Query 031012
Match_columns 167
No_of_seqs 126 out of 1097
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 96.4 0.00089 3.1E-08 46.5 1.2 24 1-24 53-76 (90)
2 2jee_A YIIU; FTSZ, septum, coi 93.2 0.62 2.1E-05 31.4 7.9 43 66-113 3-45 (81)
3 1dip_A Delta-sleep-inducing pe 81.4 2.5 8.4E-05 28.0 4.5 30 90-119 17-46 (78)
4 2oqq_A Transcription factor HY 78.9 5.9 0.0002 23.2 5.1 28 92-119 14-41 (42)
5 2dgc_A Protein (GCN4); basic d 78.0 6.6 0.00023 24.8 5.7 37 80-120 19-55 (63)
6 2dfs_A Myosin-5A; myosin-V, in 75.2 7 0.00024 37.6 7.4 23 98-120 1019-1041(1080)
7 2yy0_A C-MYC-binding protein; 74.1 7.6 0.00026 23.8 5.0 30 91-120 22-51 (53)
8 2wt7_A Proto-oncogene protein 74.0 11 0.00037 23.6 5.8 35 81-119 13-47 (63)
9 1j1d_C Troponin I, TNI; THIN f 73.3 24 0.00082 25.7 10.3 54 40-93 27-85 (133)
10 1dh3_A Transcription factor CR 72.9 13 0.00043 22.8 5.8 35 82-120 13-47 (55)
11 1t2k_D Cyclic-AMP-dependent tr 71.0 14 0.00048 22.8 5.8 35 81-119 12-46 (61)
12 1jnm_A Proto-oncogene C-JUN; B 69.5 16 0.00053 22.7 5.8 37 80-120 11-47 (62)
13 1j1e_C Troponin I, TNI; THIN f 66.6 41 0.0014 25.7 9.3 68 40-107 27-105 (180)
14 1k6o_B SRF, serum response fac 66.4 0.43 1.5E-05 33.6 -2.3 16 1-16 62-77 (103)
15 1m1j_C Fibrinogen gamma chain; 66.2 23 0.00078 30.4 8.0 48 8-62 24-71 (409)
16 1ci6_A Transcription factor AT 64.9 22 0.00075 22.2 5.8 36 80-119 12-47 (63)
17 3s9g_A Protein hexim1; cyclin 61.8 37 0.0013 23.5 8.3 27 94-120 64-90 (104)
18 3nmd_A CGMP dependent protein 61.2 31 0.0011 22.5 7.2 45 71-120 21-65 (72)
19 2l5g_A GPS2 protein, G protein 57.1 21 0.00071 20.3 4.1 24 94-117 14-37 (38)
20 1ytz_T Troponin T; muscle, THI 55.3 33 0.0011 24.0 5.9 33 61-93 37-69 (107)
21 1gd2_E Transcription factor PA 53.4 42 0.0014 21.6 6.2 40 80-119 18-60 (70)
22 1a93_B MAX protein, coiled coi 52.4 27 0.00091 19.5 4.0 26 87-112 6-31 (34)
23 1j1d_B Troponin T, TNT; THIN f 48.6 31 0.001 24.1 4.8 32 62-93 38-69 (106)
24 1go4_E MAD1 (mitotic arrest de 48.3 7.1 0.00024 27.2 1.4 16 104-119 77-92 (100)
25 1gu4_A CAAT/enhancer binding p 45.2 62 0.0021 21.2 5.8 21 99-119 40-60 (78)
26 3oja_B Anopheles plasmodium-re 45.2 1.5E+02 0.005 25.5 10.7 28 93-120 549-576 (597)
27 2aze_A Transcription factor DP 44.0 97 0.0033 23.0 7.5 50 66-117 2-51 (155)
28 1e52_A Excinuclease ABC subuni 43.7 26 0.0009 22.1 3.5 43 61-103 12-58 (63)
29 1hjb_A Ccaat/enhancer binding 43.6 69 0.0024 21.4 5.8 26 94-119 49-74 (87)
30 2zqm_A Prefoldin beta subunit 40.0 83 0.0028 21.1 7.7 42 78-120 68-109 (117)
31 3gp4_A Transcriptional regulat 39.5 1E+02 0.0034 21.9 7.7 54 65-119 59-112 (142)
32 3s4r_A Vimentin; alpha-helix, 39.4 84 0.0029 21.0 11.3 71 33-119 10-80 (93)
33 1go4_E MAD1 (mitotic arrest de 39.3 39 0.0013 23.4 4.1 24 96-119 13-36 (100)
34 1t2k_D Cyclic-AMP-dependent tr 38.0 68 0.0023 19.5 5.4 30 89-118 30-59 (61)
35 3thf_A Protein shroom; coiled- 36.8 47 0.0016 25.6 4.6 35 82-120 10-44 (190)
36 3na7_A HP0958; flagellar bioge 36.4 1.5E+02 0.0051 23.0 9.4 25 67-91 88-112 (256)
