensus 102 ~~lP~Dr--ESlf~lnv~eIP~~~~~~~~~-~---~n~l~iair~~IKLFyRP~~l~ 152 (246)
T PRK09926 102 TALPKDR--ESVFWFNVLEVPPKPDAEKVA-N---QSLLQLAFRTRIKLFYRPDGLK 152 (246)
T ss_pred CCCCCCc--eEEEEEEeeecCCCCcccccc-c---cceEEEeeeeeEEEEEcCccCC
Confidence 1345442 233555555666531110000 0 0001223566777777666543
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=95.78 E-value=0.15 Score=41.80 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=61.2
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCC-----ccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
.-|.++|..+.|+..- ....++|+|.++.++.-....... .-|.|.|+.-.|+||+...|.|.+.. ..|.
T Consensus 24 a~v~l~~tRvi~~~~~---~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~ 98 (230)
T PRK09918 24 AGMVPETSVVIVEESD---GEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPL 98 (230)
T ss_pred eeEEEccEEEEEECCC---CeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCC
Confidence 3577888889998632 368999999999887666654322 35999999999999999999999874 2343
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031011 83 DMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~ 99 (167)
|. ..-|.+...++|+
T Consensus 99 dr--Es~f~l~v~~IP~ 113 (230)
T PRK09918 99 NT--EHLLRVSFEGVPP 113 (230)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 32 2335555556664
No 8
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=95.50 E-value=0.87 Score=37.27 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=74.3
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC--------CccEEEeCCeeEECCCCeEEEEEEecCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS--------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~ 79 (167)
.-|.++|..+.|+... ...+|+|.|.++.++.-...... ..-|.|-|+.--|+||+...|.|..... .
T Consensus 22 a~i~l~~TRvi~~~~~---~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~ 97 (227)
T PRK15299 22 AGINIGTTRVIFHGDA---KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-N 97 (227)
T ss_pred eeEEECceEEEEeCCC---cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-C
Confidence 4578889999998642 36899999999887655544322 1349999999999999999999998752 3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 80 SPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 80 ~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
.|.|. ..-|-+...++|+..+. +- +..=......||++.|.++.-+
T Consensus 98 lP~Dr--Eslf~lnv~eIP~~~~~-~~------~n~l~iavr~riKLfyRP~~l~ 143 (227)
T PRK15299 98 LPEDR--ESLYWLDIKSIPSSNPD-NK------HNTLMLAVKAEFKLIYRPKALT 143 (227)
T ss_pred CCCcc--eEEEEEEeEecCCCCcc-cc------cceEEEEEeeeeeEEEcccccC
Confidence 44442 33466666666653111 00 0001223566778888777654
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=95.34 E-value=0.25 Score=41.22 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=60.2
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCC-----------ccEEEeCCeeEECCCCeEEEEEEecC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----------KKYFVRPNTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----------~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 76 (167)
--|.++|..+.|+... ...+|+|.|.++.++.-...+.+. .-|.|-|+.--|+||+...|.|....
T Consensus 28 A~l~l~~TRviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 28 ASVTILGSRIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred eEEEeCceEEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcC
Confidence 4588899999997532 358999999998876655543221 13999999999999999999999874
Q ss_pred CCCCCCCCCCCCeEEEEEEEcCC
Q 031011 77 QRESPPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 77 ~~~~p~~~~~~dkF~V~s~~~~~ 99 (167)
....|.|. .--|-+...++|+
T Consensus 105 ~~~lP~DR--ESlf~lnv~eIP~ 125 (253)
T PRK15249 105 TKKLPQDR--ESVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCCc--eEEEEEEeeecCC
Confidence 22344442 2234444445554
No 10
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=95.14 E-value=0.098 Score=32.15 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=36.1
Q ss_pred EEEEcCCCCeE-EEEeccCCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 31 LKVINNTEHHV-AFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 31 l~L~N~s~~~v-aFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
.+++|.++.++ ..+|+|+ =+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence 57999999888 5566655 5889999999999999999999873
No 11
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=94.74 E-value=0.47 Score=38.94 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=59.2
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC-------CccEEEeCCeeEECCCCeEEEEEEecCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~ 80 (167)
--|.+++..+.|+... ...+++|.|.++.++.-...... ..-|.|-|+.--|+||+...|.|..... ..
T Consensus 19 A~i~l~~TRvI~~~~~---~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~L 94 (226)
T PRK15295 19 ASIVVGGTRLVFDGNN---DESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PL 94 (226)
T ss_pred ccEEeCceEEEEeCCC---ceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CC
Confidence 3578888889998632 36899999999886543332221 2259999999999999999999998642 33
Q ss_pred CCCCCCCCeEEEEEEEcCC
Q 031011 81 PPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~ 99 (167)
|.|. .--|-+....+|+
T Consensus 95 P~Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 95 PADR--ESMYWLNIKGIPS 111 (226)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 4432 2335555555555
No 12
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=94.64 E-value=0.84 Score=37.68 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=73.9
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCC----------ccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
--|.+++..+.|+.. ....+|+|.|.++.++.-....... .-|.|-|+.--|+||+...|.|.....
T Consensus 10 A~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~ 86 (233)
T PRK15246 10 AAVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSR 86 (233)
T ss_pred EEEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCC
Confidence 347888889999863 2369999999998875444422211 149999999999999999999998753
Q ss_pred CCCCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 78 RESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 78 ~~~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
...|.|. .--|-+....+|+..+..+ + .+..=......||++-|.+..-+
T Consensus 87 ~~LP~DR--ESlf~lnv~~IP~~~~~~~---~--~~~~l~iair~rIKlFyRP~~L~ 136 (233)
T PRK15246 87 QQLATDR--ESLFWLNIYQIPPVTQDIK---N--HPRKLVLPLRLRLKILIRPTGLK 136 (233)
T ss_pred CCCCCCc--eEEEEEEEEEcCCCCcccc---c--ccceEEEEeeeEEEEEECCcccC
Confidence 2344442 2346666666665311100 0 00001223566788888777654
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=94.41 E-value=0.94 Score=37.48 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=60.1
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccC------------CCccEEEeCCeeEECCCCeEEEEEEec
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT------------SPKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
.-|.+++..+.|+.. ....+++|.|.++++..=..+.. ...-|.|-|+.--|+||+...+.|...
