Query 031011
Match_columns 167
No_of_seqs 130 out of 715
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 3E-35 1E-39 225.0 16.3 132 7-142 12-144 (147)
2 1z9l_A Vesicle-associated memb 100.0 3.7E-34 1.3E-38 213.9 15.2 121 5-129 6-127 (128)
3 1wic_A Hypothetical protein ri 100.0 1.4E-34 4.7E-39 222.8 9.3 125 6-135 15-142 (152)
4 1msp_A MSP, major sperm protei 100.0 7.9E-32 2.7E-36 201.4 16.1 120 6-129 5-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 1.3E-27 4.4E-32 174.7 12.1 104 10-127 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 5.9E-27 2E-31 172.9 14.6 107 7-127 8-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.6 2.5E-07 8.5E-12 67.3 8.6 72 3-77 19-91 (122)
8 2e6j_A Hydin protein; PAPD, st 98.3 3.6E-06 1.2E-10 59.5 9.6 72 6-77 6-81 (112)
9 3qbt_B Inositol polyphosphate 98.2 1.3E-05 4.5E-10 59.9 10.8 70 7-76 24-100 (140)
10 3qis_A Inositol polyphosphate 97.8 0.00015 5.2E-09 61.9 10.8 72 6-77 26-104 (366)
11 2qsv_A Uncharacterized protein 97.1 0.003 1E-07 49.9 9.0 67 10-77 3-70 (220)
12 2qsv_A Uncharacterized protein 96.8 0.0055 1.9E-07 48.4 8.3 69 7-77 117-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 96.0 0.15 5.2E-06 41.4 13.0 112 9-134 29-150 (257)
14 4ay0_A Chaperone protein CAF1M 94.9 1 3.5E-05 35.5 13.8 114 7-134 11-131 (218)
15 2co7_B SAFB chaperone, putativ 94.8 0.53 1.8E-05 37.3 11.9 86 8-99 12-102 (221)
16 2xg5_A PAPD, chaperone protein 94.8 0.74 2.5E-05 36.3 12.6 111 10-134 2-121 (218)
17 4djm_A DRAB; chaperone, PILI; 94.3 0.37 1.3E-05 38.7 10.0 86 8-99 22-112 (239)
18 1klf_A FIMC chaperone, chapero 94.1 0.97 3.3E-05 35.3 11.9 113 10-134 2-121 (205)
19 1l4i_A SFAE protein; periplasm 93.5 0.84 2.9E-05 35.6 10.5 113 10-134 2-121 (206)
20 3gfu_C Chaperone protein FAEE; 92.6 3.2 0.00011 32.9 14.9 108 10-133 2-116 (224)
21 2r39_A FIXG-related protein; s 89.4 1.5 5.3E-05 30.8 7.3 49 28-76 34-83 (118)
22 1yew_A Particulate methane mon 87.9 2.8 9.6E-05 35.9 8.9 67 9-77 249-337 (382)
23 3rfr_A PMOB; membrane, oxidore 84.2 4.2 0.00014 35.1 8.2 67 8-77 282-369 (419)
24 3idu_A Uncharacterized protein 78.6 6.7 0.00023 28.3 6.6 69 23-100 31-100 (127)
25 3zy7_A AP-1 complex subunit ga 78.0 3.1 0.00011 29.7 4.6 81 27-111 31-121 (122)
26 2xzz_A Protein-glutamine gamma 65.3 27 0.00092 24.0 6.9 61 16-77 9-74 (102)
27 1gyu_A Adapter-related protein 60.5 14 0.00049 26.9 5.0 67 27-97 49-121 (140)
28 1iu1_A Gamma1-adaptin; coated 58.6 20 0.00067 26.3 5.5 67 27-97 55-127 (146)
29 2iaa_C Azurin; quinoprotein, t 50.7 11 0.00036 27.1 2.8 63 9-74 11-98 (128)
30 2ccw_A Azurin II, AZN-2; elect 47.3 10 0.00035 27.1 2.2 64 9-75 12-100 (129)
31 3e38_A Two-domain protein cont 44.6 34 0.0012 28.5 5.4 65 29-100 270-334 (343)
32 3hn9_A Lamin-B1; structural ge 43.9 28 0.00097 24.7 4.2 41 29-70 25-71 (123)
33 1ifr_A Lamin A/C; immunoglobul 39.4 35 0.0012 24.3 4.0 46 29-76 19-70 (121)
34 2huh_A Putative DNA mismatch r 38.8 52 0.0018 24.4 5.0 66 28-100 29-94 (147)
35 3isy_A Bsupi, intracellular pr 38.6 62 0.0021 23.0 5.2 32 24-55 17-48 (120)
36 1nwp_A Azurin; electron transp 37.6 20 0.00069 25.5 2.5 64 9-75 12-100 (128)
37 2e9g_A AP-1 complex subunit ga 37.1 16 0.00054 26.2 1.9 66 27-96 40-111 (131)
38 4gio_A Putative lipoprotein; u 35.5 73 0.0025 22.0 5.1 48 24-71 35-88 (107)
39 3jt0_A Lamin-B1; structural ge 35.2 30 0.001 25.4 3.2 42 29-70 38-84 (144)
40 1p4u_A ADP-ribosylation factor 34.5 51 0.0017 24.2 4.4 65 29-97 57-131 (153)
41 4hci_A Cupredoxin 1; structura 33.8 98 0.0033 20.1 6.9 51 12-74 25-75 (100)
42 1c7s_A Beta-N-acetylhexosamini 33.1 61 0.0021 30.5 5.6 49 27-75 40-110 (858)
43 2lll_A Lamin-B2; immunoglobuli 32.7 42 0.0014 24.5 3.6 45 29-75 34-84 (139)
44 3vta_A Cucumisin; subtilisin-l 32.6 1.9E+02 0.0066 25.6 8.6 50 27-76 539-591 (621)
45 1yyc_A LEA protein, putative l 30.1 1.4E+02 0.0047 22.4 6.2 51 26-76 63-119 (174)
46 1iby_A Nitrosocyanin; RED copp 29.9 1.2E+02 0.0042 20.0 8.2 51 12-74 35-85 (112)
47 1cuo_A Protein (azurin ISO-2); 29.8 35 0.0012 24.2 2.7 62 10-74 13-99 (129)
48 1wm3_A Ubiquitin-like protein 29.3 58 0.002 20.3 3.5 21 30-50 3-23 (72)
49 3ndz_E Endoglucanase D; cellot 28.7 1.2E+02 0.0041 20.8 5.3 49 27-75 17-86 (107)
50 1ufg_A Lamin A, nuclear lamin; 28.0 82 0.0028 23.2 4.6 45 29-75 50-100 (151)
51 1xo8_A AT1G01470; structural g 27.8 1E+02 0.0036 22.3 5.1 49 27-75 41-95 (151)
52 3o0l_A Uncharacterized protein 27.2 94 0.0032 21.5 4.6 48 24-71 37-91 (112)
53 1qhq_A Protein (auracyanin); e 27.0 53 0.0018 22.9 3.3 61 11-75 29-113 (140)
54 2g30_A AP-2 complex subunit be 25.6 54 0.0018 26.2 3.4 52 24-76 54-111 (258)
55 4ep8_B Urease subunit beta; al 25.0 59 0.002 22.6 3.0 62 12-76 8-85 (101)
56 3ay2_A Lipid modified azurin p 23.7 34 0.0012 25.7 1.7 61 11-74 54-138 (167)
57 3mnm_A ADP-ribosylation factor 23.6 1.9E+02 0.0065 20.2 9.3 69 6-74 8-86 (123)
58 1tza_A APAG protein, SOR45; st 23.2 80 0.0027 22.9 3.6 69 1-69 1-82 (134)
59 2lv4_A Putative outer membrane 23.2 98 0.0034 22.6 4.0 38 45-82 43-80 (146)
60 2io0_B Small ubiquitin-related 23.0 83 0.0028 20.8 3.5 23 28-50 5-27 (91)
61 1bxv_A Plastocyanin; copper pr 21.3 1.6E+02 0.0053 18.3 5.2 53 10-72 14-66 (91)
62 3i6s_A Subtilisin-like proteas 20.6 2.6E+02 0.009 25.0 7.3 50 27-76 560-612 (649)
63 2x3c_A Toxic extracellular end 20.5 3.6E+02 0.012 22.2 8.4 68 24-95 35-126 (343)
64 1vjj_A Protein-glutamine gluta 20.4 2.7E+02 0.0093 25.6 7.3 58 16-77 597-663 (692)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=3e-35 Score=224.98 Aligned_cols=132 Identities=30% Similarity=0.527 Sum_probs=115.8
Q ss_pred CccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCC
Q 031011 7 NQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQ 85 (167)
Q Consensus 7 ~~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~ 85 (167)
.++|.|+|. +|.|++++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+++. .+++.+
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCcccc
Confidence 568999996 999999999999999999999999999999999999999999999999999999999999974 344567
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCCCCCCcccc
Q 031011 86 CKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQGNLEDEG 142 (167)
Q Consensus 86 ~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~~~~~~~~~ 142 (167)
++|||+||++.++++. .++ .++|++..+..++++||||+|+.|++.+...+.++
T Consensus 91 ~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~~~~~~~ 144 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNENDKLNDSGP 144 (147)
T ss_dssp SCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCSSCCSCSSC
T ss_pred CCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCCcccCcccc
Confidence 8999999999998753 344 57888877888999999999999987765554443
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=3.7e-34 Score=213.92 Aligned_cols=121 Identities=32% Similarity=0.562 Sum_probs=108.0
Q ss_pred CCCccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCC
Q 031011 5 GGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPD 83 (167)
Q Consensus 5 ~~~~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~ 83 (167)
...++|.++|. +|.|++++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+++++.. +++
T Consensus 6 ~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~p~ 84 (128)
T 1z9l_A 6 KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-DPN 84 (128)
T ss_dssp SCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-CTT
