BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031013
(167 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis]
gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis]
Length = 201
Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/181 (83%), Positives = 155/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK+IALQARNAEYNPK
Sbjct: 21 GIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 81 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 141 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 200
Query: 167 Q 167
Q
Sbjct: 201 Q 201
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group]
Length = 190
Score = 298 bits (762), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/188 (81%), Positives = 156/188 (82%), Gaps = 27/188 (14%)
Query: 4 YICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------- 46
YIC L+ A +NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 2 YICMLVCAAK---RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL 58
Query: 47 -------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 99
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG
Sbjct: 59 IFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 118
Query: 100 LAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
LAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVL
Sbjct: 119 LAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVL 178
Query: 160 TEFRKVQQ 167
TEFRKVQQ
Sbjct: 179 TEFRKVQQ 186
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group]
gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 23 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 82
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 83 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 142
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 143 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 202
Query: 167 Q 167
Q
Sbjct: 203 Q 203
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group]
Length = 207
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 23 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 82
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 83 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 142
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 143 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 202
Query: 167 Q 167
Q
Sbjct: 203 Q 203
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 200
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
Length = 200
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
Length = 200
Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis]
Length = 200
Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPA FKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|351727953|ref|NP_001238202.1| TATA-box-binding protein [Glycine max]
gi|3122946|sp|Q42808.1|TBP_SOYBN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1220522|gb|AAA91948.1| TATA-box binding protein [Glycine max]
Length = 200
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|357155673|ref|XP_003577198.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 202
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 22 GIVPMLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 81
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 82 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 141
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRM+QPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKVQ
Sbjct: 142 FSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKVQ 201
Query: 167 Q 167
Q
Sbjct: 202 Q 202
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|135640|sp|P26357.1|TBP_SOLTU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum tuberosum]
Length = 200
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY+HGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|18481630|gb|AAL73490.1|AF464907_1 TATA-binding protein TBP2 [Oryza sativa]
Length = 203
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 23 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 82
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI NIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 83 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRLEGLAYSHGA 142
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 143 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 202
Query: 167 Q 167
Q
Sbjct: 203 Q 203
>gi|414872052|tpg|DAA50609.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 215
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL EFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|974216|emb|CAA62224.1| TATA-box binding protein [Zea mays]
Length = 215
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL EFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|115489282|ref|NP_001067128.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|77556288|gb|ABA99084.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113649635|dbj|BAF30147.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|215736829|dbj|BAG95758.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 208
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 28 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 87
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 88 VCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 147
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 148 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 207
Query: 167 Q 167
Q
Sbjct: 208 Q 208
>gi|356532171|ref|XP_003534647.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|326490497|dbj|BAJ84912.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIV SCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRM+QPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|162459891|ref|NP_001105318.1| TATA-box-binding protein 1 [Zea mays]
gi|1729907|sp|P50158.1|TBP1_MAIZE RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|293904|gb|AAA65941.1| TATA-binding protein [Zea mays]
gi|414872053|tpg|DAA50610.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 200
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL EFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|162459971|ref|NP_001105319.1| TATA-box-binding protein 2 [Zea mays]
gi|1729908|sp|P50159.1|TBP2_MAIZE RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|293906|gb|AAA65942.1| TATA-binding protein [Zea mays]
gi|195604414|gb|ACG24037.1| TATA-binding protein 2 [Zea mays]
gi|238014342|gb|ACR38206.1| unknown [Zea mays]
gi|413933540|gb|AFW68091.1| TATA-binding protein2 [Zea mays]
Length = 200
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL+EFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|413933539|gb|AFW68090.1| TATA-binding protein2, partial [Zea mays]
Length = 205
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL+EFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|297746507|emb|CBI16563.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 152/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|449452638|ref|XP_004144066.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
gi|449493574|ref|XP_004159356.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
Length = 200
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|222617361|gb|EEE53493.1| hypothetical protein OsJ_36653 [Oryza sativa Japonica Group]
Length = 225
Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 28 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 87
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 88 VCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 147
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 148 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQ 207
Query: 167 Q 167
Q
Sbjct: 208 Q 208
>gi|1351224|sp|P48511.1|TBP_MESCR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|841440|gb|AAA80641.1| TATA-binding protein [Mesembryanthemum crystallinum]
Length = 200
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|363814312|ref|NP_001242795.1| uncharacterized protein LOC100810213 [Glycine max]
gi|255644444|gb|ACU22726.1| unknown [Glycine max]
Length = 200
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 152/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFP KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|225435804|ref|XP_002285755.1| PREDICTED: TATA-box-binding protein-like [Vitis vinifera]
Length = 200
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 152/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|224145959|ref|XP_002325828.1| global transcription factor group [Populus trichocarpa]
gi|222862703|gb|EEF00210.1| global transcription factor group [Populus trichocarpa]
Length = 201
Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNLDC+LDLK+IALQARNAEYNPK
Sbjct: 21 GIVPILQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 81 VCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPE+FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 141 FSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 200
Query: 167 Q 167
Q
Sbjct: 201 Q 201
>gi|224123800|ref|XP_002319167.1| global transcription factor group [Populus trichocarpa]
gi|222857543|gb|EEE95090.1| global transcription factor group [Populus trichocarpa]
Length = 202
Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 154/181 (85%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK+IALQARNAEYNPK
Sbjct: 21 GIVPTLQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 81 VCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR+ETYTAFENIYPVLTEFRKVQ
Sbjct: 141 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREETYTAFENIYPVLTEFRKVQ 200
Query: 167 Q 167
Q
Sbjct: 201 Q 201
>gi|48374976|gb|AAT42173.1| TATA sequence-binding protein 2 (TBP-2) [Zea mays]
gi|413933541|gb|AFW68092.1| TATA-binding protein2 [Zea mays]
Length = 392
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/175 (82%), Positives = 150/175 (85%), Gaps = 24/175 (13%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+NIVSTVNLDCKLDLK IALQARNAEYNPK VCTGAK
Sbjct: 173 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 232
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP
Sbjct: 233 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 292
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
ELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL+EFRK+QQ
Sbjct: 293 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQQ 347
>gi|356568214|ref|XP_003552308.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTV+LDCKL+LK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|218187146|gb|EEC69573.1| hypothetical protein OsI_38882 [Oryza sativa Indica Group]
Length = 221
Score = 291 bits (744), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 24 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 83
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 84 VCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 143
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGK+V+TGAKVRDETYTAFENIYPVLTEFRKVQ
Sbjct: 144 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKLVLTGAKVRDETYTAFENIYPVLTEFRKVQ 203
Query: 167 Q 167
Q
Sbjct: 204 Q 204
>gi|356571702|ref|XP_003554013.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 291 bits (744), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 152/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|48374984|gb|AAT42180.1| TATA sequence-binding protein 1 (TBP-1) [Zea mays]
gi|414872054|tpg|DAA50611.1| TPA: TATA sequence-binding protein 1 [Zea mays]
Length = 287
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/176 (83%), Positives = 150/176 (85%), Gaps = 24/176 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIVSTVNLDCKLDLK IALQARNAEYNPK VCTGA
Sbjct: 102 VRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 161
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE
Sbjct: 162 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 221
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
PELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL EFRKVQQ
Sbjct: 222 PELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQQ 277
>gi|417882|sp|Q02879.1|TBP2_WHEAT RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|21877|emb|CAA79268.1| DNA binding protein [Triticum aestivum]
gi|170778|gb|AAA34307.1| DNA-binding protein [Triticum aestivum]
Length = 201
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/181 (80%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 21 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIV SCDVKFPIRLEGLAYSHGA
Sbjct: 81 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGA 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRM+QPKIVLLIFVSGKIV+TGAKVR+ETY+AFENIYPVLTEFRKVQ
Sbjct: 141 FSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYSAFENIYPVLTEFRKVQ 200
Query: 167 Q 167
Q
Sbjct: 201 Q 201
>gi|217075508|gb|ACJ86114.1| unknown [Medicago truncatula]
Length = 200
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 152/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|388512865|gb|AFK44494.1| unknown [Lotus japonicus]
Length = 200
Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 145/181 (80%), Positives = 153/181 (84%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK IALQARNAE+NPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|3122941|sp|P93348.1|TBP_TOBAC RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 147/181 (81%), Positives = 151/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQ SKLAARKYARIIQKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|217075458|gb|ACJ86089.1| unknown [Medicago truncatula]
gi|388502544|gb|AFK39338.1| unknown [Medicago truncatula]
gi|388506912|gb|AFK41522.1| unknown [Medicago truncatula]
Length = 200
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/181 (80%), Positives = 151/181 (83%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKL+LK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QSKLAARKYARIIQKLGFPAKFKDFKIQN+VGSCDVKFPIRLEGLAYSHG
Sbjct: 80 VCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRLEGLAYSHGT 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|297853252|ref|XP_002894507.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
gi|297340349|gb|EFH70766.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 284 bits (727), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/181 (79%), Positives = 150/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+R+ETYTAFENIYPVLTEFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLTEFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|302758308|ref|XP_002962577.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
gi|302824582|ref|XP_002993933.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300138205|gb|EFJ04980.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300169438|gb|EFJ36040.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
Length = 199
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/181 (77%), Positives = 150/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVN+DCKLDLK IAL ARNAEYNPK
Sbjct: 19 GIIPTLQNIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 78
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPA+FKDFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 79 VCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGH 138
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVLTEFRK+Q
Sbjct: 139 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRKMQ 198
Query: 167 Q 167
Q
Sbjct: 199 Q 199
>gi|168052908|ref|XP_001778881.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162669750|gb|EDQ56331.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 200
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/181 (77%), Positives = 150/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVN+DC+LDLKKIALQARNAEYNPK
Sbjct: 20 GIIPTLQNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGF A FKDFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRLEGLAYAHGH 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVLTEFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|168003287|ref|XP_001754344.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162694446|gb|EDQ80794.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 214
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 150/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVN+DC+L+LK IAL ARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPA+FKDFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGH 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVLTEFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|15222732|ref|NP_175948.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|30695955|ref|NP_849812.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|135627|sp|P28148.1|TBP2_ARATH RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|16546|emb|CAA38742.1| transcription initiation factor II [Arabidopsis thaliana]
gi|4204264|gb|AAD10645.1| transcription initiation factor II [Arabidopsis thaliana]
gi|30102756|gb|AAP21296.1| At1g55520 [Arabidopsis thaliana]
gi|39545930|gb|AAR28028.1| TBP2 [Arabidopsis thaliana]
gi|110743161|dbj|BAE99472.1| transcription initiation factor TFIID-2 [Arabidopsis thaliana]
gi|225898024|dbj|BAH30344.1| hypothetical protein [Arabidopsis thaliana]
gi|332195136|gb|AEE33257.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|332195137|gb|AEE33258.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|227073|prf||1613452A transcription initiation factor TFIID-1
Length = 200
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/181 (79%), Positives = 149/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+R+ETYTAFENIYPVL EFRKVQ
Sbjct: 140 FSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|326522452|dbj|BAK07688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNLDC+LDLK+IALQARNAEYNPK
Sbjct: 53 GIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 112
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARI+QKLGFPA FKDFKIQNIV SCDVKFPIRLEGLAYSHGA
Sbjct: 113 VCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGA 172
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLL+FVSGKIV+TGAKVRDE Y AFENIYPVLTE+RK Q
Sbjct: 173 FSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRKSQ 232
Query: 167 Q 167
Q
Sbjct: 233 Q 233
>gi|357146320|ref|XP_003573949.1| PREDICTED: TATA-box-binding protein 1-like [Brachypodium
distachyon]
Length = 235
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNLDC+LDLK+IALQARNAEYNPK
Sbjct: 55 GIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 114
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARI+QKLGFPA FKDFKIQNIV SCDVKFPIRLEGLAYSHGA
Sbjct: 115 VCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGA 174
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLL+FVSGKIV+TGAKVRDE Y AFENIYPVLTE+RK Q
Sbjct: 175 FSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRKSQ 234
Query: 167 Q 167
Q
Sbjct: 235 Q 235
>gi|135641|sp|P26356.1|TBP1_WHEAT RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|21875|emb|CAA42531.1| TATA binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNLDC+LDLK+IALQARNAEYNPK
Sbjct: 53 GIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 112
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARI+QKLGFPA FKDFKIQNIV SCDVKFPIRLEGLAYSHGA
Sbjct: 113 VCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGA 172
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLL+FVSGKIV+TGAKVRDE Y AFENIYPVLTE+RK Q
Sbjct: 173 FSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRKSQ 232
Query: 167 Q 167
Q
Sbjct: 233 Q 233
>gi|339961162|pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
gi|339961163|pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/181 (77%), Positives = 149/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 10 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 69
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 70 VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 129
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+RDETY AFENIYPVL+EFRK+Q
Sbjct: 130 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQ 189
Query: 167 Q 167
Q
Sbjct: 190 Q 190
>gi|15231241|ref|NP_187953.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|135626|sp|P28147.1|TBP1_ARATH RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245867|pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245897|pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245909|pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|11692888|gb|AAG40047.1|AF324696_1 AT3g13445 [Arabidopsis thaliana]
gi|11935207|gb|AAG42019.1|AF327429_1 putative transcription initiation factor TFIID-1 [Arabidopsis
thaliana]
gi|13194816|gb|AAK15570.1|AF349523_1 putative TATA sequence-binding transcription initiation factor
protein [Arabidopsis thaliana]
gi|16548|emb|CAA38743.1| transcription initiation factor II [Arabidopsis thaliana]
gi|9280296|dbj|BAB01751.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|15451056|gb|AAK96799.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|18377408|gb|AAL66870.1| transcription initiation factor TFIID-1 [Arabidopsis thaliana]
gi|21537103|gb|AAM61444.1| transcription initiation factor TFIID-1 (TATA sequence-binding
protein 1) [Arabidopsis thaliana]
gi|39545928|gb|AAR28027.1| TBP1 [Arabidopsis thaliana]
gi|225898637|dbj|BAH30449.1| hypothetical protein [Arabidopsis thaliana]
gi|332641834|gb|AEE75355.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|227074|prf||1613452B transcription initiation factor TFIID-2
Length = 200
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/181 (77%), Positives = 149/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+RDETY AFENIYPVL+EFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|115482150|ref|NP_001064668.1| Os10g0432300 [Oryza sativa Japonica Group]
gi|78708692|gb|ABB47667.1| TATA-box binding protein 1, putative, expressed [Oryza sativa
Japonica Group]
gi|113639277|dbj|BAF26582.1| Os10g0432300 [Oryza sativa Japonica Group]
Length = 223
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDC+LDLKKIALQARNAEYNPK
Sbjct: 42 GIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 101
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 102 VCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 161
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAK R E Y AFEN++PVLTE+RK Q
Sbjct: 162 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQ 221
Query: 167 Q 167
Q
Sbjct: 222 Q 222
>gi|218184579|gb|EEC67006.1| hypothetical protein OsI_33717 [Oryza sativa Indica Group]
Length = 226
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDC+LDLKKIALQARNAEYNPK
Sbjct: 44 GIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 103
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 104 VCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 163
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAK R E Y AFEN++PVLTE+RK Q
Sbjct: 164 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQ 223
Query: 167 Q 167
Q
Sbjct: 224 Q 224
>gi|125574885|gb|EAZ16169.1| hypothetical protein OsJ_31618 [Oryza sativa Japonica Group]
Length = 224
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDC+LDLKKIALQARNAEYNPK
Sbjct: 42 GIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 101
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 102 VCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 161
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAK R E Y AFEN++PVLTE+RK Q
Sbjct: 162 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQ 221
Query: 167 Q 167
Q
Sbjct: 222 Q 222
>gi|297829888|ref|XP_002882826.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
gi|297328666|gb|EFH59085.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
Length = 200
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 148/181 (81%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK+AARKYARI+QKLGF AKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+R+ETY AFENIYPVLTEFRK+Q
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMREETYRAFENIYPVLTEFRKIQ 199
Query: 167 Q 167
Q
Sbjct: 200 Q 200
>gi|339961157|pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
gi|339961158|pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 139/179 (77%), Positives = 147/179 (82%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 8 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 67
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 68 VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 127
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAK+RDETY AFENIYPVL+EFRK+
Sbjct: 128 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI 186
>gi|242034379|ref|XP_002464584.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
gi|241918438|gb|EER91582.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
Length = 218
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 150/181 (82%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDC+LDLK IALQARNAEYNPK
Sbjct: 38 GIVPALQNIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTTALVFASGKM 97
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARI+QKLG+PAKFKDFKIQN+VGSCDVKFPIRLEGLA+SHGA
Sbjct: 98 VCTGAKSEEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRLEGLAFSHGA 157
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FS+YEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAKVR+E YTAFENIYPVLTE+RK Q
Sbjct: 158 FSNYEPELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVREEIYTAFENIYPVLTEYRKCQ 217
Query: 167 Q 167
+
Sbjct: 218 K 218
>gi|302773061|ref|XP_002969948.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
gi|302799318|ref|XP_002981418.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300150958|gb|EFJ17606.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300162459|gb|EFJ29072.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
Length = 196
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/181 (72%), Positives = 146/181 (80%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVN+DCKL+LK IAL ARNAEYNPK
Sbjct: 16 GIVPTLQNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 75
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQ +LAARKYARIIQKLGFP++FKDFKIQNIVGSCDV+FPIRLEGLA+SHG
Sbjct: 76 VCTGAKSEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFSHGH 135
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FS+YEPE+FPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVL EFRK+
Sbjct: 136 FSTYEPEIFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLAEFRKIP 195
Query: 167 Q 167
Q
Sbjct: 196 Q 196
>gi|384501418|gb|EIE91909.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 239
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/182 (71%), Positives = 141/182 (77%), Gaps = 24/182 (13%)
Query: 7 YLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-------------------- 46
Y + G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 57 YAVAGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFA 116
Query: 47 ----VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY 102
V TGAKSE SKLAARKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLAY
Sbjct: 117 SGKMVVTGAKSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDIKFPIRLEGLAY 176
Query: 103 SHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
SHG FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AF+ IYPVLTEF
Sbjct: 177 SHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPVLTEF 236
Query: 163 RK 164
RK
Sbjct: 237 RK 238
>gi|540193|gb|AAA79367.1| TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 258 bits (659), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/180 (72%), Positives = 141/180 (78%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 49 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 108
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 109 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 168
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+EFRK
Sbjct: 169 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 228
>gi|540195|gb|AAA79368.1| TATA binding protein [Pneumocystis wakefieldiae]
Length = 229
Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 140/180 (77%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V S++NIV+TVNLDC+LDLK IALQ RNAEYNPK
Sbjct: 48 VSGIVPSLQNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASG 107
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 108 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 167
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL EFRK
Sbjct: 168 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLNEFRK 227
>gi|328768487|gb|EGF78533.1| Tata-Box binding protein ytbp [Batrachochytrium dendrobatidis
JAM81]
Length = 218
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/178 (73%), Positives = 141/178 (79%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 40 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 99
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 100 VVTGAKSEDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGH 159
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE+IYPVLTEFRK
Sbjct: 160 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFESIYPVLTEFRK 217
>gi|384500347|gb|EIE90838.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 248
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/186 (70%), Positives = 140/186 (75%), Gaps = 24/186 (12%)
Query: 3 PYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------- 46
PY I + +NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 62 PYAVAGITPTLQVFRNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 121
Query: 47 --------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE 98
V TGAKSE SKLAARKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLE
Sbjct: 122 LIFASGKMVVTGAKSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLE 181
Query: 99 GLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
GLAYSHG FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AF+ IYPV
Sbjct: 182 GLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPV 241
Query: 159 LTEFRK 164
LTEFRK
Sbjct: 242 LTEFRK 247
>gi|213401857|ref|XP_002171701.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
gi|211999748|gb|EEB05408.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 231
Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/180 (72%), Positives = 141/180 (78%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 51 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 110
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 111 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 170
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+EFRK
Sbjct: 171 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 230
>gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [Candida tenuis ATCC 10573]
Length = 237
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/179 (72%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
LG V +++NIV+TVNLDCKLDLK IAL ARNAEYNPK
Sbjct: 58 LGIVPTLQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 117
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 118 MVVTGAKSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 177
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 178 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 236
>gi|320582327|gb|EFW96544.1| TATA-binding protein, general transcription factor [Ogataea
parapolymorpha DL-1]
Length = 246
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+L+LK IAL ARNAEYNPK
Sbjct: 68 GIVPTLQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 127
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLAARKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 128 VVTGAKSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGT 187
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 188 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYKAFEAIYPVLSEFRK 245
>gi|149248310|ref|XP_001528542.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146448496|gb|EDK42884.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 248
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 70 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 129
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 130 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 189
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 190 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 247
>gi|294659650|ref|XP_002770623.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
gi|199434124|emb|CAR65957.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
Length = 243
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 65 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 124
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 125 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 184
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 185 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 242
>gi|448112531|ref|XP_004202120.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|448115084|ref|XP_004202744.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359383612|emb|CCE79528.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359465109|emb|CCE88814.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
Length = 241
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 63 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 122
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 123 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 182
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 183 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 240
>gi|260941770|ref|XP_002615051.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
gi|238851474|gb|EEQ40938.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 59 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 118
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 119 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 178
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 179 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 236
>gi|383858146|ref|XP_003704563.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 318
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 140 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 199
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 200 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 259
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 260 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 317
>gi|385301759|gb|EIF45927.1| tata-box binding protein [Dekkera bruxellensis AWRI1499]
Length = 259
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+L+LK IAL ARNAEYNPK
Sbjct: 81 GIVPTLQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 140
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLAARKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 141 VVTGAKSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGT 200
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 201 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYKAFEAIYPVLSEFRK 258
>gi|448513790|ref|XP_003867010.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
gi|380351348|emb|CCG21572.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
Length = 251
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 73 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 132
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 133 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 192
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 193 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 250
>gi|307204782|gb|EFN83340.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 304
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 126 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 185
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL SHG
Sbjct: 186 VCTGAKSEADSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQ 245
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 246 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFDNIYPILKSFKK 303
>gi|380027888|ref|XP_003697647.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 319
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 141 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 201 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 261 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 318
>gi|135634|sp|P26354.1|TBP_ACACA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|5593|emb|CAA44843.1| TFIID [Acanthamoeba castellanii]
gi|155636|gb|AAA27712.1| transcription factor [Acanthamoeba castellanii]
gi|155638|gb|AAA27713.1| TFIID [Acanthamoeba castellanii]
gi|440795312|gb|ELR16441.1| TATAbox-binding protein [Acanthamoeba castellanii str. Neff]
Length = 258
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNL CKLDLK IAL ARNAEYNPK
Sbjct: 80 GIVPTLQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 139
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQNIVGSCDV+FPIRLEGLA++H
Sbjct: 140 VCTGAKSEEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCDVRFPIRLEGLAFAHNH 199
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ SYEPELFPGLIYRM QPKIVLLIFVSGKIV+TGAKVR+E Y AFENIYPVLTE++K
Sbjct: 200 YCSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTEYKKT 258
>gi|66536790|ref|XP_623088.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Apis mellifera]
Length = 319
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 141 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 201 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 261 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 318
>gi|45201230|ref|NP_986800.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|44986084|gb|AAS54624.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|374110049|gb|AEY98954.1| FAGR134Wp [Ashbya gossypii FDAG1]
Length = 239
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK +AL ARNAEYNPK
Sbjct: 61 GIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKL 239
>gi|254566373|ref|XP_002490297.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|238030093|emb|CAY68016.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|328350692|emb|CCA37092.1| TATA-box-binding protein [Komagataella pastoris CBS 7435]
Length = 243
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 65 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 124
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 125 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGH 184
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 185 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYQAFEAIYPVLSEFRK 242
>gi|156392660|ref|XP_001636166.1| predicted protein [Nematostella vectensis]
gi|156223266|gb|EDO44103.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL CKLDLKKIALQARNAEYNPK
Sbjct: 16 GILPQLQNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 75
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QSKLAARKYAR++QKLGFPAKF +FKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 76 VCTGAKSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRLEGLVLAHGQ 135
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 136 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKTFRKT 194
>gi|344305038|gb|EGW35270.1| hypothetical protein SPAPADRAFT_58486 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 68 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 127
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 128 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 187
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 188 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 245
>gi|126274078|ref|XP_001387406.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|126213276|gb|EAZ63383.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
Length = 247
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 140/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 69 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 128
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 129 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 188
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE+IYPVL+EFRK
Sbjct: 189 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFESIYPVLSEFRK 246
>gi|354546879|emb|CCE43611.1| hypothetical protein CPAR2_212550 [Candida parapsilosis]
Length = 259
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 81 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 140
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 141 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 200
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 201 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 258
>gi|358060360|dbj|GAA93765.1| hypothetical protein E5Q_00411 [Mixia osmundae IAM 14324]
Length = 367
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/180 (70%), Positives = 143/180 (79%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+CKLDLK IAL ARNAEYNPK
Sbjct: 187 VHGLVPTLQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 246
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF A+FK+FKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 247 KMVVTGAKSEDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLEGLAYSH 306
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y+AF+ IYPVL+EFRK
Sbjct: 307 GHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYSAFQLIYPVLSEFRK 366
>gi|332374462|gb|AEE62372.1| unknown [Dendroctonus ponderosae]
Length = 318
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 140 GIVPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 199
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H +
Sbjct: 200 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSS 259
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 260 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 317
>gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe 972h-]
gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]
gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]
gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe]
gi|226987|prf||1612348A transcription factor IID
Length = 231
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/180 (70%), Positives = 139/180 (77%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 51 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASG 110
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V G KSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 111 KMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 170
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+EFRK
Sbjct: 171 GTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 230
>gi|50308801|ref|XP_454405.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643540|emb|CAG99492.1| KLLA0E10099p [Kluyveromyces lactis]
Length = 233
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIV+TVNLDC+LDLK +AL ARNAEYNPK
Sbjct: 55 GIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 114
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 115 VVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 174
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 175 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKL 233
>gi|406607792|emb|CCH40897.1| TATA-box-binding protein [Wickerhamomyces ciferrii]
Length = 238
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/179 (71%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 60 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 119
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 120 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGP 179
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL EFRK+
Sbjct: 180 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLNEFRKL 238
>gi|322801294|gb|EFZ21981.1| hypothetical protein SINV_10030 [Solenopsis invicta]
Length = 306
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 128 GILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 187
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL SHG
Sbjct: 188 VCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQ 247
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 248 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILKSFKK 305
>gi|50547559|ref|XP_501249.1| YALI0B23056p [Yarrowia lipolytica]
gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/180 (70%), Positives = 139/180 (77%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 47 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 106
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGA+SE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SH
Sbjct: 107 KMVVTGARSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSH 166
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL EFRK
Sbjct: 167 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLNEFRK 226
>gi|307182447|gb|EFN69682.1| TATA-box-binding protein [Camponotus floridanus]
Length = 305
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 127 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 186
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL SHG
Sbjct: 187 VCTGAKSEGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVGSCDVKFPIRLEGLVLSHGQ 246
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK+R E Y AF+NIYP+L F+K
Sbjct: 247 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILKSFKK 304
>gi|340727525|ref|XP_003402092.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
gi|350422935|ref|XP_003493334.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 314
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/176 (69%), Positives = 138/176 (78%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK VC
Sbjct: 138 LPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 197
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG FS
Sbjct: 198 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 257
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 258 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 313
>gi|332021125|gb|EGI61512.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 305
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 127 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 186
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL SHG
Sbjct: 187 VCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQ 246
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK+R E Y AF+NIYP+L F+K
Sbjct: 247 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILKSFKK 304
>gi|146415198|ref|XP_001483569.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
Length = 240
Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/178 (71%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSG+IV+TGAK R+E Y AFE IYPVL+EFRK
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEIYDAFEAIYPVLSEFRK 239
>gi|112983068|ref|NP_001037059.1| TATA-box-binding protein [Bombyx mori]
gi|14423945|sp|O45211.1|TBP_BOMMO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|3326928|emb|CAA11000.1| TBP [Bombyx mori]
Length = 307
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNLDCKLDLKKIAL ARNAEYNPK
Sbjct: 129 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 189 VCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR+E Y AF+NIYP+L F+K
Sbjct: 249 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSFKK 306
>gi|363753780|ref|XP_003647106.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890742|gb|AET40289.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
Length = 239
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 140/179 (78%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK +AL ARNAEYNPK
Sbjct: 61 GIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKL 239
>gi|3122948|sp|Q92146.1|TBP_TRIGA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|808897|dbj|BAA06554.1| TATA-box binding protein [Trimeresurus gramineus]
gi|1483197|dbj|BAA06560.1| TATA-box binding protein [Trimeresurus gramineus]
Length = 302
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 301
>gi|3122947|sp|Q92117.1|TBP_TRIFL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|1483195|dbj|BAA06555.1| TATA-box binding protein [Trimeresurus flavoviridis]
Length = 300
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 121 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 180
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 181 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 240
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 241 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 299
>gi|1729911|sp|P53360.1|TBP_MESAU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|493654|dbj|BAA06287.1| TBP [Mesocricetus auratus]
Length = 318
Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 139 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 198
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 199 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 258
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 259 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 317
>gi|1729912|sp|P53361.1|TBP_SPOFR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349117|gb|AAA62394.1| DNA-binding protein [Spodoptera frugiperda]
Length = 307
Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 189 VCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR+E Y AF+NIYP+L F+K
Sbjct: 249 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSFKK 306
>gi|291190590|ref|NP_001167145.1| TATA-box-binding protein [Salmo salar]
gi|223648344|gb|ACN10930.1| TATA-box-binding protein [Salmo salar]
Length = 299
Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 120 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 179
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 180 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 239
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 240 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 298
>gi|327262117|ref|XP_003215872.1| PREDICTED: TATA-box-binding protein-like [Anolis carolinensis]
Length = 300
Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 121 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 180
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 181 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 240
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 241 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 299
>gi|328856236|gb|EGG05358.1| hypothetical protein MELLADRAFT_75016 [Melampsora larici-populina
98AG31]
Length = 233
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 125/180 (69%), Positives = 141/180 (78%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+C+LDLK IAL ARNAEYNPK
Sbjct: 53 VQGIVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 112
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LAARKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAY+H