T Consensus 26 A~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~ 102 (236)
T PRK11385 26 AGVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT 102 (236)
T ss_pred eeEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 457788888999853 23699999999998744333211 113499999999999999999999987
Q ss_pred CCCCCCCCCCCCCeEEEEEEEcCC
Q 031011 76 AQRESPPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 76 ~~~~~p~~~~~~dkF~V~s~~~~~ 99 (167)
.....|.|. ..-|-+....+|+
T Consensus 103 ~~~~LP~DR--ESlf~lnv~~IPp 124 (236)
T PRK11385 103 ESDILPVDR--ETLFELSIASVPS 124 (236)
T ss_pred CCCCCCCCc--eEEEEEEEEecCC
Confidence 522345442 2345555555665
No 14
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=94.28 E-value=1.1 Score=36.83 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC------CccEEEeCCeeEECCCCeEEEEEEecCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p 81 (167)
.-|.+++..+.|+.. ....+++|.|.++.++.-...... ..-|.|-|+.--|+||+...|.|..... ..|
T Consensus 22 A~v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP 97 (229)
T PRK15211 22 AAFVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALP 97 (229)
T ss_pred EEEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 347888888999853 236999999999887544333211 1249999999999999999999998753 344
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 031011 82 PDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 82 ~~~~~~dkF~V~s~~~~~ 99 (167)
.|. .--|-+....+|+
T Consensus 98 ~DR--ESlf~lnv~~IP~ 113 (229)
T PRK15211 98 KDR--ESLFWLNVQEIPP 113 (229)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 442 2345555555555
No 15
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.15 E-value=0.29 Score=43.53 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=52.3
Q ss_pred eEEEeccCCceeEeEEE-EEcCCCCeEEEEeccC------------CCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 16 ELKFIFELEKQGFCDLK-VINNTEHHVAFKVKTT------------SPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 16 ~L~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.|.|....+......|. |.|.+..-|-|.=+-- ...+|......|+|.||++..+.|++++.
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~ 312 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSR 312 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCC
Confidence 68898877776677777 9999999998874432 25789999999999999999999999985
No 16
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=93.65 E-value=1.8 Score=35.97 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=71.0
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCC-CeEEEEeccCC---C----ccEEEeCCeeEECCCCeEEEEEEecCCCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS---P----KKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~---p----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~ 80 (167)
-|.+++..+.|+.. ....+++|+|.++ .+..-.....+ . .-|.|-|+.--|+||+...|.|........
T Consensus 38 gv~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~L 114 (243)
T PRK15290 38 GVVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSL 114 (243)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCC
Confidence 47888888999853 2368999999985 56665554431 1 149999999999999999999998753234
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCC
Q 031011 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~ 133 (167)
|.|. ..-|-+...++|+..+..+ .+ .=......++++-|.+..-
T Consensus 115 P~DR--ESlf~lnv~eIPp~~~~~~--~n-----~L~iair~rIKlFyRP~~L 158 (243)
T PRK15290 115 PDDR--ESVFWLNIKNIPPSASNKA--TN-----SLEIAVKTRIKLFWRPASI 158 (243)
T ss_pred CCCe--eEEEEEEEEEcCCCCcccc--cc-----eEEEEEEEeeeEEEecccc
Confidence 5442 2345555555665211000 00 0112345667777766654
No 17
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=93.49 E-value=1.8 Score=35.81 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=59.6
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccC----------C----CccEEEeCCeeEECCCCeEEEEEE
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT----------S----PKKYFVRPNTGVVQPWDSCIIRVT 73 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VrP~~GiI~Pg~s~~I~V~ 73 (167)
.-|.++...+.|+.. ....+++|.|.++.+ |=|++. . ..-|.|-|+.--|+||+...+.|.
T Consensus 22 Agi~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~ 96 (234)
T PRK15192 22 AGVVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV 96 (234)
T ss_pred eeEEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence 347788888999863 236899999999886 555552 1 124999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCeEEEEEEEcCC
Q 031011 74 LQAQRESPPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 74 l~~~~~~p~~~~~~dkF~V~s~~~~~ 99 (167)
.... ..|.|. .--|-+....+|+
T Consensus 97 ~~~~-~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 97 YTGA-PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred ECCC-CCCCcc--eEEEEEEEEecCC
Confidence 8753 345442 2345555556665
No 18
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.46 E-value=3.7 Score=33.78 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=78.7
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC-------CccEEEeCCeeEECCCCeEEEEEEecCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~ 80 (167)
--+.+++..++|+... ....++|.|.++.++.-.+..-+ ..-|.|-|+.-.|+||+...|.|.+.+. ..
T Consensus 27 A~v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~l 102 (235)
T COG3121 27 AGVVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KL 102 (235)
T ss_pred eeEEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CC
Confidence 3467788888998643 36899999988999988866542 4559999999999999999999999985 44
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
|.|. ..-|-+..-++|+... +.... ..-.....+++++-|.+....
T Consensus 103 P~dr--Eslf~lnv~eIPp~~~--~~~~~----n~lq~a~r~riKlf~RP~~l~ 148 (235)
T COG3121 103 PADR--ESLFRLNVDEIPPKSK--DDKGP----NVLQLALRSRIKLFYRPAGLA 148 (235)
T ss_pred CCCc--eeEEEEEeeecCCCCc--ccCCc----ceEEEEeeeeeeEEECcccCC
Confidence 5553 4566666666765321 11000 000233566777777766644
No 19
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=93.08 E-value=4.3 Score=33.37 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=70.2
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCC----------ccEEEeCCeeEECCCCeEEEEEEecCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~ 78 (167)
-|.++-..+.|+.. ....+++|.|.++.+..-....... .-|-|-|+.-.|+||+...+.|.....