T ss_pred CCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-Ccc
Confidence 34678999995 9999999999999999999999999999999999999999999999999999999999999743 445
Q ss_pred CCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEc
Q 031011 84 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 129 (167)
Q Consensus 84 ~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~ 129 (167)
.+++|||+||++.++++. .++ .++|++..+..++++||||+|.
T Consensus 85 ~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 85 EKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 578999999999999863 345 5788887788899999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=1.4e-34 Score=222.76 Aligned_cols=125 Identities=27% Similarity=0.353 Sum_probs=111.5
Q ss_pred CCccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCC
Q 031011 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (167)
Q Consensus 6 ~~~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~ 84 (167)
..++|.|+|. +|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4679999997 8999999988889999999999999999999999999999999999999999999999999743 2
Q ss_pred CCCCeEEEEEEEcC--CCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCCC
Q 031011 85 QCKDKFLLQSTIVP--SNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQ 135 (167)
Q Consensus 85 ~~~dkF~V~s~~~~--~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~~ 135 (167)
.++|||+||++.++ ++.+.+++. ++|++..+..++++||||+|.+++.|.
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~ 142 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPN 142 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSS
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCC
Confidence 57999999999998 455555664 788887788899999999999988764
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=7.9e-32 Score=201.39 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=104.9
Q ss_pred CCccEEEcCC-eEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCC
Q 031011 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (167)
Q Consensus 6 ~~~lL~v~P~-~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~ 84 (167)
....|.++|. +|.|++|+++..++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|+|+++.+.|++
T Consensus 5 ~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~- 83 (126)
T 1msp_A 5 PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED- 83 (126)
T ss_dssp CCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-
T ss_pred CCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-
Confidence 3457999996 89999999999999999999999999999999999999999999999999999999999998765544
Q ss_pred CCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEc
Q 031011 85 QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 129 (167)
Q Consensus 85 ~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~ 129 (167)
..+|||+|||+.++++.+ +++..+||.++ ..+..++|+|.|.
T Consensus 84 ~~kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 84 LNNDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp CSSCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred cCCCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 359999999999998763 46765666442 3688999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=1.3e-27 Score=174.72 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=87.8
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCe
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDK 89 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dk 89 (167)
|.|+|.+|.|.++.+ .+.|+|+|++++++|||||||+|++|+|||+.|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 789999999998743 69999999999999999999999999999999999999999999999985 2 36999
Q ss_pred EEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEE
Q 031011 90 FLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (167)
Q Consensus 90 F~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~ 127 (167)
|+||++.++++. .+. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998752 233 578877533 456666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=5.9e-27 Score=172.86 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=91.2
Q ss_pred CccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCC
Q 031011 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQC 86 (167)
Q Consensus 7 ~~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~ 86 (167)
..++.++|.+|.|++.. ..+.|+|+|++++++|||||||+|+.|+|||+.|+|+||++++|.|+++++ + .+
T Consensus 8 ~~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k 78 (116)
T 1m1s_A 8 HSMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PK 78 (116)
T ss_dssp CCSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SC
T ss_pred ceeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CC
Confidence 46899999999998763 379999999999999999999999999999999999999999999999996 2 36
Q ss_pred CCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEE
Q 031011 87 KDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (167)
Q Consensus 87 ~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~ 127 (167)
+|||+||++.++++. .+. +++|++..+ .++.+|++.
T Consensus 79 ~DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 79 EDKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CCEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 899999999998642 233 478877543 677787764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=2.5e-07 Score=67.30 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=59.2
Q ss_pred CCCCCccEEEcCCeEEEecc-CCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 3 ADGGNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 3 ~~~~~~lL~v~P~~L~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
|......|.+ |+.|.|..- .+...+..+.|+|.++.++.|++++.+ -|.|.|+.|.|.||+++.|.|+..|.
T Consensus 19 a~~~~~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 19 ARGARAILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFEPQ 91 (122)
T ss_dssp CCSCCCCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEECCS
T ss_pred EEcCCcEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEEcC
Confidence 3344445555 677888643 355678999999999999999999854 79999999999999999999999996
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=3.6e-06 Score=59.54 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=61.0
Q ss_pred CCccEEEcCCeEEEecc-CCceeEeEEEEEcCCCCeEEEEeccCCC---ccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 6 GNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSP---KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 6 ~~~lL~v~P~~L~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p---~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.-+.+.+++..|.|-.- .+...++.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 6 ~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 6 SGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 44678999999999653 4567789999999999999999964322 569999999999999999999999984
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.23 E-value=1.3e-05 Score=59.92 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred CccEEEcCCeEEEec-cCCceeEeEEEEEcCCCCeEEEEeccC------CCccEEEeCCeeEECCCCeEEEEEEecC
Q 031011 7 NQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTT------SPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 7 ~~lL~v~P~~L~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 76 (167)
-+-+.+++.+|.|-. .++...++.|+|+|++.-+..|++.-. .+.-+.|.|..|.|.||+++.|.|++..