37 2oxj_A Hybrid alpha/beta pepti 35.0 47 0.0016 18.4 3.2 21 98-118 4-24 (34)
38 3a7p_A Autophagy protein 16; c 34.9 1.4E+02 0.0047 22.1 8.5 22 98-119 113-134 (152)
39 4gkw_A Spindle assembly abnorm 34.4 1.2E+02 0.0039 22.2 6.1 84 38-126 59-164 (167)
40 1nkp_B MAX protein, MYC proto- 33.7 94 0.0032 20.0 5.2 38 78-120 42-79 (83)
41 2xdj_A Uncharacterized protein 33.6 40 0.0014 22.4 3.3 17 36-52 31-47 (83)
42 3m9b_A Proteasome-associated A 33.5 88 0.003 25.1 5.9 43 69-116 54-96 (251)
43 2w6a_A ARF GTPase-activating p 32.2 95 0.0032 19.5 8.6 52 65-116 9-62 (63)
44 3m48_A General control protein 32.1 46 0.0016 18.4 2.8 21 99-119 4-24 (33)
45 2l5g_B Putative uncharacterize 31.4 80 0.0027 18.4 4.3 27 32-58 9-35 (42)
46 3q4f_C DNA repair protein XRCC 31.2 56 0.0019 25.0 4.1 25 94-118 160-184 (186)
47 3ghg_A Fibrinogen alpha chain; 31.0 1.3E+02 0.0043 26.9 6.9 20 37-56 122-141 (562)
48 2v71_A Nuclear distribution pr 29.2 1.9E+02 0.0065 22.0 12.8 28 31-58 9-36 (189)
49 3oja_B Anopheles plasmodium-re 28.7 2.7E+02 0.0094 23.7 14.1 21 99-119 562-582 (597)
50 1gk7_A Vimentin; intermediate 28.6 84 0.0029 17.8 5.0 28 92-119 10-37 (39)
51 3na7_A HP0958; flagellar bioge 27.9 2.1E+02 0.0072 22.2 12.9 47 9-60 72-118 (256)
52 1ci6_A Transcription factor AT 27.6 1.1E+02 0.0038 18.8 5.4 30 89-118 31-60 (63)
53 1uii_A Geminin; human, DNA rep 27.5 1.1E+02 0.0037 20.4 4.6 28 91-118 49-76 (83)
54 1t6f_A Geminin; coiled-coil, c 26.5 92 0.0031 17.5 4.4 26 90-115 9-34 (37)
55 3gpv_A Transcriptional regulat 26.5 1.7E+02 0.006 20.7 7.7 56 65-121 73-128 (148)
56 1wlq_A Geminin; coiled-coil; 2 26.4 92 0.0032 20.7 4.1 26 92-117 42-67 (83)
57 1g6u_A Domain swapped dimer; d 26.3 1E+02 0.0034 17.8 6.9 20 64-83 15-34 (48)
58 2lw9_A Unconventionnal myosin- 25.8 60 0.002 19.5 2.8 35 39-74 6-40 (51)
59 3s4r_A Vimentin; alpha-helix, 25.7 1.3E+02 0.0045 20.0 4.9 33 71-103 11-45 (93)
60 1q08_A Zn(II)-responsive regul 25.2 1.4E+02 0.0048 19.2 6.3 55 65-120 16-71 (99)
61 3ghg_A Fibrinogen alpha chain; 25.1 3.7E+02 0.013 23.9 10.7 41 78-119 115-155 (562)
62 4emc_A Monopolin complex subun 24.9 2.3E+02 0.008 21.6 8.2 38 12-52 3-40 (190)
63 3c3f_A Alpha/beta peptide with 24.5 92 0.0031 17.2 3.2 21 98-118 4-24 (34)
64 1am9_A Srebp-1A, protein (ster 24.3 88 0.003 20.2 3.7 24 97-120 52-75 (82)
65 4dzn_A Coiled-coil peptide CC- 23.9 92 0.0032 16.6 3.8 21 35-55 5-25 (33)
66 3s9g_A Protein hexim1; cyclin 23.7 1.8E+02 0.0063 20.0 10.9 86 3-117 9-94 (104)
67 3w03_C DNA repair protein XRCC 23.3 98 0.0034 23.6 4.3 28 92-119 149-176 (184)
68 3anw_B GINS23, putative unchar 22.9 1.4E+02 0.0048 22.4 5.1 49 41-90 82-132 (171)
69 2zxx_A Geminin; coiled-coil, c 22.8 94 0.0032 20.5 3.6 27 91-117 37-63 (79)
70 3efg_A Protein SLYX homolog; x 22.0 1.3E+02 0.0043 19.5 4.1 29 32-60 28-56 (78)
71 3vkg_A Dynein heavy chain, cyt 21.5 5.5E+02 0.019 28.0 10.5 50 69-118 2014-2065(3245)
72 2jee_A YIIU; FTSZ, septum, coi 21.4 1.8E+02 0.0063 19.1 5.4 21 95-115 41-61 (81)