Sbjct: 113 KMVVTGAKSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAYNH 172
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF NIYPVL+EFRK
Sbjct: 173 GHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNNIYPVLSEFRK 232
>gi|51948368|ref|NP_001004198.1| TATA-box-binding protein [Rattus norvegicus]
gi|51858685|gb|AAH81939.1| TATA box binding protein [Rattus norvegicus]
gi|149047096|gb|EDL99816.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
gi|149047097|gb|EDL99817.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
Length = 318
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 139 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 198
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 199 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 258
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 259 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 317
>gi|2052377|gb|AAB53097.1| transcription factor IID [Mus musculus domesticus]
Length = 318
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 139 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 198
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 199 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 258
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 259 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 317
>gi|172073171|ref|NP_038712.3| TATA-box-binding protein [Mus musculus]
gi|135638|sp|P29037.1|TBP_MOUSE RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|220612|dbj|BAA00840.1| TFIID [Mus musculus]
gi|15215158|gb|AAH12685.1| Tbp protein [Mus musculus]
gi|39754750|gb|AAR30866.1| TATA-binding protein [Mus musculus]
gi|148688512|gb|EDL20459.1| TATA box binding protein, isoform CRA_a [Mus musculus]
gi|148688514|gb|EDL20461.1| TATA box binding protein, isoform CRA_a [Mus musculus]
Length = 316
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|348561403|ref|XP_003466502.1| PREDICTED: TATA-box-binding protein-like [Cavia porcellus]
Length = 321
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 142 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 201
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 202 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 261
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 262 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 320
>gi|41056135|ref|NP_956390.1| TATA-box-binding protein [Danio rerio]
gi|82187626|sp|Q7SXL3.1|TBP_DANRE RecName: Full=TATA-box-binding protein; Short=zTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
Short=zfTBF; AltName: Full=Transcription initiation
factor TFIID TBP subunit
gi|33416871|gb|AAH55549.1| TATA box binding protein [Danio rerio]
gi|37727187|gb|AAO34524.1| TATA-binding protein [Danio rerio]
gi|41351472|gb|AAH65860.1| TATA box binding protein [Danio rerio]
Length = 302
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 301
>gi|426235063|ref|XP_004011510.1| PREDICTED: TATA-box-binding protein isoform 3 [Ovis aries]
Length = 288
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 109 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 168
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 169 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 228
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 229 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 287
>gi|402868789|ref|XP_003898470.1| PREDICTED: TATA-box-binding protein isoform 2 [Papio anubis]
Length = 325
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 146 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 205
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 206 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 265
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 266 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 324
>gi|126310795|ref|XP_001371815.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Monodelphis
domestica]
Length = 308
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 189 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 249 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 307
>gi|355723497|gb|AES07910.1| TATA-box binding protein [Mustela putorius furo]
Length = 315
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|291241110|ref|XP_002740460.1| PREDICTED: TATA box binding protein-like [Saccoglossus kowalevskii]
Length = 293
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 114 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 173
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYAR+IQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 174 VCTGAKSEDFSRLAARKYARVIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 233
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F+K+
Sbjct: 234 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFENIYPILKAFKKM 292
>gi|148688513|gb|EDL20460.1| TATA box binding protein, isoform CRA_b [Mus musculus]
Length = 323
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 144 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 203
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 204 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 263
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 264 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 322
>gi|80474966|gb|AAI09055.1| TBP protein [Homo sapiens]
gi|190691993|gb|ACE87771.1| TATA box binding protein protein [synthetic construct]
gi|254071353|gb|ACT64436.1| TATA box binding protein protein [synthetic construct]
Length = 288
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 109 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 168
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 169 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 228
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 229 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 287
>gi|395839043|ref|XP_003792412.1| PREDICTED: TATA-box-binding protein [Otolemur garnettii]
Length = 326
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 147 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 206
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 207 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 266
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 267 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 325
>gi|355562211|gb|EHH18843.1| hypothetical protein EGK_15529 [Macaca mulatta]
Length = 326
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 147 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 206
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 207 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 266
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 267 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 325
>gi|344306713|ref|XP_003422029.1| PREDICTED: TATA-box-binding protein-like [Loxodonta africana]
Length = 324
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 145 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 204
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 205 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 264
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 265 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 323
>gi|432114953|gb|ELK36596.1| TATA-box-binding protein [Myotis davidii]
Length = 316
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|392573053|gb|EIW66195.1| hypothetical protein TREMEDRAFT_41045 [Tremella mesenterica DSM
1558]
Length = 255
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/182 (69%), Positives = 141/182 (77%), Gaps = 24/182 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+C+LDLK IAL ARNAEYNPK
Sbjct: 71 VQGLVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASG 130
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSH
Sbjct: 131 KMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSH 190
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
GAFSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF IY VLTEFRK
Sbjct: 191 GAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFNQIYAVLTEFRK 250
Query: 165 VQ 166
Q
Sbjct: 251 DQ 252
>gi|29477183|gb|AAH50136.1| Tbp protein [Mus musculus]
Length = 316
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 137 GIVPRLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|224047784|ref|XP_002190631.1| PREDICTED: TATA-box-binding protein [Taeniopygia guttata]
Length = 302
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 301
>gi|402868787|ref|XP_003898469.1| PREDICTED: TATA-box-binding protein isoform 1 [Papio anubis]
Length = 335
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 156 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 215
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 216 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 275
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 276 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 334
>gi|54696180|gb|AAV38462.1| TATA box binding protein [synthetic construct]
Length = 337
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 157 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 216
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 217 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 276
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 277 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 335
>gi|1582692|prf||2119243A TATA box-binding protein
Length = 338
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 159 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 218
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 219 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 278
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 279 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 337
>gi|301779702|ref|XP_002925261.1| PREDICTED: TATA-box-binding protein-like [Ailuropoda melanoleuca]
Length = 324
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 145 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 204
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 205 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 264
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 265 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 323
>gi|297679683|ref|XP_002817654.1| PREDICTED: TATA-box-binding protein [Pongo abelii]
Length = 327
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 148 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 207
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 208 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 267
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 268 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 326
>gi|73973822|ref|XP_854525.1| PREDICTED: TATA-box-binding protein isoform 1 [Canis lupus
familiaris]
Length = 324
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 145 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 204
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 205 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 264
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 265 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 323
>gi|426355239|ref|XP_004045036.1| PREDICTED: TATA-box-binding protein isoform 2 [Gorilla gorilla
gorilla]
Length = 311
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 132 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 191
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 192 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 251
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 252 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 310
>gi|397502106|ref|XP_003821709.1| PREDICTED: TATA-box-binding protein isoform 2 [Pan paniscus]
Length = 312
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 133 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 192
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 193 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 252
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 253 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 311
>gi|348534076|ref|XP_003454529.1| PREDICTED: TATA-box-binding protein-like [Oreochromis niloticus]
Length = 333
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 154 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 213
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 214 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 273
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 274 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 332
>gi|285026520|ref|NP_001165556.1| TATA-box-binding protein isoform 2 [Homo sapiens]
Length = 319
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 140 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 199
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 200 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 259
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 260 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 318
>gi|45384144|ref|NP_990434.1| TATA-box-binding protein [Gallus gallus]
gi|3122919|sp|O13270.1|TBP_CHICK RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|2145309|dbj|BAA20296.1| TBP0 [Gallus gallus]
gi|2145310|dbj|BAA20297.1| TBP1 [Gallus gallus]
gi|2145320|dbj|BAA20298.1| TBP [Gallus gallus]
Length = 302
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 301
>gi|326915583|ref|XP_003204094.1| PREDICTED: TATA-box-binding protein-like [Meleagris gallopavo]
Length = 303
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 124 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 183
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 184 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 243
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 244 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 302
>gi|38680348|gb|AAR26545.1| TATA-binding protein [Gallus gallus]
Length = 302
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 301
>gi|426355237|ref|XP_004045035.1| PREDICTED: TATA-box-binding protein isoform 1 [Gorilla gorilla
gorilla]
Length = 331
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 152 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 211
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 212 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 271
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 272 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 330
>gi|80478871|gb|AAI09054.1| TATA box binding protein [Homo sapiens]
gi|82571689|gb|AAI10342.1| TATA box binding protein [Homo sapiens]
gi|119567803|gb|EAW47418.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|119567804|gb|EAW47419.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|190689691|gb|ACE86620.1| TATA box binding protein protein [synthetic construct]
gi|190691053|gb|ACE87301.1| TATA box binding protein protein [synthetic construct]
Length = 338
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 159 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 218
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 219 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 278
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 279 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 337
>gi|37066|emb|CAA38736.1| TFIID [Homo sapiens]
gi|227072|prf||1613451A TATA binding factor TFIID
Length = 335
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 156 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 215
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 216 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 275
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 276 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 334
>gi|4507379|ref|NP_003185.1| TATA-box-binding protein isoform 1 [Homo sapiens]
gi|1351223|sp|P20226.2|TBP_HUMAN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|339492|gb|AAA36731.1| TATA-box binding protein [Homo sapiens]
gi|48145669|emb|CAG33057.1| TBP [Homo sapiens]
Length = 339
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 160 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 219
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 220 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 279
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 280 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 338
>gi|397502104|ref|XP_003821708.1| PREDICTED: TATA-box-binding protein isoform 1 [Pan paniscus]
Length = 332
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 153 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 212
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 213 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 272
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 273 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 331
>gi|332264009|ref|XP_003281041.1| PREDICTED: TATA-box-binding protein [Nomascus leucogenys]
Length = 328
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 149 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 208
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 209 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 268
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 269 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 327
>gi|296199650|ref|XP_002747248.1| PREDICTED: TATA-box-binding protein [Callithrix jacchus]
Length = 333
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 154 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 213
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 214 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 273
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 274 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 332
>gi|281351746|gb|EFB27330.1| hypothetical protein PANDA_014728 [Ailuropoda melanoleuca]
Length = 308
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 189 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 249 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 307
>gi|194390034|dbj|BAG60533.1| unnamed protein product [Homo sapiens]
Length = 316
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|149743967|ref|XP_001499379.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Equus caballus]
Length = 329
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 150 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 209
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 210 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 269
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 270 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 328
>gi|291414592|ref|XP_002723543.1| PREDICTED: TATA box binding protein [Oryctolagus cuniculus]
Length = 323
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 144 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 203
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 204 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 263
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 264 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 322
>gi|432852539|ref|XP_004067298.1| PREDICTED: TATA-box-binding protein [Oryzias latipes]
Length = 305
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 126 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 185
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 186 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 245
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 246 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 304
>gi|115496234|ref|NP_001069210.1| TATA-box-binding protein [Bos taurus]
gi|119367391|sp|Q2HJ52.1|TBP_BOVIN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|87578225|gb|AAI13309.1| TATA box binding protein [Bos taurus]
Length = 319
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 140 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 199
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 200 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 259
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 260 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 318
>gi|426235061|ref|XP_004011509.1| PREDICTED: TATA-box-binding protein isoform 2 [Ovis aries]
Length = 306
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 127 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 186
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 187 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 246
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 247 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 305
>gi|426235059|ref|XP_004011508.1| PREDICTED: TATA-box-binding protein isoform 1 [Ovis aries]
Length = 314
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 135 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 194
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 195 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 254
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 255 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 313
>gi|440894479|gb|ELR46921.1| TATA-box-binding protein [Bos grunniens mutus]
Length = 312
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 133 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 192
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 193 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 252
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 253 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 311
>gi|147906485|ref|NP_001089038.1| TATA box binding protein [Xenopus laevis]
gi|57032530|gb|AAH88819.1| LOC503680 protein [Xenopus laevis]
Length = 296
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 117 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 176
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 177 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 236
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 237 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 295
>gi|109073359|ref|XP_001085368.1| PREDICTED: TATA-box-binding protein isoform 3 [Macaca mulatta]
gi|75075688|sp|Q4R4F5.1|TBP_MACFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|67968013|dbj|BAE00488.1| unnamed protein product [Macaca fascicularis]
gi|67971336|dbj|BAE02010.1| unnamed protein product [Macaca fascicularis]
gi|355749048|gb|EHH53531.1| hypothetical protein EGM_14191 [Macaca fascicularis]
Length = 326
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 147 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 206
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 207 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 266
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 267 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 325
>gi|403305888|ref|XP_003943481.1| PREDICTED: TATA-box-binding protein [Saimiri boliviensis
boliviensis]
Length = 326
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 147 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 206
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 207 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 266
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 267 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 325
>gi|255719850|ref|XP_002556205.1| KLTH0H07502p [Lachancea thermotolerans]
gi|238942171|emb|CAR30343.1| KLTH0H07502p [Lachancea thermotolerans CBS 6340]
Length = 230
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK +AL ARNAEYNPK
Sbjct: 52 GIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 111
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V GAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 112 VVIGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 171
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 172 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKL 230
>gi|17298076|dbj|BAB78512.1| TATA-box binding protein [Oryzias latipes]
Length = 320
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 141 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 201 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 261 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 319
>gi|392596142|gb|EIW85465.1| TBP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 295
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 117 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 176
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 177 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 236
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 237 FSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 294
>gi|366987133|ref|XP_003673333.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
gi|342299196|emb|CCC66945.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
Length = 252
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 74 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 133
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 134 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 193
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 194 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 252
>gi|409082748|gb|EKM83106.1| hypothetical protein AGABI1DRAFT_111611 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 306
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 128 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 187
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 188 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 247
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 248 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 305
>gi|346470907|gb|AEO35298.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 131 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 190
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARIIQKLGF AKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 191 VCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQ 250
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 251 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRK 308
>gi|427788157|gb|JAA59530.1| Putative tata-box-binding protein [Rhipicephalus pulchellus]
Length = 308
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 130 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 189
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARIIQKLGF AKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 190 VCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQ 249
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 250 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRK 307
>gi|384245994|gb|EIE19486.1| TBP-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 139/178 (78%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDCKLDLK IA +ARNAEYNPK
Sbjct: 25 GIVPTLQNIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFASGKM 84
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ ++ AARKYA+IIQKL FPA FKDFKIQNIVGSCDVKFPIRLEGL YSHG
Sbjct: 85 VCTGAKSEEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNYSHGM 144
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRMK+PK+VLLIFVSGK+V+TG K R++ Y AFE+IYPVL EFRK
Sbjct: 145 FSSYEPELFPGLIYRMKEPKVVLLIFVSGKVVLTGGKKREDIYEAFESIYPVLQEFRK 202
>gi|354486300|ref|XP_003505319.1| PREDICTED: TATA-box-binding protein-like [Cricetulus griseus]
gi|344249386|gb|EGW05490.1| TATA-box-binding protein [Cricetulus griseus]
Length = 315
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 136 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 195
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 196 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 255
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 256 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 314
>gi|169854094|ref|XP_001833724.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
gi|116505191|gb|EAU88086.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
Length = 308
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 130 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 189
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 190 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 249
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 250 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 307
>gi|37726728|gb|AAO34515.1| TATA-binding protein [Petromyzon marinus]
Length = 292
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 113 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 172
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 173 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 232
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 233 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 291
>gi|225556591|gb|EEH04879.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
G186AR]
gi|240273705|gb|EER37225.1| TATA-binding protein [Ajellomyces capsulatus H143]
gi|325087599|gb|EGC40909.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
H88]
Length = 262
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 82 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 141
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 142 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 201
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 202 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 261
Query: 165 V 165
V
Sbjct: 262 V 262
>gi|389749066|gb|EIM90243.1| TBP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 301
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 123 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 183 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLVEFRK 300
>gi|225681638|gb|EEH19922.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb03]
gi|226288778|gb|EEH44290.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 265
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 85 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 144
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 145 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 204
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 205 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 264
Query: 165 V 165
V
Sbjct: 265 V 265
>gi|410076168|ref|XP_003955666.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
gi|372462249|emb|CCF56531.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
Length = 230
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 52 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 111
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 112 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 171
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 172 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 230
>gi|449667471|ref|XP_002160884.2| PREDICTED: TATA-box-binding protein-like isoform 1 [Hydra
magnipapillata]
Length = 255
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 77 GIIPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR+IQKLGFPAKF DFKIQNIVGSCDVKFPIRLEGL +H
Sbjct: 137 VCTGAKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQ 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFE+IYP+L FRK
Sbjct: 197 FCSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILRGFRKT 255
>gi|295670940|ref|XP_002796017.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284150|gb|EEH39716.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 265
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 85 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 144
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 145 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 204
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 205 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 264
Query: 165 V 165
V
Sbjct: 265 V 265
>gi|315055559|ref|XP_003177154.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
gi|311339000|gb|EFQ98202.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
Length = 257
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 196
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 197 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 256
Query: 165 V 165
V
Sbjct: 257 V 257
>gi|156846828|ref|XP_001646300.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156116975|gb|EDO18442.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 251
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 73 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 132
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 133 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 192
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 193 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 251
>gi|296824240|ref|XP_002850621.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
gi|238838175|gb|EEQ27837.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
Length = 266
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 86 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 145
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 146 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 205
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 206 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 265
Query: 165 V 165
V
Sbjct: 266 V 266
>gi|62858635|ref|NP_001016339.1| TATA-box-binding protein [Xenopus (Silurana) tropicalis]
gi|123907365|sp|Q28GG8.1|TBP_XENTR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|89266978|emb|CAJ83650.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|169642632|gb|AAI60510.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213624491|gb|AAI71176.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213627356|gb|AAI71174.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
Length = 297
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 118 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 177
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 178 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 237
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 238 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 296
>gi|153792245|ref|NP_001093264.1| TATA box binding protein [Takifugu rubripes]
gi|148910855|tpg|DAA06038.1| TPA_inf: TATA box binding protein [Takifugu rubripes]
Length = 301
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 122 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 181
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 182 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 241
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 242 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 300
>gi|147900802|ref|NP_001084369.1| TATA-box-binding protein [Xenopus laevis]
gi|135642|sp|P27633.1|TBP_XENLA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|65149|emb|CAA46832.1| transcription factor [Xenopus laevis]
gi|76779674|gb|AAI06645.1| TFIIDtau protein [Xenopus laevis]
Length = 297
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 118 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 177
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 178 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 237
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 238 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 296
>gi|326471025|gb|EGD95034.1| TATA-box-binding protein [Trichophyton tonsurans CBS 112818]
Length = 257
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 196
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 197 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 256
Query: 165 V 165
V
Sbjct: 257 V 257
>gi|303317340|ref|XP_003068672.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108353|gb|EER26527.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038620|gb|EFW20555.1| TATA-box binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 72 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 131
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 132 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 191
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 192 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 251
Query: 165 V 165
V
Sbjct: 252 V 252
>gi|345309405|ref|XP_003428833.1| PREDICTED: LOW QUALITY PROTEIN: TATA-box-binding protein-like
[Ornithorhynchus anatinus]
Length = 308
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 189 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 249 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFQNIYPILKGFRKT 307
>gi|91081661|ref|XP_969326.1| PREDICTED: similar to DNA-binding protein [Tribolium castaneum]
gi|270006234|gb|EFA02682.1| hypothetical protein TcasGA2_TC008403 [Tribolium castaneum]
Length = 311
Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 136/176 (77%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK VC
Sbjct: 135 VPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 194
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H +FS
Sbjct: 195 TGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFS 254
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK+R E Y AF+NIYP+L F+K
Sbjct: 255 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRQEIYEAFDNIYPILKSFKK 310
>gi|17298078|dbj|BAB78513.1| TATA-box binding protein [Lethenteron reissneri]
Length = 301
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 122 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 181
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 182 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 241
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 242 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 300
>gi|157265561|ref|NP_001098076.1| TATA box-binding protein-like protein 2 [Pan troglodytes]
gi|166987366|sp|A6H907.1|TBPL2_PANTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910843|tpg|DAA06032.1| TPA_inf: TATA box binding protein-like 2 [Pan troglodytes]
Length = 376
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 317 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 375
>gi|444316966|ref|XP_004179140.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
gi|387512180|emb|CCH59621.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 64 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 123
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 124 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 183
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 184 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 242
>gi|336367903|gb|EGN96247.1| hypothetical protein SERLA73DRAFT_76226 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380633|gb|EGO21786.1| hypothetical protein SERLADRAFT_410307 [Serpula lacrymans var.
lacrymans S7.9]
Length = 306
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 128 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 187
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 188 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 247
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 248 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 305
>gi|194388082|dbj|BAG65425.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 139 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 198
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 199 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 258
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 259 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 317
>gi|403418333|emb|CCM05033.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 139 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 198
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 199 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 258
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 259 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 316
>gi|50290217|ref|XP_447540.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526850|emb|CAG60477.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 55 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 114
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 115 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 174
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 175 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 233
>gi|26351419|dbj|BAC39346.1| unnamed protein product [Mus musculus]
Length = 316
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ RNAEYNPK
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRPRNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 196
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 197 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 256
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 257 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 315
>gi|254586113|ref|XP_002498624.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
gi|238941518|emb|CAR29691.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
Length = 239
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 61 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 239
>gi|302693080|ref|XP_003036219.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
gi|300109915|gb|EFJ01317.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
Length = 286
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 108 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 167
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAYSHG
Sbjct: 168 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGQ 227
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 228 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 285
>gi|37726742|gb|AAO34521.1| TATA-binding protein [Eptatretus stoutii]
Length = 324
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 145 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 204
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 205 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 264
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 265 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILKGFRKT 323
>gi|269980507|gb|ACZ56425.1| TATA-binding protein [Litopenaeus vannamei]
Length = 300
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKL+LKKIAL ARNAEYNPK
Sbjct: 122 GIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 181
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQ S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 182 VCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 241
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR++ Y AF+NIYP+L F+K
Sbjct: 242 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRNQIYEAFDNIYPILKSFKK 299
>gi|392870835|gb|EAS32669.2| TATA-box-binding protein [Coccidioides immitis RS]
Length = 299
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 119 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 178
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 179 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 238
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRK
Sbjct: 239 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 298
Query: 165 V 165
V
Sbjct: 299 V 299
>gi|365987133|ref|XP_003670398.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
gi|343769168|emb|CCD25155.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Length = 264
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 86 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 145
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 146 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 205
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 206 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 264
>gi|357612491|gb|EHJ68026.1| TATA-box-binding protein [Danaus plexippus]
Length = 306
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL+CKLDLKKIAL ARNAEYNPK
Sbjct: 128 GILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 187
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 188 VCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 247
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 248 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 305
>gi|392567667|gb|EIW60842.1| TBP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 308
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 130 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 189
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 190 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 249
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 250 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 307
>gi|409046465|gb|EKM55945.1| hypothetical protein PHACADRAFT_256913 [Phanerochaete carnosa
HHB-10118-sp]
Length = 321
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 143 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 202
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 203 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 262
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 263 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 320
>gi|157265563|ref|NP_001098077.1| TATA-box-binding protein [Pan troglodytes]
gi|148910853|tpg|DAA06037.1| TPA_inf: TATA box binding protein [Pan troglodytes]
Length = 336
Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNP
Sbjct: 157 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPTRFAAVIMRIREPRTTALIFSSGKM 216
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 217 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 276
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 277 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 335
>gi|62528966|gb|AAX84779.1| TATA-binding protein [Hydractinia echinata]
Length = 227
Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIA ARNAEYNPK
Sbjct: 49 GIVPQLQNIVSTVNLSCKLDLKKIASHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 108
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR+IQKLGFPAKF DFKIQNIVGSCDVKFPIRLEGL +H
Sbjct: 109 VCTGAKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQ 168
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SYEPELFPGLIYRM +PKIVLLIFVSGK+V+TGAKVR E Y AFE+IYP+L FRK
Sbjct: 169 FCSYEPELFPGLIYRMVKPKIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILRGFRKT 227
>gi|37726732|gb|AAO34517.1| TATA-binding protein isoform 2 [Branchiostoma floridae]
Length = 329
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 150 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKM 209
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFP KF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 210 VCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQ 269
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR+E Y AFE IYP+L FRK
Sbjct: 270 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILKGFRKT 328
>gi|15826400|pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 6 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 65
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 66 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 125
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 126 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 183
>gi|170093960|ref|XP_001878201.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646655|gb|EDR10900.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 189
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 11 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 188
>gi|426200613|gb|EKV50537.1| hypothetical protein AGABI2DRAFT_44722, partial [Agaricus bisporus
var. bisporus H97]
Length = 189
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 11 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 70
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 188
>gi|226088558|dbj|BAH37024.1| TATA-box binding protein [Oryzias latipes]
Length = 305
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 126 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 185
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF D KIQN+VGSCDVKFPIRLEGL +H
Sbjct: 186 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSCDVKFPIRLEGLVLTHQQ 245
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 246 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 304
>gi|403216725|emb|CCK71221.1| hypothetical protein KNAG_0G01630 [Kazachstania naganishii CBS
8797]
Length = 255
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNP+
Sbjct: 77 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 197 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 255
>gi|37726730|gb|AAO34516.1| TATA-binding protein isoform 1 [Branchiostoma floridae]
gi|37726734|gb|AAO34519.1| TATA-binding protein isoform 3 [Branchiostoma floridae]
Length = 331
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 152 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKM 211
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFP KF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 212 VCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQ 271
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR+E Y AFE IYP+L FRK
Sbjct: 272 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILKGFRKT 330
>gi|425767263|gb|EKV05837.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum PHI26]
gi|425780061|gb|EKV18083.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum Pd1]
Length = 263
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 85 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 144
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 145 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 204
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 205 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 263
>gi|296414351|ref|XP_002836865.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632706|emb|CAZ81056.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 73 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE+IYPVL +FRK
Sbjct: 193 HHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYIAFESIYPVLNDFRK 252
Query: 165 V 165
V
Sbjct: 253 V 253
>gi|241566250|ref|XP_002402125.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
gi|215499985|gb|EEC09479.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
Length = 286
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 108 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 167
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARIIQKLGF AKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 168 VCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQ 227
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 228 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRAEIYEAFDNIYPILKGFRK 285
>gi|38492542|pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 62 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 179