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 467899999999974 356677999999999999999998853 2456999999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.80 E-value=0.00015 Score=61.92 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCccEEEcCCeEEEec-cCCceeEeEEEEEcCCCCeEEEEeccCCC------ccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTSP------KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 6 ~~~lL~v~P~~L~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.-+-+.+++.+|.|.. .++...+..|+|+|++.-+..|++..... .-+.|.|..|.|.||+++.|.|++...
T Consensus 26 ~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 26 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp --CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred cCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 3467899999999974 46677899999999999999999886432 227899999999999999999998754
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=97.06 E-value=0.003 Score=49.92 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=57.6
Q ss_pred EEEcCCeEEEecc-CCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 10 ISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 10 L~v~P~~L~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
|.++++.+.|..- .+......++++|.++.++-++.... |..+.+++..+.|.||++..|.|++.+.
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~ 70 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVP 70 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCC
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcch
Confidence 8899999999753 34455779999999999999987544 8888999999999999999999999874
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.78 E-value=0.0055 Score=48.36 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=58.3
Q ss_pred CccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEE-EeccCCCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAF-KVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 7 ~~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
...+.++ ..+.|-.-.+...+..++|+|.++.++.. +|+++. +...+.++.+.|.||++..|.|++.+.
T Consensus 117 ~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 117 TGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 4567888 88888632256678999999999999987 787765 799999999999999999999999874
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=96.04 E-value=0.15 Score=41.44 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=73.3
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC----------CccEEEeCCeeEECCCCeEEEEEEecCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS----------PKKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~----------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~ 78 (167)
-|.+++..++|+... ...+|+|+|.++.++.-.+...+ ..-|.|-|+.-.|+||+...|.|.....
T Consensus 29 ~v~i~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~- 104 (257)
T 3q48_A 29 GLIAQGTRVVFPASE---REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA- 104 (257)
T ss_dssp --CCSCSEEEEETTC---SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-
T ss_pred eEEEcceEEEEeCCC---cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-
Confidence 467788889998632 25899999999988766655332 1249999999999999999999987764
Q ss_pred CCCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 79 ESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 79 ~~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
..|.|. .--|-+...++|+..+. + ...=......||++-|.+...+
T Consensus 105 ~LP~Dr--ESlf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~L~ 150 (257)
T 3q48_A 105 PLPTDR--ESLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQLK 150 (257)
T ss_dssp CCCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECTTCC
T ss_pred CCCCCc--eeEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEecccCc
Confidence 345553 23566666666653211 0 1111234578899988877654
No 14
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=94.90 E-value=1 Score=35.54 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=71.0
Q ss_pred CccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC-------CccEEEeCCeeEECCCCeEEEEEEecCCCC
Q 031011 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (167)
Q Consensus 7 ~~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~ 79 (167)
+.-|.++-..+.|+... -..+|+|+|.++.++.-.....+ ..-|.|-|+.--|+||+...|.|..... .
T Consensus 11 ~agv~l~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~ 86 (218)
T 4ay0_A 11 EYGVTIGESRIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-V 86 (218)
T ss_dssp --CEEESCCEEEEETTC---SCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-C
T ss_pred eeeEEECceEEEECCCC---cEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-C
Confidence 33577888889997532 25889999999988765544311 1249999999999999999999988763 3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 80 SPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 80 ~p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
.|.|. .--|-+...++|+..+... ..=......||++-|.+..-+
T Consensus 87 LP~DR--ESlf~lnv~eIPp~~~~~~--------n~lqia~r~rIKlFyRP~~L~ 131 (218)
T 4ay0_A 87 FPRDK--ESLKWLCVKGIPPKDEDIW--------VDVQFAINNCIKLLVRPNELK 131 (218)
T ss_dssp CCSSS--CEEEEEEEEEECC----------------------CEEEEEEECTTCC
T ss_pred CCcCc--EEEEEEEEEecCCCCcccc--------ceeEEEEEEEEEEEEcCcccC
Confidence 45442 3346666666665311100 001123466888888776654
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=94.81 E-value=0.53 Score=37.25 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=62.7
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCC-----CccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
.-|.+++..+.|+..- -..+|+|+|.++.++.-.+..-+ ..-|.|-|+.--|+||+...|.|..... ..|.
T Consensus 12 A~v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~ 87 (221)
T 2co7_B 12 FSVKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 87 (221)
T ss_dssp EECEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCS
T ss_pred EEEEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCC
Confidence 3477888999998643 25899999999988766554322 2359999999999999999999998763 3455
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031011 83 DMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~ 99 (167)
|. ..-|-+...++|+
T Consensus 88 Dr--Eslf~lnv~eIPp 102 (221)
T 2co7_B 88 DR--ETLQWVCIKAVPP 102 (221)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeecCCC
Confidence 42 3355555556665
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=94.76 E-value=0.74 Score=36.31 Aligned_cols=111 Identities=12% Similarity=0.199 Sum_probs=73.9
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccCC-------CccEEEeCCeeEECCCCeEEEEEEecCC-CCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQ-RES 80 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-------p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~-~~~ 80 (167)
|.+++..+.|+... -..+|+|+|.++. ++.-.+...+ ..-|.|-|+.--|+||+...|.|..... ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 57888889998643 3689999999988 7766554432 2349999999999999999999998762 234
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 81 p~~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
|.|. ..-|-+...++|+..+ + .+ .=......||++-|.+....
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~--~n-----~lqia~r~rIKlFyRP~~l~ 121 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K--AN-----VLQIALQTKIKLFYRPAAIK 121 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C--TT-----EEEEEEEEEEEEEEECGGGC
T ss_pred CCCc--eEEEEEEeecCCCCCC--C--Cc-----eEEEEehheeeEEEcCcccc
Confidence 5553 3445555556665311 0 00 01123567888888766643
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=94.30 E-value=0.37 Score=38.71 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=61.1
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccC-----CCccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT-----SPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT-----~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
.-|.|++..++|+..- ...+|+|+|.++.++.-.+..- ...-|.|-|+.--|+||+...|.|..... ..|.
T Consensus 22 a~v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 97 (239)
T 4djm_A 22 FSLHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPP 97 (239)
T ss_dssp ECCEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCS
T ss_pred EeEEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4577889999998643 2589999999988865544421 12349999999999999999999987753 3455
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031011 83 DMQCKDKFLLQSTIVPS 99 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~ 99 (167)
|. ..-|-+....+|+
T Consensus 98 DR--ESlf~lnv~eIPp 112 (239)
T 4djm_A 98 DR--ESLQWICVKGIPP 112 (239)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEEEecCC
Confidence 43 3345555555565
No 18
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=94.14 E-value=0.97 Score=35.29 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=73.3
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccCC-----CccEEEeCCeeEECCCCeEEEEEEe-cCCCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTL-QAQRESPP 82 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~GiI~Pg~s~~I~V~l-~~~~~~p~ 82 (167)
|.+++..+.|+... ...+|+|+|.++. ++.-.+...+ ..-|.|-|+.--|+||+...|.|.. ... ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 57888889998643 3689999999987 7665554322 2459999999999999999999998 652 3455
Q ss_pred CCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
|. ..-|-+...++|+..+..+ ..+ .=......||++-|.+....
