Query 031012
Match_columns 167
No_of_seqs 126 out of 1097
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 1.8E-24 3.9E-29 155.9 11.3 99 16-119 1-99 (100)
2 KOG0014 MADS box transcription 98.3 3.4E-07 7.3E-12 72.2 2.5 109 1-109 54-189 (195)
3 PF06005 DUF904: Protein of un 94.9 0.27 5.8E-06 33.4 7.8 47 66-117 1-47 (72)
4 PRK15422 septal ring assembly 90.5 2.1 4.6E-05 29.6 7.0 40 66-110 1-40 (79)
5 COG3074 Uncharacterized protei 87.4 5.2 0.00011 27.2 7.1 42 66-112 1-42 (79)
6 PF06698 DUF1192: Protein of u 85.5 1.4 2.9E-05 28.9 3.4 31 57-87 12-42 (59)
7 PF01166 TSC22: TSC-22/dip/bun 85.1 2.4 5.3E-05 27.6 4.4 30 90-119 16-45 (59)
8 cd07429 Cby_like Chibby, a nuc 85.0 1.5 3.3E-05 32.1 3.9 25 95-119 72-96 (108)
9 PF07106 TBPIP: Tat binding pr 83.7 9.5 0.00021 29.4 8.2 50 39-89 116-165 (169)
10 PRK10884 SH3 domain-containing 82.2 20 0.00043 29.0 9.7 78 37-119 91-170 (206)
11 PRK13169 DNA replication intia 81.2 13 0.00027 27.3 7.5 48 68-120 7-54 (110)
12 PF06156 DUF972: Protein of un 80.8 13 0.00029 27.0 7.5 48 68-120 7-54 (107)
13 PF10211 Ax_dynein_light: Axon 80.0 28 0.00061 27.6 10.5 91 8-107 92-182 (189)
14 COG2433 Uncharacterized conser 79.8 48 0.001 31.3 12.3 74 37-119 427-505 (652)
15 PF08317 Spc7: Spc7 kinetochor 79.3 20 0.00044 30.6 9.4 59 61-119 201-261 (325)
16 PF10504 DUF2452: Protein of u 77.7 16 0.00036 28.5 7.5 43 67-109 28-73 (159)
17 smart00787 Spc7 Spc7 kinetocho 76.2 24 0.00053 30.3 8.9 79 41-119 174-256 (312)
18 PF09744 Jnk-SapK_ap_N: JNK_SA 75.4 16 0.00035 28.4 7.0 31 91-121 85-115 (158)
19 PRK11637 AmiB activator; Provi 72.8 67 0.0015 28.4 11.5 78 33-119 48-127 (428)
20 KOG4797 Transcriptional regula 72.5 21 0.00045 26.3 6.4 43 74-116 46-95 (123)
21 PRK13729 conjugal transfer pil 71.2 24 0.00051 32.2 7.9 43 73-120 80-122 (475)
22 PF00170 bZIP_1: bZIP transcri 67.1 29 0.00063 22.3 5.8 35 81-119 16-50 (64)
23 TIGR02449 conserved hypothetic 66.8 35 0.00076 22.7 7.1 50 70-119 1-52 (65)
24 smart00338 BRLZ basic region l 66.6 28 0.0006 22.4 5.7 36 80-119 15-50 (65)
25 KOG4797 Transcriptional regula 64.3 14 0.00031 27.2 4.2 32 88-119 57-91 (123)
26 PF06156 DUF972: Protein of un 63.3 22 0.00048 25.8 5.1 32 89-120 16-47 (107)
27 PF07716 bZIP_2: Basic region 62.3 35 0.00077 21.2 5.8 37 80-120 14-50 (54)
28 TIGR02338 gimC_beta prefoldin, 62.3 55 0.0012 23.4 7.9 46 73-119 60-105 (110)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.1 65 0.0014 23.8 10.4 30 91-120 101-130 (132)
30 cd00632 Prefoldin_beta Prefold 60.1 58 0.0013 23.0 7.8 98 10-119 2-101 (105)
31 PF15254 CCDC14: Coiled-coil d 59.1 95 0.0021 30.2 9.7 81 32-117 387-477 (861)
32 PRK10884 SH3 domain-containing 57.6 77 0.0017 25.6 7.8 18 41-58 88-105 (206)
33 PF14645 Chibby: Chibby family 57.6 18 0.00039 26.6 3.8 26 94-119 70-95 (116)
34 KOG1962 B-cell receptor-associ 57.3 79 0.0017 25.9 7.8 55 66-120 155-211 (216)
35 PF05529 Bap31: B-cell recepto 56.2 78 0.0017 24.7 7.6 52 69-120 125-186 (192)
36 PRK13169 DNA replication intia 53.1 42 0.00091 24.6 5.1 32 89-120 16-47 (110)
37 COG4467 Regulator of replicati 52.6 91 0.002 22.9 7.1 48 68-120 7-54 (114)
38 KOG0709 CREB/ATF family transc 52.3 12 0.00027 33.8 2.6 56 65-120 233-311 (472)
39 PRK00888 ftsB cell division pr 50.1 50 0.0011 23.7 5.1 31 90-120 29-59 (105)
40 PF04880 NUDE_C: NUDE protein, 49.5 37 0.00079 26.7 4.6 46 71-118 2-47 (166)
41 TIGR03752 conj_TIGR03752 integ 49.3 2.1E+02 0.0046 26.2 11.0 73 34-119 68-140 (472)
42 PF02151 UVR: UvrB/uvrC motif; 49.3 45 0.00098 19.1 3.9 34 70-103 3-36 (36)
43 PF10226 DUF2216: Uncharacteri 49.2 74 0.0016 25.6 6.3 33 87-119 47-79 (195)
44 PF14775 NYD-SP28_assoc: Sperm 49.1 71 0.0015 20.7 5.6 40 9-59 21-60 (60)
45 PF15243 ANAPC15: Anaphase-pro 48.7 22 0.00049 25.2 3.0 20 70-89 29-48 (92)
46 PF06005 DUF904: Protein of un 47.4 73 0.0016 21.4 5.3 30 88-117 11-40 (72)
47 KOG4643 Uncharacterized coiled 47.1 1.1E+02 0.0023 30.9 8.1 53 68-120 235-289 (1195)
48 PHA02109 hypothetical protein 47.1 34 0.00073 27.4 4.1 50 45-109 170-221 (233)
49 PF04645 DUF603: Protein of un 46.1 1.5E+02 0.0033 23.6 7.9 31 70-100 139-169 (181)
50 KOG0971 Microtubule-associated 45.8 3.3E+02 0.0072 27.4 11.9 86 33-119 326-427 (1243)
51 PF04977 DivIC: Septum formati 45.7 50 0.0011 21.5 4.3 30 92-121 21-50 (80)
52 PRK09343 prefoldin subunit bet 43.9 1.3E+02 0.0027 22.1 7.1 30 91-120 81-110 (121)
53 KOG0930 Guanine nucleotide exc 42.3 91 0.002 27.0 6.2 44 62-114 7-50 (395)
54 TIGR02976 phageshock_pspB phag 42.3 73 0.0016 21.7 4.6 44 12-55 22-65 (75)
55 PRK10803 tol-pal system protei 42.1 41 0.00088 28.0 4.1 20 41-60 56-75 (263)
56 PF07888 CALCOCO1: Calcium bin 39.5 3.3E+02 0.007 25.5 11.6 21 37-57 162-182 (546)
57 PF04508 Pox_A_type_inc: Viral 38.6 44 0.00096 17.7 2.4 16 40-55 2-17 (23)
58 PF04849 HAP1_N: HAP1 N-termin 38.2 44 0.00096 28.8 3.8 51 69-119 97-184 (306)
59 PF03980 Nnf1: Nnf1 ; InterPr 37.9 1.1E+02 0.0024 21.6 5.4 36 85-120 70-105 (109)
60 cd04787 HTH_HMRTR_unk Helix-Tu 37.8 1.6E+02 0.0035 21.5 7.2 55 65-120 57-111 (133)
61 COG0216 PrfA Protein chain rel 37.1 3E+02 0.0064 24.3 9.7 92 8-115 8-103 (363)
62 KOG0994 Extracellular matrix g 36.7 2.1E+02 0.0046 29.6 8.4 84 4-92 1199-1290(1758)
63 PF12718 Tropomyosin_1: Tropom 36.2 1.9E+02 0.0041 21.8 8.4 49 71-119 82-132 (143)
64 smart00338 BRLZ basic region l 35.5 1.2E+02 0.0026 19.3 5.2 29 90-118 35-63 (65)
65 PF11365 DUF3166: Protein of u 35.5 98 0.0021 22.1 4.6 32 89-120 9-40 (96)
66 PF09903 DUF2130: Uncharacteri 35.0 43 0.00093 28.2 3.1 61 8-75 199-261 (267)
67 TIGR02894 DNA_bind_RsfA transc 34.8 2.2E+02 0.0048 22.3 11.4 57 63-119 77-135 (161)
68 TIGR02338 gimC_beta prefoldin, 34.3 1.7E+02 0.0036 20.8 5.9 16 6-21 2-17 (110)
69 PF04849 HAP1_N: HAP1 N-termin 33.6 3.2E+02 0.0068 23.6 8.5 28 92-119 238-265 (306)
70 KOG4603 TBP-1 interacting prot 33.6 1.3E+02 0.0029 24.0 5.4 55 32-86 79-136 (201)
71 PRK11637 AmiB activator; Provi 33.1 3.4E+02 0.0074 23.9 11.2 74 37-119 45-120 (428)
72 cd07597 BAR_SNX8 The Bin/Amphi 32.1 2E+02 0.0043 23.6 6.6 61 8-87 131-191 (246)
73 cd01109 HTH_YyaN Helix-Turn-He 31.4 1.9E+02 0.0041 20.4 6.5 53 65-118 57-109 (113)
74 TIGR02209 ftsL_broad cell divi 31.0 1.5E+02 0.0033 19.6 4.9 31 90-120 26-56 (85)
75 PF05700 BCAS2: Breast carcino 30.4 2.9E+02 0.0063 22.2 11.1 85 4-88 60-158 (221)
76 PHA03162 hypothetical protein; 30.4 2.4E+02 0.0053 21.4 8.3 69 32-103 13-85 (135)
77 PF06667 PspB: Phage shock pro 29.7 1.6E+02 0.0034 20.1 4.7 24 32-55 42-65 (75)
78 TIGR00012 L29 ribosomal protei 29.6 97 0.0021 19.5 3.5 28 62-89 1-28 (55)
79 PF15397 DUF4618: Domain of un 29.5 3.4E+02 0.0075 22.8 9.4 33 88-120 186-218 (258)
80 PF14988 DUF4515: Domain of un 29.5 3E+02 0.0065 22.1 8.6 79 40-119 86-173 (206)
81 TIGR00606 rad50 rad50. This fa 29.3 6.4E+02 0.014 25.9 12.1 78 38-119 798-881 (1311)
82 PF12537 DUF3735: Protein of u 28.8 1E+02 0.0023 20.4 3.7 25 68-92 47-71 (72)