T Consensus 19 gi~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 94 (226)
T PRK15218 19 GIYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN- 94 (226)
T ss_pred eEEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 35666667888752 2368999999998864333322221 159999999999999999999998753
Q ss_pred CCCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 79 ESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 79 ~~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
..|.|. .--|-+....+|+..+..+- .+ .=......|+++-|.+..-+
T Consensus 95 ~LP~DR--ESlfwlnv~~IPp~~~~~~~-~n-----~L~iairtrIKLfYRP~~L~ 142 (226)
T PRK15218 95 NLPGDR--ESLFYLNVLDIPPNSDENKD-KN-----IIKFALQNRIKLIYRPPGVQ 142 (226)
T ss_pred CCCcce--eEEEEEEEEEcCCCCCCcCc-Cc-----EEEEEeeeEEEEEEcccccc
Confidence 445442 23455666666653211000 00 01223566777777766643
No 20
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=93.07 E-value=1.3 Score=36.31 Aligned_cols=86 Identities=10% Similarity=0.203 Sum_probs=57.4
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccC--CC---ccEEEeCCeeEECCCCeEEEEEEecCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--SP---KKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~p---~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p 81 (167)
.-|.++|..+.|+.. ....+++|.|.+++ ++....... .. .-|.|-|+.--|+||+...|.|..... ..|
T Consensus 21 agv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP 96 (228)
T PRK15208 21 GGVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLP 96 (228)
T ss_pred ccEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCC
Confidence 458889999999863 23689999999863 443332221 11 239999999999999999999987642 334
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 031011 82 PDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 82 ~~~~~~dkF~V~s~~~~~ 99 (167)
.|. .--|.+..-.+|+
T Consensus 97 ~Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 97 QDR--ESVYWINVKAIPA 112 (228)
T ss_pred CCe--eEEEEEEEEEcCC
Confidence 442 2235555555554
No 21
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.05 E-value=0.4 Score=34.81 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEEE-eCCee-EECCCCeEEEEEEecCC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTG-VVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G-iI~Pg~s~~I~V~l~~~ 77 (167)
..+|+|.|.++++..|.|+...+..+.+ .|... -|.||+...+.|.+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 6899999999999999999998889998 66455 59999999988887653
No 22
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=92.42 E-value=3.5 Score=33.96 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=70.9
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEecc--CC---CccEEEeCCeeEECCCCeEEEEEEecCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKT--TS---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT--T~---p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p 81 (167)
.-+.+++..+.|+.. ....+++|+|.+++ +..-.... .+ ..-|.|-|+.--|+||+...+.|..... ..|
T Consensus 27 Agi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP 102 (228)
T PRK15188 27 GGIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLP 102 (228)
T ss_pred ceEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 347788888999863 23689999999864 44333222 11 1249999999999999999999998753 344
Q ss_pred CCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 82 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 82 ~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
.|. .--|-+....+|+..+. +. .+..=......+|++-|.+..-+
T Consensus 103 ~DR--ESlf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~~l~ 147 (228)
T PRK15188 103 TDR--ESVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPKNLA 147 (228)
T ss_pred CCc--eEEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCccCC
Confidence 442 23455555556653111 00 00001223566777777766654
No 23
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=91.81 E-value=2.7 Score=34.51 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=67.7
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccC--C---CccEEEeCCeeEECCCCeEEEEEEecCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--S---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~---p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p 81 (167)
.-+.+++..+.|+... ....++|.|.+++ +..-...+. + ..-|.|-|+.--|+||+...|.|..... ..|
T Consensus 25 Agi~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP 100 (229)
T PRK15195 25 GGIALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLA 100 (229)
T ss_pred eeEEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 3578888889998532 2589999999864 343221111 1 1359999999999999999999998742 334
Q ss_pred CCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCC
Q 031011 82 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (167)
Q Consensus 82 ~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~ 133 (167)
.|. ..-|-+....+|+..+. ... .+..=......+|++-|.+...
T Consensus 101 ~Dr--ESlf~Lnv~eIP~~~~~-~~~----~~n~l~iair~~iKlFyRP~~l 145 (229)
T PRK15195 101 ADR--ESLFWMNVKAIPSVDKN-ALE----GRNVLQLAILSRIKLFVRPINL 145 (229)
T ss_pred CCe--eEEEEEEeeecCCCCcc-ccc----ccceEEEEEEeEEEEEEccccc
Confidence 432 22355544555542110 000 0000122356677777766554
No 24
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=91.81 E-value=4.7 Score=33.45 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCC-CeEEEEeccCC-----CccEEEeCCeeEECCCCeEEEEEEecC--CCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQA--QRE 79 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~-----p~~Y~VrP~~GiI~Pg~s~~I~V~l~~--~~~ 79 (167)
--+.+++..+.|+.. ....+++|.|.++ .++.-...... ..-|.|-|+.--|+||+...|.|.... ...
T Consensus 16 A~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~ 92 (239)
T PRK15254 16 AAVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDK 92 (239)
T ss_pred EeEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCC
Confidence 457788889999853 2368999999885 46544333211 125999999999999999999999763 223
Q ss_pred CCCCCCCCCeEEEEEEEcCC
Q 031011 80 SPPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 80 ~p~~~~~~dkF~V~s~~~~~ 99 (167)
.|.|. ..-|-+....+|+
T Consensus 93 lP~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 93 LPQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCCCc--eEEEEEEEEEcCC
Confidence 44442 2345555555554
No 25
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=91.50 E-value=4.8 Score=33.38 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=56.3
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEecc----CC---CccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT----TS---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
|.++-..+.|+.. .-..+|+|.|.++.+ |-|++ .+ ..-|.|-|+.--|+|++...+.|..... ..|.
T Consensus 30 v~l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~ 103 (237)
T PRK15224 30 VKLGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 103 (237)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4555567888752 236899999999876 55554 11 1249999999999999999999998742 4454
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031011 83 DMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~ 99 (167)
|. .--|-+....+|+
T Consensus 104 DR--ESlFwlnv~~IPp 118 (237)
T PRK15224 104 DR--ETLQWVCIKAVPP 118 (237)
T ss_pred ce--eEEEEEEEEEcCC
Confidence 42 2335555555665
No 26
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=90.70 E-value=7.4 Score=32.67 Aligned_cols=86 Identities=12% Similarity=0.134 Sum_probs=56.9
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccCCC------ccEEEeCCeeEECCCCeEEEEEEecC-CCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP------KKYFVRPNTGVVQPWDSCIIRVTLQA-QRES 80 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p------~~Y~VrP~~GiI~Pg~s~~I~V~l~~-~~~~ 80 (167)
-|.++-..+.|+.. ....+|+|.|.++. ++.-....... .-|.|-|+.--|+||+...|.|...+ ....
T Consensus 27 gi~l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~L 103 (257)
T PRK15274 27 AIVPDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASL 103 (257)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 35556667888752 23689999999865 55433322211 24999999999999999999999875 2344
Q ss_pred CCCCCCCCeEEEEEEEcCC
Q 031011 81 PPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~ 99 (167)
|.|. .--|-+....+|+
T Consensus 104 P~DR--ESlFwlNv~eIPp 120 (257)
T PRK15274 104 PQDR--ESLFYFNVREIPP 120 (257)
T ss_pred CCce--eEEEEEEEEEcCC
Confidence 5442 2335555555665
No 27
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=90.28 E-value=7.6 Score=32.24 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=56.7
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCC----------ccEEEeCCeeEECCCCeEEEEEEecCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~ 78 (167)
-|.++-..+.|+.. ....+++|.|.++.+..-.....+. .-|.|-|+.--|+||+...|.|.....