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-~~n-----~lqia~r~riKlFyRP~~l~ 121 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL-TEN-----TLQLAIISRIKLYYRPAKLA 121 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST-TSC-----EEEEEEEEEEEEEEECTTCS
T ss_pred Cc--eEEEEEEeEecCCCCcccc-CCc-----eEEEEeeeeeeEEEcccccC
Confidence 42 3355555556665311100 000 00123467888878776654
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=93.48 E-value=0.84 Score=35.62 Aligned_cols=113 Identities=11% Similarity=0.173 Sum_probs=72.0
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCC-CeEEEEeccCC-----CccEEEeCCeeEECCCCeEEEEEE-ecCCCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVT-LQAQRESPP 82 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~-----p~~Y~VrP~~GiI~Pg~s~~I~V~-l~~~~~~p~ 82 (167)
|.+++..+.|+... ...+|+|+|.++ .++.-.+..-+ ..-|.|-|+.--|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 57788889998643 368999999986 77665554322 235999999999999999999998 653 24455
Q ss_pred CCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCCC
Q 031011 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~~ 134 (167)
|. ..-|-+...++|+..+..+ . +..=......||++-|.+....
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-~-----~n~lqia~r~riKlFyRP~~l~ 121 (206)
T 1l4i_A 78 DR--ESLFWVNVKAIPAMDKAKT-G-----ENYLQFAIVSRIKLLYRPQGLV 121 (206)
T ss_dssp SS--CEEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTTCS
T ss_pred Cc--eEEEEEEeecCCCCccccc-C-----CceEEEEhhheeeEEEeccccC
Confidence 53 2345554445554211100 0 0011234577888888877654
No 20
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=92.60 E-value=3.2 Score=32.94 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=68.0
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCC-eEEEEeccC--C----CccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--S----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~----p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
+.++...+.|+..- ...+|+|+|.++. ++.-.+... . ..-|.|-|+.--|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGDK---DALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETTS---SCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCCC---ceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 45666788898642 2589999999875 543332211 1 2249999999999999999999987753 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCCCCCCcccccccCCCcceEEEeEEEEcCCCC
Q 031011 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (167)
Q Consensus 83 ~~~~~dkF~V~s~~~~~~~d~~~~~~~~f~~~~~~~v~e~kL~~~f~~~~~ 133 (167)
|. ..-|-+....+|+..+. ..=......||++-|.+...
T Consensus 78 DR--ESlf~lnv~eIPp~~~~----------n~Lqiair~rIKLFyRP~~L 116 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPALEG----------SGIAVALRTKLKLFYRPKAL 116 (224)
T ss_dssp SS--CEEEEEEEEEECCCCSS----------SBCCEEEEEEEEEEEECGGG
T ss_pred Cc--eEEEEEEeecCCCCCCC----------CeEEEEEEEEeeEEEccccc
Confidence 42 33455555556653110 01123456677777776554
No 21
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=89.45 E-value=1.5 Score=30.82 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=39.2
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEEEe-CCeeEECCCCeEEEEEEecC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVR-PNTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~GiI~Pg~s~~I~V~l~~ 76 (167)
..+|+|.|.+.++..|.++....+.+.+. |..=.|+||+...+.|.+..
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEE
Confidence 69999999999999999998775446553 55568899998887777654
No 22
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=87.89 E-value=2.8 Score=35.87 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=49.5
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEE----------------------eCCeeEECCCC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV----------------------RPNTGVVQPWD 66 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V----------------------rP~~GiI~Pg~ 66 (167)
.+.++-..-+|.- +++..+-+++++|.++++|-..==+|++-+|.- .|+ .=|.|||
T Consensus 249 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTC
T ss_pred ceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCc
Confidence 4555555556654 467889999999999999988766777766633 332 2389999
Q ss_pred eEEEEEEecCC
Q 031011 67 SCIIRVTLQAQ 77 (167)
Q Consensus 67 s~~I~V~l~~~ 77 (167)
+.+|.|..+..
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999998864
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=84.15 E-value=4.2 Score=35.14 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=50.5
Q ss_pred ccEEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEE---------------------eCCeeEECCCC
Q 031011 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV---------------------RPNTGVVQPWD 66 (167)
Q Consensus 8 ~lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V---------------------rP~~GiI~Pg~ 66 (167)
..+.++-..-+|.- +++..+-+++++|.++++|-..==+|++-+|.= .|+ -|.|||
T Consensus 282 ~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGE 358 (419)
T 3rfr_A 282 EQVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGE 358 (419)
T ss_dssp CCCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTC
T ss_pred CceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCc
Confidence 34556666667764 467789999999999999987766777666651 233 599999
Q ss_pred eEEEEEEecCC
Q 031011 67 SCIIRVTLQAQ 77 (167)
Q Consensus 67 s~~I~V~l~~~ 77 (167)
+.+|.|..+..
T Consensus 359 Trt~~V~a~da 369 (419)
T 3rfr_A 359 SKEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEEECH
T ss_pred ceEEEEEeehH
Confidence 99999999863
No 24
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=78.60 E-value=6.7 Score=28.26 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCceeEeEEEEEcCCCCe-EEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 23 LEKQGFCDLKVINNTEHH-VAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
.++..+-.++++|.+... =+|+|+-...+...-.-..+ |.||++..|.+...+.. ..-+.|....-+++
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 366788999999998766 48888866666655444444 99999999999987531 23566766655554
No 25
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=78.00 E-value=3.1 Score=29.73 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=51.2
Q ss_pred eEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECC--CCeEEEEEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQP--WDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~P--g~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
..-.++.+|.+..+| -|.++.-.|+.|.++ |..| .|.| +..++-.+.+.... ....+=|+.|.+..-...
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g~~ 106 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNGYK 106 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETTEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECCEE
Confidence 456677789987766 788888888887776 7776 6888 66555444443321 123456777777643321
Q ss_pred ----CCCCCCCcccc
Q 031011 101 ----TDVDDLPPDTF 111 (167)
Q Consensus 101 ----~d~~~~~~~~f 111 (167)
.+..+++.+.|
T Consensus 107 ~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 107 VQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEECCCCGGGT
T ss_pred EEEEEEECCCChhhC
Confidence 23456666666
No 26
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=65.35 E-value=27 Score=23.99 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=42.1
Q ss_pred eEEEecc--CCceeEeEEEEEcCCC---CeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 16 ELKFIFE--LEKQGFCDLKVINNTE---HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 16 ~L~F~~~--~~~~~~~~l~L~N~s~---~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.+....+ -+++....++++|+-. ..+.|.|--..-.+=.... .|-|.||+++.+.+.+.|.