83 cd00266 MADS_SRF_like SRF-like 28.8 38 0.00082 23.2 1.6 22 1-22 53-75 (83)
84 PF06937 EURL: EURL protein; 28.7 2.3E+02 0.0049 24.2 6.4 43 50-92 203-245 (285)
85 PF05470 eIF-3c_N: Eukaryotic 28.4 5.1E+02 0.011 24.4 10.1 102 9-122 32-135 (595)
86 KOG4603 TBP-1 interacting prot 28.2 3.1E+02 0.0068 21.9 9.1 65 34-100 118-182 (201)
87 PF12548 DUF3740: Sulfatase pr 28.1 1E+02 0.0023 23.6 4.0 39 78-117 97-135 (145)
88 cd04769 HTH_MerR2 Helix-Turn-H 28.1 2.1E+02 0.0046 20.3 5.5 53 64-116 55-107 (116)
89 TIGR01950 SoxR redox-sensitive 28.0 1.9E+02 0.0042 21.7 5.5 55 65-119 57-111 (142)
90 PF08702 Fib_alpha: Fibrinogen 28.0 2.7E+02 0.0059 21.1 8.2 110 8-126 22-135 (146)
91 PF05812 Herpes_BLRF2: Herpesv 27.8 1E+02 0.0022 22.9 3.7 25 96-120 4-28 (118)
92 PF08946 Osmo_CC: Osmosensory 27.8 1.6E+02 0.0034 18.3 4.1 24 88-111 19-42 (46)
93 PRK09413 IS2 repressor TnpA; R 27.8 2.3E+02 0.0051 20.3 6.9 28 92-119 75-102 (121)
94 PF14282 FlxA: FlxA-like prote 27.7 2.3E+02 0.005 20.2 8.9 60 38-114 18-77 (106)
95 cd01108 HTH_CueR Helix-Turn-He 27.7 2.4E+02 0.0052 20.4 7.3 55 64-119 56-110 (127)
96 PF01093 Clusterin: Clusterin; 27.1 1.2E+02 0.0027 27.4 4.8 28 62-89 2-29 (436)
97 COG4467 Regulator of replicati 26.8 1.1E+02 0.0023 22.5 3.6 28 93-120 20-47 (114)
98 PRK04778 septation ring format 26.2 5.2E+02 0.011 23.8 10.6 47 44-90 228-277 (569)
99 PF11629 Mst1_SARAH: C termina 26.2 1E+02 0.0023 19.3 3.0 26 63-88 5-34 (49)
100 PHA03155 hypothetical protein; 26.2 1.1E+02 0.0023 22.7 3.6 24 97-120 10-33 (115)
101 PF05812 Herpes_BLRF2: Herpesv 26.1 2.8E+02 0.006 20.6 8.3 68 33-103 4-75 (118)
102 cd08888 SRPBCC_PITPNA-B_like L 26.1 81 0.0018 26.5 3.3 39 48-86 217-257 (258)
103 PLN02372 violaxanthin de-epoxi 26.0 5E+02 0.011 23.6 9.6 43 41-95 363-405 (455)
104 PF09278 MerR-DNA-bind: MerR, 25.4 1.8E+02 0.0038 18.1 5.6 47 65-112 14-60 (65)
105 PF12252 SidE: Dot/Icm substra 25.3 7.7E+02 0.017 25.5 10.7 69 33-102 1125-1193(1439)
106 PF14584 DUF4446: Protein of u 25.2 2.6E+02 0.0056 21.4 5.8 14 9-22 25-38 (151)
107 KOG3119 Basic region leucine z 25.0 1.8E+02 0.0039 24.3 5.2 31 89-119 223-253 (269)
108 PHA03155 hypothetical protein; 24.9 2.9E+02 0.0063 20.4 8.1 67 33-102 9-75 (115)
109 TIGR01069 mutS2 MutS2 family p 24.9 6.4E+02 0.014 24.4 13.2 25 70-94 540-564 (771)
110 PF09728 Taxilin: Myosin-like 24.5 4.5E+02 0.0097 22.5 10.1 28 92-119 241-268 (309)
111 PF10186 Atg14: UV radiation r 24.4 3.8E+02 0.0083 21.6 11.4 17 40-56 28-44 (302)
112 PHA03162 hypothetical protein; 24.4 1.2E+02 0.0025 23.1 3.6 24 97-120 15-38 (135)
113 PF04999 FtsL: Cell division p 24.4 2.2E+02 0.0048 19.4 4.9 31 90-120 37-67 (97)
114 PF13758 Prefoldin_3: Prefoldi 24.4 2.8E+02 0.006 20.0 5.6 19 33-51 6-24 (99)
115 PF06721 DUF1204: Protein of u 24.4 3.9E+02 0.0084 21.7 9.4 58 34-92 10-73 (228)
116 PF09798 LCD1: DNA damage chec 24.3 4.2E+02 0.0091 25.4 8.0 50 70-119 5-57 (654)
117 COG2433 Uncharacterized conser 24.3 6.1E+02 0.013 24.2 8.8 26 34-59 438-463 (652)
118 PF05010 TACC: Transforming ac 24.2 3.9E+02 0.0084 21.6 10.1 58 4-61 2-59 (207)
119 PF07798 DUF1640: Protein of u 24.2 3.4E+02 0.0073 20.9 7.9 54 66-119 44-97 (177)
120 PF04102 SlyX: SlyX; InterPro 23.8 1.8E+02 0.0039 19.0 4.1 28 33-60 19-46 (69)
121 KOG0804 Cytoplasmic Zn-finger 23.5 5.8E+02 0.013 23.4 10.2 32 85-116 379-410 (493)
122 PF05377 FlaC_arch: Flagella a 23.2 1.7E+02 0.0036 18.8 3.7 25 35-59 17-41 (55)
123 PF05557 MAD: Mitotic checkpoi 23.1 6.6E+02 0.014 23.9 10.1 49 37-85 564-622 (722)
124 smart00030 CLb CLUSTERIN Beta 23.0 3.3E+02 0.0072 22.1 6.1 29 62-90 8-36 (206)
125 KOG0982 Centrosomal protein Nu 22.8 3.2E+02 0.007 24.9 6.6 54 35-88 307-368 (502)
126 TIGR02231 conserved hypothetic 22.7 5.8E+02 0.013 23.1 11.9 49 65-114 123-171 (525)
127 PRK14127 cell division protein 22.6 3.1E+02 0.0067 20.0 6.4 21 37-57 42-62 (109)
128 KOG3366 Mitochondrial F1F0-ATP 22.4 4E+02 0.0086 21.1 6.3 8 96-103 113-120 (172)
129 PF10224 DUF2205: Predicted co 21.8 2.8E+02 0.006 19.1 6.3 28 94-121 36-63 (80)
130 COG3095 MukE Uncharacterized p 21.7 2.9E+02 0.0062 22.3 5.4 49 34-88 115-163 (238)
131 COG1382 GimC Prefoldin, chaper 21.7 2.9E+02 0.0063 20.5 5.2 31 90-120 79-109 (119)
132 cd04770 HTH_HMRTR Helix-Turn-H 21.5 3.1E+02 0.0067 19.5 7.1 53 65-118 57-109 (123)
133 TIGR03185 DNA_S_dndD DNA sulfu 21.5 6.7E+02 0.015 23.4 11.6 19 39-57 398-416 (650)
134 PF04111 APG6: Autophagy prote 21.5 5.2E+02 0.011 22.1 11.0 17 69-85 64-80 (314)
135 PF12329 TMF_DNA_bd: TATA elem 21.4 2.6E+02 0.0057 18.6 4.9 40 78-118 31-70 (74)
136 PRK00295 hypothetical protein; 21.2 2.2E+02 0.0047 18.8 4.1 26 33-58 20-45 (68)
137 PF09006 Surfac_D-trimer: Lung 21.2 1.4E+02 0.0031 18.5 2.9 19 38-56 5-23 (46)
138 cd01282 HTH_MerR-like_sg3 Heli 21.1 3.1E+02 0.0067 19.4 6.0 52 65-117 56-110 (112)
139 KOG3584 cAMP response element 21.1 1.7E+02 0.0036 25.4 4.3 35 81-119 302-336 (348)
140 PRK09039 hypothetical protein; 21.0 5.5E+02 0.012 22.2 9.4 47 39-106 137-183 (343)
141 KOG4643 Uncharacterized coiled 20.9 7.6E+02 0.017 25.2 9.1 20 41-60 532-551 (1195)
142 PRK09514 zntR zinc-responsive 20.7 3.6E+02 0.0078 20.0 5.8 55 65-119 58-112 (140)
143 PRK15422 septal ring assembly 20.6 3E+02 0.0065 19.0 4.8 30 89-118 12-41 (79)
144 PF07407 Seadorna_VP6: Seadorn 20.6 2.7E+02 0.0059 24.6 5.5 45 62-120 25-69 (420)
145 PF15619 Lebercilin: Ciliary p 20.6 3.1E+02 0.0067 21.9 5.6 37 82-118 6-42 (194)
146 PRK04325 hypothetical protein; 20.6 2.2E+02 0.0048 19.0 4.1 26 33-58 24-49 (74)
147 PRK04406 hypothetical protein; 20.4 2.2E+02 0.0048 19.1 4.1 26 33-58 26-51 (75)
148 PRK10227 DNA-binding transcrip 20.3 3.7E+02 0.0079 19.9 7.0 54 65-119 57-110 (135)
149 PF05306 DUF733: Protein of un 20.3 3.2E+02 0.0069 19.2 6.3 35 40-79 26-60 (88)
150 cd04790 HTH_Cfa-like_unk Helix 20.0 3.7E+02 0.008 20.7 5.8 47 65-118 58-104 (172)
151 PRK02793 phi X174 lysis protei 20.0 2.3E+02 0.005 18.8 4.1 26 33-58 23-48 (72)
152 TIGR02043 ZntR Zn(II)-responsi 20.0 3.6E+02 0.0078 19.7 5.6 54 65-119 58-112 (131)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.92 E-value=1.8e-24 Score=155.90 Aligned_cols=99 Identities=39% Similarity=0.559 Sum_probs=92.6
Q ss_pred HHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 16 YLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE 95 (167)
Q Consensus 16 Y~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~ 95 (167)
|++.++...|. ...+.|+.++++|+.+++.|+..+|+|+|+||++||++||+.||++|+.||.+||+||+++|.+
T Consensus 1 Y~~~~~~~~~~-----~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~ 75 (100)
T PF01486_consen 1 YQKQSGTDLWD-----SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLME 75 (100)
T ss_pred CCcccCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 66677666654 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 96 QIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 96 qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
+|+.|++|++.+.++|..|+.++.