73 2c9l_Y EB1, zebra, BZLF1 trans 21.2 73 0.0025 19.6 2.6 47 13-60 4-50 (63)
74 4hpq_A ATG31, KLTH0C07942P; au 20.8 49 0.0017 21.3 1.8 21 145-166 5-25 (69)
75 1a92_A Delta antigen; leucine 20.0 1.5E+02 0.0052 17.7 5.4 26 89-114 15-40 (50)
76 1p9i_A Cortexillin I/GCN4 hybr 20.0 94 0.0032 16.4 2.5 17 104-120 8-24 (31)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=96.41 E-value=0.00089 Score=46.49 Aligned_cols=24 Identities=8% Similarity=0.229 Sum_probs=20.6
Q ss_pred CcccCCCCHHHHHHHHHhcccccc
Q 031012 1 MVLFLFFSMQETIERYLKHTKDTR 24 (167)
Q Consensus 1 L~efsSsSM~~ileRY~~~~~~~~ 24 (167)
||+|+|++|.+||+||+++.....
T Consensus 53 ~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 53 LFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp EEEEESSCHHHHHHHHHHCCSCCC
T ss_pred EEEeCCCCHHHHHHHHHhcCcccc
Confidence 589999999999999999876443
No 2
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.20 E-value=0.62 Score=31.42 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR 113 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~ 113 (167)
+|++=|.+||..+..++..| .++..+|++||.|...|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999977 45666677777776665444444
No 3
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.42 E-value=2.5 Score=27.96 Aligned_cols=30 Identities=40% Similarity=0.484 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+++.++|.+|..|...|+.||..|+.-..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357889999999999999999999988664
No 4
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.91 E-value=5.9 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
=+.....+|..+...|+.||..|++.+.
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3555678899999999999999998764
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.05 E-value=6.6 Score=24.82 Aligned_cols=37 Identities=32% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 80 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.|-.+.|.||.+.+ ..|..+...|..+|..|..++..
T Consensus 19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788886544 58888888888888888887764
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.25 E-value=7 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 031012 98 AQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 98 ~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+.|+.|...|.++|..|+.++..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999888764
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.14 E-value=7.6 Score=23.78 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+.|..++..|+.|...|.+++..|+.++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999999999999999988763
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.96 E-value=11 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 81 SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 81 sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|..+.|.||.+.+ ..|..+...|..+|..|..++.