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~~~P~ 74 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQSFVPV 74 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEEECCC
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEEEecC
Confidence 3444433 2567899999999976 5557887755532222222 4779999999999999986
No 27
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=60.48 E-value=14 Score=26.88 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=41.2
Q ss_pred eEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCCCe--EEEEEEecCCCCCCCCCCCCCeEEEEEEEc
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPWDS--CIIRVTLQAQRESPPDMQCKDKFLLQSTIV 97 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg~s--~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~ 97 (167)
..-.++.+|.+..+| -|.++.-.|+.|.++ |..| .|.|+.. ++-.+.+.... ..+.+=|+.|.+..-
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~----~~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTT----CCCCCEEEEEEEEET
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEEC
Confidence 455667789887666 788888888887776 6556 5888443 33333332211 112456777777753
No 28
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=58.58 E-value=20 Score=26.30 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=41.3
Q ss_pred eEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCCC--eEEEEEEecCCCCCCCCCCCCCeEEEEEEEc
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPWD--SCIIRVTLQAQRESPPDMQCKDKFLLQSTIV 97 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg~--s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~ 97 (167)
..-.++.+|.+..+| -|.++.-.|+.|.++ |..| .|.|+. .++-.+.+..... .+-+=|+.|.+..-
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~ 127 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEET
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 445667789877666 788888888877776 6556 588844 3333333322111 13566788877754
No 29
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=50.69 E-value=11 Score=27.08 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=38.0
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCe-----EEEEeccCC--------------CccEE------EeCCeeEEC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS--------------PKKYF------VRPNTGVVQ 63 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~--------------p~~Y~------VrP~~GiI~ 63 (167)
-+.++|.+|..+.+.. +-.++++|.+.-+ .-|-+-+.. ...|. +--..++|.
T Consensus 11 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKTCK---EFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecCCc---EEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 3567788888854433 4689999998653 444443321 00110 111245789
Q ss_pred CCCeEEEEEEe
Q 031011 64 PWDSCIIRVTL 74 (167)
Q Consensus 64 Pg~s~~I~V~l 74 (167)
||++..|.+..
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999875
No 30
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=47.33 E-value=10 Score=27.15 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCe-----EEEEeccCC-------------C-ccEE------EeCCeeEEC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------P-KKYF------VRPNTGVVQ 63 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p-~~Y~------VrP~~GiI~ 63 (167)
-+.++|.+|..+.+.+ +-+|+++|...-+ .-|-+-... + ..|. +--..++|.
T Consensus 12 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKSCK---QFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecCCC---EEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 3566788888754333 4689999998653 444443321 0 0110 001245789
Q ss_pred CCCeEEEEEEec
Q 031011 64 PWDSCIIRVTLQ 75 (167)
Q Consensus 64 Pg~s~~I~V~l~ 75 (167)
||++..|.+...
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999988763
No 31
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=44.56 E-value=34 Score=28.46 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 29 CDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 29 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
-.+.|+|.++- -|.++-+++..|.+.++.--|+|+++..+.|......+ ...=+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 68888998876 56777889999999999999999999999988764321 2344677766655443
No 32
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=43.88 E-value=28 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCeEE---EEeccCCCc---cEEEeCCeeEECCCCeEEE
Q 031011 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCII 70 (167)
Q Consensus 29 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~GiI~Pg~s~~I 70 (167)
..++|.|.+++.+. |+++-...+ .|+. |+.=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 46888998876663 777754433 3544 65568999996543
No 33
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=39.43 E-value=35 Score=24.25 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCeE---EEEeccCC---CccEEEeCCeeEECCCCeEEEEEEecC
Q 031011 29 CDLKVINNTEHHV---AFKVKTTS---PKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 29 ~~l~L~N~s~~~v---aFKVKTT~---p~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 76 (167)
..|+|.|.+++.+ .|+++-.. ...-+.-|+.=+|+||+++ .|+-..
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~v--tIws~~ 70 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVV--TIWAAG 70 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEE--EEEETT
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEE--EEEeCC
Confidence 4678888877655 46776542 2223335667789999965 455543
No 34
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=38.76 E-value=52 Score=24.39 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=50.1
Q ss_pred EeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCeEEEEEEEcCCC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~~~~ 100 (167)
.-.+-|.|.|+..+.|-.-+...+.+..+ ..|.|+|+..+.|.=.-.. +. ..--++.||.+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~--el----n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD--VL----NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG--GG----GGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh--Hh----cCCceEEEEEEEEcCC
Confidence 45778899999999999998888887776 7899999998887633222 11 1346889998887664
No 35
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=38.55 E-value=62 Score=22.99 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=22.9
Q ss_pred CceeEeEEEEEcCCCCeEEEEeccCCCccEEE
Q 031011 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV 55 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V 55 (167)
+....-.|+|+|+++.++-+...+.-.=.|.|
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v 48 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFSTGQKFELVV 48 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESSSCCEEEEE
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEE
Confidence 44668899999999999888776654333333
No 36
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=37.62 E-value=20 Score=25.54 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=37.2
Q ss_pred cEEEcCCeEEEeccCCceeEeEEEEEcCCCCe-----EEEEeccCC-------------Cc-cE------EEeCCeeEEC
Q 031011 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------PK-KY------FVRPNTGVVQ 63 (167)
Q Consensus 9 lL~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p~-~Y------~VrP~~GiI~ 63 (167)
-+.++|.+|..+.+.. +-.|+++|.+.-+ .-|-+-+.. ++ .| ++--..++|.
T Consensus 12 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 88 (128)
T 1nwp_A 12 QMSFNTKDIAIDKSCK---TFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIG 88 (128)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecCEEEEecCCC---EEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeC
Confidence 3567788888743322 4689999998643 444443221 00 01 0111234799
Q ss_pred CCCeEEEEEEec
Q 031011 64 PWDSCIIRVTLQ 75 (167)
Q Consensus 64 Pg~s~~I~V~l~ 75 (167)
||++..|.+...
T Consensus 89 pGet~svtf~~~ 100 (128)
T 1nwp_A 89 AGEKDSVTFDVS 100 (128)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999998863
No 37
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.08 E-value=16 Score=26.25 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=39.3
Q ss_pred eEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCCCe--EEEEEEecCCCCCCCCCCCCCeEEEEEEE
Q 031011 27 GFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPWDS--CIIRVTLQAQRESPPDMQCKDKFLLQSTI 96 (167)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg~s--~~I~V~l~~~~~~p~~~~~~dkF~V~s~~ 96 (167)
..-.++.+|.+..+| -|.++.-.|+.|.++ |..| .|.|+.. ++-.+.+... .....+=|+.|.+..
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~----~~~~l~lR~klsY~~ 111 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNP----NKAPLRLKLRLTYDH 111 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECT----TCCCCCEEEEEEEEC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCC----CCCCEEEEEEEEEEE
Confidence 455667789887666 777777777777666 6555 6888554 2222222221 111345577777764
No 38
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=35.53 E-value=73 Score=22.01 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=34.5
Q ss_pred CceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCC------eeEECCCCeEEEE
Q 031011 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPN------TGVVQPWDSCIIR 71 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~------~GiI~Pg~s~~I~ 71 (167)
++.....++++|.++..+.||+.==+.+-+.|.+. .=.|.++++..|.