>gi|225719098|gb|ACO15395.1| TATA-box-binding protein [Caligus clemensi]
Length = 323
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTV+L CKLDLKKIAL ARNAEYNPK
Sbjct: 145 GIVPQLQNIVSTVSLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 204
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARI+QKLGFPA+FKDFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 205 VCTGAKSEEDSRLAARKYARIVQKLGFPARFKDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 264
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 265 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKNFKK 322
>gi|255936921|ref|XP_002559487.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584107|emb|CAP92136.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 87 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 146
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 147 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 206
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 207 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 265
>gi|367010504|ref|XP_003679753.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
gi|359747411|emb|CCE90542.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
Length = 235
Score = 248 bits (633), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAEYNPK
Sbjct: 57 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 116
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 117 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 176
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLL+FVSGK+V+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 177 FSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKQREEIYQAFEAIYPVLSEFRKM 235
>gi|54696182|gb|AAV38463.1| TATA box binding protein [Homo sapiens]
Length = 336
Score = 248 bits (632), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 157 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 216
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEG +H
Sbjct: 217 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGPVLTHQQ 276
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 277 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 335
>gi|1827869|pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 248 bits (632), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 6 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 65
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 66 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 125
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 126 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 183
>gi|317036144|ref|XP_001397705.2| TATA-box-binding protein [Aspergillus niger CBS 513.88]
Length = 262
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 84 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 143
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 144 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 203
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 204 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 262
>gi|312382984|gb|EFR28233.1| hypothetical protein AND_04068 [Anopheles darlingi]
Length = 327
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 121/173 (69%), Positives = 135/173 (78%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL CKLDLKKIAL ARNAEYNPK VCTGA
Sbjct: 154 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ S+LAARKYARIIQKLGF AKF DFK+QN+VGSCDV+FPIRLEGL +HG FSSYE
Sbjct: 214 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYE 273
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F+K
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKSFKK 326
>gi|2897847|gb|AAC03409.1| transcription factor IID [Homo sapiens]
Length = 339
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ RNAEYNPK
Sbjct: 160 GIVPQLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 219
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 220 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 279
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 280 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 338
>gi|414872051|tpg|DAA50608.1| TPA: hypothetical protein ZEAMMB73_869091, partial [Zea mays]
Length = 195
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 127/158 (80%), Positives = 131/158 (82%), Gaps = 24/158 (15%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 80 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKV
Sbjct: 140 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV 177
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QNIV + ++ + L+ +A + Y P+ F +I R+++PK LIF SGK+V TG
Sbjct: 25 LQNIVSTVNLDCKLDLKAIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 83
Query: 142 AKVRDETYTA 151
AK ++ A
Sbjct: 84 AKSEQQSKLA 93
>gi|358368366|dbj|GAA84983.1| TATA-box binding protein [Aspergillus kawachii IFO 4308]
Length = 262
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 84 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 143
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 144 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 203
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 204 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 262
>gi|366997981|ref|XP_003683727.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
gi|357522022|emb|CCE61293.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
Length = 244
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 139/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK +AL ARNAE+NPK
Sbjct: 66 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGKM 125
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 126 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 185
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLL+FVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 186 FSSYEPELFPGLIYRMVKPKIVLLVFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 244
>gi|6980708|pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980712|pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980714|pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 3 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 62
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 63 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 122
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 123 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 180
>gi|390598615|gb|EIN08013.1| TATA-box binding protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 189
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/178 (70%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 11 GIVPQLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 70
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LAARKYARIIQKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 71 VVTGAKSEDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF IY VL EFRK
Sbjct: 131 FSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRK 188
>gi|494632|pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
gi|494633|pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 139/180 (77%), Gaps = 24/180 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
+G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 1 MGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 60
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 61 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 120
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 121 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 180
>gi|3122921|sp|O17488.1|TBP_ARTSF RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2623958|emb|CAA05488.1| TATA-binding protein [Artemia franciscana]
Length = 275
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C+LDLKKIALQARNAEYNPK
Sbjct: 98 GIIPVLENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 157
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 158 VCTGAKSEEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 217
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F+K
Sbjct: 218 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKGFKK 275
>gi|169770491|ref|XP_001819715.1| TATA-box-binding protein [Aspergillus oryzae RIB40]
gi|238487092|ref|XP_002374784.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|83767574|dbj|BAE57713.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699663|gb|EED56002.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|391867294|gb|EIT76540.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aspergillus oryzae 3.042]
Length = 263
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 85 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 144
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 145 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 204
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 205 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 263
>gi|345560531|gb|EGX43656.1| hypothetical protein AOL_s00215g392 [Arthrobotrys oligospora ATCC
24927]
Length = 257
Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 139/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 196
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 197 HHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLSDFRK 256
Query: 165 V 165
V
Sbjct: 257 V 257
>gi|3122925|sp|Q12731.1|TBP_EMENI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|887878|gb|AAB57874.1| TATA-box binding protein [Emericella nidulans]
gi|887880|gb|AAB57876.1| TATA-box binding protein [Emericella nidulans]
Length = 268
Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 90 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 149
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 150 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 209
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 210 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 268
>gi|115396162|ref|XP_001213720.1| TATA-box binding protein [Aspergillus terreus NIH2624]
gi|114193289|gb|EAU34989.1| TATA-box binding protein [Aspergillus terreus NIH2624]
Length = 263
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 85 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 144
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 145 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 204
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 205 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 263
>gi|348168341|gb|AEP68421.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168347|gb|AEP68424.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|119491905|ref|XP_001263447.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
gi|119411607|gb|EAW21550.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
Length = 264
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 86 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 145
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 146 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 205
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRKV
Sbjct: 206 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKV 264
>gi|242022166|ref|XP_002431512.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212516806|gb|EEB18774.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 298
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIA+ ARNAEYNPK
Sbjct: 120 GIVPQLQNIVSTVNLGCKLDLKKIAIHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 179
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 180 VCTGAKSEDDSRLAARKYARIIQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 239
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 240 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 297
>gi|449296869|gb|EMC92888.1| hypothetical protein BAUCODRAFT_76816 [Baudoinia compniacensis UAMH
10762]
Length = 240
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 60 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 119
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 120 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 179
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 180 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 239
Query: 165 V 165
Sbjct: 240 T 240
>gi|388580273|gb|EIM20589.1| TBP-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 238
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 60 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 119
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAY+HG
Sbjct: 120 VVTGAKSEDDSKLASRKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYTHGH 179
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF NIY L ++RK
Sbjct: 180 FSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYTAFNNIYATLLDYRK 237
>gi|320588959|gb|EFX01427.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 268
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/173 (72%), Positives = 134/173 (77%), Gaps = 24/173 (13%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+NIV+TVNLDC+LDLK IAL ARNAEYNPK V TGAK
Sbjct: 96 ENIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 155
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H FSSYEP
Sbjct: 156 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 215
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
ELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E YTAFE IYPVL +FRKV
Sbjct: 216 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYTAFEMIYPVLQDFRKV 268
>gi|255078440|ref|XP_002502800.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
gi|226518066|gb|ACO64058.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
Length = 240
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV+TVNLDCKLDLK IA ARN EYNPK
Sbjct: 36 GIVPQLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKM 95
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAK+E ++ AARKYA++I KLGFPA+FKDFKIQN+VGSCDVKFPIRLEGLA+SHG
Sbjct: 96 VCTGAKTEALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGH 155
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F+ YEPELFPGLIYRM+ PKIVLLIFVSGKIV+TG K RD+ Y AFENIYPVLTEFRK+
Sbjct: 156 FAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKNRDDIYKAFENIYPVLTEFRKL 214
>gi|323305296|gb|EGA59043.1| Spt15p [Saccharomyces cerevisiae FostersB]
Length = 240
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|453083461|gb|EMF11507.1| transcription initiation factor TFIID, TATA binding protein
[Mycosphaerella populorum SO2202]
Length = 258
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 78 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 137
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 138 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 197
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 198 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 257
Query: 165 V 165
Sbjct: 258 T 258
>gi|398364911|ref|NP_011075.3| Spt15p [Saccharomyces cerevisiae S288c]
gi|135643|sp|P13393.3|TBP_YEAST RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription factor D; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|73535263|pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|4610|emb|CAA34751.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171132|gb|AAA34458.1| TATA box factor [Saccharomyces cerevisiae]
gi|172901|gb|AAA35147.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|603388|gb|AAB64675.1| Spt15p: TATA-box binding protein tfIId [Saccharomyces cerevisiae]
gi|151944866|gb|EDN63125.1| TBP [Saccharomyces cerevisiae YJM789]
gi|190405707|gb|EDV08974.1| TATA-box binding protein [Saccharomyces cerevisiae RM11-1a]
gi|256272072|gb|EEU07084.1| Spt15p [Saccharomyces cerevisiae JAY291]
gi|259146076|emb|CAY79336.1| Spt15p [Saccharomyces cerevisiae EC1118]
gi|285811781|tpg|DAA07809.1| TPA: Spt15p [Saccharomyces cerevisiae S288c]
gi|323309314|gb|EGA62532.1| Spt15p [Saccharomyces cerevisiae FostersO]
gi|323333807|gb|EGA75198.1| Spt15p [Saccharomyces cerevisiae AWRI796]
gi|323337848|gb|EGA79088.1| Spt15p [Saccharomyces cerevisiae Vin13]
gi|323348846|gb|EGA83084.1| Spt15p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355333|gb|EGA87158.1| Spt15p [Saccharomyces cerevisiae VL3]
gi|348168207|gb|AEP68354.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168209|gb|AEP68355.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168211|gb|AEP68356.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168213|gb|AEP68357.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168215|gb|AEP68358.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168217|gb|AEP68359.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168219|gb|AEP68360.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168221|gb|AEP68361.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168223|gb|AEP68362.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168225|gb|AEP68363.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168227|gb|AEP68364.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168229|gb|AEP68365.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168235|gb|AEP68368.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168237|gb|AEP68369.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168239|gb|AEP68370.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168241|gb|AEP68371.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168243|gb|AEP68372.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168245|gb|AEP68373.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168247|gb|AEP68374.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168249|gb|AEP68375.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168251|gb|AEP68376.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168253|gb|AEP68377.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168255|gb|AEP68378.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168257|gb|AEP68379.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168259|gb|AEP68380.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168261|gb|AEP68381.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168263|gb|AEP68382.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168265|gb|AEP68383.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168267|gb|AEP68384.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168269|gb|AEP68385.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168271|gb|AEP68386.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168273|gb|AEP68387.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168275|gb|AEP68388.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168277|gb|AEP68389.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168279|gb|AEP68390.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168281|gb|AEP68391.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168283|gb|AEP68392.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168285|gb|AEP68393.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168287|gb|AEP68394.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168289|gb|AEP68395.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168291|gb|AEP68396.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168293|gb|AEP68397.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168295|gb|AEP68398.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168297|gb|AEP68399.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168299|gb|AEP68400.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168301|gb|AEP68401.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168303|gb|AEP68402.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168305|gb|AEP68403.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168307|gb|AEP68404.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168309|gb|AEP68405.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168311|gb|AEP68406.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168313|gb|AEP68407.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168315|gb|AEP68408.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168317|gb|AEP68409.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168319|gb|AEP68410.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168321|gb|AEP68411.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168323|gb|AEP68412.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168325|gb|AEP68413.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168327|gb|AEP68414.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168329|gb|AEP68415.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168331|gb|AEP68416.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168333|gb|AEP68417.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168335|gb|AEP68418.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168337|gb|AEP68419.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168339|gb|AEP68420.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168343|gb|AEP68422.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168345|gb|AEP68423.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168349|gb|AEP68425.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168351|gb|AEP68426.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168353|gb|AEP68427.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168355|gb|AEP68428.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168357|gb|AEP68429.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168361|gb|AEP68431.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168363|gb|AEP68432.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168365|gb|AEP68433.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168367|gb|AEP68434.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168369|gb|AEP68435.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168371|gb|AEP68436.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|349577810|dbj|GAA22978.1| K7_Spt15p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765929|gb|EHN07432.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299852|gb|EIW10944.1| Spt15p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|226502|prf||1515352A transcription initiation factor TFIID
Length = 240
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|158287840|ref|XP_309748.2| AGAP010958-PA [Anopheles gambiae str. PEST]
gi|157019382|gb|EAA45305.2| AGAP010958-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/173 (69%), Positives = 134/173 (77%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL CKLDLKKIAL ARNAEYNPK VCTGA
Sbjct: 150 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE S+LAARKYARIIQKLGF AKF DFK+QN+VGSCDV+FPIRLEGL +HG FSSYE
Sbjct: 210 KSEDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYE 269
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F+K
Sbjct: 270 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKSFKK 322
>gi|172899|gb|AAA35146.1| tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|348168231|gb|AEP68366.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168233|gb|AEP68367.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|321473578|gb|EFX84545.1| hypothetical protein DAPPUDRAFT_194512 [Daphnia pulex]
Length = 312
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 134 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 193
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARI+QKL FPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 194 VCTGAKSEEDSRLAARKYARIVQKLNFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 253
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 254 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKK 311
>gi|348168359|gb|AEP68430.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|164429967|gb|ABY55311.1| TATA-binding protein 1 [Gallus gallus]
Length = 302
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEY+PK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR+++KLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVRKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 301
>gi|335309027|ref|XP_003361466.1| PREDICTED: TATA-box-binding protein [Sus scrofa]
Length = 326
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/185 (68%), Positives = 139/185 (75%), Gaps = 30/185 (16%)
Query: 5 ICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------ 46
IC I+G NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 147 ICNRIVG------NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALI 200
Query: 47 ------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGL 100
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL
Sbjct: 201 FSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 260
Query: 101 AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
+H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L
Sbjct: 261 VLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
Query: 161 EFRKV 165
FRK
Sbjct: 321 GFRKT 325
>gi|33323635|gb|AAQ07596.1|AF503449_1 TATA-binding protein [Danio rerio]
Length = 302
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VGTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKT 301
>gi|196007384|ref|XP_002113558.1| TATA-binding protein [Trichoplax adhaerens]
gi|190583962|gb|EDV24032.1| TATA-binding protein [Trichoplax adhaerens]
Length = 203
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/174 (68%), Positives = 138/174 (79%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL C+L+L++IAL ARNAEYNPK VCTGA
Sbjct: 30 LQNIVSTVNLGCRLELQRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 89
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+QS+LAARKYAR+IQKLGFPAKF +F+IQN+VGSCDVKFPIRLEGL +HG FSSYE
Sbjct: 90 KSEEQSRLAARKYARVIQKLGFPAKFTEFRIQNMVGSCDVKFPIRLEGLVLAHGQFSSYE 149
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVRDE Y AF+NIYP+L FRK
Sbjct: 150 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRDEIYEAFDNIYPILKGFRKT 203
>gi|147902539|ref|NP_001080921.1| TATA box-binding protein-like protein 2 [Xenopus laevis]
gi|75570954|sp|Q5UE94.1|TBPL2_XENLA RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|54402365|gb|AAV34742.1| TATA-binding protein 2 [Xenopus laevis]
Length = 320
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 141 GIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 201 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 261 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKT 319
>gi|452989027|gb|EME88782.1| hypothetical protein MYCFIDRAFT_209898 [Pseudocercospora fijiensis
CIRAD86]
Length = 260
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 80 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 139
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 140 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 199
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 200 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 259
Query: 165 V 165
Sbjct: 260 T 260
>gi|999660|pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|999661|pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|1633307|pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
gi|5822424|pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
gi|29726664|pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726668|pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726672|pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726676|pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|38492530|pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNPK
Sbjct: 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 62 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 121
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 122 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 180
>gi|393220621|gb|EJD06107.1| TATA-box binding protein, partial [Fomitiporia mediterranea MF3/22]
Length = 189
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 138/178 (77%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 11 GIIPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EF+K
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFKK 188
>gi|398406521|ref|XP_003854726.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
gi|339474610|gb|EGP89702.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
Length = 261
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 81 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 140
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 141 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 200
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 201 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 260
Query: 165 V 165
Sbjct: 261 T 261
>gi|395535316|ref|XP_003769674.1| PREDICTED: TATA-box-binding protein [Sarcophilus harrisii]
Length = 309
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 138/180 (76%), Gaps = 25/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 189 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 248
Query: 107 F-SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 249 FSSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 308
>gi|62859883|ref|NP_001017309.1| TATA box-binding protein-like protein 2 [Xenopus (Silurana)
tropicalis]
gi|123915918|sp|Q28DH2.1|TBPL2_XENTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; Short=xTBPL2; AltName:
Full=TATA box-binding protein-related factor 3;
Short=TBP-related factor 3
gi|89274001|emb|CAJ81377.1| Novel protein similar to TBP [Xenopus (Silurana) tropicalis]
Length = 322
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 143 GIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 202
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 203 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 262
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 263 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKT 321
>gi|426376979|ref|XP_004055257.1| PREDICTED: TATA box-binding protein-like protein 2 [Gorilla gorilla
gorilla]
Length = 375
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIALQA+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 317 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 375
>gi|261194208|ref|XP_002623509.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239588523|gb|EEQ71166.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239606906|gb|EEQ83893.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
ER-3]
gi|327351372|gb|EGE80229.1| hypothetical protein BDDG_03170 [Ajellomyces dermatitidis ATCC
18188]
Length = 262
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/180 (69%), Positives = 137/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 82 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 141
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 142 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 201
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRK
Sbjct: 202 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLADFRK 261
>gi|212526960|ref|XP_002143637.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526962|ref|XP_002143638.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526964|ref|XP_002143639.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|62956011|gb|AAY23352.1| TATA-binding protein [Talaromyces marneffei]
gi|62956013|gb|AAY23353.1| TATA-binding protein [Talaromyces marneffei]
gi|210073035|gb|EEA27122.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073036|gb|EEA27123.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073037|gb|EEA27124.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
Length = 255
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 197 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKT 255
>gi|402225771|gb|EJU05832.1| TBP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 235
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 57 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 116
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF +F DFKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 117 VVTGAKSEDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCDVKFPIRLEGLAYSHGQ 176
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EF+K
Sbjct: 177 FSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLQEFKK 234
>gi|401625996|gb|EJS43965.1| spt15p [Saccharomyces arboricola H-6]
Length = 240
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNP+
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|242782217|ref|XP_002479956.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|242782222|ref|XP_002479957.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720103|gb|EED19522.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720104|gb|EED19523.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
Length = 255
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 197 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKT 255
>gi|393238580|gb|EJD46116.1| TBP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 305
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 127 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 186
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 187 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 246
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF IY VL EFRK
Sbjct: 247 FSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRK 304
>gi|365761010|gb|EHN02687.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842615|gb|EJT44751.1| SPT15-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNP+
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|452839378|gb|EME41317.1| TATA-box binding-like protein [Dothistroma septosporum NZE10]
Length = 254
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 74 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 133
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 134 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 193
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 194 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 253
Query: 165 V 165
Sbjct: 254 T 254
>gi|193620436|ref|XP_001949590.1| PREDICTED: TATA-box-binding protein-like [Acyrthosiphon pisum]
Length = 298
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL C+LDLK IAL ARNAE+NPK
Sbjct: 120 GIVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKM 179
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARIIQKL FPAKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 180 VCTGAKSEEDSRLAARKYARIIQKLSFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 239
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y A++NIYP+L F+K
Sbjct: 240 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAYDNIYPILKSFKK 297
>gi|1942827|pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 62 VCTGAKSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 179
>gi|85096222|ref|XP_960219.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|28921702|gb|EAA30983.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|39979211|emb|CAE85582.1| probable TRANSCRIPTION INITIATION FACTOR TFIID [Neurospora crassa]
Length = 257
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 257
>gi|315418834|gb|ADU15470.1| TATA box binding protein [Penaeus monodon]
Length = 300
Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKL+LKKIAL ARNAEYNPK
Sbjct: 122 GIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 181
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQ S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 182 VCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 241
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVS K+V+TGAKVR++ Y AF+NIYP+L F+K
Sbjct: 242 FSSYEPELFPGLIYRMVKPRIVLLIFVSRKVVLTGAKVRNQIYEAFDNIYPILKSFKK 299
>gi|156053057|ref|XP_001592455.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980]
gi|154704474|gb|EDO04213.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 251
Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 71 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASG 130
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 131 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 190
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +F+K
Sbjct: 191 MNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 250
Query: 165 V 165
V
Sbjct: 251 V 251
>gi|407927098|gb|EKG20002.1| TATA-box binding protein [Macrophomina phaseolina MS6]
Length = 250
Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/180 (69%), Positives = 138/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 70 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 129
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 130 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 189
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 190 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 249
>gi|405124108|gb|AFR98870.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 232
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNP+
Sbjct: 53 GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKM 112
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRLEGLA+SHGA
Sbjct: 113 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGA 172
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PK+V+LIFVSGKIV+TGAKVR+E Y AF IY VL EFRK
Sbjct: 173 FSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRKT 231
>gi|58270288|ref|XP_572300.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134117708|ref|XP_772488.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255102|gb|EAL17841.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228558|gb|AAW44993.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 232
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNP+
Sbjct: 53 GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKM 112
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRLEGLA+SHGA
Sbjct: 113 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGA 172
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PK+V+LIFVSGKIV+TGAKVR+E Y AF IY VL EFRK
Sbjct: 173 FSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRKT 231
>gi|336465922|gb|EGO54087.1| hypothetical protein NEUTE1DRAFT_118055 [Neurospora tetrasperma
FGSC 2508]
gi|350287243|gb|EGZ68490.1| putative transcription initiation factor [Neurospora tetrasperma
FGSC 2509]
Length = 257
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 257
>gi|440638539|gb|ELR08458.1| TATA-box-binding protein [Geomyces destructans 20631-21]
Length = 262
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 139/187 (74%), Gaps = 24/187 (12%)
Query: 3 PYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------- 46
P + G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 76 PGATQGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 135
Query: 47 --------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE 98
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLE
Sbjct: 136 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 195
Query: 99 GLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
GLA H FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPV
Sbjct: 196 GLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPV 255
Query: 159 LTEFRKV 165
L +F+KV
Sbjct: 256 LQDFKKV 262
>gi|361131465|gb|EHL03148.1| putative TATA-box-binding protein [Glarea lozoyensis 74030]
Length = 255
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 134
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 194
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +F+K
Sbjct: 195 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 254
Query: 165 V 165
V
Sbjct: 255 V 255
>gi|321264592|ref|XP_003197013.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Cryptococcus gattii WM276]
gi|317463491|gb|ADV25226.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit), putative [Cryptococcus gattii WM276]
Length = 232
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNP+
Sbjct: 53 GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKM 112
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRLEGLA+SHGA
Sbjct: 113 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGA 172
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PK+V+LIFVSGKIV+TGAKVR+E Y AF IY VL EFRK
Sbjct: 173 FSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRKT 231
>gi|157167852|ref|XP_001662432.1| tata-box binding protein [Aedes aegypti]
gi|108871290|gb|EAT35515.1| AAEL012330-PA [Aedes aegypti]
Length = 319
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 135/173 (78%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL C+LDLKKIAL ARNAEYNPK VCTGA
Sbjct: 146 LQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ S+LAARKYARIIQKLGF AKF DFK+QN+VGSCDV+FPIRLEGL +HG FSSYE
Sbjct: 206 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYE 265
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKK 318
>gi|39725630|tpg|DAA02137.1| TPA_exp: TBP-related factor 3 [Xenopus laevis]
Length = 320
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 141 GIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 201 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F+SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 261 FNSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKT 319
>gi|207345821|gb|EDZ72518.1| YER148Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 240
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TV L C+LDLK +AL ARNAEYNP
Sbjct: 62 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGKM 121
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQK+GF AKF DFKIQNIVGSCDVKFPIRLEGLA+SHG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE IYPVL+EFRK+
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM 240
>gi|322711070|gb|EFZ02644.1| TATA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 253
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|37726863|gb|AAO34522.1| TATA-binding protein [Ginglymostoma cirratum]
Length = 302
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAE PK
Sbjct: 123 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEKKPKRFAAVIMRIREPRTTALIFSSGKM 182
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 183 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 242
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 243 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 301
>gi|401886560|gb|EJT50588.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 2479]
gi|406698490|gb|EKD01726.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 8904]
Length = 231
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 139/180 (77%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V ++NIV+TVNL+C+LDLK IAL ARNAEYNPK
Sbjct: 50 VQGLVPVLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASG 109
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDVKFPIRLEGLA+SH
Sbjct: 110 KMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAFSH 169
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
GAFSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF+ IY VL EFRK
Sbjct: 170 GAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFKQIYSVLVEFRK 229
>gi|390333257|ref|XP_795391.3| PREDICTED: TATA-box-binding protein-like [Strongylocentrotus
purpuratus]
Length = 262
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL+C+LDLKKIAL ARNAEYNPK
Sbjct: 83 GIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 142
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYAR++QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 143 VCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 202
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF NIYP+L F+K
Sbjct: 203 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKKT 261
>gi|340939166|gb|EGS19788.1| putative tata-box binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 255
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 255
>gi|336276668|ref|XP_003353087.1| hypothetical protein SMAC_03405 [Sordaria macrospora k-hell]
gi|380092572|emb|CCC09849.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 257
>gi|367029935|ref|XP_003664251.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
gi|347011521|gb|AEO59006.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
Length = 257
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 79 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 257
>gi|154318373|ref|XP_001558505.1| transcription initiation factor TFIID, TATA binding protein
[Botryotinia fuckeliana B05.10]
gi|347837614|emb|CCD52186.1| similar to transcription initiation factor TFIID [Botryotinia
fuckeliana]
Length = 251
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 71 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASG 130
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 131 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 190
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +F+K
Sbjct: 191 MNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 250
Query: 165 V 165
V
Sbjct: 251 V 251
>gi|20799106|dbj|BAB92075.1| TATA binding protein [Hemicentrotus pulcherrimus]
Length = 250
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL+C+LDLKKIAL ARNAEYNPK
Sbjct: 71 GIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 130
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYAR++QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 131 VCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 190
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF NIYP+L F+K
Sbjct: 191 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKKT 249
>gi|346974478|gb|EGY17930.1| TATA-box-binding protein [Verticillium dahliae VdLs.17]
Length = 249
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 71 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 130
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 131 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 190
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 191 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 249
>gi|408395610|gb|EKJ74788.1| hypothetical protein FPSE_05036 [Fusarium pseudograminearum CS3096]
Length = 254
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 76 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 135
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 136 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 195
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 196 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 254
>gi|342879468|gb|EGU80715.1| hypothetical protein FOXB_08755 [Fusarium oxysporum Fo5176]
Length = 254
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 76 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 135
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 136 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 195
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 196 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 254
>gi|413933536|gb|AFW68087.1| TATA-binding protein2 [Zea mays]
Length = 139
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/121 (96%), Positives = 121/121 (100%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 19 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 78
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL+EFRK+Q
Sbjct: 79 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQ 138
Query: 167 Q 167
Q
Sbjct: 139 Q 139
>gi|171681966|ref|XP_001905926.1| hypothetical protein [Podospora anserina S mat+]
gi|170940942|emb|CAP66592.1| unnamed protein product [Podospora anserina S mat+]
Length = 255
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRK+
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKM 255
>gi|351714662|gb|EHB17581.1| TATA-box-binding protein [Heterocephalus glaber]
Length = 300
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 121 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 180
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS ARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 181 VCTGAKSEEQSSRLARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 240
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 241 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 299
>gi|332237163|ref|XP_003267773.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Nomascus leucogenys]
Length = 379
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 201 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 260
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 261 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 320
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 321 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 379
>gi|170044283|ref|XP_001849783.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|170067801|ref|XP_001868625.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167863845|gb|EDS27228.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167867494|gb|EDS30877.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 322
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 135/173 (78%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL C+LDLKKIAL ARNAEYNPK VCTGA
Sbjct: 149 LQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ S+LAARKYARIIQKLGF AKF DFK+QN+VGSCDV+FPIRLEGL +HG FSSYE
Sbjct: 209 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYE 268
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 269 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKK 321
>gi|170674514|gb|ACB30147.1| TATA binding protein [Epichloe festucae]
Length = 256
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 78 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 137
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 138 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 197
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 198 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 256
>gi|397523415|ref|XP_003831727.1| PREDICTED: TATA box-binding protein-like protein 2 [Pan paniscus]
gi|410048302|ref|XP_003952543.1| PREDICTED: TATA box binding protein like 2 [Pan troglodytes]
Length = 375
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 317 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 375
>gi|391336328|ref|XP_003742533.1| PREDICTED: TATA-box-binding protein-like [Metaseiulus occidentalis]
Length = 295
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 121/177 (68%), Positives = 136/177 (76%), Gaps = 24/177 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ ++NIVSTVNL C+LDLKKIALQARNAEYNPK VC
Sbjct: 119 IPQLQNIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 178
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE QS+LAARKYARI+QKLGF AKF DFKIQN+VGSCDV+FPIRLEGL +H FS
Sbjct: 179 TGAKSEDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHCQFS 238
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L FRK
Sbjct: 239 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRKT 295