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677776544 5777788888888888877765
No 9
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=73.34 E-value=24 Score=25.68 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhHhhC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 40 EAANMVKKIELLEVSKRKLLG-----EGLASCTLEELQQIERQLEKSVSNIRARKNQVF 93 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~R~l~G-----EdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll 93 (167)
=.+.|.++-+.....-+.++. -++++||.++|+.+=+.|...+..+=+-|+.+-
T Consensus 27 A~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 27 AKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345566666666666666665 489999999999999999999999988887764
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.95 E-value=13 Score=22.81 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 82 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 82 L~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
-.+-|.||.. .++.|..+...|..+|..|..++..
T Consensus 13 A~rSR~RKk~----~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 13 ARESRRKKKE----YVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666654 4568888899999999999998864
No 11
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.02 E-value=14 Score=22.83 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 81 SVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 81 sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|..+.|.||.+. +..|..+...|..+|..|..++.
T Consensus 12 AA~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 12 AASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777554 34666677777777777766654
No 12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.53 E-value=16 Score=22.71 Aligned_cols=37 Identities=38% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 80 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
.|..+-|.||.+.+ ..|..+...|..+|..|..++..
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777776554 57888888888888888877653
No 13
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=66.57 E-value=41 Score=25.69 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 031012 40 EAANMVKKIELLEVSKRKLLG-----EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKGKVL 107 (167)
Q Consensus 40 e~~~L~~~ie~L~~~~R~l~G-----EdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~------~qi~~Lk~Ke~~L 107 (167)
=...|.++-+.....-+.++. -+|++|+.++|+.+=++|...+..+=.-|+.+-. -+|..|+.++..|
T Consensus 27 A~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 27 AKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 345566666666666666665 3899999999999999999999999888877643 2456666555544
No 14
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=66.41 E-value=0.43 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=14.3
Q ss_pred CcccCCCCHHHHHHHH
Q 031012 1 MVLFLFFSMQETIERY 16 (167)
Q Consensus 1 L~efsSsSM~~ileRY 16 (167)
+|+|+|++|..||+++
T Consensus 62 ~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 62 VYTFATRKLQPMITSE 77 (103)
T ss_dssp EEEEECGGGGGGTSSH
T ss_pred eeeecCccHHHHHHhh
Confidence 5899999999999973
No 15
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.22 E-value=23 Score=30.43 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCC
Q 031012 8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG 62 (167)
Q Consensus 8 SM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEd 62 (167)
-++++|.+|++...... ..++..-.++.++...+..|...+.....++
T Consensus 24 ~i~d~L~k~e~~V~~~l-------~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGEL-------LEIEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred cHHHHHHHHHhcchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 48999999998665432 3455566677778888777777776665554
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.91 E-value=22 Score=22.24 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 80 KSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|..+-|.+|-+ .+..|..+...|..+|..|..++.
T Consensus 12 ~AA~R~R~KKk~----~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 12 TAATRYRQKKRA----EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666643 334666666666666666666554
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.84 E-value=37 Score=23.53 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
..+|.+|..+...|..||..|+..-.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666667666665443
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.22 E-value=31 Score=22.47 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 71 LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 71 L~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+..|+..|......||.+... |..|.+.......+...|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999888887643 567777777777788888888764
No 19
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.09 E-value=21 Score=20.34 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
.+||..|+.|...|.+|.-+|.-+
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367888888888888888777654
No 20
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.29 E-value=33 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 61 EGLASCTLEELQQIERQLEKSVSNIRARKNQVF 93 (167)
Q Consensus 61 EdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll 93 (167)
-++++|+.++|+.+=++|...+..+=+-|..+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 399999999999999999999999888887764
No 21
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.41 E-value=42 Score=21.57 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 80 KSVSNIRARKNQVFN---EQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 80 ~sL~~IR~rK~~ll~---~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|=...|.||.+-|. .++..|......+..+|..|+.++.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777765443 3444444444445566666666554
No 22
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.38 E-value=27 Score=19.51 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 87 ARKNQVFNEQIAQLKEKGKVLEAENT 112 (167)
Q Consensus 87 ~rK~~ll~~qi~~Lk~Ke~~L~eeN~ 112 (167)
.||..-....|+.|+++...|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 35666667777777777666665543
No 23
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=48.63 E-value=31 Score=24.09 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 62 GLASCTLEELQQIERQLEKSVSNIRARKNQVF 93 (167)
Q Consensus 62 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll 93 (167)
++++||.++|+.+=++|...+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 89999999999999999999999888887764
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.30 E-value=7.1 Score=27.17 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 031012 104 GKVLEAENTRLEEKCG 119 (167)
Q Consensus 104 e~~L~eeN~~L~~k~~ 119 (167)
...|+.|+..|+.++.