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~ 88 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILR 88 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEE
Confidence 44667889999999999999998777777777542 2346666655443
No 39
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=35.18 E-value=30 Score=25.43 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCeE---EEEeccCCCc--cEEEeCCeeEECCCCeEEE
Q 031011 29 CDLKVINNTEHHV---AFKVKTTSPK--KYFVRPNTGVVQPWDSCII 70 (167)
Q Consensus 29 ~~l~L~N~s~~~v---aFKVKTT~p~--~Y~VrP~~GiI~Pg~s~~I 70 (167)
..|+|.|.+++.+ .|+|+=...+ .-+.-|+.=+|+||++++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 4688899887666 4667643332 1234465568999997554
No 40
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=34.53 E-value=51 Score=24.25 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCCCe------EEEEEEecCCCCCCCCCCCCCeEEEEEEEc
Q 031011 29 CDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPWDS------CIIRVTLQAQRESPPDMQCKDKFLLQSTIV 97 (167)
Q Consensus 29 ~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg~s------~~I~V~l~~~~~~p~~~~~~dkF~V~s~~~ 97 (167)
-.++.+|.+..+| -|.++.-.|+.|.++ |..| .|.|++. ++-.+.+.... ...-+=|+.|.+..-
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~----~~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPL----KEKVRLRYKLTFALG 131 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTT----CCCCCEEEEEEEEET
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEEC
Confidence 3566678877655 777777777777766 6555 5777553 33333333211 123456777777753
No 41
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=33.84 E-value=98 Score=20.13 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=33.0
Q ss_pred EcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 12 v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
.+|++|..+. ++ +-.+.++|....+..|-+.... ..+.+.||++..+.++.
T Consensus 25 F~P~~i~v~~--G~--tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 25 FNPNVITIPI--NE--STTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EESSEEEECT--TS--CEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EeCCEEEECC--CC--EEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 4566666542 33 3567788988777777765432 23568899988777663
No 42
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=33.10 E-value=61 Score=30.54 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=35.1
Q ss_pred eEeEEEEEcCC------CCeEE--------------EEeccCCCccEEEeCCeeE--ECCCCeEEEEEEec
Q 031011 27 GFCDLKVINNT------EHHVA--------------FKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTLQ 75 (167)
Q Consensus 27 ~~~~l~L~N~s------~~~va--------------FKVKTT~p~~Y~VrP~~Gi--I~Pg~s~~I~V~l~ 75 (167)
-+..|+|+|.+ +=.|. |+|..-+-+.|++.|.-++ |.||++..|.+...
T Consensus 40 ~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 40 NRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 46788888882 22222 4555555666888898887 99999999999753
No 43
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=32.69 E-value=42 Score=24.50 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCeE---EEEeccCCCc---cEEEeCCeeEECCCCeEEEEEEec
Q 031011 29 CDLKVINNTEHHV---AFKVKTTSPK---KYFVRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 29 ~~l~L~N~s~~~v---aFKVKTT~p~---~Y~VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
..|+|.|.+++.+ .|+++=...+ .-+.-|+.=+|.||++++ |+-.
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~Vt--Iws~ 84 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVT--VWAA 84 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEE--EEEG
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE--EEeC
Confidence 5688889887666 5777755332 223356777899999654 5543
No 44
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=32.60 E-value=1.9e+02 Score=25.58 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=36.2
Q ss_pred eEeEEEEEcCCCCeEEEEeccCCCccE--EEeCCeeEE-CCCCeEEEEEEecC
Q 031011 27 GFCDLKVINNTEHHVAFKVKTTSPKKY--FVRPNTGVV-QPWDSCIIRVTLQA 76 (167)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y--~VrP~~GiI-~Pg~s~~I~V~l~~ 76 (167)
.+-.-+++|.+...-.|+++.+.|.-. .|.|..=.+ ..||+..+.|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 344557899999999999998887654 456776555 45777777777654
No 45
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=30.12 E-value=1.4e+02 Score=22.44 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=39.6
Q ss_pred eeEeEEEEEcCCC-----CeEEEEeccCCCcc-EEEeCCeeEECCCCeEEEEEEecC
Q 031011 26 QGFCDLKVINNTE-----HHVAFKVKTTSPKK-YFVRPNTGVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 26 ~~~~~l~L~N~s~-----~~vaFKVKTT~p~~-Y~VrP~~GiI~Pg~s~~I~V~l~~ 76 (167)
.....|+|+|+.+ .-++|.++...... --+.|..|.|.++.+..|.|-..-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 3468899999976 55799999877443 467789999999999888776643
No 46
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=29.87 E-value=1.2e+02 Score=20.00 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.3
Q ss_pred EcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEEEe
Q 031011 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (167)
Q Consensus 12 v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l 74 (167)
.+|..|+.+. ++ +-.+.++|.......|-+.... + ...+.||++..+.++.
T Consensus 35 f~p~~i~v~~--G~--~V~~~~~n~d~~~H~~~i~~~~-----~---~~~i~pG~~~~~~f~~ 85 (112)
T 1iby_A 35 NEPETLVVKK--GD--AVKVVVENKSPISEGFSIDAFG-----V---QEVIKAGETKTISFTA 85 (112)
T ss_dssp EESCEEEEET--TC--EEEEEEEECSSSCEEEEEGGGT-----E---EEEECTTCEEEEEEEC
T ss_pred EcCCEEEEeC--CC--EEEEEEEECCCCeEEEEEcCCC-----c---eeEeCCCCEEEEEEEC
Confidence 4566666542 33 4677889988667777766432 1 4579999998888864
No 47
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=29.79 E-value=35 Score=24.23 Aligned_cols=62 Identities=2% Similarity=0.049 Sum_probs=36.5
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCe-----EEEEeccCCC--------------ccEEE--eC----CeeEECC
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTSP--------------KKYFV--RP----NTGVVQP 64 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~p--------------~~Y~V--rP----~~GiI~P 64 (167)
+.++|++|..+.-+ + +-+|+++|.+.-+ .-|-|-.... ..|.- .+ ...+|.|
T Consensus 13 m~F~p~~i~V~~G~-~--~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~p 89 (129)
T 1cuo_A 13 MTYSTRSISVPASC-A--EFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGG 89 (129)
T ss_dssp SCCSCSEEEEETTC-S--EEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCT
T ss_pred ceEccCeEEEcCCC-e--EEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECC
Confidence 45677777775421 2 4789999998643 4444443220 01100 01 2357899
Q ss_pred CCeEEEEEEe
Q 031011 65 WDSCIIRVTL 74 (167)
Q Consensus 65 g~s~~I~V~l 74 (167)
|++..|.++.
T Consensus 90 Get~svtf~~ 99 (129)
T 1cuo_A 90 GEKTSVKFKV 99 (129)
T ss_dssp TCEEEEEEEG
T ss_pred CCEEEEEEec
Confidence 9999999986
No 48
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.27 E-value=58 Score=20.27 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=16.2
Q ss_pred EEEEEcCCCCeEEEEeccCCC
Q 031011 30 DLKVINNTEHHVAFKVKTTSP 50 (167)
Q Consensus 30 ~l~L~N~s~~~vaFKVKTT~p 50 (167)
.|+++....+.+.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 567777777888888887764
No 49
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=28.66 E-value=1.2e+02 Score=20.79 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=32.0
Q ss_pred eEeEEEEEcCCCCeEE-EEeccC-----------------CCccEEEeCC--eeEECC-CCeEEEEEEec
Q 031011 27 GFCDLKVINNTEHHVA-FKVKTT-----------------SPKKYFVRPN--TGVVQP-WDSCIIRVTLQ 75 (167)
Q Consensus 27 ~~~~l~L~N~s~~~va-FKVKTT-----------------~p~~Y~VrP~--~GiI~P-g~s~~I~V~l~ 75 (167)
....++|+|.++.+|. ++|.=+ +-..|.++|. -|-|+| |+++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4678889998766543 333322 2367888864 488999 99777665543
No 50
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=28.01 E-value=82 Score=23.24 Aligned_cols=45 Identities=7% Similarity=0.115 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCeE---EEEeccC-C--CccEEEeCCeeEECCCCeEEEEEEec
Q 031011 29 CDLKVINNTEHHV---AFKVKTT-S--PKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 29 ~~l~L~N~s~~~v---aFKVKTT-~--p~~Y~VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
..|+|.|.+++.+ .|+|+=. . ...-+.-|..=+|.||+++ .|+-.