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999885
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=98.30 E-value=3.4e-07 Score=72.16 Aligned_cols=109 Identities=33% Similarity=0.390 Sum_probs=80.7
Q ss_pred CcccCCCC--HHHHHHHHHhcccccccCCCCc-HHh--------------H-----HHHHHHHHHHHHHHHHHHHH---h
Q 031012 1 MVLFLFFS--MQETIERYLKHTKDTRNKQQPT-EQN--------------M-----QHLKHEAANMVKKIELLEVS---K 55 (167)
Q Consensus 1 L~efsSsS--M~~ileRY~~~~~~~~~~~~~~-~~~--------------~-----q~~~~e~~~L~~~ie~L~~~---~ 55 (167)
+|+|++++ |..+++||.............. ... . ..+......++...+.+... .
T Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (195)
T KOG0014|consen 54 LYEFGSSDESVDAVVDRFLNLTEPSRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQ 133 (195)
T ss_pred ccccCCcchhHHHHHHHHHhhhhhhhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHH
Confidence 68999986 9999999987655432211100 000 0 12455667777777777644 8
Q ss_pred hHhhCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 031012 56 RKLLGEGLASCTL-EELQQIERQLEKSVSNIRARKNQVFNEQIA-QLKEKGKVLEA 109 (167)
Q Consensus 56 R~l~GEdL~~Ls~-~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~-~Lk~Ke~~L~e 109 (167)
++++|+++.++++ .+|..++.+++.++..+|..+...+..++. .++.++..+..
T Consensus 134 ~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
T KOG0014|consen 134 RKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEA 189 (195)
T ss_pred HHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccc
Confidence 9999999999999 999999999999999999999999988876 55555544443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.92 E-value=0.27 Score=33.42 Aligned_cols=47 Identities=34% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
+|++-|.+||..+..++..|..=| .+++.|+.+...|.++|..|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq-----~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ-----MENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH
Confidence 478899999999999999987544 45666777655444444444443
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.51 E-value=2.1 Score=29.58 Aligned_cols=40 Identities=28% Similarity=0.538 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAE 110 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~ee 110 (167)
+|++=|.+||..+..|+.-|- ++.-+|++||.|-..|.++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999884 5666777888775555554
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.42 E-value=5.2 Score=27.15 Aligned_cols=42 Identities=26% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENT 112 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~ 112 (167)
+|++=|..||..+..|+.-| .|+.-+|++||.|...|..|-.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHH
Confidence 57888999999999999887 4666677788777665444433
No 6
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.48 E-value=1.4 Score=28.90 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=23.5
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012 57 KLLGEGLASCTLEELQQIERQLEKSVSNIRA 87 (167)
Q Consensus 57 ~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~ 87 (167)
+..|+||+.||++||..==..|+.=+.++++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998755556555555554
No 7
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.06 E-value=2.4 Score=27.64 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+.+.++|.+|..+...|+.||..|+..+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467888999999999999999999988665
No 8
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=84.99 E-value=1.5 Score=32.06 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 95 EQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 95 ~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.++..+|+|.+.|+|||+.|+.|++
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999986
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.68 E-value=9.5 Score=29.37 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031012 39 HEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARK 89 (167)
Q Consensus 39 ~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK 89 (167)
..+..|..+++.|+..+..+.+ +-...+.+|...++.....+....|.||
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443 2233444444444444444444444443
No 10
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.18 E-value=20 Score=29.01 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 37 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIR--ARKNQVFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR--~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
...-+..+.++++.++..+..+.++ . -.....+.+.+..+=..|- ....+-+.+++..++.+...|..+|..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666665555443 1 1444445554444433333 3334455667777777777777777777
Q ss_pred HHHhh
Q 031012 115 EEKCG 119 (167)
Q Consensus 115 ~~k~~ 119 (167)
...+.
T Consensus 166 ~~~~~ 170 (206)
T PRK10884 166 QRTII 170 (206)
T ss_pred HHHHH
Confidence 76554
No 11
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.23 E-value=13 Score=27.30 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 68 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 68 ~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
++-|.+||+++..-+..|..-|.+ +..+-.....|.-||..|+.++..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999998888777766644 345666677778888888888875
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.85 E-value=13 Score=27.00 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 68 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 68 ~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
++.|.+||++|..-+..|..-|.+ +..|-..-..|.-||..|+..+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888877777665543 345666666677777777777764
No 13
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.00 E-value=28 Score=27.61 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 87 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~ 87 (167)
.+..+|++|+........-. ....++ .......+..+|..|+.....+..+ +.+|..--..++......+.
T Consensus 92 e~~~~l~~y~~l~~s~~~f~--~rk~l~-~e~~~~~l~~~i~~L~~e~~~L~~~------~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 92 EYRMTLDAYQTLYESSIAFG--MRKALQ-AEQGKQELEEEIEELEEEKEELEKQ------VQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 35677888875544322110 000111 1122455556666666555544331 22333333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031012 88 RKNQVFNEQIAQLKEKGKVL 107 (167)
Q Consensus 88 rK~~ll~~qi~~Lk~Ke~~L 107 (167)
...+...++|+.|++....|
T Consensus 163 ~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 163 EEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555566666555544433
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.79 E-value=48 Score=31.31 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 37 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA-----RKNQVFNEQIAQLKEKGKVLEAEN 111 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~-----rK~~ll~~qi~~Lk~Ke~~L~eeN 111 (167)
+...+.+|..++..|+..+-.|. +++..||.+|+..-.+++. |+.+.+...|..|+++...-...-
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 427 LEETVERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444 7888899999888887763 455567788888887766655555
Q ss_pred HHHHHHhh
Q 031012 112 TRLEEKCG 119 (167)
Q Consensus 112 ~~L~~k~~ 119 (167)
..|..++.
T Consensus 498 e~L~~~l~ 505 (652)
T COG2433 498 EELERKLA 505 (652)
T ss_pred HHHHHHHH
Confidence 66666554
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.27 E-value=20 Score=30.62 Aligned_cols=59 Identities=29% Similarity=0.510 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 61 EGLASCTLEELQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 61 EdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~l--l~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+++.+...+|..|-..|...-..|.++|..+ +..++..++.+...+.++...+...+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999998888888776664 445556666666666666666666554
No 16
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=77.72 E-value=16 Score=28.47 Aligned_cols=43 Identities=30% Similarity=0.387 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 031012 67 TLEELQQIERQLEKSVSNIRAR---KNQVFNEQIAQLKEKGKVLEA 109 (167)
Q Consensus 67 s~~EL~~LE~qLe~sL~~IR~r---K~~ll~~qi~~Lk~Ke~~L~e 109 (167)
+..||..|-++++.|..-||++ |-.+|.+||..|+++-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999986 788999999999988666554
No 17
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.25 E-value=24 Score=30.28 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhHhh--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 41 AANMVKKIELLEVSKRKLL--GEGLASCTLEELQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l~--GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~l--l~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
+..++.....|+...+++. -++++.|..++|..+-..|..-...|..++.++ +.+++..+..+.....+....+..
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444 358889999999999999998888887776653 445555555555555555555555
Q ss_pred Hhh
Q 031012 117 KCG 119 (167)
Q Consensus 117 k~~ 119 (167)
.+.