>gi|39930602|ref|NP_950248.1| TATA box-binding protein-like protein 2 [Homo sapiens]
gi|74749326|sp|Q6SJ96.1|TBPL2_HUMAN RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569209|gb|AAR24281.1| TBP-related factor 3 [Homo sapiens]
gi|90296776|gb|ABD93323.1| TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 317 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 375
>gi|358386238|gb|EHK23834.1| hypothetical protein TRIVIDRAFT_89322 [Trichoderma virens Gv29-8]
Length = 253
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|109658498|gb|AAI17186.1| TATA box binding protein like 2 [Homo sapiens]
gi|109658806|gb|AAI17160.1| TATA box binding protein like 2 [Homo sapiens]
gi|313883330|gb|ADR83151.1| TATA box binding protein like 2 [synthetic construct]
Length = 375
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 317 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 375
>gi|335280289|ref|XP_001924325.3| PREDICTED: TATA box-binding protein-like protein 2-like [Sus
scrofa]
Length = 379
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/179 (65%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 201 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIREPRTTALIFSSGKM 260
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LA+RKYAR++QKLGFPA+F +FKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 261 VCTGAKSEEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRFPIRLEGLVLTHPE 320
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L +F+K
Sbjct: 321 FSSYEPELFPGLIYRMVKPQIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKDFKKA 379
>gi|310798673|gb|EFQ33566.1| transcription factor TFIID [Glomerella graminicola M1.001]
Length = 256
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 78 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 137
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 138 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 197
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 198 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 256
>gi|119601081|gb|EAW80675.1| TATA box binding protein like 2, isoform CRA_a [Homo sapiens]
Length = 307
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 129 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 188
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 189 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 248
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 249 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 306
>gi|340517005|gb|EGR47251.1| TATA binding protein [Trichoderma reesei QM6a]
Length = 253
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|389632499|ref|XP_003713902.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|351646235|gb|EHA54095.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|440473248|gb|ELQ42063.1| TATA-box-binding protein [Magnaporthe oryzae Y34]
gi|440480212|gb|ELQ60887.1| TATA-box-binding protein [Magnaporthe oryzae P131]
Length = 255
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 255
>gi|358394886|gb|EHK44279.1| hypothetical protein TRIATDRAFT_300545 [Trichoderma atroviride IMI
206040]
Length = 253
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|109083719|ref|XP_001088740.1| PREDICTED: TATA box-binding protein-like protein 2-like [Macaca
mulatta]
Length = 376
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 198 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 257
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 258 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 317
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 318 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 376
>gi|402876253|ref|XP_003901890.1| PREDICTED: TATA box-binding protein-like protein 2 [Papio anubis]
Length = 376
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 198 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 257
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 258 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 317
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 318 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 376
>gi|355778612|gb|EHH63648.1| hypothetical protein EGM_16656 [Macaca fascicularis]
Length = 376
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 198 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 257
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 258 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 317
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 318 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 376
>gi|429859533|gb|ELA34313.1| RNA polymerase i and iii transcription factor complex component
[Colletotrichum gloeosporioides Nara gc5]
Length = 256
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 78 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 137
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 138 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 197
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 198 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 256
>gi|224051924|ref|XP_002200431.1| PREDICTED: TATA box-binding protein-like protein 2 [Taeniopygia
guttata]
Length = 322
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 143 GIVPQLQNIVSTVNLACKLDLKNIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 202
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 203 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 262
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGL+YRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 263 FSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKDRSEIYEAFENIYPILRGFKK 320
>gi|303283248|ref|XP_003060915.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
gi|226457266|gb|EEH54565.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
Length = 249
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDCKLDLK IA ARN EYNPK
Sbjct: 41 GIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKM 100
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAK+E ++ AARKYA++I KLGFPA+FK+FKIQN+VGSCDVKFPIRLEGLA+SHG
Sbjct: 101 VCTGAKTEALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAWSHGH 160
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F+ YEPELFPGLIYRM PKIVLLIFVSGKIV+TG K R++ Y AFENIYPVLTEFRKV
Sbjct: 161 FAQYEPELFPGLIYRMVVPKIVLLIFVSGKIVLTGGKKREDIYQAFENIYPVLTEFRKV 219
>gi|367040469|ref|XP_003650615.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
gi|346997876|gb|AEO64279.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
Length = 256
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 78 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 137
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 138 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 197
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRK+
Sbjct: 198 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKI 256
>gi|302918240|ref|XP_003052617.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733557|gb|EEU46904.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 253
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|355693296|gb|EHH27899.1| hypothetical protein EGK_18211 [Macaca mulatta]
Length = 376
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 198 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 257
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 258 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 317
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 318 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 376
>gi|3599497|gb|AAC35362.1| TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKL+LKKIAL ARNAEYNPK
Sbjct: 92 GIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 151
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYAR++QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 152 VCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 211
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF NIYP+L F+K
Sbjct: 212 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKKT 270
>gi|402086781|gb|EJT81679.1| TATA-box-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 255
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 255
>gi|241949839|ref|XP_002417642.1| TATA sequence-binding protein, putative; TATA-binding factor,
putative; TATA-box binding protein, putative; TATA-box
factor, putative; transcription initiation factor tfIID
TBP subunit, putative [Candida dubliniensis CD36]
gi|223640980|emb|CAX45328.1| TATA sequence-binding protein, putative [Candida dubliniensis CD36]
Length = 233
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
+G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 54 IGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 113
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGS DVKF IRLEGLA++HG
Sbjct: 114 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHG 173
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE+IYPVL EFRK
Sbjct: 174 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 232
>gi|344273811|ref|XP_003408712.1| PREDICTED: TATA box-binding protein-like protein 2-like [Loxodonta
africana]
Length = 344
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 166 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 225
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 226 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 285
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 286 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 344
>gi|400597791|gb|EJP65515.1| transcription factor TFIID [Beauveria bassiana ARSEF 2860]
Length = 253
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 253
>gi|406862826|gb|EKD15875.1| transcription initiation factor TFIID-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 264
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 138/181 (76%), Gaps = 24/181 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 84 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 143
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 144 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 203
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +F+K
Sbjct: 204 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 263
Query: 165 V 165
V
Sbjct: 264 V 264
>gi|326921220|ref|XP_003206860.1| PREDICTED: TATA box-binding protein-like protein 2-like [Meleagris
gallopavo]
Length = 328
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL ARNAEYNPK
Sbjct: 149 GIVPQLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 208
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 209 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 268
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 269 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILRGFKKA 327
>gi|255728115|ref|XP_002548983.1| TATA-box binding protein [Candida tropicalis MYA-3404]
gi|240133299|gb|EER32855.1| TATA-box binding protein [Candida tropicalis MYA-3404]
Length = 257
Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/178 (70%), Positives = 137/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 79 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 138
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGS DVKF IRLEGLA++HG
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGT 198
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE+IYPVL EFRK
Sbjct: 199 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 256
>gi|238878530|gb|EEQ42168.1| TATA-box binding protein [Candida albicans WO-1]
Length = 238
Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 138/179 (77%), Gaps = 24/179 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
+G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 59 IGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 118
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGS DVKF IRLEGLA++HG
Sbjct: 119 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHG 178
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE+IYPVL EFRK
Sbjct: 179 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 237
>gi|195425556|ref|XP_002061064.1| GK10649 [Drosophila willistoni]
gi|194157149|gb|EDW72050.1| GK10649 [Drosophila willistoni]
Length = 351
Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 172 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 231
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 232 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHCN 291
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 292 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 349
>gi|123909816|sp|Q1JPY4.1|TBPL2_DANRE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|94574475|gb|AAI16554.1| TATA box binding protein like 2 [Danio rerio]
gi|182890344|gb|AAI64097.1| Tbpl2 protein [Danio rerio]
Length = 312
Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C LDLK IALQARNAEYNPK
Sbjct: 134 GIIPQLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 193
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV FPIRLEGL +H
Sbjct: 194 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQ 253
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L FRK
Sbjct: 254 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFRK 311
>gi|149642959|ref|NP_001092323.1| TATA box-binding protein-like protein 2 [Gallus gallus]
gi|148910849|tpg|DAA06035.1| TPA_inf: TATA box binding protein-like 2 [Gallus gallus]
Length = 328
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL ARNAEYNPK
Sbjct: 149 GIVPQLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 208
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 209 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 268
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 269 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILRGFKKA 327
>gi|47550887|ref|NP_999961.1| TATA box-binding protein-like protein 2 [Danio rerio]
gi|32765839|gb|AAP87373.1| TATA-binding protein 2 [Danio rerio]
Length = 312
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C LDLK IALQARNAEYNPK
Sbjct: 134 GIIPQLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 193
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV FPIRLEGL +H
Sbjct: 194 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQ 253
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L FRK
Sbjct: 254 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFRK 311
>gi|194881988|ref|XP_001975095.1| GG20753 [Drosophila erecta]
gi|190658282|gb|EDV55495.1| GG20753 [Drosophila erecta]
Length = 349
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 170 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 229
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 230 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 289
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 290 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 347
>gi|47551211|ref|NP_999786.1| TATA-box-binding protein [Strongylocentrotus purpuratus]
gi|3122940|sp|P91809.1|TBP_STRPU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1840134|gb|AAB47272.1| TATA binding protein [Strongylocentrotus purpuratus]
Length = 265
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL+C+LDLKKIAL ARNAEYNPK
Sbjct: 86 GIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 145
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAK E S+LAARKYAR++QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 146 VCTGAKREDNSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 205
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF NIYP+L F+K
Sbjct: 206 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKKT 264
>gi|194755930|ref|XP_001960232.1| GF11627 [Drosophila ananassae]
gi|190621530|gb|EDV37054.1| GF11627 [Drosophila ananassae]
Length = 348
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 169 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 228
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 229 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 288
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 289 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 346
>gi|195403015|ref|XP_002060091.1| GJ14917 [Drosophila virilis]
gi|194149413|gb|EDW65108.1| GJ14917 [Drosophila virilis]
Length = 352
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 173 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 232
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 233 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 292
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 293 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 350
>gi|1016266|gb|AAA79092.1| TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 175 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 234
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 235 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 294
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 295 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 352
>gi|195380351|ref|XP_002048934.1| Tbp [Drosophila virilis]
gi|194143731|gb|EDW60127.1| Tbp [Drosophila virilis]
Length = 351
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 172 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 231
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 232 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 291
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 292 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 349
>gi|125807343|ref|XP_001360369.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|195149788|ref|XP_002015837.1| GL11271 [Drosophila persimilis]
gi|54635541|gb|EAL24944.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|194109684|gb|EDW31727.1| GL11271 [Drosophila persimilis]
Length = 345
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 166 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 225
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 226 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 285
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 286 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 343
>gi|195057981|ref|XP_001995362.1| GH23121 [Drosophila grimshawi]
gi|193899568|gb|EDV98434.1| GH23121 [Drosophila grimshawi]
Length = 348
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 169 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 228
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 229 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 288
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 289 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 346
>gi|17647997|ref|NP_523805.1| TATA binding protein [Drosophila melanogaster]
gi|135636|sp|P20227.1|TBP_DROME RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|158532|gb|AAA28926.1| TATA-consensus-binding transcription factor TFII [Drosophila
melanogaster]
gi|158542|gb|AAA28931.1| TATA-box binding protein [Drosophila melanogaster]
gi|515665|gb|AAA68629.1| TATA-box binding protein [Drosophila melanogaster]
gi|7291324|gb|AAF46754.1| TATA binding protein [Drosophila melanogaster]
gi|17862662|gb|AAL39808.1| LD44083p [Drosophila melanogaster]
gi|220942262|gb|ACL83674.1| Tbp-PA [synthetic construct]
gi|220952470|gb|ACL88778.1| Tbp-PA [synthetic construct]
Length = 353
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 174 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 233
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 234 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 293
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 294 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 351
>gi|195486396|ref|XP_002091492.1| GE13685 [Drosophila yakuba]
gi|194177593|gb|EDW91204.1| GE13685 [Drosophila yakuba]
Length = 349
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 170 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 229
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 230 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 289
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 290 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 347
>gi|195346517|ref|XP_002039804.1| GM15696 [Drosophila sechellia]
gi|194135153|gb|EDW56669.1| GM15696 [Drosophila sechellia]
Length = 352
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 173 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 232
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 233 VCTGAKSEDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 292
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 293 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 350
>gi|195585514|ref|XP_002082526.1| GD25175 [Drosophila simulans]
gi|194194535|gb|EDX08111.1| GD25175 [Drosophila simulans]
Length = 352
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 173 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 232
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 233 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 292
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 293 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 350
>gi|322698718|gb|EFY90486.1| TATA binding protein [Metarhizium acridum CQMa 102]
Length = 260
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/186 (67%), Positives = 136/186 (73%), Gaps = 31/186 (16%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPKRFAAVIMRIREPKTTAL 134
Query: 47 -------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 99
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEG
Sbjct: 135 IFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEG 194
Query: 100 LAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
LA H FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL
Sbjct: 195 LASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVL 254
Query: 160 TEFRKV 165
+FRKV
Sbjct: 255 QDFRKV 260
>gi|346323634|gb|EGX93232.1| TATA-box binding protein [Cordyceps militaris CM01]
Length = 264
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRK
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKA 253
>gi|229577173|ref|NP_001153317.1| TATA binding protein [Nasonia vitripennis]
Length = 306
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/173 (69%), Positives = 134/173 (77%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIVSTVNL+ KLDLKKIAL ARNAE+ PK VCTGA
Sbjct: 133 VQNIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 192
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H FSSYE
Sbjct: 193 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYE 252
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+NIYP+L F+K
Sbjct: 253 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKK 305
>gi|68490865|ref|XP_710759.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
gi|68490947|ref|XP_710721.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|3334374|sp|O43133.1|TBP_CANAL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2708495|gb|AAC49985.1| TATA-binding protein [Candida albicans]
gi|2708497|gb|AAC49986.1| TATA-binding protein [Candida albicans]
gi|46431958|gb|EAK91473.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|46432000|gb|EAK91511.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
Length = 238
Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/176 (70%), Positives = 136/176 (77%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK V
Sbjct: 62 VPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVV 121
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGS DVKF IRLEGLA++HG FS
Sbjct: 122 TGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFS 181
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R+E Y AFE+IYPVL EFRK
Sbjct: 182 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 237
>gi|302663669|ref|XP_003023473.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
gi|291187474|gb|EFE42855.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
Length = 275
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/176 (69%), Positives = 134/176 (76%), Gaps = 24/176 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 196
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT
Sbjct: 197 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLT 252
>gi|154284482|ref|XP_001543036.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
gi|150406677|gb|EDN02218.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
Length = 268
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/177 (69%), Positives = 135/177 (76%), Gaps = 24/177 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 82 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 141
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA++KYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 142 KMVVTGAKSEDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 201
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLTE
Sbjct: 202 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTE 258
>gi|195122370|ref|XP_002005684.1| GI18943 [Drosophila mojavensis]
gi|193910752|gb|EDW09619.1| GI18943 [Drosophila mojavensis]
Length = 348
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK+IAL ARNAEYNPK
Sbjct: 169 GIVPQLQNIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 228
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 229 VCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCN 288
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AF+ I+P+L +F+K
Sbjct: 289 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 346
>gi|444728605|gb|ELW69055.1| TATA box-binding protein-like protein 2 [Tupaia chinensis]
Length = 378
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/177 (67%), Positives = 136/177 (76%), Gaps = 24/177 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK VC
Sbjct: 202 VPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 261
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H FS
Sbjct: 262 TGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFS 321
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
SYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 322 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKVFKKA 378
>gi|348573495|ref|XP_003472526.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cavia
porcellus]
Length = 397
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 219 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 278
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+F IRLEGL +H
Sbjct: 279 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQ 338
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 339 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKSFKK 396
>gi|1174643|sp|P46272.1|TBP_ACECL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2654376|emb|CAA82267.1| TATA box binding protein [Acetabularia peniculus]
Length = 191
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++N+VSTVNL C L+LK+IA+QARNAEYNPK
Sbjct: 13 GIIPELQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKM 72
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSEQ S+ AARKYA+I+QKLGFPAKF +FKIQNIVGSCDVKFPIR+E LAY H
Sbjct: 73 VCTGAKSEQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRMEPLAYQHQQ 132
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F SYEPELFPGLIYRM QPKIVLLIFVSGK+V+TGAK R E Y AFE IYPVLT+FRK
Sbjct: 133 FCSYEPELFPGLIYRMLQPKIVLLIFVSGKVVLTGAKERTEIYRAFEQIYPVLTQFRK 190
>gi|169606198|ref|XP_001796519.1| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
gi|160706937|gb|EAT85966.2| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
Length = 247
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL +LDLK IAL ARNAEYNPK
Sbjct: 69 GIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKM 128
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 129 VVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHT 188
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 189 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 246
>gi|297695161|ref|XP_002824816.1| PREDICTED: TATA box-binding protein-like protein 2 [Pongo abelii]
Length = 375
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/179 (66%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 197 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 256
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+F IRLEGL +H
Sbjct: 257 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQ 316
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 317 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 375
>gi|145352509|ref|XP_001420584.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580819|gb|ABO98877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 226
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/181 (65%), Positives = 137/181 (75%), Gaps = 24/181 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV+TVNLDCKLDLK IA ARN EYNPK
Sbjct: 28 GIVPVLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSSGKM 87
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAK+E ++ AARKYA++I KLGFPA+FKDFKIQN+VGSCDV+FPIRLEGLA+ HG
Sbjct: 88 VCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQHGH 147
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
F+ YEPELFPGLIYRM+ PKIVLLIFVSGKIV+TG K R++ Y AFENIYPVLTEF+K+
Sbjct: 148 FAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQAFENIYPVLTEFKKLA 207
Query: 167 Q 167
Q
Sbjct: 208 Q 208
>gi|396467023|ref|XP_003837823.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
gi|312214387|emb|CBX94379.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
Length = 246
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL +LDLK IAL ARNAEYNPK
Sbjct: 68 GIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKM 127
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 128 VVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHT 187
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 188 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 245
>gi|242039091|ref|XP_002466940.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
gi|241920794|gb|EER93938.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
Length = 225
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 141/182 (77%), Gaps = 25/182 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNL CKLDL++IA ARNAEYNPK
Sbjct: 41 GFVPTLQNIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRDPKTTALVFASGKM 100
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAKSE+ S+LA RK+ARI+ KLGF A+FKDFKIQNIVGSCDVKFPIRLEGLA + G
Sbjct: 101 VCTGAKSEEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVKFPIRLEGLALASG 160
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F++YEPE+FPGLIYRM +PKIV+LIFVSGKIV+TGAKVR+E YTAFENIYP+L +FRK
Sbjct: 161 TFANYEPEIFPGLIYRMVEPKIVILIFVSGKIVLTGAKVREEIYTAFENIYPMLVQFRKR 220
Query: 166 QQ 167
QQ
Sbjct: 221 QQ 222
>gi|320591748|gb|EFX04187.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 265
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/179 (68%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNL C+LDLK IAL ARNAEYNPK
Sbjct: 87 GLTPTLQNIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 146
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFP+RLEGLA H
Sbjct: 147 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPVRLEGLASRHHN 206
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGK V+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 207 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKTVLTGAKVREEIYQAFEMIYPVLQDFRKV 265
>gi|296215093|ref|XP_002807283.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Callithrix jacchus]
Length = 373
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/179 (66%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 195 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 254
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGA+SE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 255 VCTGARSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 314
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E AFENIYP+L F+K
Sbjct: 315 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILKGFKKA 373
>gi|71012922|ref|XP_758541.1| transcription initiation factor TFIID-1 [Ustilago maydis 521]
gi|46098199|gb|EAK83432.1| TF21_MAIZE Transcription initiation factor TFIID-1 (TATA-box factor
1) (TATA sequence-binding protein 1) (TBP-1) [Ustilago
maydis 521]
Length = 189
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 137/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+ +LDLK IAL ARNAEYNPK
Sbjct: 9 VHGIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 68
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAYSH
Sbjct: 69 KMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSH 128
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G +SSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF I PVL EFRK
Sbjct: 129 GVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 188
>gi|89267100|emb|CAJ41964.1| TF21_MAIZE Transcription initiation factor TFIID-1 [Ustilago
hordei]
gi|388856434|emb|CCF49983.1| probable TATA-box-binding factor TBP [Ustilago hordei]
Length = 239
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 137/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+ +LDLK IAL ARNAEYNPK
Sbjct: 59 VHGIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 118
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAYSH
Sbjct: 119 KMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSH 178
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G +SSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF I PVL EFRK
Sbjct: 179 GVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 238
>gi|451854730|gb|EMD68022.1| hypothetical protein COCSADRAFT_156488 [Cochliobolus sativus
ND90Pr]
gi|452000886|gb|EMD93346.1| hypothetical protein COCHEDRAFT_1153946 [Cochliobolus
heterostrophus C5]
Length = 249
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL +LDLK IAL ARNAEYNPK
Sbjct: 71 GIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKM 130
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF DFKIQNIVGSCD++FPIRLEGLA H
Sbjct: 131 VVTGAKSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHT 190
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 191 FSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 248
>gi|189192825|ref|XP_001932751.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330941403|ref|XP_003306059.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
gi|187978315|gb|EDU44941.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311316652|gb|EFQ85856.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
Length = 249
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL +LDLK IAL ARNAEYNPK
Sbjct: 71 GIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKM 130
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF DFKIQNIVGSCD++FPIRLEGLA H
Sbjct: 131 VVTGAKSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHT 190
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL++FRK
Sbjct: 191 FSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 248
>gi|343427608|emb|CBQ71135.1| probable TATA-box-binding factor TBP [Sporisorium reilianum SRZ2]
Length = 241
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 137/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+ +LDLK IAL ARNAEYNPK
Sbjct: 61 VHGIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 120
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAYSH
Sbjct: 121 KMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSH 180
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G +SSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF I PVL EFRK
Sbjct: 181 GVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 240
>gi|338726931|ref|XP_001496050.2| PREDICTED: TATA box-binding protein-like protein 2-like [Equus
caballus]
Length = 555
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 116/178 (65%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDLKKIALQARNAEYNPK
Sbjct: 377 GTVPQLQNVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKI 436
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGA+SE+QS+LAARK+AR+IQKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 437 VCTGARSEEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRFPIRLEGLVLTHQQ 496
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F SYEPELFPGLIYRM P++VLLIFVSGK+V+TGAK R E Y AF+NIYP+L F K
Sbjct: 497 FCSYEPELFPGLIYRMVNPRVVLLIFVSGKVVLTGAKERSEIYEAFKNIYPILKNFEK 554
>gi|443688559|gb|ELT91221.1| hypothetical protein CAPTEDRAFT_209597 [Capitella teleta]
Length = 209
Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV TVN+ CKL+LK+IAL ARNAEYNPK
Sbjct: 31 GIVPQLQNIVCTVNMACKLELKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 90
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE Q+KLAARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 91 VCTGAKSEDQAKLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 150
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F+K
Sbjct: 151 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFKK 208
>gi|443895156|dbj|GAC72502.1| hypothetical protein PANT_7d00127 [Pseudozyma antarctica T-34]
Length = 238
Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 137/180 (76%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+ +LDLK IAL ARNAEYNPK
Sbjct: 58 VHGIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 117
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAYSH
Sbjct: 118 KMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSH 177
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G +SSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E Y AF I PVL EFRK
Sbjct: 178 GVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 237
>gi|134083254|emb|CAK46825.1| unnamed protein product [Aspergillus niger]
gi|350633630|gb|EHA21995.1| hypothetical protein ASPNIDRAFT_210581 [Aspergillus niger ATCC
1015]
Length = 282
Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 84 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 143
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 144 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 203
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+ +
Sbjct: 204 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSGMHR 261
>gi|121705502|ref|XP_001271014.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
gi|119399160|gb|EAW09588.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
Length = 273
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 133/174 (76%), Gaps = 24/174 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 86 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 145
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 146 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 205
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+
Sbjct: 206 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLS 259
>gi|259482151|tpe|CBF76358.1| TPA: TATA-box-binding protein (TATA-box factor)(TATA-binding
factor)(TATA sequence-binding
protein)(TBP)(Transcription initiation factor TFIID TBP
subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q12731]
[Aspergillus nidulans FGSC A4]
Length = 284
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 138/195 (70%), Gaps = 40/195 (20%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 90 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 149
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 150 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 209
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL------- 159
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL
Sbjct: 210 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSGKLPTF 269
Query: 160 ---------TEFRKV 165
T+FRKV
Sbjct: 270 DIRTPANFGTDFRKV 284
>gi|70999782|ref|XP_754608.1| RNA polymerase I and III transcription factor complex component Tbp
[Aspergillus fumigatus Af293]
gi|66852245|gb|EAL92570.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus Af293]
gi|159127621|gb|EDP52736.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus A1163]
Length = 283
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 133/174 (76%), Gaps = 24/174 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 86 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 145
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 146 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 205
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+
Sbjct: 206 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLS 259
>gi|431895824|gb|ELK05242.1| TATA box-binding protein-like protein 2 [Pteropus alecto]
Length = 342
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVST NL CKLDLKKIAL A+NAEYNPK
Sbjct: 164 GIMPQLQNIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 223
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+F IRLEGL +H
Sbjct: 224 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQ 283
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 284 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 341
>gi|55583664|gb|AAV53354.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 340
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G ++N+V+TVNL KLDLK+IA+ ARNAEYNPK
Sbjct: 30 VSGITPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASG 89
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAKSE S+ AAR+YA+I+QKLGFPA FK+FKIQNIVGSCDVKFPIRLEGLAY+H
Sbjct: 90 KMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAH 149
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F+SYEPELFPGLIYRMKQPKIVLLIFVSGK+V+TGAK R E Y A+ NIYP L +++K
Sbjct: 150 SLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKK 209
>gi|353234891|emb|CCA66911.1| probable TATA-box-binding factor TBP [Piriformospora indica DSM
11827]
Length = 297
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV+TVNL +LDLK IA+ ARNAEYNPK
Sbjct: 119 GIVPILQNIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGQM 178
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF AKF +FKIQNIVGSCDVKFPIRLEGL Y HG
Sbjct: 179 VVTGAKSEDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYGHGK 238
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IYPVL EF+K
Sbjct: 239 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNVIYPVLREFKK 296
>gi|74095979|ref|NP_001027845.1| TATA box-binding protein-like protein 2 [Takifugu rubripes]
gi|82127187|sp|Q6SJ94.1|TBPL2_FUGRU RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569213|gb|AAR24283.1| TBP-related factor 3 [Takifugu rubripes]
gi|148910851|tpg|DAA06036.1| TPA_inf: TATA box binding protein-like 2 [Takifugu rubripes]
Length = 322
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C LDLK IALQARNAEYNPK
Sbjct: 144 GIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 203
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+V SCDV FPIRLEGL +H
Sbjct: 204 VCTGAKSEEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVLTHQQ 263
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L FRK
Sbjct: 264 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILRGFRK 321
>gi|378727024|gb|EHY53483.1| TATA-box-binding protein [Exophiala dermatitidis NIH/UT8656]
Length = 268
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/176 (68%), Positives = 133/176 (75%), Gaps = 24/176 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 80 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 139
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 140 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKH 199
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYP L+
Sbjct: 200 HPFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEQIYPTLS 255
>gi|79313217|ref|NP_001030688.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|332641835|gb|AEE75356.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
Length = 196
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/158 (77%), Positives = 127/158 (80%), Gaps = 24/158 (15%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH A
Sbjct: 80 VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAA 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144
FSSYEPELFPGLIYRMK PKIVLLIFVSGKIVITGAKV
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKV 177
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QNIV + ++ + L+ +A + Y P+ F +I R+++PK LIF SGK+V TG
Sbjct: 25 LQNIVSTVNLDCKLDLKAIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 83
Query: 142 AKVRD 146
AK D
Sbjct: 84 AKSED 88
>gi|17298080|dbj|BAB78514.1| TATA-box binding protein [Ephydatia fluviatilis]
Length = 281
Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 119/180 (66%), Positives = 132/180 (73%), Gaps = 24/180 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
+G ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 102 IGIEPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALVFSSGK 161
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAKSE S+LAARKYARIIQKLGFPA+F +FKIQN+VGSCDVKFPIRLEGL H
Sbjct: 162 MVCTGAKSEDLSRLAARKYARIIQKLGFPARFMEFKIQNMVGSCDVKFPIRLEGLVVQHS 221
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E AF NIYP+L F+K
Sbjct: 222 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERTEIIEAFHNIYPILKNFKKT 281
>gi|67537612|ref|XP_662580.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
gi|40741864|gb|EAA61054.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
Length = 211
Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 133/174 (76%), Gaps = 24/174 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 17 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 76
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 77 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 136
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL+
Sbjct: 137 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLS 190
>gi|291403917|ref|XP_002718356.1| PREDICTED: TATA box binding protein like 2-like [Oryctolagus
cuniculus]
Length = 345
Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 119/180 (66%), Positives = 137/180 (76%), Gaps = 25/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 166 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 225
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLG+PA+F DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 226 VCTGAKSEEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 285
Query: 107 F-SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 286 FSSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 345
>gi|159465587|ref|XP_001691004.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158279690|gb|EDP05450.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 325
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G ++N+V+TVNL KLDLK+IA+ ARNAEYNPK
Sbjct: 26 VSGIKPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASG 85
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAKSE S+ AAR+YA+I+QKLGFPA FK+FKIQNIVGSCDVKFPIRLEGLAY+H
Sbjct: 86 KMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAH 145
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F+SYEPELFPGLIYRMKQPKIVLLIFVSGK+V+TGAK R E Y A+ NIYP L +++K
Sbjct: 146 SLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRGEIYQAYMNIYPTLIQYKK 205
>gi|440897977|gb|ELR49561.1| TATA box-binding protein-like protein 2, partial [Bos grunniens
mutus]
Length = 374
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 196 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 255
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DF IQN+V SCDV+FPI LEGL +H
Sbjct: 256 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQ 315
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R + Y AFENIYP+L F+K
Sbjct: 316 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKKA 374
>gi|47214810|emb|CAF89637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 309
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C LDLK IALQARNAEYNPK
Sbjct: 131 GIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 190
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+V SCDV FPIRLEGL +H
Sbjct: 191 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQ 250
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L FRK
Sbjct: 251 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILRGFRK 308
>gi|345803952|ref|XP_853710.2| PREDICTED: TATA box binding protein like 2 [Canis lupus familiaris]
Length = 431
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/178 (66%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 253 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 312
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+F I LEGL +H
Sbjct: 313 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAISLEGLVLTHQQ 372
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 373 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 430
>gi|297479762|ref|XP_002690959.1| PREDICTED: TATA box binding protein like 2 [Bos taurus]
gi|296483126|tpg|DAA25241.1| TPA: TATA box binding protein like 2-like [Bos taurus]
Length = 341
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 163 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 222
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DF IQN+V SCDV+FPI LEGL +H
Sbjct: 223 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQ 282
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R + Y AFENIYP+L F+K
Sbjct: 283 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKKA 341
>gi|426234189|ref|XP_004011082.1| PREDICTED: TATA box-binding protein-like protein 2 [Ovis aries]
Length = 443
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 265 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 324
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DF IQN+V SCDV+FPI LEGL +H
Sbjct: 325 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQ 384
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R + Y AFENIYP+L F+K
Sbjct: 385 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKKA 443
>gi|126282854|ref|XP_001376601.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Monodelphis domestica]
Length = 342
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 164 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 223
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARK+AR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLE L +H
Sbjct: 224 VCTGAKSEELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLESLVLTHQQ 283
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGL+YRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 284 FSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 342
>gi|194670970|ref|XP_871896.3| PREDICTED: TATA box binding protein like 2 [Bos taurus]
Length = 377
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 199 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 258
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F DF IQN+V SCDV+FPI LEGL +H
Sbjct: 259 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQ 318
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R + Y AFENIYP+L F+K