T Consensus 34 gv~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 109 (242)
T PRK15253 34 GIVIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN- 109 (242)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 45566667888753 2368999999998864433322211 249999999999999999999997653
Q ss_pred CCCCCCCCCCeEEEEEEEcCC
Q 031011 79 ESPPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 79 ~~p~~~~~~dkF~V~s~~~~~ 99 (167)
..|.|. .--|-+....+|+
T Consensus 110 ~LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 110 SLPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCCcce--eEEEEEEEEEcCC
Confidence 344442 2335555555665
No 28
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=89.30 E-value=11 Score=31.55 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEecc--C--C---CccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT--T--S---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T--~---p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
|.++-..+.|+... ...+|+|.|.++.+ |-|++ . + ..-|.|-|+.--|+||+...+.|..... ..|.
T Consensus 42 i~l~~TRvIy~~~~---~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~ 115 (246)
T PRK15233 42 LRLGTTRVIYKEDA---PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNK 115 (246)
T ss_pred EEeCceEEEEeCCC---cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCc
Confidence 44555567776432 36899999988777 44443 1 1 1249999999999999999999998753 3454
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031011 83 DMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~ 99 (167)
|. .--|-+....+|+
T Consensus 116 DR--ESlfwlnv~~IPp 130 (246)
T PRK15233 116 NE--ESLYWLCVKGVPP 130 (246)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 42 2235555555665
No 29
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.43 E-value=1.9 Score=31.01 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=32.8
Q ss_pred ceeEeEEEEEcCCCCeEEEEeccCC--------CccEEE-------------eCCeeEECCCCeEEEEEEecCC
Q 031011 25 KQGFCDLKVINNTEHHVAFKVKTTS--------PKKYFV-------------RPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 25 ~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~V-------------rP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
...+..|+|+|.+++.+.|++.-.. .+.|.. .|..=.|+||++..|.|++.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3467899999999999999987551 122221 1223358899999999998873
No 30
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=87.19 E-value=16 Score=30.46 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEecc--CCCc----cEEEeCCeeEECCCCeEEEEEEecC-CCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKT--TSPK----KYFVRPNTGVVQPWDSCIIRVTLQA-QRES 80 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT--T~p~----~Y~VrP~~GiI~Pg~s~~I~V~l~~-~~~~ 80 (167)
-+.++-..+.|+.. ....+++|+|.++. ++.-.... .+.+ -|.|-|+.--|+||+...+.|.... ....
T Consensus 26 gv~l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~L 102 (250)
T PRK15285 26 AIAPDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASL 102 (250)
T ss_pred eEEeCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 45556667888752 23689999999865 54333221 1211 3999999999999999999999775 2234
Q ss_pred CCCCCCCCeEEEEEEEcCC
Q 031011 81 PPDMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~ 99 (167)
|.|. .--|-+....+|+
T Consensus 103 P~DR--ESlfwlnv~~IPp 119 (250)
T PRK15285 103 PQDR--ETLFYYNVREIPP 119 (250)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 4442 2335555555555
No 31
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=81.87 E-value=8.1 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCceeEeEEEEEcCCCCe--------EEEEeccCCCc--cEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 23 LEKQGFCDLKVINNTEHH--------VAFKVKTTSPK--KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.++.....++++|+++.+ .++-|-=|.-- ....+-..+-|.||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 466788999999999877 56666655543 36778889999999999999999875
No 32
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=81.57 E-value=3.5 Score=36.53 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCceeEeEEEEEcCCCCeEEEEeccCCCc-------cEEEeCCee--------------EECCCCeEEEEEEecCC
Q 031011 23 LEKQGFCDLKVINNTEHHVAFKVKTTSPK-------KYFVRPNTG--------------VVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p~-------~Y~VrP~~G--------------iI~Pg~s~~I~V~l~~~ 77 (167)
+++..+-++++||.++++|-.+==+|++- .|...|... =|.|||+.+|.|..|..
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 46778899999999999987764455443 333444332 28999999999998864
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=80.90 E-value=3.1 Score=27.88 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=32.3
Q ss_pred CceeEeEEEEEcCCCCeE-EEEeccCCCccEE--EeCCee-EECCCCeEEEEEEecCC
Q 031011 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYF--VRPNTG-VVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VrP~~G-iI~Pg~s~~I~V~l~~~ 77 (167)
+...+-.++++|.+..++ ..++.-..|.-.. +.|... -|+||++..+.+.+.+.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 455678899999987553 3455555577766 555443 79999999999999874
No 34
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=80.27 E-value=32 Score=28.48 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=61.2
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEecc---CC---------------CccEEEeCCeeEECCCCeEEE
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT---TS---------------PKKYFVRPNTGVVQPWDSCII 70 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~---------------p~~Y~VrP~~GiI~Pg~s~~I 70 (167)
-|.|.|-.+.+... .+....++|.|.++++..++|+. ++ ...-.+.|..-.|.||++..|
T Consensus 17 ~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 47788887777642 13368999999999888776642 12 224778899999999999999
Q ss_pred EEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 71 RVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 71 ~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
.+..+.. + + ...-|.|...++++.
T Consensus 95 Rli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 95 RVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 9887652 2 2 345688888888753
No 35
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=76.34 E-value=11 Score=25.90 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=33.1
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEE-EeCCeeEECCCCeEEEEEEec
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYF-VRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~-VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
.-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+.+-+.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEeec
Confidence 5789999999999999999732 22 234444567799888888773
No 36
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=75.98 E-value=28 Score=25.71 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=23.7
Q ss_pred EEEeccCCceeEeEEEEEcCCCCeEEEEec
Q 031011 17 LKFIFELEKQGFCDLKVINNTEHHVAFKVK 46 (167)
Q Consensus 17 L~F~~~~~~~~~~~l~L~N~s~~~vaFKVK 46 (167)
..+...++....-.++|+|.+++.+.|+|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 334455667778899999999999999986
No 37
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=75.83 E-value=17 Score=25.20 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=38.7
Q ss_pred ceeEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCCCeEEEEEEecC
Q 031011 25 KQGFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPWDSCIIRVTLQA 76 (167)
Q Consensus 25 ~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg~s~~I~V~l~~ 76 (167)
....-.+...|.+..++ .|.++-..|+-+.++ |..| .|+||+.+...+.+..