T Consensus 50 efV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tV--tIws~ 100 (151)
T 1ufg_A 50 KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVV--TIWAS 100 (151)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEE--EEEES
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEE--EEEeC
Confidence 4688888887665 4777643 2 2233335677789999965 45544
No 51
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=27.85 E-value=1e+02 Score=22.28 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=37.8
Q ss_pred eEeEEEEEcCCC-----CeEEEEeccCCCccE-EEeCCeeEECCCCeEEEEEEec
Q 031011 27 GFCDLKVINNTE-----HHVAFKVKTTSPKKY-FVRPNTGVVQPWDSCIIRVTLQ 75 (167)
Q Consensus 27 ~~~~l~L~N~s~-----~~vaFKVKTT~p~~Y-~VrP~~GiI~Pg~s~~I~V~l~ 75 (167)
....|+++|+.+ .-++|.++......- -+.|..|.|.++.+..+.|-..
T Consensus 41 ~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 41 YLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp EEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 468899999876 457999998775444 5668889999999888777654
No 52
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=27.23 E-value=94 Score=21.55 Aligned_cols=48 Identities=6% Similarity=-0.031 Sum_probs=33.5
Q ss_pred CceeEeEEEEEcCCCCe--EEEEeccCCCccEEEeCC----ee-EECCCCeEEEE
Q 031011 24 EKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN----TG-VVQPWDSCIIR 71 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~----~G-iI~Pg~s~~I~ 71 (167)
+...+..+.|+|.++.+ +.||+-==+.+-+.|.|. .- .|.++++..|.
T Consensus 37 ~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~ 91 (112)
T 3o0l_A 37 AGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVT 91 (112)
T ss_dssp GGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEE
T ss_pred CCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEE
Confidence 45668999999998877 788887667777777754 22 36666654443
No 53
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=27.04 E-value=53 Score=22.93 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=34.6
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEc--CCCCeEEEEeccCC----------------------CccEEEeCCeeEECCCC
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVIN--NTEHHVAFKVKTTS----------------------PKKYFVRPNTGVVQPWD 66 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N--~s~~~vaFKVKTT~----------------------p~~Y~VrP~~GiI~Pg~ 66 (167)
.++|..|.++. ++ +-.++++| .+....-|-+.... .+..++......|.||+
T Consensus 29 ~F~P~~i~v~~--G~--tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~ 104 (140)
T 1qhq_A 29 AFAQTSLSLPA--NT--VVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGE 104 (140)
T ss_dssp SBSCSEEEEET--TC--EEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTE
T ss_pred eEeCCeEEECC--CC--EEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCc
Confidence 34566666643 32 56788999 44444444443211 01122333346789999
Q ss_pred eEEEEEEec
Q 031011 67 SCIIRVTLQ 75 (167)
Q Consensus 67 s~~I~V~l~ 75 (167)
+..+.+++.
T Consensus 105 ~~~~~~~~~ 113 (140)
T 1qhq_A 105 SGSVTFRTP 113 (140)
T ss_dssp EEEEEEECC
T ss_pred eeEEEEEeC
Confidence 999988863
No 54
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=25.63 E-value=54 Score=26.21 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=34.1
Q ss_pred CceeEeEEEEEcCCCCeE-EEEeccCCCccEEEeCC----e-eEECCCCeEEEEEEecC
Q 031011 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYFVRPN----T-GVVQPWDSCIIRVTLQA 76 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~VrP~----~-GiI~Pg~s~~I~V~l~~ 76 (167)
+..+.-.|+++|.+..++ -|.|+-+ .+.|-+.|. . .-|+||++.++.|-+..
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~ 111 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNT 111 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEES
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeeec
Confidence 345678899999988775 4444443 223333332 1 34999999999888764
No 55
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=24.96 E-value=59 Score=22.61 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=36.9
Q ss_pred EcCCeEEEeccCCceeEeEEEEEcCCCCeEEE----EeccCCC---------ccEEEeCCee---EECCCCeEEEEEEec
Q 031011 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (167)
Q Consensus 12 v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaF----KVKTT~p---------~~Y~VrP~~G---iI~Pg~s~~I~V~l~ 75 (167)
+.+.++..+. + ..+..|+++|++|+||-- -.==+++ .-|+..=+.| -.+||++.+|...-.
T Consensus 8 ~~~g~I~lN~--g-r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~LV~~ 84 (101)
T 4ep8_B 8 VKPGQIALNT--G-RATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAF 84 (101)
T ss_dssp CCCSEEECST--T-CCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEEEEC
T ss_pred cCCCcEEEcC--C-CCEEEEEEEeCCCcceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEEEEc
Confidence 3445666653 2 236889999999999852 2222222 2355553333 468888887776644
Q ss_pred C
Q 031011 76 A 76 (167)
Q Consensus 76 ~ 76 (167)
.
T Consensus 85 ~ 85 (101)
T 4ep8_B 85 A 85 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 56
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=23.75 E-value=34 Score=25.66 Aligned_cols=61 Identities=5% Similarity=0.102 Sum_probs=34.2
Q ss_pred EEcCCeEEEeccCCceeEeEEEEEcCCCCe-----EEEEeccCC-------------CccEE------EeCCeeEECCCC
Q 031011 11 SVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------PKKYF------VRPNTGVVQPWD 66 (167)
Q Consensus 11 ~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p~~Y~------VrP~~GiI~Pg~ 66 (167)
.++|.+|..+...+ +-+|+++|.+..+ .-|-|-... ...|. +--..++|.||+
T Consensus 54 ~F~P~~itV~kaG~---~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGe 130 (167)
T 3ay2_A 54 QFNTKDIQVSKACK---EFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGE 130 (167)
T ss_dssp CBSCSEEEEETTCS---SEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTC
T ss_pred eEecceEEEecCCC---EEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCC
Confidence 45666666632222 4679999998653 344443321 00110 111245789999
Q ss_pred eEEEEEEe
Q 031011 67 SCIIRVTL 74 (167)
Q Consensus 67 s~~I~V~l 74 (167)
+..|.++.