T Consensus 254 ~I~ 256 (312)
T smart00787 254 EIA 256 (312)
T ss_pred HHH
Confidence 554
No 18
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.37 E-value=16 Score=28.39 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEKCGME 121 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~ 121 (167)
..+..+...|..+...|+.+|..|..++...
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556677788888899999999999887643
No 19
>PRK11637 AmiB activator; Provisional
Probab=72.83 E-value=67 Score=28.36 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQ--VFNEQIAQLKEKGKVLEAE 110 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~--ll~~qi~~Lk~Ke~~L~ee 110 (167)
+.+..+.++..+.+++..++..++.+ ..+|..|+.+|...-..|+....+ .+..+|..++.+...++.+
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666643 345778888888887777665444 4566666666666666555
Q ss_pred HHHHHHHhh
Q 031012 111 NTRLEEKCG 119 (167)
Q Consensus 111 N~~L~~k~~ 119 (167)
-..++..+.
T Consensus 119 l~~~~~~l~ 127 (428)
T PRK11637 119 QAAQERLLA 127 (428)
T ss_pred HHHHHHHHH
Confidence 555555443
No 20
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.49 E-value=21 Score=26.32 Aligned_cols=43 Identities=30% Similarity=0.540 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 74 IERQLEKSVSNIRARKN-------QVFNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 74 LE~qLe~sL~~IR~rK~-------~ll~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
+.+.+|.|+.-|..-=+ +.+.++|.+|..+...|++||..|+.
T Consensus 46 IDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555544333 34455555555555555666665554
No 21
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.25 E-value=24 Score=32.24 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 73 QIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 73 ~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+||++|+.- | +-.++|..+...+++|...+..+|..|+.++..
T Consensus 80 ELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 80 QMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555543 2 233566677778888999999999999999864
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.08 E-value=29 Score=22.25 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 81 SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 81 sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|-.+.|.||...+ ..|..+...|..+|..|...+.
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777776544 4677777777777777766554
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.76 E-value=35 Score=22.69 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 70 ELQQIERQLEKSVSNIRARKNQ--VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK~~--ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
||+.||.+|+.=+.....-+.+ ++..+...++..-..|.+.|..=+.+|.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788898888887776544433 4555555555555555555555555554
No 24
>smart00338 BRLZ basic region leucin zipper.
Probab=66.65 E-value=28 Score=22.39 Aligned_cols=36 Identities=36% Similarity=0.470 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 80 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|..+.|.||... +..|..+...|..+|..|..++.
T Consensus 15 ~aA~~~R~rKk~~----~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 15 EAARRSRERKKAE----IEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667776553 35677777777777777777665
No 25
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=64.34 E-value=14 Score=27.15 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=24.7
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 88 RKNQVF---NEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 88 rK~~ll---~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-|++|| .++++-||.+.+.|.+.|..|...-.
T Consensus 57 VKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 57 VKTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777 47888888888888888888887644
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.26 E-value=22 Score=25.82 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
...-+.++|..||.....|.+||..|+..-..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999998764
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=62.30 E-value=35 Score=21.20 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 80 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.|..+-|.||-..+ ..|..+...|..+|..|..++..
T Consensus 14 ~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 14 EAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677765543 57777788888888888877653
No 28
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.28 E-value=55 Score=23.39 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 73 QIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 73 ~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-+++..+.++..|..|++.+ ...|..+.++...+...-..+..++.
T Consensus 60 lv~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 60 LVKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hheecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777776666544 77788888887777777777776664
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.06 E-value=65 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
..+..+|..++++...|...|..|..+|..
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477889999999999999999999999863
No 30
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.05 E-value=58 Score=22.97 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred HHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHH--HHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012 10 QETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLE--VSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 87 (167)
Q Consensus 10 ~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~--~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~ 87 (167)
..++..|+.+-.....-... -..++....|......+++.+. ..+-.++|.=+=..+.+ .+...+-.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~-~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~----------ea~~~Le~ 70 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQ-RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKE----------EARTELKE 70 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHH----------HHHHHHHH
Confidence 34666676554322211100 1123334455666666666653 33446677744444444 44444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 88 RKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 88 rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++ +.+...|+.+.++...+..+-..++.++.
T Consensus 71 ~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 71 RL-ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 23444555555555555555555555543
No 31
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.12 E-value=95 Score=30.24 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHhh-CC--------CCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSKRKLL-GE--------GLASCTLEELQ-QIERQLEKSVSNIRARKNQVFNEQIAQLK 101 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~R~l~-GE--------dL~~Ls~~EL~-~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk 101 (167)
..+|-++.|.+-|++++..|...+|.-- .+ +++-+++.-|. .|+.||..+++.. +++...-++|-
T Consensus 387 LA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneell 461 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELL 461 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHH
Confidence 4567788898999988888877776521 12 44444444442 4677777776553 23333333333
Q ss_pred HHHHHHHHHHHHHHHH
Q 031012 102 EKGKVLEAENTRLEEK 117 (167)
Q Consensus 102 ~Ke~~L~eeN~~L~~k 117 (167)
+-...+.+||+.|...
T Consensus 462 k~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 462 KVIENQKEENKRLRKM 477 (861)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.63 E-value=77 Score=25.60 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhHh
Q 031012 41 AANMVKKIELLEVSKRKL 58 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l 58 (167)
-..++.++..++..+-.+
T Consensus 88 ~p~~~~rlp~le~el~~l 105 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTL 105 (206)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 345566666666544433
No 33
>PF14645 Chibby: Chibby family
Probab=57.57 E-value=18 Score=26.65 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
......++++.+.|+|||..|+.++.
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888889999999998876
No 34
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.31 E-value=79 Score=25.91 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 66 CTLEELQQIERQLEKSVSNIR--ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR--~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
....|+..|+..++.--...- ..+..-+..|.+.+.+....|.++|..|+.++..
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 345577777777776555432 3344466778888888888899999999998874
No 35
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.23 E-value=78 Score=24.71 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 69 EELQQIERQLEKSVSNIR----------ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 69 ~EL~~LE~qLe~sL~~IR----------~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.+|..+|..++.+-.... ..+.....++|+.++++......+...|++|...
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666555543 2345567889999999888888888888888763
No 36
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.09 E-value=42 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
....+..++..||.....+.+||..|+..-..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999987543
No 37
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.63 E-value=91 Score=22.92 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 68 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 68 ~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
++.+.+||++|-.-+..|-.-|.+ +..+-.....|.-||..|+.++..
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 466788999888777766665543 334444555667777777777775
No 38
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.25 E-value=12 Score=33.84 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-------------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 65 SCTLEELQQIERQLEKSVSNIRAR-------------K----------NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~r-------------K----------~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|.++.+..-|-+-=|..|++||.+ | ...+..+-.+|++|+..|+.+|.-|..++..
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 455555555555556677777654 1 1234455667888888888888888887763
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.05 E-value=50 Score=23.72 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
..-+..++..++++...+..+|..|+.++..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777764
No 40
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.55 E-value=37 Score=26.70 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 71 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 71 L~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
|..+|..+..|+.+-=---.+| ++-+.|+.+.+.|.+|-..|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~EL--dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL--DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888887543333333 344455555556666666666655
No 41
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.32 E-value=2.1e+02 Score=26.20 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 34 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 113 (167)
Q Consensus 34 ~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~ 113 (167)
+..++.++..|..+++.|..+...+. +....+.++++.+|...|. -+.++++.|+.....+...-..
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655555442 2334577788888877663 3444667777776667777777
Q ss_pred HHHHhh
Q 031012 114 LEEKCG 119 (167)
Q Consensus 114 L~~k~~ 119 (167)
|..++.
T Consensus 135 l~~~l~ 140 (472)
T TIGR03752 135 LQRRLA 140 (472)
T ss_pred HHHHHh
Confidence 777764
No 42
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=49.32 E-value=45 Score=19.09 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 70 ELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK 103 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~K 103 (167)
.+..|+..+..++..-+--+.-.+.++|..|+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 4677888888888888888888888888888753
No 43
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=49.25 E-value=74 Score=25.65 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 87 ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 87 ~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|+-+....+|..||.-.+.|+++|+.|+.-++
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666777777777778888888887665
No 44
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=49.14 E-value=71 Score=20.67 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 031012 9 MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLL 59 (167)
Q Consensus 9 M~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~ 59 (167)
+..-++||.+.-.. --.+..|...|++++..|+..+++++
T Consensus 21 L~~~l~rY~~vL~~-----------R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 21 LENFLKRYNKVLLD-----------RAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55667888766432 22456788999999999998887753
No 45
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=48.70 E-value=22 Score=25.22 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031012 70 ELQQIERQLEKSVSNIRARK 89 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK 89 (167)
+|.++|++-+.+|..|+.+=
T Consensus 29 EL~~~Eq~~q~Wl~sI~ekd 48 (92)
T PF15243_consen 29 ELQQQEQQHQAWLQSIAEKD 48 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999998764
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.42 E-value=73 Score=21.42 Aligned_cols=30 Identities=33% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 88 RKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 88 rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
.|.+-..+.|..|+.+...|.++|..|...
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e 40 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEE 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 355555666666666666666666666544
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.14 E-value=1.1e+02 Score=30.90 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 68 LEELQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 68 ~~EL~~LE~qLe~sL~~IR~rK~~l--l~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.+||..|-++.+.+=..-+.|=+.+ +.+++++|++-.+.|.++..+|..++..
T Consensus 235 rdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~ 289 (1195)
T KOG4643|consen 235 RDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQK 289 (1195)
T ss_pred hhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4566666666666655555554444 6677777777777777777777777753
No 48
>PHA02109 hypothetical protein
Probab=47.07 E-value=34 Score=27.43 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHhhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 45 VKKIELLEVSKRKLLGEGLASCT--LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEA 109 (167)
Q Consensus 45 ~~~ie~L~~~~R~l~GEdL~~Ls--~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~e 109 (167)
.++|+.++. ...|++|++|+ ++++-.||-.|+ .+.++.-.++.|...+..