T Consensus 18 ~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 18 GLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 45678888899998888 488887777777665 5544 7999987766666655
No 38
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=73.11 E-value=20 Score=25.37 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=33.7
Q ss_pred CceeEeEEEEEcCCCCeEE-----EEeccCCCccEEEeC---------CeeEECCCCeEEEEEEecC
Q 031011 24 EKQGFCDLKVINNTEHHVA-----FKVKTTSPKKYFVRP---------NTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VrP---------~~GiI~Pg~s~~I~V~l~~ 76 (167)
++-..-.++++|.++.++. |++.+.+...|.... ..+-|.||+++.-.+....
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 3456788999999998876 788877777777554 4589999999998888765
No 39
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=68.89 E-value=52 Score=29.70 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=45.6
Q ss_pred eeEeEEEEEcCCCCeEEEEeccCCCccEEEe-C-CeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEEE
Q 031011 26 QGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-P-NTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQST 95 (167)
Q Consensus 26 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P-~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~ 95 (167)
.-..+++|.|.+.++..|.++........+. + +.=.|+||+..++.|.+........ ...+.|.+...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~ 416 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAY 416 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEE
Confidence 3468999999999999998887765444443 2 3458999999988888765322221 23455555443
No 40
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=68.18 E-value=36 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=13.2
Q ss_pred EeEEEEEcCCCCeEEEEeccCC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTS 49 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~ 49 (167)
.-.|+|+|.+++++-+...|.-
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq 24 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQ 24 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS-
T ss_pred EEEEEEEeCCCCeEEEEeCCCC
Confidence 4567788888877777665543
No 41
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.66 E-value=56 Score=25.92 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=41.3
Q ss_pred CCceeEeEEEEEcCCCCeEEEEeccCC----CccEEEeC-----CeeEECCCCeEEEEEEecCC
Q 031011 23 LEKQGFCDLKVINNTEHHVAFKVKTTS----PKKYFVRP-----NTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~vaFKVKTT~----p~~Y~VrP-----~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.++..+..++|.|.++. -||.|+-++ ++.|.+.- ....|+||+++.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 36678899999999988 689999887 35555432 24678899988888888774
No 42
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=65.82 E-value=26 Score=31.10 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=41.6
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccE----------------------EEeCCeeEECCCCe
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKY----------------------FVRPNTGVVQPWDS 67 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~GiI~Pg~s 67 (167)
+.++-.+-+|.- +++..+-+++++|.++++|-..==+|++-+| .|.|+ +=|.|||+
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 555555666754 4677899999999999998776545544443 23333 35899999
Q ss_pred EEEEEEecC
Q 031011 68 CIIRVTLQA 76 (167)
Q Consensus 68 ~~I~V~l~~ 76 (167)
.++.|..+.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999875
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=63.88 E-value=47 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=33.2
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
.++|+++..+. ++ ...|+++|.++....|.+..-. -...|.||++..+.++-
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~~~--------~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPDLG--------ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGGGT--------EEEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECCCc--------eEEEECCCCEEEEEEcC
Confidence 45677766653 33 3569999999998888888711 12679999999888853
No 44
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=62.11 E-value=6.9 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.0
Q ss_pred EEeccCCCccEEEeCCeeE--ECCCCeEEEEEEecC
Q 031011 43 FKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTLQA 76 (167)
Q Consensus 43 FKVKTT~p~~Y~VrP~~Gi--I~Pg~s~~I~V~l~~ 76 (167)
|+|.-=+-+.|++.|.-|+ |.||++..|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6777777888999999998 899999999998655
No 45
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=59.11 E-value=9.2 Score=24.79 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEEEcCCCCeEEEE-eccCCCccEEEeCCeeEECCCCeEEEEEE
Q 031011 31 LKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (167)
Q Consensus 31 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~ 73 (167)
|+++|+|...+.|- ++....++=.--...+.|+|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999876 44443443333344459999998776554
No 46
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=56.00 E-value=16 Score=25.83 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=32.5
Q ss_pred eEeEEEEEcCCCCeE-EEEeccCCC-----------------ccEEEeCCe--eEECCCCeEEEEEEecC
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTTSP-----------------KKYFVRPNT--GVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p-----------------~~Y~VrP~~--GiI~Pg~s~~I~V~l~~ 76 (167)
....|+|+|.++.++ .++|.=+-| ..|.|+|.. +.|+||+++.+-+....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 356788888887765 244433222 457887654 68999988877666544
No 47
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=55.95 E-value=33 Score=22.95 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=34.3
Q ss_pred CceeEeEEEEEcCCCCe-EEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 24 EKQGFCDLKVINNTEHH-VAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
++..+-.++|+|.+... =.|+|+-...+.-.-.-..+-|.||++..+.+.+.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 56678899999997654 3566654333333333334789999999999998874
No 48
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=53.72 E-value=76 Score=22.34 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=40.9
Q ss_pred CceeEeEEEEEcCCCCeEE-EEeccCCCc--cEEEeCC-eeEECCCCeEEEEEEecC-CCCCCCCCCCCCeEEEEEEE
Q 031011 24 EKQGFCDLKVINNTEHHVA-FKVKTTSPK--KYFVRPN-TGVVQPWDSCIIRVTLQA-QRESPPDMQCKDKFLLQSTI 96 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~--~Y~VrP~-~GiI~Pg~s~~I~V~l~~-~~~~p~~~~~~dkF~V~s~~ 96 (167)
+...+-.+...|.+..++. |.++-..|+ ...+.|. ...|+|+..+.-.+.+.. ....+.....+=|+.|.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~ 100 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNV 100 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEE
Confidence 4566788888999988774 666655555 4555566 559999987775555444 11111122234456666654
No 49
>smart00637 CBD_II CBD_II domain.