Sbjct: 319 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKKA 377
>gi|380491274|emb|CCF35436.1| TATA-box-binding protein [Colletotrichum higginsianum]
Length = 304
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/173 (69%), Positives = 131/173 (75%), Gaps = 24/173 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 80 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 139
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 140 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 199
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL
Sbjct: 200 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVL 252
>gi|348539536|ref|XP_003457245.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/178 (66%), Positives = 134/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NIVSTVNL C LDLK IALQARNAEYNPK
Sbjct: 141 GIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 200
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPA+F +FKIQN+V SCDV FPIRLEGL +H
Sbjct: 201 VCTGAKSEEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQ 260
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L FRK
Sbjct: 261 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILKGFRK 318
>gi|255552716|ref|XP_002517401.1| TATA-box binding protein, putative [Ricinus communis]
gi|223543412|gb|EEF44943.1| TATA-box binding protein, putative [Ricinus communis]
Length = 190
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/172 (68%), Positives = 131/172 (76%), Gaps = 25/172 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNLDCKLDLK IAL +RN+EYNP+ VCTGA
Sbjct: 17 LQNIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTALLFASGKMVCTGA 76
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSY 110
KSE QSK+AARKYARI+QKLGFPAKFKDFKIQNIV SCDV F IRLE YS H AFSSY
Sbjct: 77 KSEAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLEKFVYSKHAAFSSY 136
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE+FPG+IYRM +PKIV+LIFVSGKIVITGAK R++TY AF NIYPVL F
Sbjct: 137 EPEIFPGMIYRMTKPKIVMLIFVSGKIVITGAKTREDTYAAFTNIYPVLAGF 188
>gi|302833409|ref|XP_002948268.1| TATA-box binding protein [Volvox carteri f. nagariensis]
gi|300266488|gb|EFJ50675.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 338
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G ++N+V+TVNL KLDLK+IA+ ARNAEYNPK
Sbjct: 5 VSGITPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASG 64
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAKSE S+ AAR+YA+I+QKLGFPA FK+FKIQNIVGSCDVKFPIRLEGLAY+H
Sbjct: 65 KMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAH 124
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F+SYEPELFPGLIYRMKQPKIVLLIFVSGK+V+TGAK R E Y A+ NIYP L +++K
Sbjct: 125 SLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKK 184
>gi|46128099|ref|XP_388603.1| hypothetical protein FG08427.1 [Gibberella zeae PH-1]
Length = 290
Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/183 (66%), Positives = 132/183 (72%), Gaps = 30/183 (16%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKV----------------------- 47
G +++NIV+TVNLDC+LDLK IAL ARNAEYNPKV
Sbjct: 76 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVHQTLRRFAAVIMRIREPKTTALI 135
Query: 48 -------CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGL 100
TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGL
Sbjct: 136 FASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGL 195
Query: 101 AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
A H FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL
Sbjct: 196 ASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQ 255
Query: 161 EFR 163
R
Sbjct: 256 GLR 258
>gi|349602909|gb|AEP98902.1| TATA-box-binding protein-like protein, partial [Equus caballus]
Length = 169
Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/166 (70%), Positives = 129/166 (77%), Gaps = 24/166 (14%)
Query: 23 VNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSK 58
VNL CKLDLK IAL+ARNAEYNPK VCTGAKSE+QS+
Sbjct: 2 VNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSR 61
Query: 59 LAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGL 118
LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H FSSYEPELFPGL
Sbjct: 62 LAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGL 121
Query: 119 IYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
IYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 122 IYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 167
>gi|296482511|tpg|DAA24626.1| TPA: TBP protein-like [Bos taurus]
Length = 303
Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/177 (66%), Positives = 130/177 (73%), Gaps = 24/177 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V + N+V TVNL CKLDLK IAL ARNAEYNPK VC
Sbjct: 126 VPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVC 185
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TG KSE+QS+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLE L SH F+
Sbjct: 186 TGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFA 245
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
SYEPELFPGL+YRM +P+IVLLIFVSGK+V+TGAKVR E Y AF NIY +L FRK
Sbjct: 246 SYEPELFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEIYEAFNNIYSILKGFRKT 302
>gi|449543430|gb|EMD34406.1| hypothetical protein CERSUDRAFT_97665 [Ceriporiopsis subvermispora
B]
Length = 338
Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 138/201 (68%), Gaps = 47/201 (23%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPK
Sbjct: 137 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKT 196
Query: 47 ----------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIR 96
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIR
Sbjct: 197 TALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIR 256
Query: 97 LEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV------------ 144
LEGLAYSHG FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKV
Sbjct: 257 LEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVKPGFSYREASPP 316
Query: 145 -RDETYTAFENIYPVLTEFRK 164
R+E YTAF IY VL EFRK
Sbjct: 317 SREEIYTAFNTIYTVLCEFRK 337
>gi|340371811|ref|XP_003384438.1| PREDICTED: TATA-box-binding protein-like [Amphimedon queenslandica]
Length = 291
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/180 (65%), Positives = 133/180 (73%), Gaps = 24/180 (13%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
+G + ++NIVSTV L CKLDLK IAL+ARNAEYNPK
Sbjct: 111 MGIIPQLQNIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMRIRDPRTTALVFSSGK 170
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAKSE S+LAARKYARIIQKLGFPAKF +FKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 171 MVCTGAKSEDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCDVKFPIRLEGLVVAHS 230
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R + AF NIYP+L F+K
Sbjct: 231 QFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKERSQIIEAFNNIYPILKNFKKT 290
>gi|330846314|ref|XP_003294984.1| TATA-binding protein [Dictyostelium purpureum]
gi|325074431|gb|EGC28489.1| TATA-binding protein [Dictyostelium purpureum]
Length = 224
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 135/178 (75%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVN+ +LDLK IAL ARNAEYNPK
Sbjct: 40 GIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKM 99
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SK AARKYARIIQKL FPA+F DFKIQNIVGSCDVKFPI+LE L +H +
Sbjct: 100 VCTGAKSEDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTS 159
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F++YEPE+FPGLIY+M QPK+VLLIFVSGKIV+TGAKVR+E Y AFENIYPVLT F+K
Sbjct: 160 FTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTAFKK 217
>gi|300701392|ref|XP_002994966.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
gi|239603310|gb|EEQ81295.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
Length = 199
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++N+V+TVNL+CKLDLK IAL+ARNAEYNPK
Sbjct: 21 GITPILQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKV 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+QSKLAA++Y++II KLGF A F DFKIQNIV SCD KF IRLEGLAYSH
Sbjct: 81 VITGAKSEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRLEGLAYSHSN 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AFENIYPVLT+++K
Sbjct: 141 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFENIYPVLTQYKKT 199
>gi|328870425|gb|EGG18799.1| TATA-binding protein [Dictyostelium fasciculatum]
Length = 236
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 134/180 (74%), Gaps = 24/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVN+ +L+LK IAL A NAEYNPK
Sbjct: 46 GIVPVLQNIVSTVNMGTELNLKTIALGALNAEYNPKRFAAVIMRIRDPKTTALIFKSGKM 105
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARIIQKL FPA FKDFKIQNIVGSCDVKFPIRLE L +H
Sbjct: 106 VCTGAKSEEASKLAARKYARIIQKLDFPAIFKDFKIQNIVGSCDVKFPIRLENLNNAHKV 165
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
F++YEPE+FPGLIY+M QPK+VLLIFVSGKIV+TGAKVR+E Y AFENIYPVL FRK Q
Sbjct: 166 FTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLNSFRKPQ 225
>gi|44969211|gb|AAS49602.1| TATA box-binding protein [Scyliorhinus canicula]
Length = 253
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/167 (68%), Positives = 129/167 (77%), Gaps = 24/167 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 87 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 146
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGA+SE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 147 VCTGARSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 206
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFE
Sbjct: 207 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFE 253
>gi|449278063|gb|EMC86030.1| TATA-box-binding protein [Columba livia]
Length = 301
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/179 (66%), Positives = 132/179 (73%), Gaps = 26/179 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 124 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 183
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEG
Sbjct: 184 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGXXXXKKM 243
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
YEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 244 L--YEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 300
>gi|66819952|ref|XP_643633.1| TATA-binding protein [Dictyostelium discoideum AX4]
gi|166210407|sp|P26355.2|TBP_DICDI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|60471603|gb|EAL69559.1| TATA-binding protein [Dictyostelium discoideum AX4]
Length = 205
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/180 (64%), Positives = 136/180 (75%), Gaps = 24/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVN+ +LDLK IAL ARNAEYNPK
Sbjct: 22 GIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKM 81
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+ AARKYARIIQKL FPA+F DFKIQNIVGSCDVKFPI+LE L +H +
Sbjct: 82 VCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTS 141
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
F++YEPE+FPGLIY+M QPK+VLLIFVSGKIV+TGAKVR+E Y AFENIYPVL+ F+KV
Sbjct: 142 FTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLSAFKKVN 201
>gi|429964398|gb|ELA46396.1| TATA-box-binding protein [Vavraia culicis 'floridensis']
Length = 201
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 133/175 (76%), Gaps = 24/175 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V+TVNL+C+L+LK IAL+ARNAEYNPK V TG
Sbjct: 27 TLQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITG 86
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSEQ S++AA+KYARII KLGF +F DFKIQNIV SCD KF IRLEGLAY+H F SY
Sbjct: 87 AKSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSY 146
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
EPELFPGLIYRM PKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVLT++RK
Sbjct: 147 EPELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTKYRKT 201
>gi|198427023|ref|XP_002127120.1| PREDICTED: similar to TATA-box binding protein [Ciona intestinalis]
Length = 356
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 131/174 (75%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNLD KLDLK+IAL ARNAEYNPK VCTGA
Sbjct: 182 LQNIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 241
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE S+LAARKYAR++QKLGFPAKF DFKIQN+VGS DVKFPIRLEGL +H FSSYE
Sbjct: 242 KSENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPIRLEGLVLAHSQFSSYE 301
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAKV +E AF NIYP+L +RK
Sbjct: 302 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVYNEIEEAFNNIYPILKGYRKT 355
>gi|440494309|gb|ELQ76708.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Trachipleistophora hominis]
Length = 234
Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 133/175 (76%), Gaps = 24/175 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V+TVNL+C+L+LK IAL+ARNAEYNPK V TG
Sbjct: 60 TLQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITG 119
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSEQ S++AA+KYARII KLGF +F DFKIQNIV SCD KF IRLEGLAY+H F SY
Sbjct: 120 AKSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSY 179
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
EPELFPGLIYRM PKIVLLIFVSGKIV+TGAKVRDE Y AFENIYPVLT++RK
Sbjct: 180 EPELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTKYRKT 234
>gi|302508189|ref|XP_003016055.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
gi|291179624|gb|EFE35410.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
Length = 295
Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 134/200 (67%), Gaps = 48/200 (24%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKV--------------------- 47
+ G V +++NIV+TVNLDC+LDLK IAL ARNAEYNPKV
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVGAGEVACLLFSFHTQVKIYIL 136
Query: 48 ---------------------------CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDF 80
TGAKSE SKLA+RKYARIIQKLGF AKF DF
Sbjct: 137 FVRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDF 196
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KIQNIVGSCD+KFPIRLEGLA H FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+T
Sbjct: 197 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 256
Query: 141 GAKVRDETYTAFENIYPVLT 160
GAKVR+E Y AFE IYPVLT
Sbjct: 257 GAKVREEIYQAFEMIYPVLT 276
>gi|307109595|gb|EFN57833.1| hypothetical protein CHLNCDRAFT_20778 [Chlorella variabilis]
Length = 209
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 133/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+V+TVNL+CKLDLK IAL ARNAEYNPK
Sbjct: 26 GIVPQLQNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIREPKSTALIFHSGKM 85
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTG KSEQ++++A+RKYA+I+QKL + FK+FKIQN+VGSCDVKFPIRLEGLA +H
Sbjct: 86 VCTGTKSEQEARIASRKYAKILQKLQYSVSFKEFKIQNMVGSCDVKFPIRLEGLASTHAV 145
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F SYEPELFPGLIYRM PKIVLLIFVSGK+V+TGAK R++ Y AFENIYPVL FRK
Sbjct: 146 FCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLTGAKKREDIYRAFENIYPVLQTFRK 203
>gi|308809792|ref|XP_003082205.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
gi|116060673|emb|CAL57151.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
Length = 258
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 134/196 (68%), Gaps = 45/196 (22%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPKV----------------------------- 47
+NIV+TVNLDCKLDLK IA ARN EYNPKV
Sbjct: 50 RNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAAIMRI 109
Query: 48 ----------------CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDV 91
CTGAK+E ++ AARKYA++I KLGFPA+FKDFKIQN+VGSCDV
Sbjct: 110 RNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDV 169
Query: 92 KFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+FPIRLEGLA+ HG F+ YEPELFPGLIYRM+ PKIVLLIFVSGKIV+TG K R++ Y A
Sbjct: 170 QFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQA 229
Query: 152 FENIYPVLTEFRKVQQ 167
FENIYPVLTEF+K+ Q
Sbjct: 230 FENIYPVLTEFKKLAQ 245
>gi|403278005|ref|XP_003930626.1| PREDICTED: TATA box-binding protein-like protein 2 [Saimiri
boliviensis boliviensis]
Length = 381
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 132/182 (72%), Gaps = 27/182 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKVCT--------------------- 49
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK+C
Sbjct: 200 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYDYQPNLPCVKPLR 259
Query: 50 ------GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
A E+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDVKFPIRLEGL +
Sbjct: 260 SFTSPGSANCEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLT 319
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E AFENIYP+L F+
Sbjct: 320 HQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILKSFK 379
Query: 164 KV 165
K
Sbjct: 380 KA 381
>gi|6063008|gb|AAF03091.1|AF144035_1 transcription initiation factor TFIID [Antonospora locustae]
Length = 259
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/175 (65%), Positives = 135/175 (77%), Gaps = 24/175 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V+TVNL+CKLDLK IAL+ARNAEYNPK V TG
Sbjct: 85 ALQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTG 144
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSEQ SKLAA+K++RII KLGF KF DFKIQNIV SCD +F IRLEGLA++H F SY
Sbjct: 145 AKSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSNFCSY 204
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
EPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK+RDE Y AF+NIYPVLT+++K+
Sbjct: 205 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEIYEAFDNIYPVLTQYKKI 259
>gi|396081293|gb|AFN82911.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL+CKLDLK IAL+ARNAEYNPK
Sbjct: 20 GIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ SK+AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 80 VITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL +++K
Sbjct: 140 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQYKKT 198
>gi|401826152|ref|XP_003887170.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998328|gb|AFM98189.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 135/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL+CKLDLK IAL+ARNAEYNPK
Sbjct: 20 GIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ SK+AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 80 VITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL +++K
Sbjct: 140 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQYKKT 198
>gi|148676212|gb|EDL08159.1| TBP-related factor 3 [Mus musculus]
Length = 208
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 30 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKV 89
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE++S+LAARKYAR++QKLGFP +F +FKIQN+VGSCDVKFPIRLE LA +H
Sbjct: 90 VCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQ 149
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+KV
Sbjct: 150 FSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV 208
>gi|72679753|gb|AAI00306.1| TATA box binding protein like 2 [Mus musculus]
gi|148910845|tpg|DAA06033.1| TPA_inf: TATA box binding protein-like 2 [Mus musculus]
gi|219520477|gb|AAI44905.1| Tbpl2 protein [Mus musculus]
Length = 349
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 171 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKV 230
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE++S+LAARKYAR++QKLGFP +F +FKIQN+VGSCDVKFPIRLE LA +H
Sbjct: 231 VCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQ 290
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+KV
Sbjct: 291 FSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV 349
>gi|303389118|ref|XP_003072792.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
gi|303301934|gb|ADM11432.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 134/179 (74%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL+CKLDLK IAL+ARNAEYNPK
Sbjct: 20 GIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ S++AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 80 VITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL + RK
Sbjct: 140 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYRAFNNIYPVLIQHRKT 198
>gi|358335036|dbj|GAA53489.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 436
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/173 (66%), Positives = 132/173 (76%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV TV L CKL+LK+IAL ARNAEYNPK VCTGA
Sbjct: 247 LQNIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 306
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE++++LAARKYARIIQKLGF A FK+FKIQN+VGSCDV+F IRLEGL + G F++YE
Sbjct: 307 KSEERARLAARKYARIIQKLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLAQGQFATYE 366
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRDE Y AF NIYP+L FRK
Sbjct: 367 PELFPGLIYRMTKPKIVLLIFVSGKIVLTGAKVRDEIYEAFRNIYPILKNFRK 419
>gi|44967798|gb|AAS49578.1| TATA box binding protein (TBP)-associated factor [Protopterus
dolloi]
Length = 250
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/163 (69%), Positives = 126/163 (77%), Gaps = 24/163 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 88 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 147
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 148 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 207
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 149
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y
Sbjct: 208 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIY 250
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 92 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 150
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 151 GAKSEEQSRLA 161
>gi|19074223|ref|NP_584829.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|19068865|emb|CAD25333.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|449329027|gb|AGE95302.1| transcription initiation factor tfIId [Encephalitozoon cuniculi]
Length = 198
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 133/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 20 GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ S++AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 80 VITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 139
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL + RK
Sbjct: 140 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 197
>gi|339961266|pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961267|pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961268|pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
gi|339961269|pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 133/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 40 GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 99
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ S++AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 100 VITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 159
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL + RK
Sbjct: 160 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
>gi|259090139|pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
gi|259090140|pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 133/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++N+V+TVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 40 GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 99
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ S++AA++YA+II KLGF A F DFKIQNIV SCD+KF IRLEGLAY+H
Sbjct: 100 VITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN 159
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVRD+ Y AF NIYPVL + RK
Sbjct: 160 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
>gi|424513557|emb|CCO66179.1| predicted protein [Bathycoccus prasinos]
Length = 289
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 139/213 (65%), Gaps = 57/213 (26%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEY--------------------------- 43
G V +++NIV+TVNLDCKLDLK IA ARN EY
Sbjct: 45 GIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKEIVKTDAFLHHSFHQT 104
Query: 44 -------------------NPK-----------VCTGAKSEQQSKLAARKYARIIQKLGF 73
NPK VCTGAK+E ++ AARKYA++I KLGF
Sbjct: 105 FRCALLNKQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAREAARKYAKVIIKLGF 164
Query: 74 PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFV 133
PA+FKDFKIQN+VGSCDVKFPIRLEGLA+SHG F+ YEPELFPGLIYRM+ PKIVLLIFV
Sbjct: 165 PAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLLIFV 224
Query: 134 SGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
SGKIV+TG K R++ Y AFENIYPVLTEF+K+Q
Sbjct: 225 SGKIVLTGGKRREDIYQAFENIYPVLTEFKKLQ 257
>gi|256089271|ref|XP_002580736.1| TATA-box binding protein [Schistosoma mansoni]
gi|350646100|emb|CCD59202.1| TATA-box binding protein, putative [Schistosoma mansoni]
Length = 271
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 132/176 (75%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++NIV TV L CKL+LK IAL ARNAEYNPK VC
Sbjct: 77 VPQLQNIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 136
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+Q++LAARKYARIIQ+LGF A FK+FKIQN+VGSCDV+F IRLEGL S G F+
Sbjct: 137 TGAKSEEQARLAARKYARIIQRLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLSQGQFA 196
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPELFPGLIYRM +PKIVLL+FVSGKIV+TGAKVR+E Y AF NIYP+L F+K
Sbjct: 197 TYEPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKVREEIYEAFNNIYPILKNFKK 252
>gi|290994623|ref|XP_002679931.1| TATA-box binding protein [Naegleria gruberi]
gi|284093550|gb|EFC47187.1| TATA-box binding protein [Naegleria gruberi]
Length = 318
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 132/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++N+VSTVNL C+L LK IAL ARNAEYNPK
Sbjct: 130 GIIPVIQNVVSTVNLACELKLKMIALHARNAEYNPKRFAAVIMRIREPKTTALIFQSGKM 189
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE++S+LAARKYARIIQKLGF AKF +FKIQNIVGSCDV FP+RLEGL H +
Sbjct: 190 VVTGAKSEEESRLAARKYARIIQKLGFNAKFTEFKIQNIVGSCDVGFPVRLEGLNCQHHS 249
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
++SYEPE+FPGLIYRM PK+VLLIFVSGKIV+TGAK RD Y AF+NIYPVL +F+K
Sbjct: 250 YASYEPEIFPGLIYRMVDPKVVLLIFVSGKIVLTGAKHRDTIYQAFQNIYPVLRDFKK 307
>gi|413933837|gb|AFW68388.1| hypothetical protein ZEAMMB73_647229, partial [Zea mays]
Length = 189
Score = 228 bits (580), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 136/178 (76%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIVSTVNLDCK+DL+ +A ARNAEYNP+
Sbjct: 12 GIVPNLQNIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALIFATGKM 71
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+LAARK+ARI+QKLGFPA+FKDFK+QNIVGSCD+KFPIRLEGLA + G
Sbjct: 72 VCTGAKSEADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGLALASGL 131
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
++YEPE+FPGL+YRM PK+V+L+FVSGKIV+TGAKV++E AFE I+P+L +FRK
Sbjct: 132 SATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVQEEICAAFEKIHPMLVQFRK 189
>gi|150247085|ref|NP_001092831.1| TATA box-binding protein-like protein 2 [Rattus norvegicus]
gi|166987367|sp|A6H909.1|TBPL2_RAT RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910847|tpg|DAA06034.1| TPA_inf: TATA box binding protein-like 2 [Rattus norvegicus]
Length = 344
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/179 (61%), Positives = 132/179 (73%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 166 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKV 225
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE +S+LAARKYAR++QKLGFP +F +FKIQN+V SCDVKFPIRLE LA +H
Sbjct: 226 VCTGAKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQ 285
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+KV
Sbjct: 286 FSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV 344
>gi|149039452|gb|EDL93672.1| rCG45623 [Rattus norvegicus]
Length = 190
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/179 (61%), Positives = 132/179 (73%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 12 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKV 71
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE +S+LAARKYAR++QKLGFP +F +FKIQN+V SCDVKFPIRLE LA +H
Sbjct: 72 VCTGAKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQ 131
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+KV
Sbjct: 132 FSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV 190
>gi|429962646|gb|ELA42190.1| TATA-box-binding protein [Vittaforma corneae ATCC 50505]
Length = 197
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 136/179 (75%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++N+V+TVNL+CKLDL+ IAL+ARNAEYNPK
Sbjct: 19 GITPVLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 78
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE+ SK+A+++YA+II KLGF A+F DFKIQNIV SCD+KF I+LEGLAY+H
Sbjct: 79 VVTGAKSEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSN 138
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR++ Y AF+NIYPVLT++RK
Sbjct: 139 FCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRKT 197
>gi|39979630|ref|NP_951014.1| TATA box-binding protein-like protein 2 [Mus musculus]
gi|81870779|sp|Q6SJ95.1|TBPL2_MOUSE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569211|gb|AAR24282.1| TBP-related factor 3 [Mus musculus]
gi|111600530|gb|AAI19161.1| TATA box binding protein like 2 [Mus musculus]
Length = 350
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 111/180 (61%), Positives = 134/180 (74%), Gaps = 25/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 171 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKV 230
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE++S+LAARKYAR++QKLGFP +F +FKIQN+VGSCDVKFPIRLE LA +H
Sbjct: 231 VCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQ 290
Query: 107 F-SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+KV
Sbjct: 291 FSSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV 350
>gi|167899|gb|AAA33256.1| TFIID [Dictyostelium discoideum]
Length = 205
Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 134/180 (74%), Gaps = 24/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIVSTVN+ +L LK IAL ARNAEYNPK
Sbjct: 22 GIIPTLQNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKM 81
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE S+ AARKYARIIQKL FPA+F DFKIQNIVGSCDVKFPI+LE L +H +
Sbjct: 82 VCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTS 141
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
F++YEPE+FPGLIY+M QPK++LLIFVSGKIV+TGAKVR+ Y AFENIYPVL+ F+KV
Sbjct: 142 FTNYEPEIFPGLIYKMIQPKVLLLIFVSGKIVLTGAKVREYIYEAFENIYPVLSAFKKVN 201
>gi|354503979|ref|XP_003514057.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cricetulus
griseus]
Length = 350
Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/180 (61%), Positives = 133/180 (73%), Gaps = 25/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++N+VST NL CKLDL+KIAL A+N EYNPK
Sbjct: 171 GIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALLFSSGKV 230
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE++S+LAARKYAR++QKLGFP KF +FKIQN+VGSCDVKFPIRLE LA +H
Sbjct: 231 VCTGAKSEEESRLAARKYARVVQKLGFPVKFFNFKIQNMVGSCDVKFPIRLEILALTHRQ 290
Query: 107 F-SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F SSYEPELFPGLIY+M +P++VLLIF SGK+V+TGAK R E Y AFEN+YP+L F+K
Sbjct: 291 FSSSYEPELFPGLIYKMVRPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKT 350
>gi|339251280|ref|XP_003373123.1| TATA-box-binding protein [Trichinella spiralis]
gi|316968993|gb|EFV53163.1| TATA-box-binding protein [Trichinella spiralis]
Length = 260
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/176 (63%), Positives = 130/176 (73%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++NIVSTVNL CKLDLK+IALQARNAEYNPK VC
Sbjct: 84 VPQLQNIVSTVNLGCKLDLKQIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 143
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE S+LAARKYARI+QKLGF AKF DFK+QN+VGSCDV+FPI+LE +H FS
Sbjct: 144 TGAKSEDLSRLAARKYARIVQKLGFDAKFMDFKVQNMVGSCDVRFPIQLESFCLTHSQFS 203
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF +IYP+L FRK
Sbjct: 204 AYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKEKRDIDEAFTSIYPILKSFRK 259
>gi|260830471|ref|XP_002610184.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
gi|229295548|gb|EEN66194.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
Length = 320
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/169 (65%), Positives = 126/169 (74%), Gaps = 24/169 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 152 GIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKM 211
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 212 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQ 271
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGA+ ET + ++
Sbjct: 272 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAQACAETLGEWHSL 320
>gi|297478910|ref|XP_002690449.1| PREDICTED: TATA-box-binding protein, partial [Bos taurus]
gi|296483816|tpg|DAA25931.1| TPA: TATA box binding protein-like [Bos taurus]
Length = 227
Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/162 (69%), Positives = 127/162 (78%), Gaps = 25/162 (15%)
Query: 11 GAV-SSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
GAV ++ +NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 66 GAVHNTTENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 125
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 126 MVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQ 185
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E
Sbjct: 186 QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAE 227
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 83 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
+NIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V TGA
Sbjct: 73 ENIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 131
Query: 143 KVRDETYTA 151
K +++ A
Sbjct: 132 KSEEQSRLA 140
>gi|44967740|gb|AAS49577.1| TATA box binding protein (TBP)-associated factor [Latimeria
chalumnae]
Length = 249
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/163 (68%), Positives = 124/163 (76%), Gaps = 24/163 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 87 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 146
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 147 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 206
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 149
SSYEPELFPGLIYRM +P+IVLL FVSGK+V+TGAKVR E Y
Sbjct: 207 SSSYEPELFPGLIYRMIKPRIVLLXFVSGKVVLTGAKVRAEIY 249
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 91 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 149
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 150 GAKSEEQSRLA 160
>gi|255579166|ref|XP_002530430.1| TATA-box binding protein, putative [Ricinus communis]
gi|223530038|gb|EEF31961.1| TATA-box binding protein, putative [Ricinus communis]
Length = 193
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/174 (61%), Positives = 131/174 (75%), Gaps = 25/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NI STVNLDCKLDLK+IAL + N+EY+PK VCTGA
Sbjct: 20 LQNIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCTGA 79
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSY 110
K+E+ SKLA RK+ARI+QKLGFPAKFKDFKIQNIV SCD+KFP+RLE Y+ H AFS Y
Sbjct: 80 KTEEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFSRY 139
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EP++FPGLIYRMK+ +I++LIFVSGK+VITGAK DE + AF+NIYPVL F++
Sbjct: 140 EPDVFPGLIYRMKESRIIMLIFVSGKVVITGAKKTDEAFAAFDNIYPVLAGFKR 193
>gi|324518621|gb|ADY47156.1| TATA-box-binding protein, partial [Ascaris suum]
Length = 384
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 129/174 (74%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVSTVNL LDLKKIAL ARNAEYNPK VCTG
Sbjct: 211 ALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 270
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE+ S+LAARKYARI+QKLGF AKF +FK+QN+VGSCDV+FPI+LEGL +H FS+Y
Sbjct: 271 AKSEEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTY 330
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 331 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKFKKDIDDAFNQIYPILKGFKK 384
>gi|395843435|ref|XP_003794490.1| PREDICTED: TATA box-binding protein-like protein 2 [Otolemur
garnettii]
Length = 364
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 131/178 (73%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV T+NL CKLDL++IAL+A+N EYNP+
Sbjct: 186 GIVPELQNIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKI 245
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARK+AR++QKLGFPA+F DFKI N+VGSCDV FPIRLEGL +H
Sbjct: 246 VCTGAKSEEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGFPIRLEGLVLAHQQ 305
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F SYEPELFPGLIYRM +P++V+LIFVSGK+V+ GAK R E Y AFENIY +L F+K
Sbjct: 306 FCSYEPELFPGLIYRMVKPRVVVLIFVSGKVVLAGAKKRSEIYEAFENIYSILKVFKK 363
>gi|309252549|gb|ADO60139.1| TATA-binding protein, partial [Beauveria bassiana]
Length = 159
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 120/159 (75%), Gaps = 24/159 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
NIV+TVNLDC+LDLK IAL ARNAEYNPK V TGAKS
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H FSSYEPE
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAF 152
LFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y A
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAL 159
>gi|312069027|ref|XP_003137490.1| TATA-box binding protein [Loa loa]
gi|307767348|gb|EFO26582.1| TATA-box binding protein [Loa loa]
Length = 369
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 129/174 (74%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVSTVNL LDLKKIAL ARNAEYNPK VCTG
Sbjct: 196 ALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 255
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE+ S+LAARKYARI+QKLGF AKF +FK+QN+VGSCDV+FPI+LEGL +H FS+Y
Sbjct: 256 AKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTY 315
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 316 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 369
>gi|341900545|gb|EGT56480.1| CBN-TBP-1 protein [Caenorhabditis brenneri]
Length = 337
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIVSTVNL +LDLKKIAL ARNAEYNPK VC
Sbjct: 162 MPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 221
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+ S+LAARKYARI+QKLGF AKF +F +QN+VGSCDV+FPI+LEGL +H FS
Sbjct: 222 TGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFS 281
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 282 TYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 337
>gi|170591981|ref|XP_001900748.1| TATA-box binding protein [Brugia malayi]
gi|158591900|gb|EDP30503.1| TATA-box binding protein, putative [Brugia malayi]
Length = 347
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 129/174 (74%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVSTVNL LDLKKIAL ARNAEYNPK VCTG
Sbjct: 174 ALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 233
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE+ S+LAARKYARI+QKLGF AKF +FK+QN+VGSCDV+FPI+LEGL +H FS+Y
Sbjct: 234 AKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTY 293
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 294 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 347
>gi|402470285|gb|EJW04618.1| TATA-box-binding protein [Edhazardia aedis USNM 41457]
Length = 198
Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 127/174 (72%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V+TVNL L L+ IA + RNAEYNPK V TGA
Sbjct: 25 IQNVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVVTGA 84
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE S AARK+ARIIQK GFPAKFKD+KIQNIV SCD+KF +RLEGLA+ HG + SYE
Sbjct: 85 KSEASSMFAARKFARIIQKAGFPAKFKDYKIQNIVSSCDIKFNVRLEGLAFMHGPYCSYE 144
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIYRM +PKIVLLIFVSGKIVITGAK R+E Y AFE+IYPVLT+ RKV
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKIVITGAKAREEIYQAFESIYPVLTQHRKV 198
>gi|387592277|gb|EIJ87301.1| TATA-box binding protein [Nematocida parisii ERTm3]
gi|387596323|gb|EIJ93945.1| TATA-box binding protein [Nematocida parisii ERTm1]
Length = 189
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 132/178 (74%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL C+LDLK IAL ARNAEYNPK
Sbjct: 11 GLVPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKM 70
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGA+SE+ SK+AA+KY+ II++LG+P +F +FKIQNIV SCD KF IRLEGL + H
Sbjct: 71 VVTGARSEEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSN 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+SSYEPELFPGLIYRM +PKIVLL+FVSGK+V+TGAK R+E Y AFENIYPVL ++RK
Sbjct: 131 YSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKHREEIYQAFENIYPVLKQYRK 188
>gi|268575218|ref|XP_002642588.1| C. briggsae CBR-TBP-1 protein [Caenorhabditis briggsae]
Length = 337
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 129/176 (73%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIVSTVNL LDLKKIAL ARNAEYNPK VC
Sbjct: 162 MPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 221
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+ S+LAARKYARI+QKLGF AKF +F +QN+VGSCDV+FPI+LEGL +H FS
Sbjct: 222 TGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFS 281
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 282 TYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 337
>gi|308467285|ref|XP_003095891.1| CRE-TBP-1 protein [Caenorhabditis remanei]
gi|308244262|gb|EFO88214.1| CRE-TBP-1 protein [Caenorhabditis remanei]
Length = 338
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 129/176 (73%), Gaps = 24/176 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIVSTVNL LDLKKIAL ARNAEYNPK VC
Sbjct: 163 MPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 222
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKSE+ S+LAARKYARI+QKLGF AKF +F +QN+VGSCDV+FPI+LEGL +H FS
Sbjct: 223 TGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFS 282
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 283 TYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 338
>gi|169806112|ref|XP_001827801.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
gi|161779087|gb|EDQ31113.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
Length = 233
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 132/174 (75%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V+TVNL+CKLDLK IAL ARNAEYNPK V TGA
Sbjct: 60 LQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ S++A+++Y++IIQKLGF F F +QNIV SCD+KFPI+LEGLAY+H + SYE
Sbjct: 120 KSEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYE 179
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIYRM +PKIVLLIFVSGKIV+TGAK R++ + AFENIYPVLT++RK+
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRKI 233
>gi|17555358|ref|NP_498635.1| Protein TBP-1 [Caenorhabditis elegans]
gi|417896|sp|P32085.1|TBP_CAEEL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|12275988|gb|AAG50207.1|AF303249_1 transcription factor TFIID [Caenorhabditis elegans]
gi|156448|gb|AAA03582.1| TATA-box binding protein [Caenorhabditis elegans]
gi|351061293|emb|CCD69071.1| Protein TBP-1 [Caenorhabditis elegans]
Length = 340
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/174 (61%), Positives = 129/174 (74%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVSTVNL +LDLKKIAL ARNAEYNPK VCTG
Sbjct: 167 ALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 226
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE+ S+LAARKYARI+QKLGF AKF +F +QN+VGSCDV+FPI+LEGL +H FS+Y
Sbjct: 227 AKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTY 286
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 287 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDIDEAFGQIYPILKGFKK 340
>gi|440902256|gb|ELR53068.1| TATA-box-binding protein, partial [Bos grunniens mutus]
Length = 247
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/161 (67%), Positives = 120/161 (74%), Gaps = 24/161 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V + N+V TVNL CKLDLK IAL ARNAEYNPK VC
Sbjct: 87 VPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVC 146
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TG KSE+QS+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLE L SH F+
Sbjct: 147 TGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFA 206
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 149
SYEPELFPGL+YRM +P+IVLLIFVSGK+V+TGAKVR E Y
Sbjct: 207 SYEPELFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEIY 247
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++ N+V + ++ + L+ +A + Y P+ F +I R+++P+ L+F SGK+V T
Sbjct: 89 QLHNVVCTVNLGCKLDLKSIAL-LARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCT 147
Query: 141 GAKVRDETYTA 151
G K +++ A
Sbjct: 148 GGKSEEQSRLA 158
>gi|14423952|sp|Q9NHP5.1|TBP_DROVI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding protein [Drosophila virilis]
Length = 349
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 127/178 (71%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL ARNAEYNPK
Sbjct: 170 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKM 229
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAK E S+LAARKYARIIQKLGF AKF D KIQN+VG CDVKFPIRLEGL +H
Sbjct: 230 VCTGAKGEDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVGLCDVKFPIRLEGLVLTHCN 289
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FS YEPELFPGLIYRM +P+IVLL+ GK+V+TGAKVR E Y AF+ I+ +L +F+K
Sbjct: 290 FSRYEPELFPGLIYRMVRPRIVLLLPAPGKVVLTGAKVRQEIYDAFDKIFSILKKFKK 347
>gi|443925999|gb|ELU44748.1| transcription initiation factor TFIID-1 [Rhizoctonia solani AG-1
IA]
Length = 985
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/150 (72%), Positives = 117/150 (78%), Gaps = 24/150 (16%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
NIV+TVNLDC+LDLK IAL ARNAEYNPK V TGAKS
Sbjct: 73 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 132
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG FSSYEPE
Sbjct: 133 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 192
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
LFPGLIYRM +PK+VLLIFVSGKIV+TGAK
Sbjct: 193 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAK 222
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 84 NIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
NIV + ++ + L+ +A H + Y P+ F +I R++ PK LIF SGK+V+TGAK
Sbjct: 73 NIVATVNLDCRLDLKTIAL-HARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 131
Query: 144 VRDETYTA 151
D++ A
Sbjct: 132 SEDDSRLA 139
>gi|428176634|gb|EKX45518.1| hypothetical protein GUITHDRAFT_152740 [Guillardia theta CCMP2712]
Length = 212
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 129/180 (71%), Gaps = 24/180 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G S++NIV+TVNL+C L+LK I LQARNAEYNPK
Sbjct: 25 GITPSLQNIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 84
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ ++LA+RK+ARIIQKLGF AKF +FKIQNIVGSCDV+FPIRLE LAY+H
Sbjct: 85 VCTGAKSEESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRLEKLAYAHQN 144
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
+ SYEPELFPGLIYRM PK+VLLIFVSGKIV+TGAK + + AF IY L EF+ V
Sbjct: 145 YCSYEPELFPGLIYRMLVPKVVLLIFVSGKIVLTGAKNKRDIDIAFRTIYHTLHEFKNVS 204
>gi|18483230|gb|AAL73974.1|AF466201_3 TATA-binding protein [Sorghum bicolor]
Length = 203
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/152 (74%), Positives = 122/152 (80%), Gaps = 7/152 (4%)
Query: 8 LILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----VCTGAKSEQQSKL---A 60
+IL +NIVSTVNLDCKLDLK IALQARNAEYNPK V + + + L +
Sbjct: 52 VILSPRVDFRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 111
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIY 120
+ YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIY
Sbjct: 112 GKMYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIY 171
Query: 121 RMKQPKIVLLIFVSGKIVITGAKVRDETYTAF 152
RMKQPKIVLLIFVSGKIV+TGAK+ T F
Sbjct: 172 RMKQPKIVLLIFVSGKIVLTGAKMTQVKVTFF 203
>gi|294034|gb|AAA16924.1| TATA box-binding protein, partial [Onchocerca volvulus]
Length = 179
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 129/174 (74%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVSTVNL LDLKKIAL ARNAEYNPK VCTG
Sbjct: 6 ALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 65
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE+ S+LAARKYARI+QKLGF AKF +FK+QN+VGSCDV+FPI+LEGL +H FS+Y
Sbjct: 66 AKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTY 125
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 126 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 179
>gi|414864598|tpg|DAA43155.1| TPA: hypothetical protein ZEAMMB73_034825 [Zea mays]
Length = 212
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 134/199 (67%), Gaps = 45/199 (22%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKVC---------------------- 48
G V ++NIVSTVNL+CK+DL+ +A ARNAEYNP+VC
Sbjct: 12 GIVPILQNIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAWNYIRFA 71
Query: 49 -----------------------TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNI 85
TGAKSE S+LAARK+ARI+QKLG PA+FKDFK+QNI
Sbjct: 72 AAIMRIREPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKDFKVQNI 131
Query: 86 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145
VGSCD+KFPIRLEGLA + G ++YEPE+FPGL+YRM PK+V+L+FVSGKIV+TGAKVR
Sbjct: 132 VGSCDLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVR 191
Query: 146 DETYTAFENIYPVLTEFRK 164
+E AFE I+P+L +FRK
Sbjct: 192 EEICAAFEKIHPMLVQFRK 210
>gi|405952231|gb|EKC20068.1| TATA-box-binding protein [Crassostrea gigas]
Length = 452
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 124/170 (72%), Gaps = 29/170 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV TVNL CKLDLKKIAL ARNAEYNPK VCTGA
Sbjct: 99 LQNIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 158
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE Q+KLAARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSYE
Sbjct: 159 KSEDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 218
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAK-----VRDETYTAFENIY 156
PELFPGLIYRM +P+IVLLIFVSGK+V+TGAK +R E N+Y
Sbjct: 219 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKDWEYAMRREMQEIVPNLY 268
>gi|164656154|ref|XP_001729205.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
gi|159103095|gb|EDP41991.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
Length = 257
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 121/157 (77%), Gaps = 24/157 (15%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V +++NIV+TVNL+ +LDLK IAL ARNAEYNPK
Sbjct: 72 GIVPTLQNIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 131