T Consensus 77 ~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 77 HSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 25
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.19 E-value=62 Score=21.17 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031012 99 QLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 99 ~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+..+...|..+|..|+.+|.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.16 E-value=1.5e+02 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 93 FNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 93 l~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
+..+++..+++...+.+++..++.++..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666777777666653
No 27
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.00 E-value=97 Score=23.03 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
-|+.|...||..-..-..+|+.+|.+|- ++...+.=-+.|.+.|..+..+
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 3788999999999999999998887653 2222333356778888888764
No 28
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=43.67 E-value=26 Score=22.10 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 61 EGLASCTLEE----LQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK 103 (167)
Q Consensus 61 EdL~~Ls~~E----L~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~K 103 (167)
.+...++.++ +..|++++..+.....--+...+.++|..|+++
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3445555333 667888888888888888888999999999876
No 29
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.62 E-value=69 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
..+-..|+.++..|..|...|+.-+.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 30
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.02 E-value=83 Score=21.13 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 78 LEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 78 Le~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
++.++..+-.++.. +...|+.|.++...+..+-..|..++..
T Consensus 68 ~~ea~~~L~~~~e~-ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIET-LEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555543 3778888888888888888877777764
No 31
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.45 E-value=1e+02 Score=21.93 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++|++++..+=.....+-..+.. ..+++.+++..+.++...|......|..++.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888775544333222222 2346666777777777777666666666654
No 32
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.42 E-value=84 Score=21.03 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 33 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENT 112 (167)
Q Consensus 33 ~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~ 112 (167)
.++.++.-++..-.++..|+...+.+.. ++..|-. +-.++=..++..+|..|+++...+..++.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~---------~i~~l~~-------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLA---------ELEQLKG-------QGKSRLGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhh-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666554421 1222211 11222334688899999999999998888
Q ss_pred HHHHHhh
Q 031012 113 RLEEKCG 119 (167)
Q Consensus 113 ~L~~k~~ 119 (167)
.|..++.
T Consensus 74 ~l~~e~d 80 (93)
T 3s4r_A 74 RVEVERD 80 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 33
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.32 E-value=39 Score=23.36 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 96 QIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 96 qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++..++++...|..||..|+.++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555543
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.96 E-value=68 Score=19.53 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
+...+..+...|+.+...|..++..|+..+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677788888888888888887765
No 35
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=36.78 E-value=47 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 82 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 82 L~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
-+.|..+|.+|+. .|++|...|.++-..|...+..
T Consensus 10 ~~~i~~Kk~ELi~----~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 10 TNLIKQKMDELIK----HLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999874 8999999999888888887754
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.44 E-value=1.5e+02 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 67 TLEELQQIERQLEKSVSNIRARKNQ 91 (167)
Q Consensus 67 s~~EL~~LE~qLe~sL~~IR~rK~~ 91 (167)
+-+|+..|.+.++..-.+|...-.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777666655444
No 37
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.00 E-value=47 Score=18.43 Aligned_cols=21 Identities=33% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031012 98 AQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 98 ~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
..|..|+..|..+|..|..++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 444555555555555555544
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.85 E-value=1.4e+02 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031012 98 AQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 98 ~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
..+..|.+.|++||..|-.++-
T Consensus 113 n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888889988777653
No 39
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.44 E-value=1.2e+02 Score=22.24 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhH--------hhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 031012 38 KHEAANMVKKIELLEVSKRK--------LLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKE------- 102 (167)
Q Consensus 38 ~~e~~~L~~~ie~L~~~~R~--------l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~------- 102 (167)
+.|+.+|+.++..+++..-+ =.-.+-.+|.+..|..||..|-.-=.-| +-+.+.|..|++
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMV-----e~LT~TiG~LrKELEdEkl 133 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMV-----ESLTETIGILRKELENEKL 133 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 45677777777766655432 2223445677777778876653211111 112222222222
Q ss_pred --HH-----HHHHHHHHHHHHHhhcccCCCC
Q 031012 103 --KG-----KVLEAENTRLEEKCGMENWQGS 126 (167)
Q Consensus 103 --Ke-----~~L~eeN~~L~~k~~~~~~~~~ 126 (167)
++ ..|.-||..+..++.++..+-+
T Consensus 134 K~~E~MdSFE~LkvENE~vkerl~mYR~QRf 164 (167)
T 4gkw_A 134 KAAENMDSFEKLSMENENLKEKIAHYRAQRF 164 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhcc
Confidence 11 2366788888888887765554
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.66 E-value=94 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 78 LEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 78 Le~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|..|+.-|+. +..++..|+.....|..+|..|..++..