Probab=47.66 E-value=77 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=17.4
Q ss_pred ccEEEeCCe--eEECCCCeEEEEEEe
Q 031011 51 KKYFVRPNT--GVVQPWDSCIIRVTL 74 (167)
Q Consensus 51 ~~Y~VrP~~--GiI~Pg~s~~I~V~l 74 (167)
..|.++|.. +.|+||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888644 789999887766555
No 50
>COG1470 Predicted membrane protein [Function unknown]
Probab=46.95 E-value=2.4e+02 Score=26.13 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=54.8
Q ss_pred CccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeE-EEEeccCCCcc--EEEeCCe-eEECCCCeEEEEEEecCCCCCCC
Q 031011 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHV-AFKVKTTSPKK--YFVRPNT-GVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 7 ~~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~--Y~VrP~~-GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
...|.++-..++-....+.+....+.|.|.++-++ --|+.-..|.- -.|.|+. --|+||++..|.++... |+
T Consensus 379 ~~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~ 454 (513)
T COG1470 379 NELVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PE 454 (513)
T ss_pred ceeEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CC
Confidence 34455544434444445667788899999987555 34444445554 4455653 36899999999999887 44
Q ss_pred CCCCCCeEEEEEEEc
Q 031011 83 DMQCKDKFLLQSTIV 97 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~ 97 (167)
+....|++.--.+..
T Consensus 455 ~a~aGdY~i~i~~ks 469 (513)
T COG1470 455 DAGAGDYRITITAKS 469 (513)
T ss_pred CCCCCcEEEEEEEee
Confidence 555677766544433
No 51
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=41.68 E-value=1.4e+02 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=20.9
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEE
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~ 73 (167)
+..++++|.++.+..|-+.- |. -.+.|+||++.+|.+.
T Consensus 70 ~Vtl~vtN~d~~~H~f~i~~-----~g---is~~I~pGet~TitF~ 107 (135)
T TIGR03096 70 PVKVTVENKSPISEGFSIDA-----YG---ISEVIKAGETKTISFK 107 (135)
T ss_pred EEEEEEEeCCCCccceEECC-----CC---cceEECCCCeEEEEEE
Confidence 34555567666555444432 21 2566777776666655
No 52
>PF13205 Big_5: Bacterial Ig-like domain
Probab=40.89 E-value=1.1e+02 Score=20.69 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=35.8
Q ss_pred eEEEeccCCc-eeEeEEEEE--cCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 16 ELKFIFELEK-QGFCDLKVI--NNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 16 ~L~F~~~~~~-~~~~~l~L~--N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
.|.|+.+.+. .....+.+. +....++.+. ....+.+.+.|. +-|.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 5777766432 223455554 3445555555 444588888888 557888988888853
No 53
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=38.37 E-value=93 Score=23.95 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=33.8
Q ss_pred eeEeEEEEEcCCCCeE-EEEeccCC-C--ccEEEeCCeeEECCCCeEEEEEEe
Q 031011 26 QGFCDLKVINNTEHHV-AFKVKTTS-P--KKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 26 ~~~~~l~L~N~s~~~v-aFKVKTT~-p--~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
-+.-.|+++|.++..+ --+|.... + -+-.--|..+.|+||+++.+.+-.
T Consensus 86 mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 86 MVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred cEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3467788899999766 34444444 2 234444899999999998876654
No 54
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.76 E-value=1.2e+02 Score=24.96 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCeEEEE--eccCCCccEEEeCCeeEECCCCeEEEEEE
Q 031011 29 CDLKVINNTEHHVAFK--VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (167)
Q Consensus 29 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~ 73 (167)
..|+++|++..++.|- .-..+..... -..+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~~~~~~~--~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNVGGRKLG--LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEeeCceecC--CCcceECCCccceeecC
Confidence 6899999999999887 3333333222 67889999998875554
No 55
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=33.23 E-value=1.7e+02 Score=20.37 Aligned_cols=46 Identities=7% Similarity=0.014 Sum_probs=27.1
Q ss_pred CceeEeEEEEEcCCCCe--EEEEeccCCCccEEEeCC-----eeEECCCCeEE
Q 031011 24 EKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN-----TGVVQPWDSCI 69 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~-----~GiI~Pg~s~~ 69 (167)
++..+..+.|+|.++.+ +.||+-==+.+-+.|.|. .=.|.|+++..
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~ 75 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVT 75 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEE
Confidence 56678999999998766 788887777777777766 33455555433
No 56
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=32.16 E-value=57 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.1
Q ss_pred CCeeEECCCCeEEEEEEe-cCC
Q 031011 57 PNTGVVQPWDSCIIRVTL-QAQ 77 (167)
Q Consensus 57 P~~GiI~Pg~s~~I~V~l-~~~ 77 (167)
|...-|+||+++++.+.. .|.
T Consensus 123 p~wqslapG~s~~~~~~YyLPi 144 (180)
T PF06483_consen 123 PAWQSLAPGASVELDMVYYLPI 144 (180)
T ss_pred CCccccCCCCEEEEeEEEEecc
Confidence 788889999999998764 454
No 57
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=31.51 E-value=82 Score=24.80 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=44.9
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
+-..-|.|-|+..+.|-.-+...+.|.+| +.|.|+|+..+-|.-.-.. +. | .-.+..||.+.-..+
T Consensus 19 ~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~--eL--N--~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 19 RFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE--EL--N--DLERVAVQLIAYKKD 84 (162)
T ss_dssp -EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG--GG--G--G-SSEEEEEEEE-SS
T ss_pred ceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH--Hh--h--ccceeEEEEEEEcCC
Confidence 56777899999999999999988899888 7899999998877644332 11 1 234666666665443
No 58
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=31.32 E-value=1.2e+02 Score=25.21 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCeEEEE-eccCCCccEEEeCCeeEECCCCeEEEEE
Q 031011 29 CDLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (167)
Q Consensus 29 ~~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~GiI~Pg~s~~I~V 72 (167)
..|+++|++...+.|. ++....+ -.+....|.|.|+++..+.+
T Consensus 176 ~~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 176 SGIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred CEEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 3499999999998776 4322222 12223457899999888875
No 59
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=29.12 E-value=1.5e+02 Score=24.13 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=28.4
Q ss_pred EEEEEcCCCCeEEEE-eccCCCccEEEeCCeeEECCCCeEEEEE
Q 031011 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (167)
Q Consensus 30 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~GiI~Pg~s~~I~V 72 (167)
.|++.|+|...+.|- ++.... . +. ..|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~~~-~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNSH-E--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEECCc-c--cC-CCceECCCCccEEEc
Confidence 499999999999765 555332 2 32 358999999888764
No 60
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.84 E-value=97 Score=22.51 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=34.7
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEE----EEeccCCCc---------cEEEeCCee---EECCCCeEEEEEEe
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSPK---------KYFVRPNTG---VVQPWDSCIIRVTL 74 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va----FKVKTT~p~---------~Y~VrP~~G---iI~Pg~s~~I~V~l 74 (167)
.+.+..+.++.- ..+..|+++|++++||- |-.==+++. -|+..=+.| -.+||++.+|.+.-
T Consensus 7 ~~~~~~I~lN~g---r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 7 ILKEGDIELNAG---REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVP 83 (101)
T ss_pred EeCCCCeEeCCC---CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEE
Confidence 334456777642 23689999999999883 222222221 133332223 35777777766554
Q ss_pred c
Q 031011 75 Q 75 (167)
Q Consensus 75 ~ 75 (167)
.