T Consensus 170 TE~ID~~~~---~~t~~~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~R~ 221 (233)
T PHA02109 170 TERIDQVER---SHTGENLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNLRA 221 (233)
T ss_pred HHHHHHHHh---ccchhhhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 445666654 55699999987 556666665554 455555566666555543
No 49
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=46.08 E-value=1.5e+02 Score=23.56 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 70 ELQQIERQLEKSVSNIRARKNQVFNEQIAQL 100 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~L 100 (167)
++..|+..|..-++.--.++++|+-+-|..|
T Consensus 139 ~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666665555555555555555444443
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.79 E-value=3.3e+02 Score=27.43 Aligned_cols=86 Identities=16% Similarity=0.309 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-------hHhhCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSK-------RKLLGEGLASCTLEELQQIERQ---LEKSVSNIRARK------NQVFNEQ 96 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~-------R~l~GEdL~~Ls~~EL~~LE~q---Le~sL~~IR~rK------~~ll~~q 96 (167)
..+.++.|+..++.+++.|+..+ -. .|-|....|--++.+||+| |-.+|-+.|.-- .+.+..+
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ke 404 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKE 404 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567777777777776655333 22 3788888999999999975 667777777431 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 031012 97 IAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 97 i~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++..+.....|......|..++.
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555443
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.67 E-value=50 Score=21.47 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCGME 121 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~ 121 (167)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888888888888888888887653
No 52
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.87 E-value=1.3e+02 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+.+...|..|.++...+.+.-..+..++..
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777777777777777777776654
No 53
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.34 E-value=91 Score=26.99 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
+-.+||..|-..|+ +||.||.+|+ ++|+.|+...+..-+|-..+
T Consensus 7 ep~~Ls~~E~~eL~--------~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 7 EPNDLSEEERMELE--------NIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCCHHHHHhHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 34567777665554 6999999987 47999998877665544333
No 54
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=42.28 E-value=73 Score=21.69 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHh
Q 031012 12 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 55 (167)
Q Consensus 12 ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~ 55 (167)
++-.|.+-.+.....+.......+.+...+.+|.++++.|++.+
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567644333322222223455677788999999999998754
No 55
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.06 E-value=41 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhHhhC
Q 031012 41 AANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l~G 60 (167)
...|..+++.|+..++.|.|
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG 75 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRG 75 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888887777
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=39.45 E-value=3.3e+02 Score=25.51 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 031012 37 LKHEAANMVKKIELLEVSKRK 57 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~ 57 (167)
+..++..|+.+++.|+..+++
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444
No 57
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.60 E-value=44 Score=17.72 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 031012 40 EAANMVKKIELLEVSK 55 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~ 55 (167)
|+.+++.+|..|+..+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677777777777654
No 58
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.23 E-value=44 Score=28.80 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 031012 69 EELQQIERQLEKSVSNIRAR------KNQVFN-------------------------------EQIAQLKEKGKVLEAEN 111 (167)
Q Consensus 69 ~EL~~LE~qLe~sL~~IR~r------K~~ll~-------------------------------~qi~~Lk~Ke~~L~eeN 111 (167)
.....||.+|..+...|..- |++|+. -+++.|++|.+.|++||
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 56677888888888777754 444421 23689999999999999
Q ss_pred HHHHHHhh
Q 031012 112 TRLEEKCG 119 (167)
Q Consensus 112 ~~L~~k~~ 119 (167)
..|+....
T Consensus 177 ~~LR~Ea~ 184 (306)
T PF04849_consen 177 EQLRSEAS 184 (306)
T ss_pred HHHHHHHH
Confidence 99999865
No 59
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.88 E-value=1.1e+02 Score=21.58 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 85 IRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 85 IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|++.=......+++.|+.+...+..+|..|..++..
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555778889999999999999999998864
No 60
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=37.76 E-value=1.6e+02 Score=21.55 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|+|++|+..+=.....+-... ..-.+++..++..+.++...+..--..|...+..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589998887644322221111 1223567777777877777777766667666653
No 61
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=37.07 E-value=3e+02 Score=24.35 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 87 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~ 87 (167)
.+..+.+||............. ....++.++.++...|+.... .+.++..++.+|+.+-.-+..
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~------~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~ 71 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVI------SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccc------cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 5788999998765433222111 111234444444444443332 245666677777666555554
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 88 RKN----QVFNEQIAQLKEKGKVLEAENTRLE 115 (167)
Q Consensus 88 rK~----~ll~~qi~~Lk~Ke~~L~eeN~~L~ 115 (167)
.++ ++..++|..++.+...|.++-+.|.
T Consensus 72 ~~D~em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 72 EKDPEMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 5677788888888777777666554
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.75 E-value=2.1e+02 Score=29.60 Aligned_cols=84 Identities=12% Similarity=0.243 Sum_probs=50.9
Q ss_pred cCCC--CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCC------CCCHHHHHHHH
Q 031012 4 FLFF--SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLA------SCTLEELQQIE 75 (167)
Q Consensus 4 fsSs--SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~------~Ls~~EL~~LE 75 (167)
|.|. +|++.|+--+...+.. + ....+++.+....+.|++++..+...+-+. -++|+ .++-+||..|+
T Consensus 1199 y~s~f~~me~kl~~ir~il~~~---s-vs~~~i~~l~~~~~~lr~~l~~~~e~L~~~-E~~Lsdi~~~~~~a~~~LesLq 1273 (1758)
T KOG0994|consen 1199 YASRFLDMEEKLEEIRAILSAP---S-VSAEDIAQLASATESLRRQLQALTEDLPQE-EETLSDITNSLPLAGKDLESLQ 1273 (1758)
T ss_pred hHhHHHHHHHHHHHHHHHhcCC---C-ccHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhhccchhhhhHHHHH
Confidence 4443 6777777666554322 1 124566777777777887776665544432 22333 45568888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031012 76 RQLEKSVSNIRARKNQV 92 (167)
Q Consensus 76 ~qLe~sL~~IR~rK~~l 92 (167)
+..+.-..-++..++++
T Consensus 1274 ~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1274 REFNGLLTTYKELREQL 1290 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87776666666665554
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.15 E-value=1.9e+02 Score=21.83 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 71 LQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 71 L~~LE~qLe~sL~~IR~rK~~l--l~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++.||..|+.+=.+++..-..+ .....+.+.+++..|..+...+-.++.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555555555544433332 233344445555555555555555443
No 64
>smart00338 BRLZ basic region leucin zipper.
Probab=35.54 E-value=1.2e+02 Score=19.33 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
.+.+..+...|+.+...|..++..|...+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778888888888888887654
No 65
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.46 E-value=98 Score=22.15 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.-|+..++.+-|++|...+.++|..|..++..
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999998874
No 66
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=34.96 E-value=43 Score=28.16 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhC--CCCCCCCHHHHHHHH
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG--EGLASCTLEELQQIE 75 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~G--EdL~~Ls~~EL~~LE 75 (167)
-+..|++.|...+... ......+..-...+.+.++.+-....+|.| ..+.+++++.|..++
T Consensus 199 ~~~~~~~~~~~~~~~l-------~ke~~~i~k~~~k~ek~~e~l~~~~~~l~~~~~ki~~~~i~~l~~~~ 261 (267)
T PF09903_consen 199 FIEAIVENFEDMSKDL-------DKEIKAIDKAWKKREKQIEKLLSSTNNLRGANNKIAGLTIKKLTRLN 261 (267)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHhcCC
Confidence 3556666666554322 112233444556666666666655566666 478888888877654
No 67
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.83 E-value=2.2e+02 Score=22.27 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 63 LASCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 63 L~~Ls~~EL~~LE~qLe~sL~~IR~--rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
...+++++....=+++......... .-.+-+..++..|+.+...|..+|..|..++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999877776767654332222 12334556777777777777777777766654
No 68
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.34 E-value=1.7e+02 Score=20.81 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHhccc
Q 031012 6 FFSMQETIERYLKHTK 21 (167)
Q Consensus 6 SsSM~~ileRY~~~~~ 21 (167)
+|.+...+.+|+....
T Consensus 2 ~~~~q~~~~~~q~~q~ 17 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQ 17 (110)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3456677777765543
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.61 E-value=3.2e+02 Score=23.64 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-+..+|-.+++|.+.+--||..|...+.
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3456677777888888888888888765
No 70
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.58 E-value=1.3e+02 Score=24.02 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHhhCC--CCCC-CCHHHHHHHHHHHHHHHHHHH
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSKRKLLGE--GLAS-CTLEELQQIERQLEKSVSNIR 86 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~R~l~GE--dL~~-Ls~~EL~~LE~qLe~sL~~IR 86 (167)
.+.+.+.-++.+|..++..|+.++|.+-.| .|++ ||+++++.=-+.|..-+..-|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888877776654 3443 777777765555555444433
No 71
>PRK11637 AmiB activator; Provisional
Probab=33.12 E-value=3.4e+02 Score=23.89 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 031012 37 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQ--VFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~--ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
.+.++..+++++..++..+..+ -+++..++.+|...-..|.....+ -...+|..++.+...+..+-..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~---------~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQ---------QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444331 124444444444444444333222 24444444444444444444444
Q ss_pred HHHhh
Q 031012 115 EEKCG 119 (167)
Q Consensus 115 ~~k~~ 119 (167)
..++.
T Consensus 116 q~~l~ 120 (428)
T PRK11637 116 EQQQA 120 (428)
T ss_pred HHHHH
Confidence 44444
No 72
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.10 E-value=2e+02 Score=23.58 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 87 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~ 87 (167)
|++.+.+||.+...+ ++..+.++++..+..+-.+.|.. +-.-.|...|+..+..--..|-.