T Consensus 42 L~~Ai~YI~~-----L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 42 LDKATEYIQY-----MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555553 3445566677777778888888888764
No 41
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.57 E-value=40 Score=22.36 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031012 36 HLKHEAANMVKKIELLE 52 (167)
Q Consensus 36 ~~~~e~~~L~~~ie~L~ 52 (167)
.++.|+..|+-.+|.+.
T Consensus 31 ~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 34444444444444433
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.54 E-value=88 Score=25.08 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 69 EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 69 ~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
+.+.+|+.+++.- ..|.+.|.+.+..++++...|++|+..|..
T Consensus 54 ~~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466666665432 345666777888888888888888888765
No 43
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=32.17 E-value=95 Score=19.45 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 65 SCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKGKVLEAENTRLEE 116 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~--rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~ 116 (167)
..++.|..++-+-|-.|=.+|-. +=..-+.+++.-++++...|+.||..|+.
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 36677777766666555554432 22334567888899999999999999873
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.12 E-value=46 Score=18.36 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031012 99 QLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 99 ~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.|..|+..|..+|..|...+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 455555556666666655543
No 45
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.41 E-value=80 Score=18.36 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
+.++....|+++-+++|..|+..++.+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888899998888887754
No 46
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.19 E-value=56 Score=25.04 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 94 NEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 94 ~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
.+.|.+|+.+...|++||..|...-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999998653
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.04 E-value=1.3e+02 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031012 37 LKHEAANMVKKIELLEVSKR 56 (167)
Q Consensus 37 ~~~e~~~L~~~ie~L~~~~R 56 (167)
++.++......|..||..++
T Consensus 122 LKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333443333
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.23 E-value=1.9e+02 Score=22.04 Aligned_cols=28 Identities=4% Similarity=-0.029 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhHh
Q 031012 31 EQNMQHLKHEAANMVKKIELLEVSKRKL 58 (167)
Q Consensus 31 ~~~~q~~~~e~~~L~~~ie~L~~~~R~l 58 (167)
...+.+|+..+..++.+++.++..+--+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EF 36 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555433
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.75 E-value=2.7e+02 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031012 99 QLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 99 ~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
++++....+..+.+.|..++.
T Consensus 562 ~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444443
No 50
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.60 E-value=84 Score=17.75 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
-+.+.....-.|++.|+.+|..|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556789999999999998875
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.94 E-value=2.1e+02 Score=22.16 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhC
Q 031012 9 MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 9 M~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~G 60 (167)
...-|+||+.-..... + ....+.+..++..++.++..++..+..+|-
T Consensus 72 ~~~ri~~~~~~l~~v~-~----~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 72 TNAKIASIQKKMSEIK-S----ERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHCS-S----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778876654322 1 235567778888888888888887776653
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.57 E-value=1.1e+02 Score=18.82 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
+.+-+..+...|+.+...|..|+..|+.-+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778888888888888887654
No 53
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.47 E-value=1.1e+02 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
+.+.++|+.++.....+.++|..|+.-.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777788887777643
No 54
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.50 E-value=92 Score=17.48 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 90 NQVFNEQIAQLKEKGKVLEAENTRLE 115 (167)
Q Consensus 90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~ 115 (167)
.+.+...|+.-......|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556666666677778888888875
No 55
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.50 E-value=1.7e+02 Score=20.71 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031012 65 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME 121 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~~ 121 (167)
++|++++..+=.....+-..+. .-.+++.+++..+.++...|......|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTIL-HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899988877553333222222 2235778888888888888888888888887643
No 56
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.45 E-value=92 Score=20.75 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
.+.++|+.++.....|.++|..|+.-
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777653
No 57
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.26 E-value=1e+02 Score=17.82 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 031012 64 ASCTLEELQQIERQLEKSVS 83 (167)
Q Consensus 64 ~~Ls~~EL~~LE~qLe~sL~ 83 (167)
+++|.+||-.||..|+.--.