T Consensus 84 ~ 84 (101)
T cd00407 84 I 84 (101)
T ss_pred c
Confidence 3
No 61
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.11 E-value=1e+02 Score=22.41 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=35.1
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEE----EEeccCCC---------ccEEEeCCee---EECCCCeEEEEEEe
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTL 74 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va----FKVKTT~p---------~~Y~VrP~~G---iI~Pg~s~~I~V~l 74 (167)
.+.+.++..+. + ..+..|+++|++|+||- |-.==+++ .-|+..=+.| -.+||++.+|.+.-
T Consensus 7 ~~~~~~I~ln~--g-r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 7 QLAEGDITINE--G-RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred ecCCCCEEeCC--C-CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 34445667664 2 23689999999999873 22221221 1233332233 35778777776654
Q ss_pred cC
Q 031011 75 QA 76 (167)
Q Consensus 75 ~~ 76 (167)
..
T Consensus 84 ~g 85 (101)
T TIGR00192 84 IG 85 (101)
T ss_pred cc
Confidence 33
No 62
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=26.83 E-value=1.9e+02 Score=19.09 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=26.3
Q ss_pred EEEEEcCCCCe-----EEEEeccCCCccE-EEeCCeeEECCCCeEEEEEEec
Q 031011 30 DLKVINNTEHH-----VAFKVKTTSPKKY-FVRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 30 ~l~L~N~s~~~-----vaFKVKTT~p~~Y-~VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
+|+++|+..-. +.+.|.-..-..- ...+..+.++|+++..+.+.+.
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~ 52 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVS 52 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEE
Confidence 36677776532 3334444333333 5567777888888887776543
No 63
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=26.70 E-value=2.2e+02 Score=19.66 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=32.2
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCC--CeEEEEeccCCCccEEEeC----CeeEECCCCeEEEEEE
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTE--HHVAFKVKTTSPKKYFVRP----NTGVVQPWDSCIIRVT 73 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT~p~~Y~VrP----~~GiI~Pg~s~~I~V~ 73 (167)
-+.++|+.|+... ++ .++++|.+. +.+.|.=.......-...+ ..+.+.||++..+.+.
T Consensus 11 ~~~F~P~~i~v~~--G~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 11 ALVFEPAKISIAA--GD----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS 75 (99)
T ss_pred ceeEeCCEEEECC--CC----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC
Confidence 4688999988864 32 367788754 4444421111111000111 2356789998887655
No 64
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.50 E-value=1.1e+02 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=20.6
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEE
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVA 42 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va 42 (167)
.+.+.++.++. ++..+..|+++|++|+||-
T Consensus 7 ~~~~~~I~ln~--grr~~~~l~V~NtGDRPIQ 36 (104)
T PRK13202 7 FYGSGDIEMNA--AALSRLQMRIINAGDRPVQ 36 (104)
T ss_pred ecCCCCEEeCC--CCCceEEEEEEeCCCCceE
Confidence 34455677764 2223689999999999883
No 65
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=25.00 E-value=85 Score=22.78 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=30.8
Q ss_pred EcCCeEEEeccCCceeEeEEEEEcCCCCeEE----EEeccCCCcc---------EEEeCCee---EECCCCeEEEEEEec
Q 031011 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSPKK---------YFVRPNTG---VVQPWDSCIIRVTLQ 75 (167)
Q Consensus 12 v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va----FKVKTT~p~~---------Y~VrP~~G---iI~Pg~s~~I~V~l~ 75 (167)
+.+.++..+. + ..+..|+++|++|+||- |-.==+++.. |+..=+.| -.+||++.+|.+.-.
T Consensus 7 ~~~~~I~lN~--g-r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~ 83 (100)
T PF00699_consen 7 LADGDIELNA--G-RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPI 83 (100)
T ss_dssp --SSEEETTT--T-SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-
T ss_pred eCCCcEEecC--C-CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEc
Confidence 4445566553 2 34789999999999984 2222233221 45443333 467888887776644
Q ss_pred C
Q 031011 76 A 76 (167)
Q Consensus 76 ~ 76 (167)
.
T Consensus 84 g 84 (100)
T PF00699_consen 84 G 84 (100)
T ss_dssp S
T ss_pred c
Confidence 3
No 66
>PRK13203 ureB urease subunit beta; Reviewed
Probab=24.95 E-value=1.2e+02 Score=22.15 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.5
Q ss_pred EcCCeEEEeccCCceeEeEEEEEcCCCCeEE
Q 031011 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVA 42 (167)
Q Consensus 12 v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va 42 (167)
+.+.++.++.. ..+..|+++|++++||-
T Consensus 8 ~~~~~I~ln~g---r~~~~l~V~NtGDRPIQ 35 (102)
T PRK13203 8 TADGEIELNAG---RETVTLTVANTGDRPIQ 35 (102)
T ss_pred cCCCCEEeCCC---CCEEEEEEEeCCCCceE
Confidence 34456666642 23689999999999873
No 67
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=24.19 E-value=2.2e+02 Score=18.79 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCeEEEeccCCceeEeEEEEEcCCC--CeEEEEecc---CCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 14 PEELKFIFELEKQGFCDLKVINNTE--HHVAFKVKT---TSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 14 P~~L~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKT---T~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
|-.|.+...........|.|.|-.. -.....|.+ +..+.|.+.++.+ |.++....|.|.-
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 3467776654455678899988655 222233332 2237788888775 5666677777773
No 68
>CHL00031 psbT photosystem II protein T
Probab=22.95 E-value=16 Score=21.23 Aligned_cols=11 Identities=45% Similarity=1.074 Sum_probs=8.4
Q ss_pred hheeeeeeeec
Q 031011 156 SFGILLFALQF 166 (167)
Q Consensus 156 ~~~~~~~~~~~ 166 (167)
..|+|.|||+|
T Consensus 13 tlgilFFAI~F 23 (33)
T CHL00031 13 TLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHhhee
Confidence 45788888887
No 69
>smart00605 CW CW domain.