T Consensus 131 S~r~lf~R~~k~~~~-----------------~i~~l~~ri~~~~~kl~~l~~~~--~~~~~e~ekl~~~i~~d~~~i~~ 191 (246)
T cd07597 131 SLRDLFERHEKLSLN-----------------NIQRLLKRIELNKKKLESLRAKP--DVKGAEVDKLEASIIKDKESIAN 191 (246)
T ss_pred HHHHHHHHHHhcccc-----------------cHHHHHHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhccHHHHHH
Confidence 677788888766532 24455555665555555555654 44456777777777554444444
No 73
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.45 E-value=1.9e+02 Score=20.42 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
|+|++|+..+=.....+-..+ ..-..++.+++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTI-PERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888877533222111112 12245677777777777777766666666554
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.04 E-value=1.5e+02 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
..-+..++..++++...+..+|..|+.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888999999999999999998874
No 75
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.42 E-value=2.9e+02 Score=22.22 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred cCCCCHHHHHHHHHhcccccccCC---------CCcHHhHHHHHHHHHHHHHHHHHHHHHhhHh-----hCCCCCCCCHH
Q 031012 4 FLFFSMQETIERYLKHTKDTRNKQ---------QPTEQNMQHLKHEAANMVKKIELLEVSKRKL-----LGEGLASCTLE 69 (167)
Q Consensus 4 fsSsSM~~ileRY~~~~~~~~~~~---------~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l-----~GEdL~~Ls~~ 69 (167)
|.|+-|.+=++|+.+......-+. .....+...|+.-+.+..-.++.+...+.++ .|.+.=-....
T Consensus 60 ~~t~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~ 139 (221)
T PF05700_consen 60 FETPLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNE 139 (221)
T ss_pred ccchhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445678888999876622111100 0001134566666666666665555444432 25554444556
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031012 70 ELQQIERQLEKSVSNIRAR 88 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~r 88 (167)
.|..+...|+..|..+|..
T Consensus 140 ~Le~~~~~le~~l~~~k~~ 158 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKE 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666777766666543
No 76
>PHA03162 hypothetical protein; Provisional
Probab=30.42 E-value=2.4e+02 Score=21.38 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHhhCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSKRKLLGEG----LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK 103 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEd----L~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~K 103 (167)
..++.+..++.+|+-++..|.+.+|+=.|.+ =..|+..+=+-+=. .++++.=+.=.+.|...|..+--+
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~---s~v~~Lts~A~kKIe~KVr~~t~~ 85 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIG---AATAALTRQAAKKIEAKIRHETLK 85 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578899999999999999999998766665 22366665554444 444444444444455555554443
No 77
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.68 E-value=1.6e+02 Score=20.07 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHh
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSK 55 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~ 55 (167)
...+.+...+.+|.++++.|++.+
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888999999999998754
No 78
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=29.65 E-value=97 Score=19.45 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARK 89 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK 89 (167)
||-.+|.+||...-..+...|-..|.++
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888877543
No 79
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.50 E-value=3.4e+02 Score=22.81 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 88 RKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 88 rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+..+.|..+|..-++-+..+.++...|+..+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777664
No 80
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=29.49 E-value=3e+02 Score=22.12 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 031012 40 EAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQL-EKSVSNIRARKNQVFNEQ--------IAQLKEKGKVLEAE 110 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qL-e~sL~~IR~rK~~ll~~q--------i~~Lk~Ke~~L~ee 110 (167)
++..|++++...+..+.-.+. ++..=-+.|=..||+++ +..+..+-.+...-+... +..+-.--+.+..|
T Consensus 86 eI~~Le~e~~~~~~e~~~~l~-~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~E 164 (206)
T PF14988_consen 86 EIQTLEEELEKMRAEHAEKLQ-EAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRE 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433332222 33344456667777777 665555544444443332 33333444556677
Q ss_pred HHHHHHHhh
Q 031012 111 NTRLEEKCG 119 (167)
Q Consensus 111 N~~L~~k~~ 119 (167)
|..|+..+.
T Consensus 165 N~~L~k~L~ 173 (206)
T PF14988_consen 165 NQQLRKELL 173 (206)
T ss_pred HHHHHHHHH
Confidence 777777654
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.26 E-value=6.4e+02 Score=25.87 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 031012 38 KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRAR------KNQVFNEQIAQLKEKGKVLEAEN 111 (167)
Q Consensus 38 ~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~r------K~~ll~~qi~~Lk~Ke~~L~eeN 111 (167)
..++..++++++.|...+.-..+ ..++++|+.-=..++.-+..++.. ..+-+..+|..|+.++..+..+.
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k 873 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666655554442222 247666655544455555555332 22334566777766666655555
Q ss_pred HHHHHHhh
Q 031012 112 TRLEEKCG 119 (167)
Q Consensus 112 ~~L~~k~~ 119 (167)
..+...+.
T Consensus 874 lkl~~~l~ 881 (1311)
T TIGR00606 874 LQIGTNLQ 881 (1311)
T ss_pred HHHHHHHH
Confidence 55555443
No 82
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=28.83 E-value=1e+02 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 68 LEELQQIERQLEKSVSNIRARKNQV 92 (167)
Q Consensus 68 ~~EL~~LE~qLe~sL~~IR~rK~~l 92 (167)
-.|+..+|+.|.....-+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999998764
No 83
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=28.80 E-value=38 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=16.8
Q ss_pred CcccCCCC-HHHHHHHHHhcccc
Q 031012 1 MVLFLFFS-MQETIERYLKHTKD 22 (167)
Q Consensus 1 L~efsSsS-M~~ileRY~~~~~~ 22 (167)
.|.|++++ +..+|+||......
T Consensus 53 ~~~~~~~~~~~~~l~~~~~~~~~ 75 (83)
T cd00266 53 LYVFWPSSEVEGVISRFEVLSAL 75 (83)
T ss_pred cceecCcHHHHHHHHHHhhcCHh
Confidence 36787776 99999999876543
No 84
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.73 E-value=2.3e+02 Score=24.18 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=32.6
Q ss_pred HHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 50 LLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQV 92 (167)
Q Consensus 50 ~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~l 92 (167)
.++...++..=|+|.+|+++||.+|=..|...+..|-..=++.
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~ 245 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQ 245 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788899999999999999988877766665444433
No 85
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.39 E-value=5.1e+02 Score=24.42 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHH--H
Q 031012 9 MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNI--R 86 (167)
Q Consensus 9 M~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~I--R 86 (167)
|+.+|..=+.+.....|. .+..++++|-+.++.-.. ...++.+..+=++-|-.||.-|...+..- +
T Consensus 32 l~~~i~~i~n~~ki~Dw~---------~i~~eFd~L~k~~~K~~~---~~~~~~~P~~yir~l~~Led~v~e~~~~ke~~ 99 (595)
T PF05470_consen 32 LEEIIKQIRNAMKINDWS---------SILTEFDKLNKQLEKSKK---IQQNEGIPRFYIRALVELEDFVNETWADKEAK 99 (595)
T ss_pred HHHHHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHhh---hhhcCCCChhHHHHHHHHHHHHHHHHhhhHhh
Confidence 555555555554444443 344567777776654333 44578899999999999999999866432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031012 87 ARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 122 (167)
Q Consensus 87 ~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~~ 122 (167)
.+-..-=-.-...+|+|.+.-..+....-.++.+.|
T Consensus 100 Kkms~~nakaln~lkQklkK~~k~~e~~i~~yrenP 135 (595)
T PF05470_consen 100 KKMSKNNAKALNTLKQKLKKYNKEYEAQIAKYRENP 135 (595)
T ss_pred hhcCHHhHHHHHHHHHHHHhhhhhHHHHHHHHHhCC
Confidence 222222334567888887777666666666666544
No 86
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.20 E-value=3.1e+02 Score=21.93 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 34 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQL 100 (167)
Q Consensus 34 ~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~L 100 (167)
++.++.++..|++++...+..+.++. ......+.+|-.+.+.--+...+.-|.+|. .+.+=++.+
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d~~ 182 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIIDKL 182 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566677777777777666666654 366778899999999999999999998887 555555544
No 87
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=28.13 E-value=1e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 78 LEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 78 Le~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
|-.+...=|.-|. -|..+|+.|+.|...|.+-...|+.+
T Consensus 97 iY~d~~aWk~hr~-~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 97 IYQDPKAWKDHRL-HIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred hhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444 35779999999999999988888764
No 88
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.05 E-value=2.1e+02 Score=20.34 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 64 ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 64 ~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
-+++++|+..+=.....+-..+-..-..++.++++.+.++.+.+...-..|..
T Consensus 55 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (116)
T cd04769 55 LGFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDA 107 (116)
T ss_pred cCCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888776443332210011111244444444444444444444444433
No 89
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=28.04 E-value=1.9e+02 Score=21.66 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++|++++..+=..+...-......-..++.+++..+.++...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899998887654432111111122245666666777776666666666666554
No 90
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.02 E-value=2.7e+02 Score=21.13 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=54.5
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHH-
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIR- 86 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR- 86 (167)
-|+.+|.+|++-...... .++..-.++.+.......+-..+.-++-.+.. +..+-.....+...+|++..
T Consensus 22 ~i~~~L~k~~~~v~~~i~-------~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~--~~~~n~~i~~~~s~~l~~~~~ 92 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQ-------ELENLLDQISNSTSEAFEYVKNIKDSLRPRQK--QAKPNDNIYNQYSKSLRKMII 92 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHccchHHHHH-------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc--ccCCcccHHHHHHHHHHHHHH
Confidence 599999999877654321 22222233333333333333222222221111 11233344455555554444
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 031012 87 ARKNQ---VFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 126 (167)
Q Consensus 87 ~rK~~---ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~~~~~~ 126 (167)
.++.. -...+|..|+.-.......-..|...+......|.