T Consensus 131 t~svtf~~ 138 (167)
T 3ay2_A 131 ESSLTLDP 138 (167)
T ss_dssp EEEEEECG
T ss_pred EEEEEEec
Confidence 99998874
No 57
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=23.56 E-value=1.9e+02 Score=20.16 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=42.3
Q ss_pred CCccEEEcCC--eEEEec--cCCceeEeEEEEEcCCCCeE-EEEeccCCCccEEEe--CCee-EECCC--CeEEEEEEe
Q 031011 6 GNQLISVHPE--ELKFIF--ELEKQGFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQPW--DSCIIRVTL 74 (167)
Q Consensus 6 ~~~lL~v~P~--~L~F~~--~~~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-iI~Pg--~s~~I~V~l 74 (167)
+.++...+-+ .+.|.. .......-.+..+|.+..+| -|.++.-.|+.|.++ |..| .|.|+ ..++-.+.+
T Consensus 8 ~~~v~~~~~~~l~I~~~~~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 8 PARTLVNQSPNLKIEFEISRESNSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp -CEEEEEECSSEEEEEEEEECSSSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEEEeCCCCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 3444445544 344433 22333456677789987777 788888888887766 7667 68998 444433333
No 58
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=23.18 E-value=80 Score=22.86 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=38.2
Q ss_pred CCCCCCCccEEEcCCeEEEeccCCc---eeEeEEEEEcCCCCeE-----EEEeccCCCccEEEe--CCee---EECCCCe
Q 031011 1 MTADGGNQLISVHPEELKFIFELEK---QGFCDLKVINNTEHHV-----AFKVKTTSPKKYFVR--PNTG---VVQPWDS 67 (167)
Q Consensus 1 ~~~~~~~~lL~v~P~~L~F~~~~~~---~~~~~l~L~N~s~~~v-----aFKVKTT~p~~Y~Vr--P~~G---iI~Pg~s 67 (167)
|++....--+.+.|..|--...+.. .-...|+|.|.++..+ .|.|.-.+...=.|+ -..| +|.||++
T Consensus 1 m~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~ 80 (134)
T 1tza_A 1 MSALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTA 80 (134)
T ss_dssp --CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEE
T ss_pred CCCccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCc
Confidence 5444444456777766665544333 2378999999998766 355654443333333 1222 5777774
Q ss_pred EE
Q 031011 68 CI 69 (167)
Q Consensus 68 ~~ 69 (167)
..
T Consensus 81 F~ 82 (134)
T 1tza_A 81 YQ 82 (134)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 59
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=23.17 E-value=98 Score=22.56 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.3
Q ss_pred eccCCCccEEEeCCeeEECCCCeEEEEEEecCCCCCCC
Q 031011 45 VKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (167)
Q Consensus 45 VKTT~p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~~~p~ 82 (167)
+++-+|+.=.+.=..-+|.||++..|.+........|-
T Consensus 43 ~n~pSpDLtvisiDk~vL~PGESA~it~IvKDid~nPI 80 (146)
T 2lv4_A 43 SNTPSPDLTVMSIDKSVLSPGESATITTIVKDIDGNPV 80 (146)
T ss_dssp CCCBCGGGCEEECCCCCBCTTCEEEEEEECBBTTSCBC
T ss_pred ecCCCCCcEEEecCccccCCCcceEEEEEEEeCCCCcc
Confidence 34556777778888889999999999999887644443
No 60
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=22.96 E-value=83 Score=20.82 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=18.1
Q ss_pred EeEEEEEcCCCCeEEEEeccCCC
Q 031011 28 FCDLKVINNTEHHVAFKVKTTSP 50 (167)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p 50 (167)
.-.|+++....+.+.|||+.+.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35677888778889999998775
No 61
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=21.33 E-value=1.6e+02 Score=18.31 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=30.2
Q ss_pred EEEcCCeEEEeccCCceeEeEEEEEcCCCCeEEEEeccCCCccEEEeCCeeEECCCCeEEEEE
Q 031011 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (167)
Q Consensus 10 L~v~P~~L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~GiI~Pg~s~~I~V 72 (167)
...+|..|.++. ++ .+++.|.+.....+-+....+... ..+.+.||++..+.+
T Consensus 14 ~~f~P~~i~v~~--Gd----~V~~~n~~~~~H~v~~~~~~~~~~----~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 14 LAFEPSTIEIQA--GD----TVQWVNNKLAPHNVVVEGQPELSH----KDLAFSPGETFEATF 66 (91)
T ss_dssp SSEESSEEEECT--TC----EEEEEECSSCCEEEEETTCGGGCE----EEEECSTTCEEEEEC
T ss_pred cEEeCCEEEECC--CC----EEEEEECCCCCcEEEEeCCCccCc----ccceeCCCCEEEEEe
Confidence 456787777753 32 456778765555555443222111 235788998777654
No 62
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=20.55 E-value=2.6e+02 Score=25.04 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=37.9
Q ss_pred eEeEEEEEcCCCCeEEEEeccCCCccEEE--eCCeeEE-CCCCeEEEEEEecC
Q 031011 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFV--RPNTGVV-QPWDSCIIRVTLQA 76 (167)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V--rP~~GiI-~Pg~s~~I~V~l~~ 76 (167)
.+.+-++||.++..-.|+++...|....| .|..=.. ..||+....|++..
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~ 612 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRY 612 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEE
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEe
Confidence 56777899999888899999999887665 5888766 47888888888765
No 63
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=20.50 E-value=3.6e+02 Score=22.18 Aligned_cols=68 Identities=10% Similarity=0.256 Sum_probs=38.9
Q ss_pred CceeEeEEEEEcCCCCeEEE-E---eccCCCccEEEe-----------------C---CeeEECCCCeEEEEEEecCCCC
Q 031011 24 EKQGFCDLKVINNTEHHVAF-K---VKTTSPKKYFVR-----------------P---NTGVVQPWDSCIIRVTLQAQRE 79 (167)
Q Consensus 24 ~~~~~~~l~L~N~s~~~vaF-K---VKTT~p~~Y~Vr-----------------P---~~GiI~Pg~s~~I~V~l~~~~~ 79 (167)
.....-.++|+|++++++-+ | ...-..+.+.|. | ..=.|.||+++++.+-+...-+
T Consensus 35 ~~~~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla~~yd 114 (343)
T 2x3c_A 35 TDDVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVSGLYD 114 (343)
T ss_dssp SSCCEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECTTTBT
T ss_pred CCCeEEEEEEEeCCCCceEeeccCCCCcCccceEEEEeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehhhccc
Confidence 34556788899998888643 0 011111233332 1 2336889999999888764322
Q ss_pred CCCCCCCCCeEEEEEE
Q 031011 80 SPPDMQCKDKFLLQST 95 (167)
Q Consensus 80 ~p~~~~~~dkF~V~s~ 95 (167)
.....++.|++-
T Consensus 115 ----Ls~gG~y~v~~~ 126 (343)
T 2x3c_A 115 ----MSAQGQYSIRYQ 126 (343)
T ss_dssp ----CCSCEEEEEEEC
T ss_pred ----cCCCceEEEEEe
Confidence 223566776653
No 64
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=20.39 E-value=2.7e+02 Score=25.56 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred eEEEecc--CCceeEeEEEEEcCCC---CeEEEEeccCC----CccEEEeCCeeEECCCCeEEEEEEecCC
Q 031011 16 ELKFIFE--LEKQGFCDLKVINNTE---HHVAFKVKTTS----PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (167)
Q Consensus 16 ~L~F~~~--~~~~~~~~l~L~N~s~---~~vaFKVKTT~----p~~Y~VrP~~GiI~Pg~s~~I~V~l~~~ 77 (167)
.|....+ -+++....++++|+-. ..+.|.|--.. +..+.+ |-|.||+++.+.+.+.|.
T Consensus 597 ~I~v~g~~~v~~~l~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~~----~~v~pg~~~~~~~~~~P~ 663 (692)
T 1vjj_A 597 TLEVLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNLKIDV----PTLGPKERSRVRFDILPS 663 (692)
T ss_dssp EEEECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTSSSCEEEEE----CCBCTTCEEEEEEEECCC
T ss_pred EEEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCCCceEEEc----CccCCCCEEEEEEEEEec
Confidence 3444433 2567889999999976 45577876443 334443 669999999999999985
Done!