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARIIQKLGF A+F +FKIQNIVGSCDV+FPIRLEGLAYSHG
Sbjct: 132 VITGAKSEDDSRLASRKYARIIQKLGFEARFSEFKIQNIVGSCDVRFPIRLEGLAYSHGV 191
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
+SSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAK
Sbjct: 192 YSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAK 228
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QNIV + +++ + L+ +A H + Y P+ F +I R+++PK LIF SGK+VITG
Sbjct: 77 LQNIVATVNLEARLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITG 135
Query: 142 AKVRDETYTA 151
AK D++ A
Sbjct: 136 AKSEDDSRLA 145
>gi|378401306|emb|CBK13156.1| TATA binding protein, partial [Oreochromis mossambicus]
Length = 247
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 118/153 (77%), Gaps = 24/153 (15%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEY+PK
Sbjct: 95 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKM 154
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VG+CDVKFPIRLEGL +H
Sbjct: 155 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGNCDVKFPIRLEGLVLTHQQ 214
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+
Sbjct: 215 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVL 247
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y+P+ F +I R+++P+ LIF SGK+V T
Sbjct: 99 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCT 157
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 158 GAKSEEQSRLA 168
>gi|196001097|ref|XP_002110416.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
gi|190586367|gb|EDV26420.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
Length = 220
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 125/179 (69%), Gaps = 24/179 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++N+VST NL C L L+ IA +ARNAEYNPK VC
Sbjct: 32 VPQIQNVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKIVC 91
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
GAKS + S+LAARK+ARIIQKLG+PAKF F+IQNIVGSCDVKF I LEGL +H F
Sbjct: 92 AGAKSPELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSHFC 151
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
SYEPELFPGLIYRM QPK+VLL+FVSGKIV+TGAKV ++ AF+ IYP+L F K Q+
Sbjct: 152 SYEPELFPGLIYRMVQPKVVLLVFVSGKIVLTGAKVEEDILEAFKKIYPMLRAFMKPQK 210
>gi|402588148|gb|EJW82082.1| TATA box binding protein [Wuchereria bancrofti]
Length = 198
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 127/178 (71%), Gaps = 28/178 (15%)
Query: 15 SVKNIVSTVNLD----CKLDLKKIALQARNAEYNPK------------------------ 46
+++NIVSTVNL C +KIAL ARNAEYNPK
Sbjct: 21 ALQNIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 80
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ S+LAARKYARI+QKLGF AKF +FK+QN+VGSCDV+FPI+LEGL +H
Sbjct: 81 VCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQ 140
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FS+YEPELFPGLIYRM +P++VLLIFVSGK+VITGAK + + AF IYP+L F+K
Sbjct: 141 FSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 198
>gi|331213275|ref|XP_003319319.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309298309|gb|EFP74900.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 209
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 117/154 (75%), Gaps = 24/154 (15%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G V +++NIV+TVNL+C+LDLK IAL ARNAEYNPK
Sbjct: 56 VQGIVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 115
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKSE S+LAARKYARI+QKLGF AKF +FKIQNIVGSCDV+FPIRLEGLAY+H
Sbjct: 116 KMVVTGAKSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAYNH 175
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
G FSSYEPELFPGLIYRM + K+VLLIFVSGKIV
Sbjct: 176 GHFSSYEPELFPGLIYRMNKQKVVLLIFVSGKIV 209
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QNIV + +++ + L+ +A H + Y P+ F +I R+++PK LIF SGK+V+TG
Sbjct: 63 LQNIVATVNLECRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG 121
Query: 142 AKVRDETYTA 151
AK D++ A
Sbjct: 122 AKSEDDSRLA 131
>gi|47217167|emb|CAG11003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 283
Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 107/119 (89%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+FPIRLEGL +H
Sbjct: 164 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQ 223
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 224 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 282
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
F +I R+++P+ LIF SGK+V TGAK +++ A
Sbjct: 141 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA 177
>gi|395330269|gb|EJF62653.1| TBP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 137
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 98/118 (83%), Positives = 106/118 (89%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE S+LA+RKYARI+QKLGF AKF +FKIQNIVGSCDVKFPIRLEGLAYSHG
Sbjct: 19 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 78
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +PK+VLLIFVSGKIV+TGAKVR+E YTAF IY VL EFRK
Sbjct: 79 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLVEFRK 136
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 121 RMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
R++ PK LIF SGK+V+TGAK D++ A
Sbjct: 2 RIRDPKTTALIFASGKMVVTGAKSEDDSRLA 32
>gi|119187015|ref|XP_001244114.1| hypothetical protein CIMG_03555 [Coccidioides immitis RS]
Length = 137
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 106/119 (89%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 19 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 78
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVLT+FRKV
Sbjct: 79 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRKV 137
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 121 RMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
R+++PK LIF SGK+V+TGAK D++ A
Sbjct: 2 RIREPKTTALIFASGKMVVTGAKSEDDSKLA 32
>gi|320164625|gb|EFW41524.1| Tbpl2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 208
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 127/187 (67%), Gaps = 26/187 (13%)
Query: 4 YICYLILGAVSSV-KNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------- 46
Y YL V V +N+VST NL LDLK I +QARNAEYNPK
Sbjct: 14 YEDYLRTSVVQPVLQNVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMRIREPKTTA 73
Query: 47 --------VCTGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRL 97
VCTGAKSE S+ AARK+A+IIQK+G+ AKF DFKIQN+V SCDVKFPIRL
Sbjct: 74 LIFASGKMVCTGAKSEHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASCDVKFPIRL 133
Query: 98 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYP 157
EGL H F+SYEPE+FPGL+Y M PK+VLLIFVSGK+V+TGAK +++ TAF NIY
Sbjct: 134 EGLVLGHSTFASYEPEIFPGLVYHMVSPKVVLLIFVSGKVVLTGAKEKEQITTAFNNIYA 193
Query: 158 VLTEFRK 164
VL E++K
Sbjct: 194 VLKEYKK 200
>gi|399949933|gb|AFP65589.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 262
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 125/177 (70%), Gaps = 25/177 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ ++N+VSTVNL +LDLK+IAL+ RNAEYNP+ V
Sbjct: 85 IPDIQNVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRDPKTTALIFSSGKMVI 144
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE+ +KL +KYARIIQK+G+ KF DFKIQNIV SCD KFPIRLE LA++H F
Sbjct: 145 TGAKSEETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTKFPIRLESLAHAHNQF 204
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
SYEPELFPGLIYRM PK+VLLIFVSGK+V+TGAK R++ Y AF NIY VL F+K
Sbjct: 205 CSYEPELFPGLIYRMISPKVVLLIFVSGKLVLTGAKQRNDIYQAFNNIYAVLCLFKK 261
>gi|330038400|ref|XP_003239586.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206510|gb|AEA38688.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 231
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 127/178 (71%), Gaps = 25/178 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ ++N+V+TVNL +LDLK+IA++ARNAE+NP+ V
Sbjct: 54 IPDIQNVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPKTTALIFSSGKIVV 113
Query: 49 TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE S++A +KY RIIQ+LG+ AKF +F+IQNIV SCDV+FPIRLE LA++H F
Sbjct: 114 TGAKSEDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFPIRLESLAHAHNQF 173
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
SYEPELFPGLIYRM PK+VLLIFVSGK+V+TGAK R + Y AF NIY VL FRK+
Sbjct: 174 CSYEPELFPGLIYRMINPKVVLLIFVSGKLVLTGAKQRKDIYQAFSNIYAVLCLFRKI 231
>gi|37727185|gb|AAO34523.1| TATA-binding protein isoform 4 [Branchiostoma floridae]
Length = 136
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 105/118 (88%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE QS+LAARKYAR++QKLGFP KF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 17 VCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQ 76
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR+E Y AFE IYP+L FRK
Sbjct: 77 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILKGFRK 134
>gi|326497179|dbj|BAK02174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/119 (83%), Positives = 105/119 (88%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE SKLA+RKYARIIQKLGF AKF DFKIQNIVGSCD+KFPIRLEGLA H
Sbjct: 19 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 78
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAKVR+E Y AFE IYPVL +FRKV
Sbjct: 79 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 137
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 121 RMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
R+++PK LIF SGK+V+TGAK D++ A
Sbjct: 2 RIREPKTTALIFASGKMVVTGAKSEDDSKLA 32
>gi|160331843|ref|XP_001712628.1| tfIID [Hemiselmis andersenii]
gi|159766077|gb|ABW98303.1| tfIID [Hemiselmis andersenii]
Length = 267
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 126/178 (70%), Gaps = 25/178 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ V+N+VSTV+L +LDLK+IAL+ARNAEYNP+ V
Sbjct: 90 IPDVQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVI 149
Query: 49 TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE+ +KL +KYARIIQ+LG+ KF DF+IQNIV SCDVKFPIRLE LA++H F
Sbjct: 150 TGAKSEEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCDVKFPIRLESLAHAHNQF 209
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
SYEPELFPGLIYRM PK+VLLIFVSGK+V+TGAK R + Y AF NIY VL F+K
Sbjct: 210 CSYEPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKERKDIYQAFNNIYAVLCLFKKT 267
>gi|162605642|ref|XP_001713336.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162605926|ref|XP_001713478.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162606298|ref|XP_001713179.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|6690140|gb|AAF24005.1|AF083031_2 TATA binding protein of transcription factor IID [Guillardia theta]
gi|13794403|gb|AAK39780.1|AF083031_144 TATA binding protein of transcription factor IID [Guillardia theta]
gi|4583657|emb|CAB40395.1| TATA binding protein of transcription factor IID [Guillardia theta]
Length = 249
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 128/176 (72%), Gaps = 25/176 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+VSTV+L +LDLK+IAL+ARNAEYNP+ V TG
Sbjct: 74 NIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVVTG 133
Query: 51 AKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKSE +++A +KYARIIQ+LG+ AKF DF+IQNIV SCDV+FPIRLE LA++H F S
Sbjct: 134 AKSEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVASCDVRFPIRLESLAHAHNQFCS 193
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
YEPELFPGLIYRM PK+VLLIFVSGK+V+TGAK R++ + AF NIY VL ++K
Sbjct: 194 YEPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKQRNDIFQAFSNIYSVLCLYKKT 249
>gi|118352110|ref|XP_001009328.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89291095|gb|EAR89083.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 246
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 120/173 (69%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL KLDLK+IAL+ARNAEYNPK VCTGA
Sbjct: 53 LQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGA 112
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+E+ S AARKYA+IIQK+GFP +FKDFKIQNIVGS DVKFPI L+ L H F YE
Sbjct: 113 KTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYE 172
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PE+FPGLIYR KIVLLIFVSGKIV+TGAK R+ AF+ IY VL ++K
Sbjct: 173 PEIFPGLIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQK 225
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis]
Length = 238
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 122/173 (70%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTV+L C+L+L I + RN+EYNP VCTGA
Sbjct: 65 LQNVVSTVSLGCELNLTYINTRTRNSEYNPARFTGLIMRIRNPRVTALIFRSGKLVCTGA 124
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+ E+ S LAA+K+ARIIQK+GFP KF+DFKIQNIV + D+KFPI+LE L++ HG FSSYE
Sbjct: 125 RCEEDSFLAAKKFARIIQKIGFPVKFRDFKIQNIVATADLKFPIKLENLSHKHGQFSSYE 184
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GKIV+TGAK R E A NIYP+L FRK
Sbjct: 185 PELYPGLIYRMVLPRVVLLIFVNGKIVLTGAKNRQELKDALHNIYPILKSFRK 237
>gi|63145982|gb|AAY33926.1| TATA box binding protein [Ovis aries]
Length = 141
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/141 (70%), Positives = 109/141 (77%), Gaps = 24/141 (17%)
Query: 21 STVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQ 56
STVNL CKLDLK IAL+ARNAEYNPK VCTGAKSE+Q
Sbjct: 1 STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 60
Query: 57 SKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFP 116
S+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H FSSYEPELFP
Sbjct: 61 SRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFP 120
Query: 117 GLIYRMKQPKIVLLIFVSGKI 137
GLIYRM +P+IVLLIFVSGK+
Sbjct: 121 GLIYRMIKPRIVLLIFVSGKV 141
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R+++P+ LIF SGK+V TGAK +++ A
Sbjct: 21 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA 64
>gi|3122945|sp|Q27850.1|TBP_TETTH RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349811|gb|AAC14470.1| TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 119/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL KLDLK+IAL+ARNAEYNPK VCTGA
Sbjct: 53 LQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGA 112
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+E+ S AARKYA+IIQK+GFP +FKDFKIQNIVGS DVKFPI L+ L H F YE
Sbjct: 113 KTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYE 172
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PE+FPG IYR KIVLLIFVSGKIV+TGAK R+ AF+ IY VL ++K
Sbjct: 173 PEIFPGKIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQK 225
>gi|313226921|emb|CBY22066.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 115/155 (74%), Gaps = 24/155 (15%)
Query: 36 LQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYARIIQKL 71
++ARNAEYNPK VCTGAKSE++S+LAARKYAR+IQKL
Sbjct: 1 MRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKL 60
Query: 72 GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLI 131
GFPAKFKDFKIQN+VGS DVKF IRLE L +H F+S+EPELFPGL+YRM +PK+VLLI
Sbjct: 61 GFPAKFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLI 120
Query: 132 FVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
FVSGK+V+TGAK R E AF NIYP+L +FRK Q
Sbjct: 121 FVSGKVVLTGAKQRKEIDDAFNNIYPILRKFRKQQ 155
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 241
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L +I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGTELKLMQINTRTRNSEYNPARFTGLIMRIRNPRATALIFHSGKLVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+ E+ S LA RK+ARIIQKLGFP KF +FKIQNIV +CD+KFPI+LE L + HG FSSYE
Sbjct: 128 RCEEDSYLATRKFARIIQKLGFPVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GKIV+TGAK R E A NIYP+L FRK
Sbjct: 188 PELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRTELQDALNNIYPILKSFRK 240
>gi|258563652|ref|XP_002582571.1| TATA-box binding protein [Uncinocarpus reesii 1704]
gi|237908078|gb|EEP82479.1| TATA-box binding protein [Uncinocarpus reesii 1704]
Length = 251
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/151 (66%), Positives = 114/151 (75%), Gaps = 7/151 (4%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK----VCTGAKSEQQSKL---AARKYARIIQ 69
+NIV+TVNLDC+LDLK IAL ARNAEYNPK V + + + L + + +
Sbjct: 90 RNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 70 KLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVL 129
GF AKF DFKIQNIVGSCD+KF IRLEGLA H FSSYEPELFPGLIYRM +PKIVL
Sbjct: 150 NSGFNAKFTDFKIQNIVGSCDIKFSIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVL 209
Query: 130 LIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
LIFVSGKIV+TGAKVR+E Y AFE IYPVLT
Sbjct: 210 LIFVSGKIVLTGAKVREEIYQAFEMIYPVLT 240
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 241
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE+ S LA RK+ARIIQKLGF AKF +FKIQNIV +CD+KFPI+LE L + HG FSSYE
Sbjct: 128 RSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GK+V+TGAK R E A NIYP+L FRK
Sbjct: 188 PELYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRK 240
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera]
Length = 241
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE+ S LA RK+ARIIQKLGF AKF +FKIQNIV +CD+KFPI+LE L + HG FSSYE
Sbjct: 128 RSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GK+V+TGAK R E A NIYP+L FRK
Sbjct: 188 PELYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRK 240
>gi|449016069|dbj|BAM79471.1| TATA-box binding protein [Cyanidioschyzon merolae strain 10D]
Length = 260
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 25/177 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++VNL C LDL+ IA++ARNAEYNP+ V TGA
Sbjct: 45 LQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRIRDPRTTALIFSSGKVVITGA 104
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+SE+ ++LAARKYA+I++KLG+ K DF++ N+V S DV+FPIRLE LA++H ++ Y
Sbjct: 105 RSEEDARLAARKYAKIVRKLGYADVKLADFELHNLVASADVRFPIRLEALAHAHSNYAHY 164
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
EPELFPGL+YRM +P++ LLIFVSGK+VITGAK RD+ AF+ +YPVL +FRK
Sbjct: 165 EPELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDLNEAFQRLYPVLCQFRKADS 221
>gi|331686250|gb|AED87005.1| tata box binding protein [Stylonychia lemnae]
Length = 285
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 121/174 (69%), Gaps = 25/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVST NL KLDL+KIAL RNAEYNPK VCTGA
Sbjct: 103 LQNIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGA 162
Query: 52 KSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE+ SK AA+KY++ I+K+GF +DFKIQNIVGSCDV+FPI LE L+ H FS Y
Sbjct: 163 KSEEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFSQY 222
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPE+FPGLIYRM PKIVLLIF SGKIV+TGAK +++ AF NIYPVL +F++
Sbjct: 223 EPEIFPGLIYRMANPKIVLLIFASGKIVLTGAKNKNDITLAFNNIYPVLQKFKR 276
>gi|444728636|gb|ELW69085.1| TATA-box-binding protein [Tupaia chinensis]
Length = 313
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 100/112 (89%)
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H FSSYEPE
Sbjct: 201 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 260
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
LFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 261 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 312
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
Length = 241
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 117/173 (67%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGIQLPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+ E+ S LA RK+ARIIQKLGF KF +FKIQNIV +CD+KFPI+LE L + HG FSSYE
Sbjct: 128 RCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GKIV+TGAK R E A NIYP+L FRK
Sbjct: 188 PELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRAELQDALNNIYPILKSFRK 240
>gi|403333508|gb|EJY65856.1| Tata box binding protein [Oxytricha trifallax]
Length = 500
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 25/169 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVST NL KLDL+KIA+ RNAEYNPK VCTGA
Sbjct: 312 LQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGA 371
Query: 52 KSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE+ S+ AA+KY++ I+K+GF +DFKIQNIVGSCDV FPI LE L+ +H FS Y
Sbjct: 372 KSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQY 431
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
EPE+FPGLIYRM PKIVLLIF SGKIV+TGAK +++ A+ENIYPVL
Sbjct: 432 EPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 480
>gi|348686379|gb|EGZ26194.1| hypothetical protein PHYSODRAFT_345098 [Phytophthora sojae]
Length = 255
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ N+V TV+L LDLK IAL ARNAEYNPK V TG
Sbjct: 54 IMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGG 113
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
SE+ +LAARK+ R+IQKL FPAKF +FK++N++G+CD++FPIRLEGL H FSSYE
Sbjct: 114 TSEESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYE 173
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIY++ +PK+ LLIFVSGKIV+ GA+ + + A + +YPVL ++RK+
Sbjct: 174 PELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQYRKM 227
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KI N+VG+ D+K P+ L+ +A H + Y P+ F +I R++ PK LIF SGKIVIT
Sbjct: 53 KIMNVVGTVDLKTPLDLKTIAL-HARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVIT 111
Query: 141 GA 142
G
Sbjct: 112 GG 113
>gi|301112330|ref|XP_002905244.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262095574|gb|EEY53626.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 251
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ N+V TV+L LDLK IAL ARNAEYNPK V TG
Sbjct: 50 IMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGG 109
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
SE +LAARK+ R+IQKL FPAKF +FK++N++G+CD++FPIRLEGL H FSSYE
Sbjct: 110 TSEDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYE 169
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PELFPGLIY++ +PK+ LLIFVSGKIV+ GA+ + + A + +YPVL ++RK+
Sbjct: 170 PELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQYRKM 223
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
+ KI N+VG+ D+K P+ L+ +A H + Y P+ F +I R++ PK LIF SGKIV
Sbjct: 47 EVKIMNVVGTVDLKTPLDLKTIAL-HARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIV 105
Query: 139 ITGAKVRD 146
ITG D
Sbjct: 106 ITGGTSED 113
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 241
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 117/173 (67%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGIELPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+ E+ S LA RK+ARIIQKLGF KF +FKIQNIV +CD+KFPI+LE L + HG FSSYE
Sbjct: 128 RCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGLIYRM P++VLLIFV+GKIV+TGAK R E A NIYP+L FRK
Sbjct: 188 PELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRVELQDALNNIYPILKSFRK 240
>gi|307206120|gb|EFN84200.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 241
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VST++L +L L I ++ RN+EYNP VCTGA
Sbjct: 68 LQNVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLVMRIQNPRATALIFRSGKLVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE +S LAA+K+ARIIQKLGFP +F F +QNIV +CD+KFPI+LE L HG FSSYE
Sbjct: 128 RSEDESLLAAKKFARIIQKLGFPVRFTSFTVQNIVATCDLKFPIKLESLNQMHGQFSSYE 187
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGL YRM +P++VLLIFV+GK+VITGAK R++ + A +IYP+L FRK
Sbjct: 188 PELYPGLTYRMLKPRVVLLIFVNGKVVITGAKKREDLHEALYHIYPILKSFRK 240
>gi|323447675|gb|EGB03588.1| hypothetical protein AURANDRAFT_33824 [Aureococcus anophagefferens]
Length = 274
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 118/178 (66%), Gaps = 24/178 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
GA V+N+V+TVNL +DL+ +AL ARNAEYNPK
Sbjct: 45 GATIDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKM 104
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE ++ ARK+A II+K+GF KF +FK+QN+V + D FPIRLE L Y+H
Sbjct: 105 VITGAKSEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEALVYAHAK 164
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FSSYEPELFPGLIYR+ PK VLL+FVSG++V+TG K TAFE +YPVLTEF+K
Sbjct: 165 FSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
>gi|331686256|gb|AED87008.1| tata box binding protein [Nyctotherus ovalis]
Length = 195
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 120/172 (69%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVSTVNL C+LDL+KI LQA+NAEYNPK VCTGA
Sbjct: 17 LENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTGA 76
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE S+ AA KYA+ I+KLGF KFK+F IQN+V SC V+F I L+ L S+ FS+Y+
Sbjct: 77 KSETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFSTYD 136
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
PE+FPGLI+RM+ PKIV LIF SGKI++TGAK RD+ + A+ IYP+LT F+
Sbjct: 137 PEIFPGLIFRMEDPKIVFLIFSSGKIILTGAKQRDQIFKAYHKIYPMLTIFK 188
>gi|331686248|gb|AED87004.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 302
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 25/169 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVST NL KLDL+KIA+ RNAEYNPK VCTGA
Sbjct: 114 LQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGA 173
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE+ S+ AA+KY++ I+K+GF +DFKIQNIVGSCDV FPI LE L+ +H FS Y
Sbjct: 174 KSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQY 233
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
EPE+FPGLIYRM PKIVLLIF SGKIV+TGAK +++ A+ENIYPVL
Sbjct: 234 EPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 282
>gi|403354886|gb|EJY77003.1| Tata box binding protein [Oxytricha trifallax]
Length = 502
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 119/180 (66%), Gaps = 24/180 (13%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+L +++NIV+T N CKLDL++IAL ARN EYNPK
Sbjct: 294 LLNGDPTLQNIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIMRIREPKTTALIFQSG 353
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAK E++S+ A ++YA+ ++K+GF + K+FKIQN+V S D FPI LEGL+ H
Sbjct: 354 KMVCTGAKDEEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASHDCGFPISLEGLSNEH 413
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
FS+YEPELFPGLIYRM PK+V+LIF SGKIV TGAK R++ A+ NI PVL + +K
Sbjct: 414 DKFSTYEPELFPGLIYRMASPKLVMLIFASGKIVFTGAKTREQIRDAYRNIDPVLRKHKK 473
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 236
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 118/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+N V+TV+L C+L+L+ I + RN+EYNP VCTGA
Sbjct: 63 VRNCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGA 122
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+E + LAARK+ARIIQK+G+ KF +FK+QN+V + D++FP+RLE L HG FSSYE
Sbjct: 123 KNEHDANLAARKFARIIQKVGYNVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYE 182
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P++VLLIFV+GKIV TGAK E + ENIYP+L FRK
Sbjct: 183 PELFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEWEIRESLENIYPILQSFRK 235
>gi|332018160|gb|EGI58766.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 240
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 116/173 (67%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I ++ RN+EYNP VCTGA
Sbjct: 67 LQNVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGA 126
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SEQ S LAA+K+ARIIQKLGFP KF FKIQNIV +CD+KFPI+LE L HG FSSYE
Sbjct: 127 RSEQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIKLEILYQCHGQFSSYE 186
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL+PGL YRM P++VLLIFV+GK+V+TGAK R E A IYP L +RK
Sbjct: 187 PELYPGLTYRMYSPRVVLLIFVNGKVVLTGAKNRTELQDALNIIYPTLKMYRK 239
>gi|195388008|ref|XP_002052684.1| GJ17690 [Drosophila virilis]
gi|194149141|gb|EDW64839.1| GJ17690 [Drosophila virilis]
Length = 220
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T ++DC+LDLK I + RN+EY PK +CTGA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF D+K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 107 RNEMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GKIV TGAK R + E I P+L FRK
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDIMDCLEAISPILLSFRKT 220
>gi|167518271|ref|XP_001743476.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778575|gb|EDQ92190.1| predicted protein [Monosiga brevicollis MX1]
Length = 181
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 25/173 (14%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+N+V+TV +CKLDLK IA ARNAEY+PK +CTGAK
Sbjct: 8 RNLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICTGAK 67
Query: 53 SEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
SE + A RKYA+II+KLG+ + ++F+IQN+VGSCDV+FPIRLEGLA +H F +YE
Sbjct: 68 SEDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFCTYE 127
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PE+FPGL+YRM +PK+VLLIFVSGK+V+TGAK R + A IY +L +FRK
Sbjct: 128 PEIFPGLVYRMVKPKVVLLIFVSGKVVVTGAKSRQTIHDAINAIYSILQQFRK 180
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti]
gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti]
Length = 234
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 118/173 (68%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+N V+TV+L C+L+L+ I + RN+EYNP VCTGA
Sbjct: 61 VRNCVATVSLGCELNLQAINFRLRNSEYNPARFHGVVMRIREPRCTALVFRSGKIVCTGA 120
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E + LAARK+ARIIQKLG+ +F +FK+QN+V + D++FPIRLE L HG FSSYE
Sbjct: 121 RNEADAYLAARKFARIIQKLGYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYE 180
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPGLIYRM +P++VLLIFV+GKIV TGAK E + ENIYP+L FRK
Sbjct: 181 PELFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEREVTDSLENIYPILQSFRK 233
>gi|195117828|ref|XP_002003449.1| GI17918 [Drosophila mojavensis]
gi|193914024|gb|EDW12891.1| GI17918 [Drosophila mojavensis]
Length = 220
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T ++DC+LDLK I + RN+EY PK +CTGA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF D+K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 107 RNETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GKIV TGAK R + E I P+L FRK
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDIMDCLEAISPILLSFRKT 220
>gi|410989830|ref|XP_004001158.1| PREDICTED: TATA box-binding protein-like protein 2-like [Felis
catus]
Length = 135
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 99/111 (89%)
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H FSSYEPE
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
LFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 134
>gi|195035545|ref|XP_001989238.1| GH11614 [Drosophila grimshawi]
gi|193905238|gb|EDW04105.1| GH11614 [Drosophila grimshawi]
Length = 220
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T ++DC+LDLK I + RN+EY PK +CTGA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF D+K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 107 RNEIEANMGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P++VLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 167 PEMFPGLIYRMVKPRLVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 220
>gi|331686252|gb|AED87006.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 299
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 117/169 (69%), Gaps = 25/169 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIVST NL KLDL+KIAL RNAEYNP+ V TGA
Sbjct: 111 LQNIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKTTALIFSSGKMVRTGA 170
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE+ S+ AA+KY++ I+K+GF +DFKIQNIVGSCDV FPI LE L+ +H FS Y
Sbjct: 171 KSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQY 230
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
EPE+FPGLIYRM PKIVLLIF SGKIV+TGAK +++ A+ENIYPVL
Sbjct: 231 EPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 279
>gi|331686254|gb|AED87007.1| tata box binding protein [Sterkiella nova]
Length = 301
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 118/170 (69%), Gaps = 25/170 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++NIVST NL +L L++IA+ RNAEYNP+ VCTG
Sbjct: 112 TLQNIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCTG 171
Query: 51 AKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKSE+ S+ AA+KY++ I+K+GF +DFKIQNIVGSCDV FPI LE L+ +H FS
Sbjct: 172 AKSEELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQ 231
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
YEPE+FPGLIYRM PKIVLLIF SGKIV+TGAK +++ A+ENIYPVL
Sbjct: 232 YEPEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 281
>gi|242014208|ref|XP_002427783.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512252|gb|EEB15045.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 231
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 117/174 (67%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V+TVNL +LDL+KI RN EYNP V TG
Sbjct: 57 TLQNVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLVMRIREPKTTALIFRSGKIVVTG 116
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSE + LAARKYARIIQKLGF KF FKIQNIVG+CDV+FPI+LE L HG FSSY
Sbjct: 117 AKSEDAALLAARKYARIIQKLGFSIKFCSFKIQNIVGTCDVRFPIKLESLNQIHGQFSSY 176
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFP LIYR+ +P++VLLIFV+GKIV+TGA+ + + A + + P+L FRK
Sbjct: 177 EPELFPALIYRLVKPRVVLLIFVNGKIVLTGARTQQDIQEALDIMLPILKSFRK 230
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster]
gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor
gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster]
gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster]
gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster]
gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster]
gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct]
gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct]
gi|445085|prf||1908393A TATA-binding protein-related factor
Length = 224
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 120/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L + HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta]
gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta]
Length = 224
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 120/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L + HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|270005208|gb|EFA01656.1| hypothetical protein TcasGA2_TC007228 [Tribolium castaneum]
Length = 238
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N V+TV+L+ KLDL I + RN+EYNP VCTG
Sbjct: 64 TIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTG 123
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSEQ + LA++K+ARIIQKLGF KF +FKIQN+V +CD++FPI+LE L+ HG F SY
Sbjct: 124 AKSEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSY 183
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPG+IYRM +P + LLIFV+GKIV TG+K R+ + +NIYP+L F+K
Sbjct: 184 EPELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRSFKK 237
>gi|189236649|ref|XP_969256.2| PREDICTED: similar to TATA-box-binding protein [Tribolium
castaneum]
Length = 236
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N V+TV+L+ KLDL I + RN+EYNP VCTG
Sbjct: 62 TIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTG 121
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
AKSEQ + LA++K+ARIIQKLGF KF +FKIQN+V +CD++FPI+LE L+ HG F SY
Sbjct: 122 AKSEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSY 181
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPG+IYRM +P + LLIFV+GKIV TG+K R+ + +NIYP+L F+K
Sbjct: 182 EPELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRSFKK 235
>gi|325182645|emb|CCA17100.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 270
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 115/176 (65%), Gaps = 24/176 (13%)
Query: 14 SSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCT 49
+ V N+V T++L +L+LK IAL ARNAEYNPK V T
Sbjct: 74 TKVMNVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVIT 133
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
GA+SE+ +LA RK+ R+IQKL FPA+F++F+IQNI+G+ DV F IRLEG+ H F S
Sbjct: 134 GARSEEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCS 193
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
YEPELFPGLIYR+ +PK+ +LIFVSGKIV GAK A E +YPVL E+RK
Sbjct: 194 YEPELFPGLIYRLTEPKLTMLIFVSGKIVFCGAKDSSHLDQAIEKMYPVLLEYRKT 249
>gi|195434401|ref|XP_002065191.1| GK15318 [Drosophila willistoni]
gi|194161276|gb|EDW76177.1| GK15318 [Drosophila willistoni]
Length = 226
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T ++ C+LDLK I + RN+EY+PK +CTGA
Sbjct: 53 LQNIVATFSVACELDLKSINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 112
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF D+K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 113 RNEIEADIGSRKFARILQKLGFPVKFTDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 172
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 173 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 226
>gi|195472903|ref|XP_002088737.1| GE18732 [Drosophila yakuba]
gi|194174838|gb|EDW88449.1| GE18732 [Drosophila yakuba]
Length = 224
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|195577454|ref|XP_002078585.1| GD23502 [Drosophila simulans]
gi|194190594|gb|EDX04170.1| GD23502 [Drosophila simulans]
Length = 224
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|195339082|ref|XP_002036150.1| GM16720 [Drosophila sechellia]
gi|194130030|gb|EDW52073.1| GM16720 [Drosophila sechellia]
Length = 224
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E ++ + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|125984322|ref|XP_001355925.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|195172938|ref|XP_002027252.1| GL24756 [Drosophila persimilis]
gi|54644243|gb|EAL32984.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|194113089|gb|EDW35132.1| GL24756 [Drosophila persimilis]
Length = 220
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 119/174 (68%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 47 LQNIVATFSVNCELDLKTINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 106
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E+ + + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 107 RNERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + + I P+L FRK
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLDAISPILLSFRKT 220
>gi|332374320|gb|AEE62301.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 120/174 (68%), Gaps = 24/174 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N V+TV++ L+L+ I + RN E+NP+ VCTG
Sbjct: 69 ALQNCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLIMRIREPKTTALIFRSGKIVCTG 128
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
A++E + +A++K+AR+IQKLGF KF +FK+QN+V +CD+KFPI+LE L + HG FSSY
Sbjct: 129 ARNEFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKLENLNHMHGQFSSY 188
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGL+YRM +PKIVLLIFV+GKIV TG K R++ A ENI+P+L FRK
Sbjct: 189 EPELFPGLVYRMIKPKIVLLIFVNGKIVFTGGKSREDIKEALENIHPILRSFRK 242
>gi|194759081|ref|XP_001961778.1| GF14757 [Drosophila ananassae]
gi|190615475|gb|EDV30999.1| GF14757 [Drosophila ananassae]
Length = 224
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+T +++C+LDLK I + RN+EY+PK +CTGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
++E + + +RK+ARI+QKLGFP KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 111 RNEIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FPGLIYRM +P+IVLLIFV+GK+V TGAK R + E I P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRKT 224
>gi|219113475|ref|XP_002186321.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583171|gb|ACI65791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 117/176 (66%), Gaps = 25/176 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNP-----------------------KVC-TGA 51
++N+ STVNL +LDLKKIAL+ RN E+NP K+C TG
Sbjct: 4 IQNMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVTGV 63
Query: 52 KSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS + LAA+K+A I++++GF P + DFK+QNIVG+ DV FPIRLEGL Y+H AF+SY
Sbjct: 64 KSTHNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFASY 123
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
EPELFPGLIYR P++V LIFVSGKIVITGAK + A ++PVL EF+K
Sbjct: 124 EPELFPGLIYRFVNPRVVFLIFVSGKIVITGAKKEMDLAHALTKLFPVLMEFKKTH 179
>gi|389748066|gb|EIM89244.1| TATA-box binding protein-like protein [Stereum hirsutum FP-91666
SS1]
Length = 249
Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 117/180 (65%), Gaps = 38/180 (21%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------VC-------------- 48
I G V +++ IV TVNLDC+LDLK IAL ARNAEY PK VC
Sbjct: 43 IEGIVPTLQTIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSG 102
Query: 49 ----TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
T AKSE S+LA RKYARI+QKLGF AKF +FKIQNIV SCD+KF IRLEGLAY
Sbjct: 103 KMIVTDAKSEDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRLEGLAYIT 162
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
G+ + LFPGLIYRM +PK+VLLIFVS VR+E YTAF +Y VL EFRK
Sbjct: 163 GSSA-----LFPGLIYRMIKPKVVLLIFVS---------VREEIYTAFNTVYTVLVEFRK 208
>gi|224009416|ref|XP_002293666.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
gi|220970338|gb|EED88675.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
Length = 167
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 25/167 (14%)
Query: 22 TVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQS 57
T +L +LDLK+IAL+ RN E+NP+ V TG KS
Sbjct: 1 TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC 60
Query: 58 KLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFP 116
LA +K+A I++++GF PA F DFKIQN+VG+ DV FPIRLEG+ Y+H FSSYEPELFP
Sbjct: 61 SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP 120
Query: 117 GLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
GLIYR+ QP++VLLIFVSGK+VITGAK ++ A +YPVL EFR
Sbjct: 121 GLIYRLVQPRVVLLIFVSGKVVITGAKTEEQMVEALRKVYPVLVEFR 167
>gi|256084656|ref|XP_002578543.1| TATA-box binding protein [Schistosoma mansoni]
gi|353228683|emb|CCD74854.1| putative tata-box binding protein [Schistosoma mansoni]
Length = 211
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 117/175 (66%), Gaps = 24/175 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ N+VSTV+L C ++L+K+ L R+AEYNP+ VCTGA
Sbjct: 37 IHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRMVCTGA 96
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE + L +RK ARI+Q+LGF KF +F IQN+VG D+KFPIRLEG+ ++ + YE
Sbjct: 97 RSESDANLGSRKCARILQRLGFDVKFMNFTIQNMVGLADLKFPIRLEGVQLANEQMTQYE 156
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
PE+FP LIYR+ +P++V+LIFV+GKIV+TGAK R+ Y A N+YP+L +RK+
Sbjct: 157 PEIFPALIYRIIKPRLVMLIFVNGKIVMTGAKSREHLYEALNNVYPILYNYRKIN 211
>gi|76155499|gb|AAX26791.2| SJCHGC06425 protein [Schistosoma japonicum]
Length = 227
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 117/175 (66%), Gaps = 24/175 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ N+VSTV+L C ++L+K+ L R+AEYNP+ VCTGA
Sbjct: 53 IHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGA 112
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE + L +RK ARIIQKLGF KF +F IQN+VG D++FP+RLEG+ ++ + YE
Sbjct: 113 RSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYE 172
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
PE+FP LIYR+ +P++V+LIFV+GK+V+TGAK R+ Y A N+YP+L +RK+
Sbjct: 173 PEIFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREHLYEALNNVYPILYNYRKIN 227
>gi|226466670|emb|CAX69470.1| TATA box binding protein like 2 [Schistosoma japonicum]
Length = 212
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 117/175 (66%), Gaps = 24/175 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ N+VSTV+L C ++L+K+ L R+AEYNP+ VCTGA
Sbjct: 38 IHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGA 97
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE + L +RK ARIIQKLGF KF +F IQN+VG D++FP+RLEG+ ++ + YE
Sbjct: 98 RSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYE 157
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
PE+FP LIYR+ +P++V+LIFV+GK+V+TGAK R+ Y A N+YP+L +RK+
Sbjct: 158 PEIFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREHLYEALNNVYPILYNYRKIN 212
>gi|357612499|gb|EHJ68033.1| putative TATA binding protein [Danaus plexippus]
Length = 283
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 115/172 (66%), Gaps = 24/172 (13%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+N +STV+LDC+L+L I + R +EYNP VCTGAK
Sbjct: 111 QNCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVVMKILEPRATALVFRSGKIVCTGAK 170
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
+ S +AARK+ARIIQKLGFP KF DFK+ N + + D++FPI+LE L +HG F+SYEP
Sbjct: 171 NGHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKLEALQQAHGQFTSYEP 230
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
ELF GL+YRM +P++VLLIFV+GK+VITGAK E Y A + I+P+L ++K
Sbjct: 231 ELFSGLVYRMIRPRVVLLIFVNGKMVITGAKTNQEVYEAVDIIHPILRSYKK 282
>gi|322802013|gb|EFZ22550.1| hypothetical protein SINV_10179 [Solenopsis invicta]
Length = 158
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 105/155 (67%), Gaps = 24/155 (15%)
Query: 34 IALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYARIIQ 69
I ++ RN+EYNP VCTGA+SE+ S LAA+K+ARIIQ
Sbjct: 3 INVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQ 62
Query: 70 KLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVL 129
KLGFP KF FKIQNIV +CD+KFPI+L+ L HG FSSYEPEL+PGL YRM P++VL
Sbjct: 63 KLGFPVKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVL 122
Query: 130 LIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
LIFV+GK+V+TGAK R E A NIYP+L FRK
Sbjct: 123 LIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRK 157
>gi|432937597|ref|XP_004082456.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2-like [Oryzias latipes]
Length = 354
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 115/180 (63%), Gaps = 26/180 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTV L C LDLK IA QARNAEYNPK
Sbjct: 174 GIVPQLQNIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 233
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE++S+LAARKYAR++QKLGF A+F +FKIQN+V SCDV FPIRLEGL +H
Sbjct: 234 VCTGAKSEEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQ 293
Query: 107 FSSYEPELFPGLIYRMKQ-PKIVLLIFVSG-KIVITGAKVRDETYTAFENIYPVLTEFRK 164
FS Y+ P + PK++L F+ +V+TGAK R E Y AFENIYP+L FRK
Sbjct: 294 FSRYQSHQHPTNSWTSCXFPKMLLCFFLDHISVVLTGAKERAEIYEAFENIYPILKGFRK 353
>gi|119601082|gb|EAW80676.1| TATA box binding protein like 2, isoform CRA_b [Homo sapiens]
Length = 113
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 94/111 (84%)
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++ + RKYAR++QKLGFPA+F DFKIQN+VGSCDV+FPIRLEGL +H FSSYEPE
Sbjct: 2 QKMQNITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 61
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
LFPGLIYRM +P+IVLLIFVSGK+V+TGAK R E Y AFENIYP+L F+K
Sbjct: 62 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 112
>gi|452819885|gb|EME26936.1| transcription initiation factor TFIID TATA-box-binding protein
[Galdieria sulphuraria]
Length = 206
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 118/179 (65%), Gaps = 26/179 (14%)
Query: 14 SSVKNIVSTVNLDCK-LDLKKIALQARNAEYNPK------------------------VC 48
+ + N+V TVNL + LDLK IA++ARNAEYNPK V
Sbjct: 28 AEIVNLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVV 87
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE++SK AA+K+ I++K G+ AKF +FK+QN+VG+ V FPIRLE LA +H F
Sbjct: 88 TGAKSEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQF 147
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
+YEPELFPGL+YRM +PKIVLLIFVSGK+V+TG K R + A E I VL F+K +
Sbjct: 148 CTYEPELFPGLVYRMMEPKIVLLIFVSGKLVLTGGKTRKQIDEALEKIKNVLVTFKKTR 206
>gi|407813853|gb|AFU35092.1| TATA box binding protein, partial [Tetranychus urticae]
Length = 122
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 89/96 (92%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 27 VCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 86
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGA
Sbjct: 87 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
P+ F +I R+++P+ LIF SGK+V TGAK +++ A
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA 40
>gi|222433591|gb|ACM51140.1| TATA box binding protein [Tetranychus cinnabarinus]
Length = 122
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 89/96 (92%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 27 VCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQ 86
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGA
Sbjct: 87 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
P+ F +I R+++P+ LIF SGK+V TGAK +++ A
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA 40
>gi|307180303|gb|EFN68336.1| TATA-box-binding protein [Camponotus floridanus]
Length = 252
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 115/185 (62%), Gaps = 35/185 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VST NL +L L I ++ RN+EYNP VCTGA
Sbjct: 68 LQNVVSTANLGTELKLNYINIRTRNSEYNPARFTGLIMRIRNPRATALIFSSGKLVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKF--KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KSE S LAA+++ARIIQKLGFP KF FK+QNIV +CDVKFPI+LE L H S
Sbjct: 128 KSENDSFLAAKRFARIIQKLGFPVKFMSDSFKVQNIVATCDVKFPIKLENLYREHPQLCS 187
Query: 110 YEPELFPGLIYRMKQP---------KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
YEPEL+PGLIYR+ P K+VLLIFV+GK+V+TGAK DE A +YPVL
Sbjct: 188 YEPELYPGLIYRVYIPGNRDNPPISKVVLLIFVNGKVVLTGAKNIDELRNALNLMYPVLM 247
Query: 161 EFRKV 165
++RK+
Sbjct: 248 QYRKM 252
>gi|67611070|ref|XP_667132.1| TATA-binding protein [Cryptosporidium hominis TU502]
gi|54658235|gb|EAL36903.1| TATA-binding protein [Cryptosporidium hominis]
Length = 249
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 114/178 (64%), Gaps = 29/178 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NI+++V+L C+LDL+ IA+ ARNAEYNPK + TGA
Sbjct: 72 IQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGA 131
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+ E +KL +K A+I QK GFP KF +FK++NI+ + D KFPIRLEGLAY H F +Y
Sbjct: 132 RLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNY 191
Query: 111 EPELFPGLIYRMKQP----KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGL+YR K VLL+FVSGK+++TG K E F+NIYPVL ++RK
Sbjct: 192 EPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEICNVFDNIYPVLCQYRK 249
>gi|66359858|ref|XP_627107.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|38491418|gb|AAR21861.1| TATA-binding protein [Cryptosporidium parvum]
gi|46228532|gb|EAK89402.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|323509817|dbj|BAJ77801.1| cgd8_2030 [Cryptosporidium parvum]
Length = 249
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 114/178 (64%), Gaps = 29/178 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NI+++V+L C+LDL+ IA+ ARNAEYNPK + TGA
Sbjct: 72 IQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGA 131
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+ E +KL +K A+I QK GFP KF +FK++NI+ + D KFPIRLEGLAY H F +Y
Sbjct: 132 RLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNY 191
Query: 111 EPELFPGLIYRMKQP----KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPELFPGL+YR K VLL+FVSGK+++TG K E F+NIYPVL ++RK
Sbjct: 192 EPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEICNVFDNIYPVLCQYRK 249