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck 135 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCK 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333 34455666677777777777777777765554443
No 91
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=27.85 E-value=1e+02 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 96 QIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 96 qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.+++|-.+...|+-||..|+.++..
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678888999999999999999974
No 92
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.84 E-value=1.6e+02 Score=18.29 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 88 RKNQVFNEQIAQLKEKGKVLEAEN 111 (167)
Q Consensus 88 rK~~ll~~qi~~Lk~Ke~~L~eeN 111 (167)
.|.+=+..+|.+|++|...|....
T Consensus 19 qkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC
Confidence 345556788899998877776654
No 93
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.83 E-value=2.3e+02 Score=20.32 Aligned_cols=28 Identities=25% Similarity=0.136 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-..+++..|+++...|..||..|++-+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999988775
No 94
>PF14282 FlxA: FlxA-like protein
Probab=27.72 E-value=2.3e+02 Score=20.19 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 38 KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 38 ~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
...+..|.++|..|+..+..+... .+++.++ +..|.++|..+|..|......+..+...-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888898888888877662 3334433 34677888888888888877665544433
No 95
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=27.69 E-value=2.4e+02 Score=20.44 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 64 ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 64 ~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-++|++|+..+=.....+-... ..-..++..++..+.++...|..-...|...+.
T Consensus 56 ~G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 56 LGFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred cCCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888887543222111111 112356777777777777777766666666554
No 96
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=27.14 E-value=1.2e+02 Score=27.42 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARK 89 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK 89 (167)
+|.+||..--..+..++++||.-|..-|
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK 29 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMK 29 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHH
Confidence 4555555555667777888877776544
No 97
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.84 E-value=1.1e+02 Score=22.54 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 93 FNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 93 l~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+..+|..||+....+.+||..|+..-..
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 4568999999999999999999987653
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.23 E-value=5.2e+02 Score=23.83 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhHhh--CCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Q 031012 44 MVKKIELLEVSKRKLL--GEGLASCTLE-ELQQIERQLEKSVSNIRARKN 90 (167)
Q Consensus 44 L~~~ie~L~~~~R~l~--GEdL~~Ls~~-EL~~LE~qLe~sL~~IR~rK~ 90 (167)
+=.+++.|+.-.|.|. |=.|+.++++ ++..|..++..++..|..-+-
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l 277 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDL 277 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4466777888888888 6788888866 899999999997777665433
No 99
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.17 E-value=1e+02 Score=19.33 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=13.2
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHHHH
Q 031012 63 LASCTLEELQQ----IERQLEKSVSNIRAR 88 (167)
Q Consensus 63 L~~Ls~~EL~~----LE~qLe~sL~~IR~r 88 (167)
|..+|++||++ |..++|.-+..+|.|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677877764 444444444444443
No 100
>PHA03155 hypothetical protein; Provisional
Probab=26.15 E-value=1.1e+02 Score=22.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 97 IAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 97 i~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+++|..+...|.-||..|+.++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888999999999999964
No 101
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=26.13 E-value=2.8e+02 Score=20.62 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLG----EGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK 103 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~G----EdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~K 103 (167)
.++.+..++.+|+-++..|.+.+++=.| .+=.-|+..+=+-+=. .++++.=+.=++.|...+..+-.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~---s~~~~Lss~A~~KIe~kVr~~t~~ 75 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMIT---SAVSKLSSQASKKIEAKVRKLTAK 75 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678889999999999999999999887 5556677776555544 444444444444455555544433
No 102
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=26.05 E-value=81 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.379 Sum_probs=31.7
Q ss_pred HHHHHHHhhHhhC--CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031012 48 IELLEVSKRKLLG--EGLASCTLEELQQIERQLEKSVSNIR 86 (167)
Q Consensus 48 ie~L~~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~sL~~IR 86 (167)
-..+-.-+|++.. ++=-+||++++..+|.+....|.++|
T Consensus 217 r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 217 RRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455566777764 56678999999999999999999987
No 103
>PLN02372 violaxanthin de-epoxidase
Probab=26.01 E-value=5e+02 Score=23.59 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 41 AANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE 95 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~ 95 (167)
+++|.+.++..++.+ ++|..++|++|+.-+..|+..-..++..
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666544 3568899999999999999877776655
No 104
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.38 E-value=1.8e+02 Score=18.12 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENT 112 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~ 112 (167)
|+|++|+..+=.--+.+-..+.... .++..+++.+.++...|..--.
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~ 60 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRA 60 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888776511111111122222 5556666666666555544333
No 105
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=25.29 E-value=7.7e+02 Score=25.48 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKE 102 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~ 102 (167)
.++..-..+.+|++++..|+.+.-+| -.+-+...+-|...||+||+..-.++-.-=---+..+|..|.+
T Consensus 1125 ~ikK~ia~lnnlqqElklLRnEK~Rm-h~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1125 SIKKAIANLNNLQQELKLLRNEKIRM-HSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhh-ccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 34444566788888988888765443 4455569999999999999887665544333334445555554
No 106
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.22 E-value=2.6e+02 Score=21.44 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=7.4
Q ss_pred HHHHHHHHHhcccc
Q 031012 9 MQETIERYLKHTKD 22 (167)
Q Consensus 9 M~~ileRY~~~~~~ 22 (167)
+.++-.||.....+
T Consensus 25 l~kl~r~Y~~lm~g 38 (151)
T PF14584_consen 25 LRKLKRRYDALMRG 38 (151)
T ss_pred HHHHHHHHHHHhCC
Confidence 45555566555443
No 107
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.00 E-value=1.8e+02 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|...+..+-+.|+.++..|..++..|+.-+.
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665544
No 108
>PHA03155 hypothetical protein; Provisional
Probab=24.88 E-value=2.9e+02 Score=20.43 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKE 102 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~ 102 (167)
.++.+..|+.+|+-++..|...+++=.+.+=.-|+..+=.-+=...-.+|... =.+.|...+...--
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~---A~~KIe~kVrk~~~ 75 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKK---AEEKIRERVLKDLL 75 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 56788899999999999999999876565556677776655544444444443 34444444444433
No 109
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.86 E-value=6.4e+02 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 70 ELQQIERQLEKSVSNIRARKNQVFN 94 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK~~ll~ 94 (167)
++..+.+.++.-...++.+|.+++.
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~ 564 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKL 564 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 110
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.51 E-value=4.5e+02 Score=22.45 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-+..+|+.+.++.+.|..+|..|+.+..
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999876
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.45 E-value=3.8e+02 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031012 40 EAANMVKKIELLEVSKR 56 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~R 56 (167)
++..++...+.|+..+-
T Consensus 28 ~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 112
>PHA03162 hypothetical protein; Provisional
Probab=24.41 E-value=1.2e+02 Score=23.08 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 97 IAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 97 i~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+++|..+...|+-||..|+.++..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999999999999964
No 113
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.37 E-value=2.2e+02 Score=19.44 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
...+..+++.+++....+.++|..|+-++..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567999999999999999999988763
No 114
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=24.36 E-value=2.8e+02 Score=19.98 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELL 51 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L 51 (167)
..+.|..|+..|+.+|+.|
T Consensus 6 hWq~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 6 HWQTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999888
No 115
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=24.35 E-value=3.9e+02 Score=21.70 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 031012 34 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLE------ELQQIERQLEKSVSNIRARKNQV 92 (167)
Q Consensus 34 ~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~------EL~~LE~qLe~sL~~IR~rK~~l 92 (167)
+.+...+++.++..++.|- .+|-.||++++.++.+ -...||..+-.--++.|+++..-
T Consensus 10 ~~s~s~~a~~~k~~~~~la-~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~ 73 (228)
T PF06721_consen 10 VESASKEAAHAKSEHATLA-YQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINY 73 (228)
T ss_pred HHHHhHHhhhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777764 5677788888887654 23457777767777777766553
No 116
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=24.35 E-value=4.2e+02 Score=25.36 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 70 ELQQIERQLEKSVSNIRARKNQV---FNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 70 EL~~LE~qLe~sL~~IR~rK~~l---l~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|..|+++-+.=+...+.++..+ ..+|++.||.-...|++|++-|.-...
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r 57 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELR 57 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777666666666666553 467888888889999999988887765
No 117
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=6.1e+02 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhh
Q 031012 34 MQHLKHEAANMVKKIELLEVSKRKLL 59 (167)
Q Consensus 34 ~q~~~~e~~~L~~~ie~L~~~~R~l~ 59 (167)
...++.++..|+++|+.|+..+..+.
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777766665443
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=24.25 E-value=3.9e+02 Score=21.64 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=27.2
Q ss_pred cCCCCHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCC
Q 031012 4 FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE 61 (167)
Q Consensus 4 fsSsSM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GE 61 (167)
||...|..+|.+.+.-...............+....+...|..-++.++..+-+|+++
T Consensus 2 ~s~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e 59 (207)
T PF05010_consen 2 YSQKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE 59 (207)
T ss_pred CcHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444666667666644221110000001122233344455555666666677777765
No 119
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.19 E-value=3.4e+02 Score=20.94 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+-.|+.+++..+..++..+|.--.-+-..++..++.....|..+-..|+.++.