T Consensus 15 egfspeelaaleselqalek 34 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEK 34 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 47899999999987765433
No 58
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=25.82 E-value=60 Score=19.55 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHH
Q 031012 39 HEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQI 74 (167)
Q Consensus 39 ~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~L 74 (167)
.|+.+|.++|+.|++..-.=+ --|..-|..+|+.+
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 467788888888876443211 12334455555544
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.65 E-value=1.3e+02 Score=20.04 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 031012 71 LQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEK 103 (167)
Q Consensus 71 L~~LE~qLe~sL~~IR~--rK~~ll~~qi~~Lk~K 103 (167)
|+.|=..|-.=|.+||. .....+..+|..++.+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555555553 2233444444444443
No 60
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.22 E-value=1.4e+02 Score=19.20 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 65 SCTLEELQQIERQLEKSVS-NIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 65 ~Ls~~EL~~LE~qLe~sL~-~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|||++|+..+=.....+-. .+ ..-..++.+++..+.++...|..-...|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998877442221110 11 1234577777888888888887777777777654
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.05 E-value=3.7e+02 Score=23.94 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 78 LEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 78 Le~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
|+.-+..|+.+=+..+ .+|..||.-++.+..+-+.|..-|.
T Consensus 115 LRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333 5555555555555555555555443
No 62
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.93 E-value=2.3e+02 Score=21.64 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHH
Q 031012 12 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLE 52 (167)
Q Consensus 12 ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~ 52 (167)
-+.+|++......... +.-++.+.+|...|..+++...
T Consensus 3 ~~~~YK~~~q~ql~~a---d~LV~~L~~En~~L~~ql~~k~ 40 (190)
T 4emc_A 3 PLTVYKNSVKQQIDSA---DLLVANLVNENFVLSEKLDTKA 40 (190)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567887766554433 2245667777777777776433
No 63
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.48 E-value=92 Score=17.20 Aligned_cols=21 Identities=14% Similarity=0.149 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031012 98 AQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 98 ~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
..|..|...|..+|..|..++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 344444444444444444443
No 64
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.28 E-value=88 Score=20.24 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 031012 97 IAQLKEKGKVLEAENTRLEEKCGM 120 (167)
Q Consensus 97 i~~Lk~Ke~~L~eeN~~L~~k~~~ 120 (167)
|..|+.....|.+++..|+..+..
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777788888888877753
No 65
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.93 E-value=92 Score=16.63 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031012 35 QHLKHEAANMVKKIELLEVSK 55 (167)
Q Consensus 35 q~~~~e~~~L~~~ie~L~~~~ 55 (167)
-.+++|++.|+++|..|.-.+
T Consensus 5 aalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888777776543
No 66
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.73 E-value=1.8e+02 Score=19.99 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=51.4
Q ss_pred ccCCCCHHHHHHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHH
Q 031012 3 LFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSV 82 (167)
Q Consensus 3 efsSsSM~~ileRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL 82 (167)
+|-+-....+.+||+--.-.. .+ -+.+-+|+..|.+.++.++...+++ +.+....
T Consensus 9 eFl~KdFSe~YE~~h~ErL~~--mS------KqELIqEYl~LE~~~s~le~e~~rl-------------r~~~~~~---- 63 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTESLQN--MS------KQELIKEYLELEKSLSRMEDENNRL-------------RLESKRL---- 63 (104)
T ss_dssp -----CCHHHHHHHHHHHHHT--SC------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cc------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc----
Confidence 344445556777776332111 11 1345567778888888876655432 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 83 SNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 83 ~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
..|.+-+..+|+.|+.....|..+|...+..
