BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031012
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R6N|A Chain A, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
           Of The Human Desmoplakin Plakin Domain
 pdb|3R6N|B Chain B, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
           Of The Human Desmoplakin Plakin Domain
          Length = 450

 Score = 29.6 bits (65), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNM--QHLKHEAANMVKKIELLEVSKRKLL 59
           F FF   ++ E YLK  +D+  K+ P ++NM  QHL       +++I+ LE  + K+L
Sbjct: 202 FQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHL-------LEQIKELEKEREKIL 252


>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
 pdb|1GQP|B Chain B, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
          Length = 221

 Score = 26.6 bits (57), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 12 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKL 58
          T + Y+   ++    Q PT +N+QH+ H+   ++    ++ V+   L
Sbjct: 14 TKDLYVNGFQEEIQYQNPTPENLQHMFHQGIEILDSARMINVTHLAL 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,188,030
Number of Sequences: 62578
Number of extensions: 138280
Number of successful extensions: 408
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 18
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)