Probab=22.36 E-value=1.2e+02 Score=20.88 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=14.7
Q ss_pred eEEEEEcC-CCCeEEEEeccCCCc
Q 031011 29 CDLKVINN-TEHHVAFKVKTTSPK 51 (167)
Q Consensus 29 ~~l~L~N~-s~~~vaFKVKTT~p~ 51 (167)
..++-.+. +...||||+.++.+.
T Consensus 57 ~~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 57 LTVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEEccCCCCcEEEEEEeCCCCC
Confidence 34444444 468899999866543
No 70
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=21.61 E-value=2.8e+02 Score=22.84 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCeEEEE-eccC-CCccEEEeCCeeEECCCCeEEEEEE
Q 031011 29 CDLKVINNTEHHVAFK-VKTT-SPKKYFVRPNTGVVQPWDSCIIRVT 73 (167)
Q Consensus 29 ~~l~L~N~s~~~vaFK-VKTT-~p~~Y~VrP~~GiI~Pg~s~~I~V~ 73 (167)
..|+++|++..++.+. ++-. +.+.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 3499999999988765 4322 2233333 3478999998888653
No 71
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.57 E-value=1.5e+02 Score=23.27 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=36.2
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEE----EEeccCCCc---------cEEEeCCee---EECCCCeEEEEEEe
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSPK---------KYFVRPNTG---VVQPWDSCIIRVTL 74 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~va----FKVKTT~p~---------~Y~VrP~~G---iI~Pg~s~~I~V~l 74 (167)
.+.+.+|+++. + .....|+++|++++||- |-+==+++. -|+..=+.| -.+||++.+|.+.-
T Consensus 30 ~~~~~~I~lN~--g-r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 30 VLAKDPIEINQ--G-RPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred EeCCCCeEeCC--C-CcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 34445566654 2 23689999999999883 322222222 133332233 46788888777664
Q ss_pred cC
Q 031011 75 QA 76 (167)
Q Consensus 75 ~~ 76 (167)
..
T Consensus 107 ~g 108 (159)
T PRK13204 107 FA 108 (159)
T ss_pred cc
Confidence 43
No 72
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=21.44 E-value=99 Score=21.67 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCeE---EEEeccCCCccEEEeCCeeEECCCCeEEEE
Q 031011 29 CDLKVINNTEHHV---AFKVKTTSPKKYFVRPNTGVVQPWDSCIIR 71 (167)
Q Consensus 29 ~~l~L~N~s~~~v---aFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~ 71 (167)
--|.|.|.++..| .|+++-. ...|. .|..-++.||+.+.|.
T Consensus 26 e~VEl~N~~~~~vdL~gw~L~~~-~~~~~-~~~~~~l~pg~~~~v~ 69 (116)
T PF00932_consen 26 EWVELYNPGDSTVDLSGWKLVDS-NNTYT-FPPGTTLAPGEYVVVW 69 (116)
T ss_dssp SEEEEEE-SSS-EEGTT-EEEEE-EEEEE---TT-EE-TTEEEEEE
T ss_pred EEEEEEECCCCcEeeccEEEEEC-CccEE-ccCCcCcCCCCEEEEE
Confidence 7899999999888 5777655 33444 4555566688865443
No 73
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=21.44 E-value=2.6e+02 Score=18.64 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=15.2
Q ss_pred eEeEEEEEcCCCCeE-EEEeccC
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTT 48 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT 48 (167)
....++|+|.+.++| ..++.+.
T Consensus 19 ~qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 19 TQYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEEECCCCeEEEEEEEEC
Confidence 468899999998777 3344433
No 74
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=20.55 E-value=2.9e+02 Score=18.86 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEE
Q 031011 38 EHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQS 94 (167)
Q Consensus 38 ~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s 94 (167)
..++.+-+.|..-..-.+-+....+.||++..+++.+... .. ....|+|.+..
T Consensus 33 ~~~v~~~~Gt~~v~~ri~ll~~~~~~pg~~~~a~l~l~~p--l~--~~~gdrfilR~ 85 (97)
T cd04094 33 RQRVHLHHGTSEVLARVVLLDRDELAPGEEALAQLRLEEP--LV--ALRGDRFILRS 85 (97)
T ss_pred CCeEEEEeccceEEEEEEeCCccccCCCCEEEEEEEECCc--Ee--ecCCCeEEEee
Confidence 4667777777763333334455678899999999998752 12 23569999854
No 75
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=20.25 E-value=15 Score=20.98 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=8.1
Q ss_pred hheeeeeeeec
Q 031011 156 SFGILLFALQF 166 (167)
Q Consensus 156 ~~~~~~~~~~~ 166 (167)
.-|++.|||+|
T Consensus 13 tlgiiFFAIfF 23 (31)
T PRK11875 13 ALVTLFFAIAF 23 (31)
T ss_pred HHHHHHHhhhc
Confidence 34678888887
No 76
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=20.12 E-value=2.3e+02 Score=17.48 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=35.3
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEe-CCee---EECCCCeEEEEEE
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-PNTG---VVQPWDSCIIRVT 73 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G---iI~Pg~s~~I~V~ 73 (167)
|.|-|+.|...........+.+.-.--.....-+.+++.......+. +... .+++|+.+.+.+.
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~ 68 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWD 68 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEE
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEEC
Confidence 45678777775222234455555444456666677877776664443 4433 6888887766654
No 77
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.06 E-value=3.6e+02 Score=21.02 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEE-----------eccCCCccEEEeCCeeE-ECCCCeEEEEEEe
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFK-----------VKTTSPKKYFVRPNTGV-VQPWDSCIIRVTL 74 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFK-----------VKTT~p~~Y~VrP~~Gi-I~Pg~s~~I~V~l 74 (167)
.=+|..+...+.. ...+.++-|+|+++..++|- +.+-+.-.|..-+..|+ |.||+--. +|+.
T Consensus 55 IndPg~i~~~~~~-g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~-ev~v 128 (154)
T COG3354 55 INDPGQIPYVGTD-GPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGR-EVTV 128 (154)
T ss_pred ecCCCCCccccCC-CceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceee-EEEe
Confidence 3355555444321 23468888999999999885 34455556777777888 88888664 4443
Done!