T Consensus 64 ----~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 ----DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455567888999999999999999998874
No 67
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.27 E-value=98 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012 92 VFNEQIAQLKEKGKVLEAENTRLEEKCG 119 (167)
Q Consensus 92 ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~ 119 (167)
.+++.+..|+.+...|.++|..|+....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888899999999999999987653
No 68
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=22.89 E-value=1.4e+02 Score=22.41 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhHhhCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 41 AANMVKKIELLEVSKRKLLGEGLASC--TLEELQQIERQLEKSVSNIRARKN 90 (167)
Q Consensus 41 ~~~L~~~ie~L~~~~R~l~GEdL~~L--s~~EL~~LE~qLe~sL~~IR~rK~ 90 (167)
+.+.+.-+..|+..+|+..+.|++++ .+++|..+.+.+ ..|..+|-+|.
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l-~~L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKL-RDLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 56677778999999998887787763 345887776654 35667777774
No 69
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.77 E-value=94 Score=20.49 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 91 QVFNEQIAQLKEKGKVLEAENTRLEEK 117 (167)
Q Consensus 91 ~ll~~qi~~Lk~Ke~~L~eeN~~L~~k 117 (167)
+.+..+|+.++.....|.++|..|..-
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677777666543
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.99 E-value=1.3e+02 Score=19.53 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHhhC
Q 031012 32 QNMQHLKHEAANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 32 ~~~q~~~~e~~~L~~~ie~L~~~~R~l~G 60 (167)
..++.++..+....++|+.|++.++.+.+
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888887777654
No 71
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.49 E-value=5.5e+02 Score=28.02 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031012 69 EELQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKGKVLEAENTRLEEKC 118 (167)
Q Consensus 69 ~EL~~LE~qLe~sL~~IR~rK~~l--l~~qi~~Lk~Ke~~L~eeN~~L~~k~ 118 (167)
++|..+|.+|..+-.+....+.++ +.+.+..|+.+-..+..|...|..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999988888877766654 56667777766555555555554443
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.43 E-value=1.8e+02 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031012 95 EQIAQLKEKGKVLEAENTRLE 115 (167)
Q Consensus 95 ~qi~~Lk~Ke~~L~eeN~~L~ 115 (167)
++.++++.....|..+|..|+
T Consensus 41 ~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 41 QEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 344443333333333333333
No 73
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=21.20 E-value=73 Score=19.63 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhC
Q 031012 13 IERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG 60 (167)
Q Consensus 13 leRY~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~G 60 (167)
|.||+............ -...|.+..=++.-..+++.|..-+|+|.-
T Consensus 4 ~kryknr~asrk~rakf-kn~lqh~r~vaaaks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKF-KQLLQHYREVAAAKSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccchHHHHHHHHhCC
Confidence 56787554432221111 223455555556666788999999998863
No 74
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.76 E-value=49 Score=21.25 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=16.5
Q ss_pred CccccccCCCcccCccCCCCCC
Q 031012 145 ETELFIGPPPERRARRLAIPPQ 166 (167)
Q Consensus 145 ~t~L~ig~p~~~~~~~~~~~~~ 166 (167)
.|..+|.+|. .|-+-|.+||.
T Consensus 5 NttVyVRlPg-~Rp~gFVDPPp 25 (69)
T 4hpq_A 5 NTIVYVRVAG-RARNGFVDPLK 25 (69)
T ss_dssp SCEEEEECSS-CCCSCCCCCCC
T ss_pred CeEEEEEecC-CCCCCCCCCCC
Confidence 5888999997 66567888875
No 75
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.04 E-value=1.5e+02 Score=17.69 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012 89 KNQVFNEQIAQLKEKGKVLEAENTRL 114 (167)
Q Consensus 89 K~~ll~~qi~~Lk~Ke~~L~eeN~~L 114 (167)
|.+-+...+-..+++.+.|+++|-=|
T Consensus 15 k~eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCch
Confidence 44455666677777788888877543
No 76
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=20.01 E-value=94 Score=16.38 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031012 104 GKVLEAENTRLEEKCGM 120 (167)
Q Consensus 104 e~~L~eeN~~L~~k~~~ 120 (167)
...|+.||++|+.++++
T Consensus 8 lasleaenkqlkakvee 24 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567778877777653
Done!