>gi|341886263|gb|EGT42198.1| hypothetical protein CAEBREN_08601 [Caenorhabditis brenneri]
Length = 210
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 113/168 (67%), Gaps = 24/168 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VST++L LDL+KIAL RN EYNP VC GA
Sbjct: 40 IENVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVCAGA 99
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE+ + A+RKYARI++KLG+ AK F+IQNIV +C+V+F I L G++++H F ++E
Sbjct: 100 KSEESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFCTFE 159
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
PE+FPGL YRM QPK+ ++IF SGK+ ITGAK +++ TAF +IYP+L
Sbjct: 160 PEIFPGLHYRMLQPKVTIVIFPSGKLNITGAKNKEDIDTAFRHIYPIL 207
>gi|209877002|ref|XP_002139943.1| TATA-box-binding protein [Cryptosporidium muris RN66]
gi|209555549|gb|EEA05594.1| TATA-box-binding protein, putative [Cryptosporidium muris RN66]
Length = 211
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 29/183 (15%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + ++NI+++V+L C+LDL+ IA+ ARNAEYNPK
Sbjct: 29 GVMPEIQNIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSGRM 88
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
+ TGA++E ++ +K A+I QK G P KF +F+++N++ + D KFPIRLEGLAY H
Sbjct: 89 MITGARNENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYDHR 148
Query: 106 AFSSYEPELFPGLIYRMK----QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
F +YEPELFPGL+YR K V+L+FVSGK+++TG + E + F+NIYPVL +
Sbjct: 149 EFCNYEPELFPGLVYRYHPENSPTKAVILLFVSGKVIVTGCRSYKEICSVFDNIYPVLCQ 208
Query: 162 FRK 164
+RK
Sbjct: 209 YRK 211
>gi|118789378|ref|XP_317373.3| AGAP008084-PA [Anopheles gambiae str. PEST]
gi|116123189|gb|EAA12691.4| AGAP008084-PA [Anopheles gambiae str. PEST]
Length = 200
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 24/145 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+N V+TV++ C+L+LK I + RN+EYNP +CTGA
Sbjct: 56 VRNCVATVSVGCELNLKTINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTGA 115
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+EQQ+ L RK+ RIIQKLGF KF DFK+QN+V + D++FPIRLE L HG FSSYE
Sbjct: 116 KNEQQAHLGLRKFVRIIQKLGFDVKFLDFKVQNLVATADLRFPIRLENLNQVHGQFSSYE 175
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGK 136
PELFPGLIYRM +P++VLLIFV+GK
Sbjct: 176 PELFPGLIYRMVKPRVVLLIFVNGK 200
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
++N V + V + L+ + + S Y P F G++ R++ P+ L+F SGK++ TG
Sbjct: 56 VRNCVATVSVGCELNLKTINF-RTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTG 114
Query: 142 AKVRDETY 149
AK + +
Sbjct: 115 AKNEQQAH 122
>gi|281203489|gb|EFA77689.1| TATA-binding protein [Polysphondylium pallidum PN500]
Length = 192
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 103/178 (57%), Gaps = 58/178 (32%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVN+ +LDLK IAL ARNAEYNPK
Sbjct: 25 GIVPVLQNIVSTVNMGTQLDLKTIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKM 84
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+ SKLAARKYARIIQKL FPA+F DFKIQNIVGSCDVKFPI+LE L +H +
Sbjct: 85 VCTGAKSEEASKLAARKYARIIQKLDFPAQFTDFKIQNIVGSCDVKFPIKLEMLNNTHNS 144
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F++ VR+E Y AFENIYPVLT ++K
Sbjct: 145 FTN----------------------------------VREEIYEAFENIYPVLTTYKK 168
>gi|378755540|gb|EHY65566.1| TATA-binding protein, partial [Nematocida sp. 1 ERTm2]
Length = 159
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 95/136 (69%), Gaps = 24/136 (17%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G + +++NIV+TVNL C+LDLK IAL ARNAEYNPK
Sbjct: 22 GLIPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKM 81
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGA+SE+ SK+AA+KY+ II++LG+P +F +FKIQNIV SCD KF IRLEGL + H
Sbjct: 82 VVTGARSEEDSKMAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSN 141
Query: 107 FSSYEPELFPGLIYRM 122
+SSYEPELFPGLIYRM
Sbjct: 142 YSSYEPELFPGLIYRM 157
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSS-YEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
IQNIV + V RL+ A + GA ++ Y P+ F +I R+++P+ LIF SGK+V+T
Sbjct: 27 IQNIVAT--VNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVT 84
Query: 141 GAKVRDETYTAFENI--------YPV-LTEFR 163
GA+ +++ A + YPV TEF+
Sbjct: 85 GARSEEDSKMAAKKYSIIIRRLGYPVRFTEFK 116
>gi|431904621|gb|ELK10003.1| TATA-box-binding protein [Pteropus alecto]
Length = 193
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 87/121 (71%), Gaps = 24/121 (19%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 61 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 120
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 121 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 180
Query: 107 F 107
F
Sbjct: 181 F 181
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 65 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 123
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 124 GAKSEEQSRLA 134
>gi|116195450|ref|XP_001223537.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
gi|88180236|gb|EAQ87704.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
Length = 242
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 24/170 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V+TV+L C+LDL+ I+ QARN EYN + V TGA
Sbjct: 37 IQNVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVITGA 96
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE +KLAARK+AR +QK GF F DFK+QN VGS F IRLE +A+ + + YE
Sbjct: 97 KSEALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCDFLIRLERIAHMYRESAMYE 156
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
PELFPGL+Y M +PK+ L+F +GKIV+TGAK ++ AF N+YP+L E
Sbjct: 157 PELFPGLVYTMLRPKLKCLVFSTGKIVLTGAKAVEDIQEAFANLYPLLLE 206
>gi|440295403|gb|ELP88316.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 236
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 108/176 (61%), Gaps = 24/176 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV LDC ++L+ + + RNAEYNPK V TG
Sbjct: 61 IQNIVATVELDCNVNLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVITGG 120
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+ S+LA RKYARI+Q+LG+ KF FK+QN+V SCD+KF I L L + YE
Sbjct: 121 KTIDDSRLAGRKYARILQRLGYEVKFNHFKVQNVVASCDMKFAISLRDLITLSPKNTKYE 180
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
PE+FPG++YR+ +PK+VLLIF SGKIV TG K ++ AF+ IY +L + +++
Sbjct: 181 PEIFPGVVYRLAEPKMVLLIFASGKIVFTGGKEVEQINQAFKTIYKILLQVASIEK 236
>gi|281344600|gb|EFB20184.1| hypothetical protein PANDA_019435 [Ailuropoda melanoleuca]
Length = 89
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 82/89 (92%)
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+QS+LAARKYAR++QKLGFPA+F DFKIQN+VGSCDV+F IRLEGL +H FSSYEP
Sbjct: 1 SEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEP 60
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
ELFPGLIYRM +P+IVLLIFVSGK+V+TG
Sbjct: 61 ELFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
>gi|67479107|ref|XP_654935.1| TATA binding protein [Entamoeba histolytica HM-1:IMSS]
gi|296439771|sp|A7UFC2.1|TBPL1_ENTHI RecName: Full=TATA-box-binding protein-like protein 1; Short=EhTRF1
gi|56472030|gb|EAL49549.1| TATA binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|155007635|gb|ABS89251.1| TBP-related factor [Entamoeba histolytica]
gi|407041324|gb|EKE40663.1| transcription initiation factor TFIID family protein [Entamoeba
nuttalli P19]
gi|449703269|gb|EMD43751.1| TBPrelated factor, putative [Entamoeba histolytica KU27]
Length = 216
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 24/170 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV LDC ++L+ + + RNAEYNPK V TG
Sbjct: 41 IQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGG 100
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+ S+LA RKYARI+Q+LG+ KF FKIQN+V SCD+KF I L+ L + YE
Sbjct: 101 KTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYE 160
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
PE+FPG++YR+ PK+VLLIF SGKIV TG K ++ AF IY +L +
Sbjct: 161 PEIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKILLQ 210
>gi|167387403|ref|XP_001738146.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898721|gb|EDR25505.1| TATA-box-binding protein [Entamoeba dispar SAW760]
Length = 212
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 24/171 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L KL+L+KI +ARNAEYNPK VCTG +S
Sbjct: 36 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 95
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++SK+A++KYA+II+K+G+P + +F +QNIVGSCDVKF I L L S+ AF YEPE
Sbjct: 96 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEPE 155
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+FPGL+YRM PK+ LL+F +GK+V+TGAK + A++NIYP+L RK
Sbjct: 156 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRK 206
>gi|167386161|ref|XP_001737643.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165899478|gb|EDR26064.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 216
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 24/170 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV LDC ++L+ + + RNAEYNPK V TG
Sbjct: 41 IQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGG 100
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K+ S+LA RKYARI+Q+LG+ KF FKIQN+V SCD+KF I L+ L + YE
Sbjct: 101 KTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYE 160
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
PE+FPG++YR+ PK+VLLIF SGKIV TG K ++ AF IY +L +
Sbjct: 161 PEIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKILLQ 210
>gi|67473541|ref|XP_652533.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|296439770|sp|C4M7H7.1|TBP2_ENTHI RecName: Full=TATA-box-binding protein 2; Short=EhTBP2; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|56469391|gb|EAL47145.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 212
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 24/171 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L KL+L+KI +ARNAEYNPK VCTG +S
Sbjct: 36 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 95
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++SK+A++KYA+II+K+G+P + +F +QNIVGSCDVKF I L L S+ AF YEPE
Sbjct: 96 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPE 155
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+FPGL+YRM PK+ LL+F +GK+V+TGAK + A++NIYP+L RK
Sbjct: 156 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRK 206
>gi|167387263|ref|XP_001738088.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898834|gb|EDR25598.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 234
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 24/171 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L KL+L+KI +ARNAEYNPK VCTG +S
Sbjct: 58 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 117
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++SK+A++KYA+II+K+G+P + +F +QNIVGSCDVKF I L L S+ AF YEPE
Sbjct: 118 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEPE 177
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+FPGL+YRM PK+ LL+F +GK+V+TGAK + A++NIYP+L RK
Sbjct: 178 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRK 228
>gi|183235483|ref|XP_001914239.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|3915894|sp|P52653.2|TBP1_ENTHI RecName: Full=TATA-box-binding protein 1; Short=EhTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|3201503|emb|CAA88304.1| TATA box-binding protein [Entamoeba histolytica]
gi|169800528|gb|EDS88986.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449703333|gb|EMD43805.1| transcription initiation factor tfiid, putative [Entamoeba
histolytica KU27]
Length = 234
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 24/171 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L KL+L+KI +ARNAEYNPK VCTG +S
Sbjct: 58 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 117
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++SK+A++KYA+II+K+G+P + +F +QNIVGSCDVKF I L L S+ AF YEPE
Sbjct: 118 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPE 177
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+FPGL+YRM PK+ LL+F +GK+V+TGAK + A++NIYP+L RK
Sbjct: 178 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRK 228
>gi|351694348|gb|EHA97266.1| TATA box-binding protein-like protein 2 [Heterocephalus glaber]
Length = 354
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 86/121 (71%), Gaps = 24/121 (19%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLKKIAL A+NAEYNPK
Sbjct: 205 GIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 264
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGSCDV+F IRLEGL +H
Sbjct: 265 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQ 324
Query: 107 F 107
F
Sbjct: 325 F 325
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 209 QLQNIVSTVNLACKLDLKKIAL-HAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 267
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 268 GAKSEEQSRLA 278
>gi|294939316|ref|XP_002782409.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894015|gb|EER14204.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 302
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 111/162 (68%), Gaps = 26/162 (16%)
Query: 29 LDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKY 64
+DLKK+A +ARNAEYNP+ + TG+ SE+ +K AA+K
Sbjct: 141 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 200
Query: 65 ARIIQKLG-FP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRM 122
A+I+ K G +P A+F+ FKI+N+V S DV+FPIRLE LAY H ++ SYEPEL+PGL++R+
Sbjct: 201 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 260
Query: 123 KQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+PK+ LLIFVSGKIV TGAK RD+ AF NIYP+L +++
Sbjct: 261 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLLLKYQN 302
>gi|294939318|ref|XP_002782410.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894016|gb|EER14205.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 111/162 (68%), Gaps = 26/162 (16%)
Query: 29 LDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKY 64
+DLKK+A +ARNAEYNP+ + TG+ SE+ +K AA+K
Sbjct: 112 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 171
Query: 65 ARIIQKLG-FP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRM 122
A+I+ K G +P A+F+ FKI+N+V S DV+FPIRLE LAY H ++ SYEPEL+PGL++R+
Sbjct: 172 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 231
Query: 123 KQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+PK+ LLIFVSGKIV TGAK RD+ AF NIYP+L +++
Sbjct: 232 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLLLKYQN 273
>gi|145494864|ref|XP_001433426.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400543|emb|CAK66029.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 109/177 (61%), Gaps = 28/177 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTV+L +L+L I+ AR AEYNPK VCTGA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCTGA 86
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLA--YSHGAFSS 109
KSE QS +AARKYA+IIQKLGFPA FK+F IQNIV S D + PI+L+ +
Sbjct: 87 KSEDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFTKDQQYRPVVQ 146
Query: 110 YEPELFPGLIYR--MKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE+FPGLI+R Q KI LLIFVSG+ VITG K ++ F+ I P+L +F+K
Sbjct: 147 YEPEIFPGLIFRKITDQKKITLLIFVSGRCVITGGKKTEDLNNVFKFILPILDQFKK 203
>gi|298710178|emb|CBJ26253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 38/188 (20%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------------V 47
S+ N+ +T ++ C +DLK + ++ARNAEYNPK V
Sbjct: 134 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVV 193
Query: 48 CTGAKSEQQSKLAARKYARIIQKL----GFPAK------FKDFKIQNIVGSCDVKFPIRL 97
TG++S A + +ARI+ KL G P+ +D ++QN+V + DV FPIRL
Sbjct: 194 VTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRL 253
Query: 98 EGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156
EGL A + G F +YEPELFPGLIYRMK PKI LIFVSGK+V+TGAK + F+ +Y
Sbjct: 254 EGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMY 313
Query: 157 PVLTEFRK 164
P L +F+K
Sbjct: 314 PTLCQFKK 321
>gi|126723804|gb|ABO26816.1| TATA-box binding protein, partial [Perna canaliculus]
Length = 111
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 79/110 (71%), Gaps = 24/110 (21%)
Query: 27 CKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAAR 62
CKLDLK+IAL ARNAEYNPK VCTGAKSE Q+KLAAR
Sbjct: 2 CKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAAR 61
Query: 63 KYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
KYARI+QKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSYEP
Sbjct: 62 KYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
H + Y P+ F +I R++ P+ LIF SGK+V TGAK D+ A
Sbjct: 12 HARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLA 59
>gi|398412558|ref|XP_003857600.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
gi|339477485|gb|EGP92576.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
Length = 177
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 25/173 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V N+V+ VNL+C+LDLK IAL RNA Y PK G
Sbjct: 5 VHNVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIVGT 64
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KS ++LA RK+AR++QKLG+ +F+DF +QN+V + D + I LEGL + G +YE
Sbjct: 65 KSVDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGLMLTPGT-HNYE 123
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PELFPG +RM P + L+F SGK+V+ AK ++ + A++ YP+L +FRK
Sbjct: 124 PELFPGAAFRMVDPLVTFLVFHSGKVVLLKAKNEEDMHEAWDKFYPLLMQFRK 176
>gi|367044928|ref|XP_003652844.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
gi|347000106|gb|AEO66508.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
Length = 224
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V+TVNLDC+LDL IA QARN EY K V GA
Sbjct: 48 IQNVVATVNLDCRLDLTLIAQQARNVEYRRKKFHALVMRIREPRTTTLVFASGRMVVAGA 107
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KS + ++LAAR++AR IQK GF +F+DF +QN VGS FPIRLEG+A + ++ +E
Sbjct: 108 KSAELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGIARQYWEWARHE 167
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
PE+FPGL++ +++P + L+F +GK+V+TGAK D+ + AF +YPVL +++
Sbjct: 168 PEIFPGLVFTVQKPSLKCLVFTTGKVVLTGAKCEDDVHEAFAYLYPVLLDYK 219
>gi|1078776|pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 24/171 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VS L KL+L+KI +A NA YNPK VCTG +S
Sbjct: 57 NVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 116
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
++SK+A++KYA+II+K+G+P + +F +QNIVGSCDVKF I L L S AF YEPE
Sbjct: 117 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSDLAFCQYEPE 176
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+FPGL+YRM PK+ LL+F +GK+V+TGAK + A++NIYP+L RK
Sbjct: 177 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRK 227
>gi|116202165|ref|XP_001226894.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88177485|gb|EAQ84953.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 84
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 84 NIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
NIVGSCD+KFPIRLEGLA H FSSYEPELFPGLIYRM +PKIVLLIFVSGKIV+TGAK
Sbjct: 3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 62
Query: 144 VRDETYTAFENIYPVLTEFRKV 165
VR+E Y AFE IYPVL +FRKV
Sbjct: 63 VREEIYQAFEMIYPVLQDFRKV 84
>gi|195035138|ref|XP_001989048.1| GH10255 [Drosophila grimshawi]
gi|193905048|gb|EDW03915.1| GH10255 [Drosophila grimshawi]
Length = 314
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L+ IAL+ N EY + CTGA
Sbjct: 26 ITNVVCSFSVRCHLNLQNIALKGSNVEYRRENGMLTMRLRRPYTTASIWSSGRITCTGAI 85
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YARI++ LGFP +F+ F++ N++ +C + +PI++ + + +SYEP
Sbjct: 86 SEMQAKVAARRYARILEHLGFPVRFQSFRVVNVLATCCMPWPIKIVNFSMHNREMASYEP 145
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
EL+PG+ YRM+ PK L IF +G I +T A V + TA + IYP++ EFR V+
Sbjct: 146 ELYPGVTYRMRNPKATLRIFSTGNITVTAASV-NAVETAVQRIYPLVNEFRSVR 198
>gi|149047098|gb|EDL99818.1| TATA box binding protein, isoform CRA_b [Rattus norvegicus]
Length = 262
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 94/160 (58%), Gaps = 42/160 (26%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKVCTGAKSEQQSKLAARKYARIIQK 70
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK ++A +I +
Sbjct: 139 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPK----------------RFAAVIMR 182
Query: 71 LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF-----SSYEPELFPGLIYRMKQP 125
+ P R L +S G SYEPELFPGLIYRM +P
Sbjct: 183 IREP---------------------RTTALIFSSGKMVCTGAKSYEPELFPGLIYRMIKP 221
Query: 126 KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 222 RIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 261
>gi|16741283|gb|AAH16476.1| TATA box binding protein [Mus musculus]
gi|148688515|gb|EDL20462.1| TATA box binding protein, isoform CRA_c [Mus musculus]
Length = 260
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 94/160 (58%), Gaps = 42/160 (26%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKVCTGAKSEQQSKLAARKYARIIQK 70
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK ++A +I +
Sbjct: 137 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPK----------------RFAAVIMR 180
Query: 71 LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF-----SSYEPELFPGLIYRMKQP 125
+ P R L +S G SYEPELFPGLIYRM +P
Sbjct: 181 IREP---------------------RTTALIFSSGKMVCTGAKSYEPELFPGLIYRMIKP 219
Query: 126 KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L FRK
Sbjct: 220 RIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 259
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis]
gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis]
Length = 656
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 265 INNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWSSGRITCTGAT 324
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR + KLGFP F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 325 SESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 384
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M++PK L IF +G I +T A V D +A ++IYP++ EFRK
Sbjct: 385 ELHPGVTYKMREPKATLKIFSTGSITVTAASVND-VESAIQHIYPLVHEFRK 435
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis]
gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis]
Length = 711
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 282 INNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWSSGRITCTGAT 341
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR + KLGFP F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 342 SESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 401
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M++PK L IF +G I +T A V D +A ++IYP++ EFRK
Sbjct: 402 ELHPGVTYKMREPKATLKIFSTGSITVTAASVND-VESAIQHIYPLVHEFRK 452
>gi|367033977|ref|XP_003666271.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
gi|347013543|gb|AEO61026.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
Length = 242
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 25/179 (13%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V +++N+V+T +L+C+LDL+ IA ARN EYN + V
Sbjct: 51 VPTIQNVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFASGRMVV 110
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
TGAKS ++LAAR++AR IQK GFP + DF++QN VGS F +RLE +++ + +
Sbjct: 111 TGAKSAGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISHRYWQSA 170
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
+EPELFPGL+Y M +P + L+F +GK+V+TGAK R++ + AF N+YP+L E KV+Q
Sbjct: 171 RHEPELFPGLVYTMVRPSLKCLVFTTGKVVLTGAKKREDVFEAFANLYPLLLEA-KVEQ 228
>gi|301113196|ref|XP_002998368.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262111669|gb|EEY69721.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 220
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 28 KLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARK 63
++D+KK+AL RNA+Y P+ V GA S +KLAA K
Sbjct: 39 RVDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRSGKFVVIGATSVADAKLAAEK 98
Query: 64 YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK 123
I++K+ FP+ F I+N+VGS DV F +RLEGLA H FS+YEPELFPGLIYRM
Sbjct: 99 LVSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIYRML 158
Query: 124 QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+PK LLIF+SGK+VITG + + A IYPVL ++R
Sbjct: 159 RPKCTLLIFISGKLVITGCESSADGERALGAIYPVLLQYR 198
>gi|440294161|gb|ELP87178.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 112/172 (65%), Gaps = 25/172 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L+ +LDL+KI +ARNAEYNPK VCTG +S
Sbjct: 56 NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 115
Query: 54 EQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++SK+AA+KYA+II+K+G+ +F +F +QNIVGSCDVKF I L L S+ YEP
Sbjct: 116 IEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYEP 175
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E+FPGL++RM QPK+ LL+F +GK+V+TGAK + TA+ IYP+L +K
Sbjct: 176 EVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKK 227
>gi|440298942|gb|ELP91557.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 112/172 (65%), Gaps = 25/172 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
N+VST L+ +LDL+KI +ARNAEYNPK VCTG +S
Sbjct: 56 NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 115
Query: 54 EQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++SK+AA+KYA+II+K+G+ +F +F +QNIVGSCDVKF I L L S+ YEP
Sbjct: 116 IEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYEP 175
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E+FPGL++RM QPK+ LL+F +GK+V+TGAK + TA+ IYP+L +K
Sbjct: 176 EVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKK 227
>gi|171691522|ref|XP_001910686.1| hypothetical protein [Podospora anserina S mat+]
gi|170945709|emb|CAP71822.1| unnamed protein product [Podospora anserina S mat+]
Length = 223
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 34/185 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ ++N V TVNLDC++DL +A +ARN EY P+ V
Sbjct: 28 IPKLQNFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGRMVV 87
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF- 107
TGAKSE ++LAA+K+ +QK GF KF+DF +QNI+GS +V F IRLEGLA +
Sbjct: 88 TGAKSEALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYVTVG 147
Query: 108 SSYEPELFPGLIYRM-------KQPKI--VLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
+S+ PE+FPGL ++ P+ LLIF +GKIV+TGAK ++ AF +YP+
Sbjct: 148 ASFVPEIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKIVVTGAKTEEDFRAAFARVYPL 207
Query: 159 LTEFR 163
+FR
Sbjct: 208 FFDFR 212
>gi|195044570|ref|XP_001991843.1| GH11849 [Drosophila grimshawi]
gi|193901601|gb|EDW00468.1| GH11849 [Drosophila grimshawi]
Length = 689
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 214 INNVVCSFSVRCHLKLREIALNGSNVEYRRENGMVTMKLRRPYTTASIWSSGRITCTGAT 273
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR + KLGFP F+ F+I N++G+C + + I++ + H +SYEP
Sbjct: 274 SELQAKIAARRYARCLGKLGFPTHFQHFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 333
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M++PK L IF +G I +T V D +A ++IYP++ EFRK
Sbjct: 334 ELHPGVTYKMREPKATLKIFSTGSITVTAPTVND-VESAIQHIYPLVHEFRK 384
>gi|348669793|gb|EGZ09615.1| hypothetical protein PHYSODRAFT_522103 [Phytophthora sojae]
Length = 216
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 28 KLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARK 63
K++++K+AL RNA+Y P+ V GA S SKLAA K
Sbjct: 42 KVNIEKLALLVRNADYAPRSFSALVMRFQEPRATVLVYRSGKFVVIGATSVDDSKLAADK 101
Query: 64 YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK 123
I +K+ FP+ F ++N+VGS DV F IRLEGLA H FS+YEPE+FPGLIYRM
Sbjct: 102 LVSIFKKVSFPSDCSPFTVRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRML 161
Query: 124 QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+PK LLIF+SGKIVITG + + A I+PVL ++R
Sbjct: 162 RPKCTLLIFISGKIVITGCESPAQGEKALGKIFPVLLQYR 201
>gi|403220982|dbj|BAM39115.1| transcription initiation factor [Theileria orientalis strain
Shintoku]
Length = 276
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 114/197 (57%), Gaps = 33/197 (16%)
Query: 1 MLPYICYLILGAVSS-----VKNIVSTVNLDCKLDLKKIALQARNAEYNPK--------- 46
M Y C+L S+ V+NIV++V+L +LDL++IA+ RNAEYNPK
Sbjct: 80 MSKYSCFLKANYQSNMCIPMVQNIVASVHLGQELDLREIAISTRNAEYNPKKFNALVLRM 139
Query: 47 ---------------VCTGAKSEQQSKLAARKYARIIQK-LGFPAKFKDFKIQNIVGSCD 90
+ TG+K+ + +KL A++ A++I+K LG KF +FKI+NI+ + +
Sbjct: 140 QNPKCTGLIFRTGRIIITGSKTIEDTKLGAKRMAKMIRKELGADLKFNNFKIENIIATFN 199
Query: 91 VKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDE 147
PIRLE + H S+YEPE F GL+YR + + VLLIFVSG ++ITG K E
Sbjct: 200 CNVPIRLEVFSQEHKELSNYEPEFFAGLVYRCRISESSEAVLLIFVSGNVIITGCKSAHE 259
Query: 148 TYTAFENIYPVLTEFRK 164
F+ +YP+L +++K
Sbjct: 260 IQYVFKTMYPILQQYQK 276
>gi|325185920|emb|CCA20424.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 203
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 25/178 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQA-RNAEYNPK-----------------------VCTG 50
+KN+V + NL + DL + +++ + AE PK V TG
Sbjct: 10 DIKNVVCSANLGMRFDLTDLLIKSQKRAELVPKKNCILMKIPSPDTTAMLFSNGKLVVTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
A SE Q K AARK+ +IIQK+ +P DFKI+NI+G+CDV F I +E A +H +
Sbjct: 70 ANSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRILMEKFAAAHASRCI 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
YEPEL+P LIYR+ P + +L+FVSGK+V TG+K + + A E IYP+L +F +Q
Sbjct: 130 YEPELYPALIYRLAHPSVKILVFVSGKVVFTGSKDPRDLHAACEQIYPLLVQFEDKKQ 187
>gi|118638415|gb|ABL09366.1| TATA-box binding protein alternative transcript cTBP2 [Gallus
gallus]
Length = 81
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 69/79 (87%)
Query: 86 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145
VGSCDVKFPIRLEGL +H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR 60
Query: 146 DETYTAFENIYPVLTEFRK 164
E Y AFENIYP+L FRK
Sbjct: 61 AEIYEAFENIYPILKGFRK 79
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis]
gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis]
Length = 987
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IAL+ N EY + CTGA
Sbjct: 503 INNVVCSFSVRCHLKLRDIALRGCNVEYRRENGMVTMKLRRPYTTASIWSSGRITCTGAT 562
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 563 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 622
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+MK PK L IF +G I +T A V D +A ++IYP++ EFRK
Sbjct: 623 ELHPGVTYKMKMPKATLKIFSTGSITVTAASVND-VESAIQHIYPLVHEFRK 673
>gi|195114322|ref|XP_002001716.1| GI15474 [Drosophila mojavensis]
gi|193912291|gb|EDW11158.1| GI15474 [Drosophila mojavensis]
Length = 442
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 93 INNVVCSFSVRCHLKLREIALHGSNVEYRRENGMVTMRLRRPYTTASIWSSGRITCTGAI 152
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR + KLGFP +F+ F+I N++G+C + +PIR+ + H + YEP
Sbjct: 153 SESQAKVAARRYARSLSKLGFPVRFQQFRIVNVLGTCSMPWPIRIVNFSERHRESACYEP 212
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL PG+ ++M+ PK L IF +G I +T A V + +A + +YP++ EFR
Sbjct: 213 ELHPGVTFKMQDPKATLKIFSTGSITVTAASV-NAVESAIQRLYPLVHEFR 262
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
Length = 1037
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IAL+ N EY + CTGA
Sbjct: 554 INNVVCSFSVRCHLKLRDIALRGCNVEYRRENGMVTMKLRRPYTTASIWSSGRITCTGAT 613
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 614 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 673
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+MK PK L IF +G I +T A V D +A ++IYP++ EFRK
Sbjct: 674 ELHPGVTYKMKMPKATLKIFSTGSITVTAASVND-VESAIQHIYPLVHEFRK 724
>gi|242247621|ref|NP_001156189.1| TATA-box-binding protein-like [Acyrthosiphon pisum]
gi|239791994|dbj|BAH72388.1| ACYPI005546 [Acyrthosiphon pisum]
Length = 331
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 24/174 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNP------------------------KVCTGA 51
V+NIV N+ C LDL +I + N+EYNP + GA
Sbjct: 158 VQNIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLIMRLRTPNVTSLLFPSGKMIMQGA 217
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
K ++ L RK A+I+++LG KF D+ + NIV + DV FPI LE L +H F+S+E
Sbjct: 218 KDDRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSFE 277
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE+FP LIYRM +P+ V L+FV+GK+V+TG K + + + + VL F+K
Sbjct: 278 PEVFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKSDIKESVFLMQDVLNSFKKT 331
>gi|328705141|ref|XP_001943046.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Acyrthosiphon pisum]
Length = 343
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 24/179 (13%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V+NIV N+ C LDL +I + N+EYNP+
Sbjct: 165 GQSIQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLIMRLRTPNVTSLLFPSGKM 224
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
+ GAK ++ L RK A+I+++LG +F D+ + NIV + DV FPI LE L +H
Sbjct: 225 IMQGAKDDRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIMLEELNTAHSQ 284
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F+S+EPE+FP LIYRM +P+ V L+FV+GK+V+TG K + + + + VL FRK
Sbjct: 285 FTSFEPEVFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKADIKESVFLMQDVLNNFRKT 343
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni]
gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni]
Length = 1222
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 734 INNVVCSFSVRCHLKLREIALHGANVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 793
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 794 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 853
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M++PK L IF +G I +T A V D A ++IYP+ EFRK
Sbjct: 854 ELHPGVTYKMREPKATLKIFSTGSITVTAASVND-VEAAIQHIYPLAYEFRK 904
>gi|195386532|ref|XP_002051958.1| GJ17285 [Drosophila virilis]
gi|194148415|gb|EDW64113.1| GJ17285 [Drosophila virilis]
Length = 387
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IAL N EY + CTGA
Sbjct: 54 INNVVCSFSVRCHLKLREIALHGSNVEYRRENGMVTMRLRRPYTTASIWSSGRITCTGAI 113
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR + KLGFP F++F+I N++G+C + + IR+ + H +SYEP
Sbjct: 114 SEPQAKVAARRYARSLGKLGFPVHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNASYEP 173
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL PG+ Y+M+ PK + IF +G I +T A V + +A + +YP++ EFR
Sbjct: 174 ELHPGVTYKMRDPKATMKIFSTGSITVTAASV-NAVESAIQRLYPLVHEFR 223
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae]
gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae]
Length = 1683
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IAL N EY + CTGA
Sbjct: 1245 INNVVCSFSVRCHLKLRDIALNGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 1304
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F++F+I N++G+C + + I++ + H +SYEP
Sbjct: 1305 SEPMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 1364
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G I +T A V D A ++I+P++ EFRK
Sbjct: 1365 ELHPGVTYKMRDPKATLKIFSTGSITVTAASVND-VEAAIQHIFPLVFEFRK 1415
>gi|390986539|gb|AFM35789.1| hypothetical protein, partial [Oryza eichingeri]
Length = 88
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/64 (95%), Positives = 62/64 (96%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
VCTGAKSE SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA
Sbjct: 25 VCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 84
Query: 107 FSSY 110
FSSY
Sbjct: 85 FSSY 88
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
F +I R+++PK LIF SGK+V TGAK D + A
Sbjct: 2 FAAVIMRIREPKTTALIFASGKMVCTGAKSEDHSKLA 38
>gi|56755940|gb|AAW26148.1| SJCHGC04294 protein [Schistosoma japonicum]
Length = 99
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 69/80 (86%)
Query: 85 IVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144
+VGSCDV+F IRLEGL S G F++YEPELFPGLIYRM +PKIVLL+FVSGKIV+TGAKV
Sbjct: 1 MVGSCDVRFHIRLEGLVLSQGQFATYEPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKV 60
Query: 145 RDETYTAFENIYPVLTEFRK 164
R+E Y AF NIYP+L F+K
Sbjct: 61 REEIYEAFNNIYPILKNFKK 80
>gi|332031263|gb|EGI70797.1| TATA box-binding protein-like protein 1 [Acromyrmex echinatior]
Length = 401
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 174 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 233
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 234 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENADYEP 293
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E+IYP++ EFRK
Sbjct: 294 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEHIYPLVYEFRK 344
>gi|392522653|gb|AFM78115.1| TATA box-binding protein, partial [Skeletonema costatum]
Length = 114
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA RK+A I++++GF PA DFK+QNIVG+ DV FPIRLEGL Y+H
Sbjct: 26 VVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFKVQNIVGTVDVGFPIRLEGLVYAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++VLLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|442615484|ref|NP_001259329.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
gi|440216531|gb|AGB95174.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
Length = 1714
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IALQ N EY + CTGA
Sbjct: 1286 INNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 1345
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 1346 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 1405
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 1406 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 1458
>gi|24640580|ref|NP_511084.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45554500|ref|NP_996377.1| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
gi|17862444|gb|AAL39699.1| LD27895p [Drosophila melanogaster]
gi|22831945|gb|AAF46368.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45446857|gb|AAF46369.3| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
Length = 632
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IALQ N EY + CTGA
Sbjct: 204 INNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 263
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 264 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 323
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 324 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 376
>gi|4741972|gb|AAD28784.1|AF136569_1 TATA box binding protein-related factor 2 [Drosophila melanogaster]
Length = 632
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IALQ N EY + CTGA
Sbjct: 204 INNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 263
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 264 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 323
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 324 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 376
>gi|161077628|ref|NP_001096905.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|281360601|ref|NP_001162701.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|442615486|ref|NP_001259330.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
gi|76446337|gb|ABA42953.1| TRF2 [Drosophila melanogaster]
gi|158031744|gb|ABW09355.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|272506032|gb|ACZ95236.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|440216532|gb|AGB95175.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
Length = 1715
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IALQ N EY + CTGA
Sbjct: 1287 INNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 1346
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 1347 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 1406
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 1407 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 1459
>gi|4688680|emb|CAB41475.1| TBP-like factor [Drosophila melanogaster]
Length = 537
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L++IALQ N EY + CTGA
Sbjct: 109 INNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 168
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 169 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 228
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 229 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 281
>gi|427787417|gb|JAA59160.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 321
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL A N EY + CTGA
Sbjct: 84 INNVVCSFSVRCHLNLRQIALTASNVEYRRENGMLTMKIRTPYTTASMWSSGKVTCTGAT 143
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+ +KLAAR+YARI+QKLGF KF ++++ N++G+C + F I+L + S+ +SYEP
Sbjct: 144 SEETAKLAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQSNRPIASYEP 203
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K K L IF +G I +T V + +A E I+P++ E+RK
Sbjct: 204 ELHPGVTYKIKDLKATLKIFSTGSITVTAPSVAN-VQSAIEQIFPLVYEYRK 254
>gi|405976239|gb|EKC40752.1| TATA box-binding-like protein 1 [Crassostrea gigas]
Length = 280
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + N C L+L+ IA++ + EY + VCTGA
Sbjct: 51 INNVVCSFNTRCHLNLRSIAMEGSHVEYRREQSMVNMKIRRPYTTATIWSSGKIVCTGAT 110
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE++SK+AARK+AR +Q+LG+ F +F++ N++G+C + F I++ G + H +SYEP
Sbjct: 111 SEEESKIAARKFARKLQRLGYKVTFTNFRVVNVLGTCGMPFRIKIAGFSQKHPKDASYEP 170
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL PG+ Y++K PK L IF +G I +T V + A E+I+P+++EF+
Sbjct: 171 ELHPGVTYKIKDPKATLKIFSTGSITVTAPCVAN-VQAAIEHIFPLVSEFK 220
>gi|392522721|gb|AFM78149.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA RK+A I++++GF PA DFK+QNIVG+ DV FPIRLEGL ++H
Sbjct: 26 VVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFKVQNIVGTVDVGFPIRLEGLVFAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++VLLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|300120388|emb|CBK19942.2| unnamed protein product [Blastocystis hominis]
Length = 199
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 28/181 (15%)
Query: 13 VSSVK--NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
+S+VK NIVSTVN+ +++L ++ + RN EYNPK
Sbjct: 19 LSTVKPSNIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMIMRIREPKCTALVFKSGKV 78
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK--IQNIVGSCDVKFPIRLEGLAYSH 104
V G KS + ++ A R+ I+ + K D K I N+V D KFPIRLEGL+ +
Sbjct: 79 VLAGTKSTKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEY 138
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
++YEPELF GLIYRMK P +VLLIFVSGK+V+TGAK + AF I P++ RK
Sbjct: 139 LESTTYEPELFSGLIYRMKNPDVVLLIFVSGKVVVTGAKDESDIRQAFRKISPLIYNCRK 198
Query: 165 V 165
V
Sbjct: 199 V 199
>gi|322796560|gb|EFZ19034.1| hypothetical protein SINV_07503 [Solenopsis invicta]
Length = 303
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL+ N EY + CTGA
Sbjct: 79 INNVVCSFSVRCHLNLREIALKGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 138
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 139 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENADYEP 198
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K PK L IF +G + +T V A E+IYP++ EFRK
Sbjct: 199 ELHPGVTYKLKDPKATLKIFSTGSVTVTAPNVA-AVQAAIEHIYPLVYEFRK 249
>gi|301103642|ref|XP_002900907.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
gi|262101662|gb|EEY59714.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
Length = 163
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGA++E K AAR++ ++IQK+ FP DFKIQN+VG+CD+ F + +E LA++H
Sbjct: 45 VCTGAETEDAIKNAARRFTQVIQKMDFPGVNLIDFKIQNVVGTCDMGFRVLVEALAFAHS 104
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
+YEPEL+P LIYR+++P++ +L+FVSGK+V T +K E Y+A E I+PV
Sbjct: 105 DRCTYEPELYPALIYRLEKPQVKVLVFVSGKVVFTDSKEPRELYSACEAIFPV 157
>gi|194891201|ref|XP_001977450.1| GG18249 [Drosophila erecta]
gi|190649099|gb|EDV46377.1| GG18249 [Drosophila erecta]
Length = 641
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IALQ N EY + CTGA
Sbjct: 219 INNVVCSFSVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 278
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 279 SEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 338
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V +A ++IYP++ +FRK
Sbjct: 339 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-SHVESAIQHIYPLVFDFRK 391
>gi|241239027|ref|XP_002401459.1| TATA-box-binding protein, putative [Ixodes scapularis]
gi|215496181|gb|EEC05822.1| TATA-box-binding protein, putative [Ixodes scapularis]
Length = 316
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL A N EY + CTGA
Sbjct: 75 INNVVCSFSVRCHLNLRQIALTATNVEYRRENGMLTMKIRAPYTTASMWSSGKVTCTGAT 134
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+ +K+AAR+YARI+QKLGF KF ++++ N++G+C + F I+L + + +SYEP
Sbjct: 135 SEETAKMAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQHNRGLASYEP 194
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K K L IF +G I +T V + A E+I+P++ EFRK
Sbjct: 195 ELHPGVTYKIKDLKATLKIFSTGSITVTAPSVGN-VQQAIEHIFPLVYEFRK 245
>gi|328791980|ref|XP_396371.4| PREDICTED: TATA box binding protein-related factor 2 isoform 1
[Apis mellifera]
Length = 306
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 123
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 124 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYEP 183
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 184 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEYIYPLVYEFRK 234
>gi|156083957|ref|XP_001609462.1| TATA-box binding protein [Babesia bovis T2Bo]
gi|154796713|gb|EDO05894.1| TATA-box binding protein [Babesia bovis]
Length = 277
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 107/177 (60%), Gaps = 28/177 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++V+L ++DL++IA+ RNAEYNP+ + TG
Sbjct: 101 VQNIVASVHLGNEIDLREIAISTRNAEYNPRKFNALILRMQNPRCTGLVFRTGRLIVTGC 160
Query: 52 KSEQQSKLAARKYARIIQK-LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K+ + ++L A++ A+++++ LG +F DFKI+NI+ + + PIRLE L H F +Y
Sbjct: 161 KTVESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFCNY 220
Query: 111 EPELFPGLIYRMKQP---KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPE+F GL+YR+ P + VLL+FVSG +++TG + ++ Y + + P+L EF+
Sbjct: 221 EPEIFAGLVYRIAIPCKSEAVLLVFVSGNVIVTGCRSPEDIYLIYRRMAPILCEFKH 277
>gi|380016952|ref|XP_003692431.1| PREDICTED: TATA box-binding protein-like protein 1-like [Apis
florea]
Length = 304
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 123
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 124 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYEP 183
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 184 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEYIYPLVYEFRK 234
>gi|350399828|ref|XP_003485652.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
impatiens]
Length = 290
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 123
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 124 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYEP 183
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 184 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEYIYPLVYEFRK 234
>gi|340712494|ref|XP_003394794.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
terrestris]
Length = 290
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 123
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 124 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYEP 183
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 184 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEYIYPLVYEFRK 234
>gi|221057235|ref|XP_002259755.1| transcription initiation factor TFiid,TATA-binding protein
[Plasmodium knowlesi strain H]
gi|193809827|emb|CAQ40531.1| transcription initiation factor TFiid,TATA-binding protein,
putative [Plasmodium knowlesi strain H]
Length = 250
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 100/176 (56%), Gaps = 28/176 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ NI+++ NL +DL+ +A+ RNAEYNP + TG
Sbjct: 74 IHNIIASANLSVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGT 133
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K++ + +K +II+ + P K + F I+NI+ S D PIRLE LA+ H + +Y
Sbjct: 134 KTKADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNY 193
Query: 111 EPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPELF GL+YR K + K V+LIFVSGKI+ITG K + YT F++IY VL ++R
Sbjct: 194 EPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVLLQYR 249
>gi|195480136|ref|XP_002101150.1| GE15780 [Drosophila yakuba]
gi|194188674|gb|EDX02258.1| GE15780 [Drosophila yakuba]
Length = 1872
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 99/174 (56%), Gaps = 26/174 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IALQ N E+ + CTGA
Sbjct: 1445 INNVVCSFSVGCHLKLRDIALQGSNVEFRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 1504
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 1505 SEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 1564
Query: 113 ELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+M+ PK L IF +G + +T A V +A ++IYP++ +FRK
Sbjct: 1565 ELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-SHVESAIQHIYPLVFDFRK 1617
>gi|348686462|gb|EGZ26277.1| hypothetical protein PHYSODRAFT_484921 [Phytophthora sojae]
Length = 161
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGA++E+ K AR++ ++IQK+ FP DFKIQN+VG+CD+ F + +E +A++H
Sbjct: 45 VCTGAETEEAIKNVARRFTQVIQKMDFPGVNLIDFKIQNVVGTCDLGFRVLVEAIAFAHS 104
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
+YEPEL+P LIYR+ +P++ +L+FVSGK+V T +K E Y A E IYPV
Sbjct: 105 DCCTYEPELYPALIYRLDKPQVKVLVFVSGKVVFTDSKEPRELYAACEAIYPV 157
>gi|307191585|gb|EFN75083.1| TATA box-binding protein-like protein 1 [Harpegnathos saltator]
Length = 297
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL+ N EY + CTGA
Sbjct: 73 INNVVCSFSVRCHLNLREIALKGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 132
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 133 SEVQAKIAARRFARSLQKLGFQVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKENAEYEP 192
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 193 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVAS-VQAAIEYIYPLVYEFRK 243
>gi|379994425|gb|AFD22839.1| TATA-box-binding protein, partial [Collodictyon triciliatum]
Length = 80
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 76 KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135
+F DFKIQNIVGSCDV FPIRLEGLA+ H ++ SYEPELFPGLIYRM++PKIVLLIFVSG
Sbjct: 3 RFLDFKIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSG 62
Query: 136 KIVITGAKVRDETYTAFE 153
KIV+TGAK R + F+
Sbjct: 63 KIVLTGAKTRLDITRGFQ 80
>gi|383852426|ref|XP_003701729.1| PREDICTED: TATA box-binding protein-like protein 1-like [Megachile
rotundata]
Length = 295
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 69 INNVVCSFSVRCHLNLREIALNGSNVEYRRESGMITMKLRRPYTTASIWSSGKVTCTGAT 128
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 129 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSLYHKENADYEP 188
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+PK L IF +G + +T V A E IYP++ EFRK
Sbjct: 189 ELHPGVTYKLKEPKATLKIFSTGSVTVTAPNVA-AVQAAIEYIYPLVYEFRK 239
>gi|71033019|ref|XP_766151.1| transcription initiation factor TFIID [Theileria parva strain
Muguga]
gi|68353108|gb|EAN33868.1| transcription initiation factor TFIID, putative [Theileria parva]