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888665555555555555555555555555554443
No 120
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.85 E-value=1.8e+02 Score=19.03 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhC
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~G 60 (167)
.++.++..+....++|+.|++.++.|..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777766666543
No 121
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.52 E-value=5.8e+02 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 85 IRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 85 IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
|-.+|.+-+...++.+.+....+.|+|+.|.+
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444443
No 122
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.23 E-value=1.7e+02 Score=18.83 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhh
Q 031012 35 QHLKHEAANMVKKIELLEVSKRKLL 59 (167)
Q Consensus 35 q~~~~e~~~L~~~ie~L~~~~R~l~ 59 (167)
...+.+...+++.++.+....+.++
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777776666655
No 123
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.11 E-value=6.6e+02 Score=23.89 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCC----------CCHHHHHHHHHHHHHHHHHH
Q 031012 37 LKHEAANMVKKIELLEVSKRKLLGEGLAS----------CTLEELQQIERQLEKSVSNI 85 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~l~GEdL~~----------Ls~~EL~~LE~qLe~sL~~I 85 (167)
-+..++.|+.+++.|...++.+.+.+-.. ....|+..|+.+++.+=.+.
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~ 622 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRN 622 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998876443221 22345666666666554333
No 124
>smart00030 CLb CLUSTERIN Beta chain.
Probab=23.03 E-value=3.3e+02 Score=22.14 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=18.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARKN 90 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ 90 (167)
+|..+|..-=.-+.+++++||.-|..-|+
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~ 36 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKT 36 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555677888888887766553
No 125
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.82 E-value=3.2e+02 Score=24.93 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhCCC------CCCCC--HHHHHHHHHHHHHHHHHHHHH
Q 031012 35 QHLKHEAANMVKKIELLEVSKRKLLGEG------LASCT--LEELQQIERQLEKSVSNIRAR 88 (167)
Q Consensus 35 q~~~~e~~~L~~~ie~L~~~~R~l~GEd------L~~Ls--~~EL~~LE~qLe~sL~~IR~r 88 (167)
|.+-.+.+.|+..+..|....-++-|++ |+.++ +.+.++|-..+-..|+++-..
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666665555555544 33332 234444444444455553333
No 126
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.69 E-value=5.8e+02 Score=23.09 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
..++.++..+-.-+...+..++.+... +..++..++++...|+.+-..|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDRE-AERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888887777777777766643 3345555666555555554444
No 127
>PRK14127 cell division protein GpsB; Provisional
Probab=22.65 E-value=3.1e+02 Score=19.96 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 031012 37 LKHEAANMVKKIELLEVSKRK 57 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R~ 57 (167)
+..+...|+.++..|+..+..
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444443
No 128
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=22.42 E-value=4e+02 Score=21.12 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 031012 96 QIAQLKEK 103 (167)
Q Consensus 96 qi~~Lk~K 103 (167)
+|.+|++.
T Consensus 113 ~iq~l~k~ 120 (172)
T KOG3366|consen 113 RIQELEKE 120 (172)
T ss_pred HHHHHHHH
Confidence 34444433
No 129
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.82 E-value=2.8e+02 Score=19.09 Aligned_cols=28 Identities=29% Similarity=0.473 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEKCGME 121 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~ 121 (167)
.+.|+..+..-..|..||..|..-|...
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666899999999988754
No 130
>COG3095 MukE Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.69 E-value=2.9e+02 Score=22.31 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031012 34 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRAR 88 (167)
Q Consensus 34 ~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~r 88 (167)
.|.+..|+..|..+...|+.....-.|.||+. +.|-..+..||++.|.-
T Consensus 115 ~qelydell~lade~kllk~vn~rssgsdldk------qkl~ekvr~sl~rlrrl 163 (238)
T COG3095 115 QQELYDELLTLADEAKLLKLVNNRSTGSDLDR------QKLQEKVRSSLNRLRRL 163 (238)
T ss_pred hHHHHHHHHhHhhHHHHHHHHhccCccccccH------HHHHHHHHHHHHHHHHh
Confidence 35566788899999999998888888988863 66777788888887754
No 131
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=2.9e+02 Score=20.50 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.+.+.-+|..|.+++..+.++-..|+.++..
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999988888888764
No 132
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.51 E-value=3.1e+02 Score=19.50 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
++|++|+..+=.....+-... ..-.+++.+++..+.++...|..-...|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888877644333210001 12245566666666666666666655665544
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.49 E-value=6.7e+02 Score=23.43 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 031012 39 HEAANMVKKIELLEVSKRK 57 (167)
Q Consensus 39 ~e~~~L~~~ie~L~~~~R~ 57 (167)
.++..+..+++.+...++.
T Consensus 398 ~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 398 KELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444443
No 134
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.49 E-value=5.2e+02 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031012 69 EELQQIERQLEKSVSNI 85 (167)
Q Consensus 69 ~EL~~LE~qLe~sL~~I 85 (167)
++|..||++-+.....+
T Consensus 64 ~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 64 QELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445554444433333
No 135
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.45 E-value=2.6e+02 Score=18.65 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 78 LEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 78 Le~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
+...+.+.|+. ..-...+|..++++...+..+-..|...+
T Consensus 31 ~~~~IKKLr~~-~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 31 LNNTIKKLRAK-IKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444432 22233445555555444444444444433
No 136
>PRK00295 hypothetical protein; Provisional
Probab=21.22 E-value=2.2e+02 Score=18.75 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
.++.++..+....++|+.|++.++.|
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666554
No 137
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.21 E-value=1.4e+02 Score=18.49 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 031012 38 KHEAANMVKKIELLEVSKR 56 (167)
Q Consensus 38 ~~e~~~L~~~ie~L~~~~R 56 (167)
++.++.|..++..|+....
T Consensus 5 rqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 5 RQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 138
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.11 E-value=3.1e+02 Score=19.39 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 65 SCTLEELQQIERQLEKSV---SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL---~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
|+|++|+..+=.....+- ... ....+++.+++..+..+...|..--..|...
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887644333221 111 1223666666667766666666555555443
No 139
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=21.07 E-value=1.7e+02 Score=25.36 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 81 SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 81 sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|-+..|.||.+.+ ..|..++..|+.+|+.|-+++.
T Consensus 302 AARECRRKKKEYV----KCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 302 AARECRRKKKEYV----KCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred HHHHHHHhHhHHH----HHHHhHHHHHhcccHHHHHHHH
Confidence 3445555555543 4777777777777777776665
No 140
>PRK09039 hypothetical protein; Validated
Probab=21.04 E-value=5.5e+02 Score=22.19 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 39 HEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKV 106 (167)
Q Consensus 39 ~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~ 106 (167)
.++..|+.+|+.|+.. |..||..|+.+=.+.+..+ .+|+.|+.+...
T Consensus 137 ~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~-----~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQ-----AKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3455556666655544 7777887777776665444 344455544333
No 141
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.86 E-value=7.6e+02 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhHhhC
Q 031012 41 AANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l~G 60 (167)
+..|......++...+++.|
T Consensus 532 ~eeLe~~l~~lE~ENa~Llk 551 (1195)
T KOG4643|consen 532 LEELEELLGNLEEENAHLLK 551 (1195)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444444443
No 142
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=20.73 E-value=3.6e+02 Score=19.98 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++|++|+..+=......-...-..-..++.+++..+.++...|..-...|.....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888876432111000001122356666777777776666665555555443
No 143
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.63 E-value=3e+02 Score=19.01 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
|.+-..+.|.-|+-....|.+.|..|...+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666654
No 144
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=20.62 E-value=2.7e+02 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+|++.|++|+-.|-+ -.+-+..+++.|+.|...| |+..++..+.+
T Consensus 25 ~~~~~~~~e~~aLr~------------EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 25 ELEGVSIDENFALRM------------ENHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred cccccchhhhhhHHH------------HhHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
No 145
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.62 E-value=3.1e+02 Score=21.87 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 82 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 82 L~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
+-+.|.-|..-+..++..++.+...+..||..|+.--
T Consensus 6 vlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777888999999999999999999998753
No 146
>PRK04325 hypothetical protein; Provisional
Probab=20.60 E-value=2.2e+02 Score=19.04 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
.++.++.-+....++|+.|++.++.|
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666554
No 147
>PRK04406 hypothetical protein; Provisional
Probab=20.37 E-value=2.2e+02 Score=19.14 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
.++.++.-+....++|+.|++.++.|
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666655
No 148
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.35 E-value=3.7e+02 Score=19.91 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++|++|+..+=.-...+=... ..-.+++.+++..+..+...|...-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888877654322110001 112345666777777777777776666666554
No 149
>PF05306 DUF733: Protein of unknown function (DUF733); InterPro: IPR007970 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=20.27 E-value=3.2e+02 Score=19.20 Aligned_cols=35 Identities=23% Similarity=0.555 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHH
Q 031012 40 EAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLE 79 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe 79 (167)
-.+++.--.+.+....+ ++..||++||..|...+.
T Consensus 26 S~tKi~LT~eLIa~~~~-----~~~~cs~~dl~~l~RE~~ 60 (88)
T PF05306_consen 26 SRTKIHLTEELIARTKQ-----NLKTCSVDDLKALNRELQ 60 (88)
T ss_pred HHHHHHHHHHHHHHHHH-----hhhhCCHHHHHHHHHHHH
Confidence 34444444455555444 779999999999887665
No 150
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.04 E-value=3.7e+02 Score=20.73 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
|++++|+..+=..-... ...++.+++..+.++...|...-..|...+
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788877753322222 234555566666666665555555555544
No 151
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.04 E-value=2.3e+02 Score=18.82 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
.++.++.-+....++|+.|++.++.|
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777666665
No 152
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.02 E-value=3.6e+02 Score=19.68 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 65 SCTLEELQQIERQLEK-SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~-sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|+|++|+..+=..... +-... ..-..++.+++..+.++...|..-...|...+.
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLSD 112 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889888876553211 10011 122457777788888887777766666666554
Done!