Length = 222
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 28/179 (15%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V V+NIV++V+L +LDL++IA+ RNAEYNPK +
Sbjct: 43 VPMVQNIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIII 102
Query: 49 TGAKSEQQSKLAARKYARIIQK-LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TG+K+ + ++L ++ A++I+K G KF +FKI+NI+ + PIRLE + H
Sbjct: 103 TGSKTIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDL 162
Query: 108 SSYEPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+YEPE F GL+YR + + + VLLIFVSG ++ITG K E F+ +YP+L +++
Sbjct: 163 CNYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSAQEIQYVFKTMYPILHQYQ 221
>gi|195964300|gb|ACG60161.1| TATA binding protein [Notothenia coriiceps]
Length = 171
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 72/102 (70%), Gaps = 24/102 (23%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 70 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 129
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 88
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGS
Sbjct: 130 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 171
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 74 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 132
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 133 GAKSEEQSRLA 143
>gi|392522723|gb|AFM78150.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA RK+A I++++GF A DFK+QNIVG+ DV FPIRLEGL ++H
Sbjct: 26 VVTGTKSTHNSALATRKFAYILERVGFQLAGMLDFKVQNIVGTVDVGFPIRLEGLVFAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++VLLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|291191925|gb|ADD83026.1| TATA box binding protein [Gobiocypris rarus]
Length = 224
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 71/101 (70%), Gaps = 24/101 (23%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 124 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 183
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 87
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VG
Sbjct: 184 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 224
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 186
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 187 GAKSEEQSRLA 197
>gi|428671167|gb|EKX72085.1| transcription factor TFIID or TATA-binding protein, TBP, putative
[Babesia equi]
Length = 304
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 106/178 (59%), Gaps = 29/178 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++V+L +LDL++IA+ RNAEYNPK + TG+
Sbjct: 127 VQNIVASVHLGRELDLREIAISTRNAEYNPKKFNALVLRMHNPKCTGLIFRTGRIIITGS 186
Query: 52 KSEQQSKLAARKYARIIQKL--GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
++ + ++L A++ A+II+++ G F++FKI+NI+ + + PIRLE L+ H +
Sbjct: 187 RTTEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLSSEHEDLCN 246
Query: 110 YEPELFPGLIYRM---KQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE F GL++R + VLLIFVSG ++ITG K +E + F ++P+L +++
Sbjct: 247 YEPEFFAGLVFRFSLTDTSEAVLLIFVSGNVIITGCKSMEEVHHVFNTMHPILLRYQE 304
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti]
gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti]
Length = 584
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L+ IAL+ N E+ + CTGA
Sbjct: 291 INNVVCSFSVRCHLNLRDIALKGFNVEFRRENGMVTMKLRRPYTTASIWSSGKITCTGAT 350
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+Y+R +QKLGF +F++F+I N++G+C + + I + + + +SYEP
Sbjct: 351 SEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYEP 410
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++ PK L IF +G I +T A V A E+I+P++ EFRK
Sbjct: 411 ELHPGVTYKLYNPKATLKIFSTGSITVTAASVA-FVQAAIEHIFPLVYEFRK 461
>gi|158285534|ref|XP_308361.4| AGAP007517-PA [Anopheles gambiae str. PEST]
gi|157020038|gb|EAA04678.5| AGAP007517-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L IA N E+ + CTGA
Sbjct: 256 INNVVCSFSVRCHLNLHDIARHGHNVEFRREHGMVTMKLRRPYTTASIWSSGKITCTGAT 315
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+Y+R +QKLGF +F++F+I N++G+C + F I + + + +SYEP
Sbjct: 316 SEHQAKIAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPFGIMIVNFSEKYKKDASYEP 375
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++ PK L IF +G I +T A V A E I+P++ EFRK
Sbjct: 376 ELHPGVTYKLYSPKATLKIFSTGSITVTAASVA-FVQAAIEQIFPLVYEFRK 426
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium
castaneum]
gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum]
Length = 262
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 25/172 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY---NPKV--------------------CTGAK 52
+ N+V + ++ C L+L++IAL N EY N K+ CTGA
Sbjct: 55 INNVVCSFSVRCHLNLREIALNGINVEYRKENGKITMKLRRPYTTASIWSSGKVTCTGAT 114
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 115 SELQAKIAARRFARCLQKLGFKVRFNNYRVVNVLGTCSMPFAIKINSFSERHKE-ADYEP 173
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y+++ PK L IF +G + +T V D A E I+P++ EFRK
Sbjct: 174 ELHPGVTYKLQSPKATLKIFSTGSVTVTAPSVAD-VQAAIEYIFPLVYEFRK 224
>gi|8777983|gb|AAF79168.1| TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 71/107 (66%), Gaps = 24/107 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C LDLK+IALQARNAEYNPK VCTGAKSE+ S A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
AR+YAR+IQKLGFPAKF+DFKIQN+VGS DVKFPIRLE L H F
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R++ P+ LIF SGK+V TGAK +++ A
Sbjct: 17 AEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
>gi|153791987|ref|NP_001093265.1| TATA box binding protein-like 1 [Takifugu rubripes]
gi|148910859|tpg|DAA06040.1| TPA_inf: TATA box binding protein-like 1 [Takifugu rubripes]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V+T C L+L+ IAL+ N Y P+ +CTGA
Sbjct: 13 ISNVVATFRTRCHLNLRTIALEGNNVIYKPEQGTVTMKLRKPRITANIWSSGKIICTGAS 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++KL AR+ AR +QKLGF KF FK+ N++ C + F I L + ++YEP
Sbjct: 73 SEDEAKLGARRLARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL+P +Y M+QPK + +F +G + I G V D A +++YP+L+E R+
Sbjct: 133 ELYPAAMYTMRQPKATIKVFSTGSVTILGPSV-DNVAAAVQHVYPLLSECRR 183
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 289
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+LK+IA N EY + CTGA
Sbjct: 54 INNVVCSFSVRCHLNLKEIATHGANVEYRKENGMVTMKLRKPYTTASIWSSGKITCTGAT 113
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR++AR +QKLGF +F +F++ N++G+C + F I++ + + + YEP
Sbjct: 114 SEDNAKIAARRFARSLQKLGFEVRFNNFRVVNVLGTCSMPFGIKINSFSAKYPKQAEYEP 173
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E+ PG+ YR+K PK L IF +G I +T V A E+IYP++ EF+K
Sbjct: 174 EIHPGVTYRLKDPKATLKIFSTGSITVTAPCV-SSIAAAIEHIYPLVYEFKK 224
>gi|195355070|ref|XP_002044016.1| GM21561 [Drosophila sechellia]
gi|194129269|gb|EDW51312.1| GM21561 [Drosophila sechellia]
Length = 278
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 26/166 (15%)
Query: 24 NLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAKSEQQSKLA 60
++ C L L+ IALQ N EY + CTGA SE +K+A
Sbjct: 7 SVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVA 66
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIY 120
AR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEPEL PG+ Y
Sbjct: 67 ARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTY 126
Query: 121 RMK--QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+M+ PK L IF +G + +T A V + +A ++IYP++ +FRK
Sbjct: 127 KMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 171
>gi|195964298|gb|ACG60160.1| TATA binding protein [Chaenocephalus aceratus]
Length = 173
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 71/102 (69%), Gaps = 24/102 (23%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIV TVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 72 GIVPQLQNIVPTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 131
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 88
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGS
Sbjct: 132 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 76 QLQNIVPTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 134
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 135 GAKSEEQSRLA 145
>gi|8777977|gb|AAF79165.1|AF249988_1 TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 70/107 (65%), Gaps = 24/107 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C LDLK+IALQARNAEYNPK VCTGAKSE S A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
AR+YAR+IQKLGFPAKF+DFKIQN+VGS DVKFPIRLE L H F
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R++ P+ LIF SGK+V TGAK +++ A
Sbjct: 17 AEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
>gi|8777979|gb|AAF79166.1| TATA-box binding protein 2 [Macrotrachela quadricornifera]
gi|8777981|gb|AAF79167.1| TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 70/107 (65%), Gaps = 24/107 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C LDLK+IALQARNAEYNPK VCTGAKSE S A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
AR+YAR+IQKLGFPAKF+DFKIQN+VGS DVKFPIRLE L H F
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R++ P+ LIF SGK+V TGAK + + A
Sbjct: 17 AEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus]
Length = 314
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 25/172 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N E+ + CTGA
Sbjct: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTCTGAT 150
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+YAR +QKLGF +F++F++ N++G+C + F IR+ + + + YEP
Sbjct: 151 SEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKE-ADYEP 209
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++ PK L IF +G + IT V D +A E I+P++ EFRK
Sbjct: 210 ELHPGVTYKLYNPKATLKIFSTGGVTITARSVSD-VQSAVERIFPLVYEFRK 260
>gi|392522725|gb|AFM78151.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA +K A I++++GF P+ + +FK+QNIVG+ DV FPIRLEG+A++H
Sbjct: 26 VITGTKSSHNSGLATKKIAYILERVGFRPSSYINFKVQNIVGTVDVGFPIRLEGVAFAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++VLLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
F +I R+++P+ L+F SGKIVITG K + A + I +L
Sbjct: 3 FAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYIL 47
>gi|84998870|ref|XP_954156.1| transcription initiation factor (TBP ) [Theileria annulata]
gi|65305154|emb|CAI73479.1| transcription initiation factor (TBP homologue), putative
[Theileria annulata]
Length = 222
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 28/181 (15%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
++ V+NIV++V+L +LDL++IA+ RNAEYNP+ +
Sbjct: 42 SIPVVQNIVASVHLGEELDLREIAISTRNAEYNPRKFNALVLRMQNPKCTGLIFRTGRII 101
Query: 48 CTGAKSEQQSKLAARKYARIIQK-LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG+K+ + +KL ++ A++I+K G KF +FKI+NI+ + PIRLE + H
Sbjct: 102 ITGSKTIEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKD 161
Query: 107 FSSYEPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+YEPE F GL+YR + + + VLLIFVSG ++ITG K E F+ +YP+L +++
Sbjct: 162 LCNYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSPQEIQYVFKIMYPILHQYQ 221
Query: 164 K 164
Sbjct: 222 N 222
>gi|195964302|gb|ACG60162.1| TATA binding protein [Chionodraco rastrospinosus]
Length = 173
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 71/102 (69%), Gaps = 24/102 (23%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 72 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 131
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 88
VC GAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQN+VGS
Sbjct: 132 VCAGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V
Sbjct: 76 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCA 134
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 135 GAKSEEQSRLA 145
>gi|8777975|gb|AAF79164.1|AF249987_1 TATA-box binding protein 1 [Macrotrachela quadricornifera]
Length = 108
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 70/107 (65%), Gaps = 24/107 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C LDLK+IALQARNAEYNPK VCTGAKSE S A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
AR+YAR+IQKLGFPAKF+DFKIQN+VGS DVKFPIRLE L H F
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I ++ P+ LIF SGK+V TGAK +++ A
Sbjct: 17 AEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
>gi|392522763|gb|AFM78170.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
K+C TG KS S LAA+++A II+K+GF + DFK+QNIVG+ DV FP+RLEGL Y+H
Sbjct: 24 KMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKVQNIVGTVDVGFPVRLEGLVYAH 83
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
+SSYEPELFPGLIYR+ P++V LIFVS
Sbjct: 84 SMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|392522767|gb|AFM78172.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS + LA++K+A II+K+GF A DFK+QNIVG+ DV FPIRLEGL Y+
Sbjct: 24 KMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVDFKVQNIVGTADVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ QP++V+LIFVS
Sbjct: 84 HSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522651|gb|AFM78114.1| TATA box-binding protein, partial [Chaetoceros affinis]
gi|392522765|gb|AFM78171.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522771|gb|AFM78174.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522773|gb|AFM78175.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522777|gb|AFM78177.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS + LA++K+A II+K+GF A DFK+QNIVG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFKVQNIVGTADVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ QP++V+LIFVS
Sbjct: 84 HSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|224145966|ref|XP_002325830.1| predicted protein [Populus trichocarpa]
gi|222862705|gb|EEF00212.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 59/65 (90%)
Query: 103 SHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
S YEPE+FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF
Sbjct: 5 SRARLVQYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 64
Query: 163 RKVQQ 167
RKVQQ
Sbjct: 65 RKVQQ 69
>gi|307181017|gb|EFN68791.1| TATA box-binding protein-like protein 1 [Camponotus floridanus]
Length = 304
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 78 INNVVCSFSVRCHLNLREIALNGSNVEYRRENGMITMKLRRPYTTASIWSSGKVTCTGAT 137
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + YEP
Sbjct: 138 SEIQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITLFSVHHKENADYEP 197
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+ K L IF +G + +T V A E+IYP++ EFRK
Sbjct: 198 ELHPGVTYKLKELKATLKIFSTGSVTVTAPNVA-AVQAAIEHIYPLVYEFRK 248
>gi|392522731|gb|AFM78154.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA +K A I++++GF PA + +FK+QNIVG+ DV FPIRLEG+A++H
Sbjct: 26 VITGTKSSHNSSLATKKIAYILERIGFQPASYINFKVQNIVGTVDVGFPIRLEGVAFAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++ LLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
F +I R+++P+ L+F SGK VITG K + A + I +L
Sbjct: 3 FAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYIL 47
>gi|374719192|gb|AEZ67282.1| TBP, partial [Eidolon helvum]
gi|374719194|gb|AEZ67283.1| TBP, partial [Myotis daubentonii]
gi|374719196|gb|AEZ67284.1| TBP, partial [Pipistrellus sp. DR-2011]
Length = 96
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 68/94 (72%), Gaps = 24/94 (25%)
Query: 31 LKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYAR 66
LK IAL+ARNAEYNPK VCTGAKSE+QS+LAARKYAR
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 67 IIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGL 100
++QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 94
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R+++P+ LIF SGK+V TGAK +++ A
Sbjct: 11 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA 54
>gi|392522761|gb|AFM78169.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
K+C TG KS S LAA+++A II+K+GF + DFK+QN+VG+ DV FP+RLEGL Y+H
Sbjct: 24 KMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKVQNMVGTVDVGFPVRLEGLVYAH 83
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
+SSYEPELFPGLIYR+ P++V LIFVS
Sbjct: 84 SMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|347963631|ref|XP_001687775.2| AGAP000336-PA [Anopheles gambiae str. PEST]
gi|333467108|gb|EDO64342.2| AGAP000336-PA [Anopheles gambiae str. PEST]
Length = 533
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L+ IAL N E+ + CTGA
Sbjct: 248 INNVVCSFSVRCHLNLRDIALYGDNVEFRRENGMVTMKLRRPYTTASIWSSGKITCTGAT 307
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+Y+R +QKLGF + ++F+I N++G+C + + I++ + + +SYEP
Sbjct: 308 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYEP 367
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++ P+ L IF +G I +T A V A E+I+P++ EFRK
Sbjct: 368 ELHPGVTYKLHSPRATLKIFSTGSITVTAASVA-FVQAAIEHIFPLVYEFRK 418
>gi|156094392|ref|XP_001613233.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium vivax Sal-1]
gi|148802107|gb|EDL43506.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium vivax]
Length = 250
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 28/176 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ NI+++ NL +DL+ +A+ RNAEYNP + TG
Sbjct: 74 IHNIIASANLCVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTALIFKNGRIMLTGT 133
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K++ + +K +II+ + + K + F I+NI+ S D P+RLE LA+ H + +Y
Sbjct: 134 KTKADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEYCNY 193
Query: 111 EPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPELF GL+YR K + K V+LIFVSGKI+ITG K + YT F++IY VL ++R
Sbjct: 194 EPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVLLQYR 249
>gi|389584271|dbj|GAB67004.1| transcription initiation factor TFiid TATA-binding protein, partial
[Plasmodium cynomolgi strain B]
Length = 246
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 28/172 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ NI+++ NL ++DL+ +A+ RNAEYNP + TG
Sbjct: 74 IHNIIASANLSVEIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGT 133
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K++ + A +K +II+ + + K + F I+NI+ S D PIRLE LA+ H + +Y
Sbjct: 134 KTKGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNY 193
Query: 111 EPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
EPELF GL+YR K + K V+LIFVSGKI+ITG K + YT F++IY VL
Sbjct: 194 EPELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVL 245
>gi|392522759|gb|AFM78168.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
K+C TG KS S LAA+++A II+K+GF + DFK+QN+VG+ DV FP+RLEGL Y+H
Sbjct: 24 KMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKVQNMVGTVDVGFPVRLEGLVYAH 83
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
+SSYEPELFPGLIYR+ P++V LIFVS
Sbjct: 84 SMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|123507489|ref|XP_001329427.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912382|gb|EAY17204.1| hypothetical protein TVAG_291560 [Trichomonas vaginalis G3]
Length = 235
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 97/181 (53%), Gaps = 27/181 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNP-----------------------KV-C 48
+ V NIV+ V+ CKLDL KI RN+EYNP KV
Sbjct: 51 IPKVVNIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNI 110
Query: 49 TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS--HG 105
G KS + AAR + R+ + +G K K F I N+V + D KFPI LE +A S H
Sbjct: 111 VGCKSADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHI 170
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
F++Y PE++ GLIYR+ PK L+I+VSGKI+ITGAK +E A IYP+L F
Sbjct: 171 KFATYNPEIYAGLIYRLASPKTTLMIYVSGKIIITGAKSEEELKAASAFIYPILRLFAST 230
Query: 166 Q 166
+
Sbjct: 231 E 231
>gi|399217563|emb|CCF74450.1| unnamed protein product [Babesia microti strain RI]
Length = 283
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 35/184 (19%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+NIV++V + +DL+++A+ RNAEYNPK + TG
Sbjct: 99 TVQNIVASVYIGIDIDLRQVAISTRNAEYNPKKVNALIFRLLKPKCTSLMFQTGRIMITG 158
Query: 51 AKSEQQSKLAARKYARIIQKL--GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AK+ + +K+ A++ +++ K+ +FK+FKI+NI+ + D P+RLE LA + F
Sbjct: 159 AKTIEDAKIGAKRIVKLLLKVLKSENIRFKNFKIENIIATADCCLPVRLESLARDYREFC 218
Query: 109 SYEPELF------PGLIYR---MKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
SYEPELF GL+YR + K VLL+FVSGKI+ITG K E + F +YP+L
Sbjct: 219 SYEPELFAGEIFDSGLVYRCPPTRNTKAVLLVFVSGKIIITGCKSMREVHRVFTYMYPIL 278
Query: 160 TEFR 163
+++
Sbjct: 279 RQYQ 282
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QNIV S + I L +A S + Y P+ LI+R+ +PK L+F +G+I+ITG
Sbjct: 100 VQNIVASVYIGIDIDLRQVAISTRN-AEYNPKKVNALIFRLLKPKCTSLMFQTGRIMITG 158
Query: 142 AKVRDETYTAFENIYPVLTEFRKVQQ 167
AK ++ + I +L + K +
Sbjct: 159 AKTIEDAKIGAKRIVKLLLKVLKSEN 184
>gi|294939320|ref|XP_002782411.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894017|gb|EER14206.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 27/176 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-------------------------VCTG 50
+ N++++ L +D K IA RN EYNP+ + G
Sbjct: 80 LDNVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGKVMING 139
Query: 51 AKSEQQSKLAARKYARIIQKLGF-PA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
A + + +K +K ++++++ P+ KF +FK++N++ S DV+FPIRLE LAY H A++
Sbjct: 140 AYTIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYDHSAYA 199
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+YEPEL GL +R+ PK+V++I+VSGKI G K D+ AF +IYP+LT+++
Sbjct: 200 TYEPELSSGLYFRLFDPKLVIMIYVSGKISFIGGKTLDDISKAFCSIYPLLTQYKD 255
>gi|392522775|gb|AFM78176.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS + LA++K+A II+++GF A DFK+QNIVG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVDFKVQNIVGTADVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ QP++V+LIFVS
Sbjct: 84 HSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|8777987|gb|AAF79170.1| TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 70/109 (64%), Gaps = 24/109 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C L+LKKIAL ARNAEYNPK VCTGAKSE+ S+LA
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
ARKYARIIQKLGFPAKF DFKIQNIVGS DV F +RLE H FSS
Sbjct: 61 ARKYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLECFHTCHSQFSS 109
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R++ P+ LIF SGK+V TGAK +++ A
Sbjct: 17 AEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
>gi|392522755|gb|AFM78166.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGLAY+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLAYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|327290497|ref|XP_003229959.1| PREDICTED: TATA box-binding protein-like protein 1-like [Anolis
carolinensis]
Length = 186
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 93/173 (53%), Gaps = 24/173 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKVICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL S+ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKSNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RKV
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKT-VATAVEQIYPFVFESRKV 184
>gi|392522769|gb|AFM78173.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS + LA++K+A II+K+GF A DFK+QNIVG+ DV FPI+LEGL Y+
Sbjct: 24 KMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFKVQNIVGTADVGFPIQLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ QP++V+LIFVS
Sbjct: 84 HSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|82596850|ref|XP_726432.1| transcription initiation factor TFIId [Plasmodium yoelii yoelii
17XNL]
gi|23481840|gb|EAA17997.1| transcription initiation factor tfiid [Plasmodium yoelii yoelii]
Length = 285
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 28/176 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ NI+S+ NLD ++DL+ +A+ ++AEYNP + TG
Sbjct: 109 IHNIISSANLDTEIDLRLVAISIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGT 168
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K++ S +K +II+ + + K+FKI+NI+ S + P+RLE LA+ H + +Y
Sbjct: 169 KNKTDSIKGCKKIGKIIKLVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNY 228
Query: 111 EPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPELF GL+YR K K V+LIFVSGKI+ITG K + T F++IY VL +++
Sbjct: 229 EPELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCKSLQKLNTVFQDIYNVLVQYK 284
>gi|82179859|sp|Q5U385.1|TBPL1_DANRE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|55250384|gb|AAH85661.1| TBP-like 1 [Danio rerio]
Length = 186
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
V N+VS C L+L+ I L+ N Y P+V CTGA
Sbjct: 13 VTNVVSVFRTRCHLNLRTIGLEGTNVIYKPEVGKVLMKLRKPRITASIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++KL AR+ AR +QK+GF +F DFK+ N++ C + F IRL ++ +SYEP
Sbjct: 73 SEEEAKLGARRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P YR+K + + +F +G I +TG V+ +A E IYP+L E RK
Sbjct: 133 ELHPAASYRIKNLRSTVQVFSTGNITVTGPNVQS-VASAVEEIYPLLFECRK 183
>gi|392522727|gb|AFM78152.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522729|gb|AFM78153.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS S LA +K A I++++GF PA + +FK+QNIVG+ DV FPIRLEG+A+ H
Sbjct: 26 VITGTKSSHNSSLATKKIAYILERVGFQPASYINFKMQNIVGTVDVGFPIRLEGVAFGHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ +P++V LIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVL 159
F +I R+++P+ L+F SGK+VITG K + A + I +L
Sbjct: 3 FAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYIL 47
>gi|432945913|ref|XP_004083749.1| PREDICTED: TATA box-binding protein-like protein 1-like [Oryzias
latipes]
Length = 187
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
+ N+V+T C L+L+ IAL+ N Y P+V CTGA
Sbjct: 13 ITNVVATFRTRCHLNLRTIALEGINVIYKPEVGKVLMKLRKPRITASIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++KL AR+ AR +QKLGF +F FK+ N++ C + F I L ++ +SYEP
Sbjct: 73 SEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFSIHLVDFTKNNRPIASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P YR+K K + +F +G + ITG V++ TA E +YP+L E RK
Sbjct: 133 ELHPAATYRIKNIKATVQVFSTGSLTITGPNVQN-VATAVEQVYPLLFECRK 183
>gi|326431087|gb|EGD76657.1| TATA box binding protein [Salpingoeca sp. ATCC 50818]
Length = 166
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 27/160 (16%)
Query: 11 GAVSS--VKNIVSTVNLD-CKLDLKKIALQARNAEYNPK--------------------- 46
GA SS + NIV+T +L +L L++IA +A+N+EYNPK
Sbjct: 7 GANSSPNIVNIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSATALIFST 66
Query: 47 ---VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
V GAKSE+ + AAR++A+ I K G ++ KI N+VG D+ F + L+ L
Sbjct: 67 GKVVIMGAKSEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHLDNLHVE 126
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
H A+S+Y+PE FPGL YRM++P +VLLIF SGKIV+T AK
Sbjct: 127 HPAWSTYDPESFPGLTYRMQEPDVVLLIFHSGKIVLTKAK 166
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 82 IQNIVGSCDV-KFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
I NIV + + + ++LE +A S Y P+ + +I R+K+P LIF +GK+VI
Sbjct: 14 IVNIVATAHLSRTQLKLEEIA-EKAKNSEYNPKRYSAIIMRIKEPSATALIFSTGKVVIM 72
Query: 141 GAKVRD 146
GAK +
Sbjct: 73 GAKSEE 78
>gi|392522747|gb|AFM78162.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVSFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|358338377|dbj|GAA56757.1| TATA box-binding protein-like protein 2, partial [Clonorchis
sinensis]
Length = 92
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 71/92 (77%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
+F DF +QN+VG D++FPIRLEGL ++ + YEPELFPGLIYR+ +P++V+LIFV+
Sbjct: 1 TRFFDFTVQNMVGLFDLRFPIRLEGLLLANEQMTQYEPELFPGLIYRIIKPRLVMLIFVN 60
Query: 135 GKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
GKIV+TGAK R++ Y A N+YP+L +RK
Sbjct: 61 GKIVMTGAKSREQMYEALNNVYPILHNYRKTN 92
>gi|8777985|gb|AAF79169.1| TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 70/107 (65%), Gaps = 24/107 (22%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
L C+LDLK+IALQARNAEYNPK VCTGAKSE+ S A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 61 ARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
AR+YAR+IQKLGFPAKF DFKIQN+VGS DV F I+LE LA H +
Sbjct: 61 ARRYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEALALKHATY 107
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ Y P+ F +I R++ P+ LIF SGK+V TGAK +++ A
Sbjct: 17 AEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
>gi|392522739|gb|AFM78158.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|391329921|ref|XP_003739415.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Metaseiulus occidentalis]
Length = 284
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
+ N+V + ++ C L+L++IAL N + NP CTGA
Sbjct: 61 INNVVCSFSVGCHLNLRQIALTGANVVFRRESGMVSMKLRNPYTTASIWSSGKITCTGAT 120
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE SK+AAR++AR +QKLGF A+FK+FK+ N++G+C + F IRL + ++ + YEP
Sbjct: 121 SENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAIRLVPFSQTNKPIAQYEP 180
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL PG+ Y++K+ + L IF +G I +T V + E I+P++ E RK
Sbjct: 181 ELHPGVTYKIKEIRASLKIFSTGSITVTAPSV-SAVQQSIERIFPLVYEHRK 231
>gi|392522749|gb|AFM78163.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522737|gb|AFM78157.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|45387857|ref|NP_991285.1| TATA box-binding protein-like protein 1 [Danio rerio]
gi|33323633|gb|AAQ07595.1|AF503448_1 TBP-like factor [Danio rerio]
Length = 186
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
V N+VS C L+L+ I L+ N Y P+V CTGA
Sbjct: 13 VTNVVSVFRTRCHLNLRTIGLEGTNVIYKPEVGKVLMKLRKPRITASIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++KL +R+ AR +QK+GF +F DFK+ N++ C + F IRL ++ +SYEP
Sbjct: 73 SEEEAKLGSRRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P YR+K + + +F +G I +TG V+ +A E IYP+L E RK
Sbjct: 133 ELHPAASYRIKNLRSTVQVFSTGNITVTGPNVQS-VASAVEEIYPLLFECRK 183
>gi|392522735|gb|AFM78156.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522757|gb|AFM78167.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|47205581|emb|CAF96147.1| unnamed protein product [Tetraodon nigroviridis]
gi|47224248|emb|CAG09094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V+T C L+L+ IAL+ N Y P+ +CTGA
Sbjct: 13 ISNVVATFRTRCHLNLRTIALEGNNVIYKPEQGTVTMKLRKPRITANIWSSGKIICTGAS 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++K+ AR+ AR +QKLGF F FK+ N++ +C + F I L + ++YEP
Sbjct: 73 SEDEAKMGARRLARCLQKLGFKVSFSAFKVVNVMATCAMPFKISLIDFTKRNRPIATYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P +Y M+ PK + +F +G + I G V D A +++YP+L+E R+
Sbjct: 133 ELHPAAMYTMRHPKATVKVFATGSVTILGPSV-DNVAAAVQHVYPLLSECRR 183
>gi|52345772|ref|NP_001004932.1| TATA box-binding protein-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|82183480|sp|Q6DIY4.1|TBPL1_XENTR RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|49522390|gb|AAH75401.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
gi|89272095|emb|CAJ81743.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
+ N+V C L+L+KIAL+ N Y +V CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGLNVIYKREVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K+ AR+ AR +QKLGF KF +FK+ N++ C + F IRL + +SYEP
Sbjct: 73 SEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLAEFTKQNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRTTLQIFSTGSITVTGPDVKS-VATAIEQIYPFVFESRK 183
>gi|328704605|ref|XP_003242546.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Acyrthosiphon pisum]
Length = 301
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 25/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGA 51
S+ N+V+ +L L+L+ +AL N EY + CTG+
Sbjct: 62 SISNVVTNFSLKSHLNLRYLALNGHNIEYRRENGMLTMKLRKPNATATIWSSGKIACTGS 121
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
SE +K+A+R++ARIIQKLG+ AKF ++I N++GSC + FPI++ + + + Y
Sbjct: 122 TSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNVLGSCSLPFPIKVIQFSEKYKTIAQY 181
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPEL PG+ +++K+ K L IF +G I +T V + Y A E IYP++ FR+
Sbjct: 182 EPELHPGVTFKIKELKATLKIFSTGSITVTAPSVSN-VYQAIEQIYPMVFPFRR 234
>gi|248883|gb|AAB22100.1| transcription factor IID, TFIID [Saccharomyces cerevisiae=yeast,
Peptide Partial Mutant, 61 aa]
Length = 61
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/61 (90%), Positives = 58/61 (95%)
Query: 83 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
QNIVGSCDVKFPIRLEGLA+SHG FSSYEPELFPGLIYRM +PKIVL IFVSGKIV+TGA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGA 60
Query: 143 K 143
K
Sbjct: 61 K 61
>gi|7960166|gb|AAF71245.1| TA-TA binding protein 1 [Gallus gallus]
gi|7960168|gb|AAF71246.1| TA-TA binding protein 1 [Gallus gallus]
Length = 210
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 67/98 (68%), Gaps = 24/98 (24%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK IAL+ARNAEYNPK
Sbjct: 111 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 170
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQN 84
VCTGAKSE+QS+LAARKYAR++QKLGFPAKF DFKIQ
Sbjct: 171 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQT 208
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 115 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 173
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 174 GAKSEEQSRLA 184
>gi|156541942|ref|XP_001600485.1| PREDICTED: TATA box-binding protein-like protein 1 [Nasonia
vitripennis]
Length = 283
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L++IAL N EY + CTGA
Sbjct: 63 ISNVVCSFSVRCHLNLREIALNGSNVEYRRENGLVRMRLRKPCTLASISSSGKVTCTGAT 122
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AAR+ AR +QKLGF +F +++I N++G+C + + I++ + + YEP
Sbjct: 123 SEEEAKKAARRCARSLQKLGFRVRFNNYRIVNVLGTCTMPWAIKITSFSTHYKDIVQYEP 182
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E+ PG+IY++K K L IF +G I +T + + A E+IYP++ EFRK
Sbjct: 183 EIQPGVIYKLKNMKATLRIFSTGSITVTAPSI-NAVQAAIEHIYPLVYEFRK 233
>gi|417396717|gb|JAA45392.1| Putative tata-box binding protein tbp component of tfiid and tfiiib
[Desmodus rotundus]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|348506447|ref|XP_003440770.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Oreochromis niloticus]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
+ N+V+T C L+L+ IAL+ N Y P+V CTGA
Sbjct: 13 ITNVVATFRTRCHLNLRTIALEGTNVIYKPEVGKVLMKLRKPMITASIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++KL AR+ AR +QKLGF +F FK+ N++ C + F + L ++ +SYEP
Sbjct: 73 SEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFAVHLIDFTKNNRPIASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P YR+K K + +F +G + +TG V++ TA E +YP+L E +K
Sbjct: 133 ELHPAATYRIKNLKATIQVFSTGSLTVTGPNVQN-VATAVEQVYPLLFECQK 183
>gi|149722967|ref|XP_001504421.1| PREDICTED: TATA box-binding protein-like protein 1-like [Equus
caballus]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGTNVK-AVATAVEQIYPFVFESRK 183
>gi|392522753|gb|AFM78165.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK V L+FVS
Sbjct: 84 HFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
>gi|355748887|gb|EHH53370.1| hypothetical protein EGM_14000, partial [Macaca fascicularis]
Length = 186
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|392522745|gb|AFM78161.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +P +V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
>gi|148224606|ref|NP_001083732.1| TATA box-binding protein-like protein 1 [Xenopus laevis]
gi|25091422|sp|Q9W6Z2.1|TBPL1_XENLA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; Short=xlTLF
gi|4689078|emb|CAB41487.1| TBP-like factor [Xenopus laevis]
gi|58702024|gb|AAH90226.1| TLF protein [Xenopus laevis]
Length = 186
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
+ N+V C L+L+KIAL+ N Y +V CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGLNVIYKREVSKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K+ AR+ AR +QKLGF KF +FK+ N++ C + F IRL + +SYEP
Sbjct: 73 SEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLNEFTKQNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ +A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPDVKS-VASAIEQIYPFVFESRK 183
>gi|197102368|ref|NP_001126267.1| TATA box-binding protein-like protein 1 [Pongo abelii]
gi|75054881|sp|Q5R7U8.1|TBPL1_PONAB RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|55730887|emb|CAH92162.1| hypothetical protein [Pongo abelii]
Length = 190
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|392522733|gb|AFM78155.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TG KS + LA +K A I++++GF P FK+QNIVG+ DV FPIRLEG+A++H
Sbjct: 26 VITGTKSSHNASLATKKIAYILERVGFQPESHIHFKVQNIVGTVDVGFPIRLEGVAFAHP 85
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
FSSYEPELFPGLIYR+ QP++ LLIFVS
Sbjct: 86 TFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
>gi|403282108|ref|XP_003932505.1| PREDICTED: TATA box-binding protein-like protein 1 [Saimiri
boliviensis boliviensis]
Length = 186
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|12653225|gb|AAH00381.1| TBP-like 1 [Homo sapiens]
gi|167774053|gb|ABZ92461.1| TBP-like 1 [synthetic construct]
Length = 186
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDAGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|4759234|ref|NP_004856.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|6755811|ref|NP_035733.1| TATA box-binding protein-like protein 1 [Mus musculus]
gi|115495315|ref|NP_001069758.1| TATA box-binding protein-like protein 1 [Bos taurus]
gi|150010556|ref|NP_001092762.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|187761295|ref|NP_001120673.1| TATA box binding protein-like 1 [Rattus norvegicus]
gi|356582420|ref|NP_001239188.1| TATA box-binding protein-like protein 1 [Canis lupus familiaris]
gi|358439409|ref|NP_001240605.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|291397013|ref|XP_002714878.1| PREDICTED: TBP-like 1 [Oryctolagus cuniculus]
gi|301773832|ref|XP_002922334.1| PREDICTED: TATA box-binding protein-like protein 1-like [Ailuropoda
melanoleuca]
gi|311243911|ref|XP_003121240.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Sus scrofa]
gi|311243913|ref|XP_003121241.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Sus scrofa]
gi|332213363|ref|XP_003255790.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Nomascus leucogenys]
gi|332213365|ref|XP_003255791.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Nomascus leucogenys]
gi|390462056|ref|XP_003732780.1| PREDICTED: TATA box-binding protein-like protein 1-like [Callithrix
jacchus]
gi|397514939|ref|XP_003827726.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Pan
paniscus]
gi|397514941|ref|XP_003827727.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Pan
paniscus]
gi|402868220|ref|XP_003898208.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Papio
anubis]
gi|402868222|ref|XP_003898209.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Papio
anubis]
gi|410960078|ref|XP_003986624.1| PREDICTED: TATA box-binding protein-like protein 1 [Felis catus]
gi|426354625|ref|XP_004044755.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|426354627|ref|XP_004044756.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|61248508|sp|P62340.1|TBPL1_MOUSE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=TATA box-binding protein-related
factor 2; Short=TBP-related factor 2; AltName:
Full=TBP-like factor; AltName: Full=TBP-related protein
gi|61248509|sp|P62380.1|TBPL1_HUMAN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=Second TBP of unique DNA protein;
Short=STUD; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|75076931|sp|Q4R848.1|TBPL1_MACFA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|122143990|sp|Q32LB1.1|TBPL1_BOVIN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|4581931|gb|AAD24800.1|AF130312_1 STUD protein [Homo sapiens]
gi|4741974|gb|AAD28785.1|AF136570_1 TATA box binding protein-related factor 2 [Homo sapiens]
gi|4218070|dbj|BAA74578.1| 21-kDa TBP-like protein [Mus musculus]
gi|4579753|dbj|BAA75218.1| TBP-like protein [Homo sapiens]
gi|17028477|gb|AAH17559.1| TBP-like 1 [Homo sapiens]
gi|26340704|dbj|BAC34014.1| unnamed protein product [Mus musculus]
gi|26347363|dbj|BAC37330.1| unnamed protein product [Mus musculus]
gi|67968732|dbj|BAE00724.1| unnamed protein product [Macaca fascicularis]
gi|81674129|gb|AAI09667.1| TBP-like 1 [Bos taurus]
gi|119568380|gb|EAW47995.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|119568381|gb|EAW47996.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|148672813|gb|EDL04760.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148672815|gb|EDL04762.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148910857|tpg|DAA06039.1| TPA_inf: TATA box binding protein-like 1 [Pan troglodytes]
gi|158258072|dbj|BAF85009.1| unnamed protein product [Homo sapiens]
gi|189053895|dbj|BAG36402.1| unnamed protein product [Homo sapiens]
gi|208967921|dbj|BAG73799.1| TBP-like 1 [synthetic construct]
gi|281342972|gb|EFB18556.1| hypothetical protein PANDA_011296 [Ailuropoda melanoleuca]
gi|296483997|tpg|DAA26112.1| TPA: TATA box-binding protein-like protein 1 [Bos taurus]
gi|335775744|gb|AEH58674.1| TATA box-binding protein-like protein 1-like protein [Equus
caballus]
gi|343961185|dbj|BAK62182.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|351696954|gb|EHA99872.1| TATA box-binding protein-like protein 1 [Heterocephalus glaber]
gi|355562045|gb|EHH18677.1| hypothetical protein EGK_15331, partial [Macaca mulatta]
gi|380785063|gb|AFE64407.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|383409717|gb|AFH28072.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|384943312|gb|AFI35261.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|410207162|gb|JAA00800.1| TBP-like 1 [Pan troglodytes]
gi|410252770|gb|JAA14352.1| TBP-like 1 [Pan troglodytes]
gi|410291926|gb|JAA24563.1| TBP-like 1 [Pan troglodytes]
gi|410342865|gb|JAA40379.1| TBP-like 1 [Pan troglodytes]
gi|440912697|gb|ELR62245.1| TATA box-binding protein-like protein 1 [Bos grunniens mutus]
Length = 186
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|392522743|gb|AFM78160.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLEGL Y+
Sbjct: 24 KMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|354500033|ref|XP_003512107.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cricetulus
griseus]
gi|344257078|gb|EGW13182.1| TATA box-binding protein-like protein 1 [Cricetulus griseus]
Length = 186
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E +YP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQVYPFVFESRK 183
>gi|126311117|ref|XP_001380665.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Monodelphis domestica]
gi|395534983|ref|XP_003769512.1| PREDICTED: TATA box-binding protein-like protein 1 [Sarcophilus
harrisii]
Length = 186
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKALRATLQIFSTGSITVTGPNVK-AVATAVEQIYPYVFESRK 183
>gi|45382085|ref|NP_990086.1| TATA box-binding protein-like protein 1 [Gallus gallus]
gi|326915870|ref|XP_003204235.1| PREDICTED: TATA box-binding protein-like protein 1-like [Meleagris
gallopavo]
gi|25091426|sp|Q9YGV8.1|TBPL1_CHICK RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TBP-like factor
gi|4520318|dbj|BAA75886.1| TBP-like protein [Gallus gallus]
Length = 183
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKVICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ +A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKTLRATLQIFSTGSITVTGPNVK-AVASAVEQIYPFVFESRK 183
>gi|326432022|gb|EGD77592.1| TATA-box-binding protein [Salpingoeca sp. ATCC 50818]
Length = 271
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 76 KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135
+F FK+QN+V CD +FPIRLE L + FS+YEPELFPGL++RM +P+ V+L FVSG
Sbjct: 183 RFDGFKVQNMVAKCDCRFPIRLEALQAHYPVFSTYEPELFPGLVFRMAEPRCVVLCFVSG 242
Query: 136 KIVITGAKVRDETYTAFENIYPVLTEFRK 164
K+VITGAK R++ AF+NI +L FRK
Sbjct: 243 KLVITGAKSREQIQEAFDNICDMLKPFRK 271
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNP 45
+ + N+V+TVNL LDLK IA+ ARNA+Y P
Sbjct: 38 GLPEIVNVVATVNLGLTLDLKYIAMHARNAQYTP 71
>gi|392522741|gb|AFM78159.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FPIRLE L Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPIRLERLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+FVS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|417904|sp|P32086.1|TBP_PLAFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|5911375|gb|AAD55768.1|AF177280_1 TATA-binding protein [Plasmodium falciparum]
gi|160700|gb|AAA29769.1| TATA-binding protein [Plasmodium falciparum]
gi|38194140|gb|AAR13208.1| TATA-binding protein [synthetic construct]
Length = 228
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 28/178 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++ NI+S+ NL ++L+ +A+ RNAEYNP + TG
Sbjct: 51 NIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTG 110
Query: 51 AKSEQQSKLAARKYARIIQKLG-FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
++++ S + +K A+II+ + KF +FKI+NI+ S + PIRLE LA+ H + +
Sbjct: 111 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 170
Query: 110 YEPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPELF GL+YR K K V+LIFVSGKI+ITG K ++ YT F++IY VL +++
Sbjct: 171 YEPELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCKSVNKLYTVFQDIYNVLIQYKN 228
>gi|426234833|ref|XP_004011396.1| PREDICTED: TATA box-binding protein-like protein 1 [Ovis aries]
Length = 186
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ +A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVASAVEQIYPFVFESRK 183
>gi|224048129|ref|XP_002191326.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Taeniopygia guttata]
gi|449497471|ref|XP_004174223.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Taeniopygia guttata]
Length = 183
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKVICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ +A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVASAVEQIYPFVFESRK 183
>gi|449274009|gb|EMC83325.1| TATA box-binding protein-like protein 1 [Columba livia]
Length = 183
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKVICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ +A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKTLRATLQIFSTGSITVTGPNVK-AVASAVEQIYPFVFESRK 183
>gi|167522359|ref|XP_001745517.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775866|gb|EDQ89488.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G +V+N+V+T K++L ++ + RN EYNP+
Sbjct: 30 GITPTVENVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVIRNKLPHSTGLLFSSGKL 89
Query: 47 VCTGAKSEQQSKLAARKYARI-IQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V G KSE+Q++ A K+ I I++ FKI N+VG DV F I L L H
Sbjct: 90 VIMGCKSEEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGKVDVGFKIDLHKLHMEHS 149
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
F +Y+PE FPGL YRM+ P +VLL+F SGK+V+T AK R E I P L E R
Sbjct: 150 KFVTYDPETFPGLTYRMQDPSVVLLVFHSGKVVLTKAKTRLEMIEGLRRILPTLKENR 207
>gi|345328513|ref|XP_001506923.2| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Ornithorhynchus anatinus]
gi|345328515|ref|XP_003431275.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Ornithorhynchus anatinus]
Length = 183
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DF++ N++ C++ F IRL + +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFRVVNVLAVCNMPFEIRLPEFTKKNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKTLRATLQIFSTGSITVTGPSVK-AVATAVEQIYPFVFESRK 183
>gi|355723500|gb|AES07911.1| TATA box binding protein-like protein 1 [Mustela putorius furo]
Length = 185
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 16 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 75
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 76 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 135
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E R
Sbjct: 136 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESR 185
>gi|387018946|gb|AFJ51591.1| TATA box-binding protein-like protein 1 [Crotalus adamanteus]
Length = 183
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKVICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++K AR+ AR +QKLGF F DFK+ N++ C++ F +RL ++ +SYEP
Sbjct: 73 SEAEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEVRLPEFTRNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKTLRATLQIFSTGSITVTGPNVK-AVATAVEEIYPYVFESRK 183
>gi|124506045|ref|XP_001351620.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
gi|23504547|emb|CAD51427.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
Length = 327
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 28/178 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++ NI+S+ NL ++L+ +A+ RNAEYNP + TG
Sbjct: 150 NIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTG 209
Query: 51 AKSEQQSKLAARKYARIIQKLG-FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
++++ S + +K A+II+ + KF +FKI+NI+ S + PIRLE LA+ H + +
Sbjct: 210 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 269
Query: 110 YEPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPELF GL+YR K K V+LIFVSGKI+ITG K ++ YT F++IY VL +++
Sbjct: 270 YEPELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCKSVNKLYTVFQDIYNVLIQYKN 327
>gi|444729025|gb|ELW69456.1| TATA box-binding protein-like protein 1 [Tupaia chinensis]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ A E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVAAAVEQIYPFVFESRK 183
>gi|159147345|gb|ABW91067.1| TATA box-binding protein related factor 2 [Bos taurus]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIXTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P + YR+K + L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 183
>gi|321468361|gb|EFX79346.1| hypothetical protein DAPPUDRAFT_304868 [Daphnia pulex]
Length = 297
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 25/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGA 51
++ N+V + ++ L+LK+IA N EY + CTGA
Sbjct: 71 TINNVVCSFSVKSHLNLKQIAQSGYNVEYRRENGMVTMRLRKPYTTASIWSSGKVTCTGA 130
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
SE ++K AAR+ R + KLG+P + ++++ N++G+C + F I++ + H +SY
Sbjct: 131 TSEDEAKQAARRITRSVSKLGYPKLRLVNYRVVNVLGTCTMPFAIKITPFSAKHRDIASY 190
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPEL PG+ YR+K+PK L IF +G I +T V + +A E+IYP++ EFRK
Sbjct: 191 EPELHPGVTYRLKEPKATLKIFSTGSITVTAPCVGN-VQSAIEHIYPLVFEFRK 243
>gi|443686931|gb|ELT90049.1| hypothetical protein CAPTEDRAFT_75203, partial [Capitella teleta]
Length = 196
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + + C L+LK+IA + + Y P+ TG+
Sbjct: 26 INNVVCSFSTRCHLNLKRIAREGNHVIYKPENGMVSMKLRKPYTTANIWSSGSITATGST 85
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+Y RI+QK+GF +F +++ N++G+C + F IR+ A H SYEP
Sbjct: 86 SEVDAKIAARRYCRILQKMGFRVRFGRYRVVNVLGTCSLPFGIRISQFAQDHHKQCSYEP 145
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL PG Y M +P+ L +F +G I +T +V + A +I+P++ ++R
Sbjct: 146 ELHPGATYTMMEPRATLKLFTTGSITVTAPRV-ENVKLAINHIWPLVFKYR 195
>gi|145509947|ref|XP_001440912.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408140|emb|CAK73515.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 95/175 (54%), Gaps = 31/175 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTV+L +L+L I+ AR AEYNPK VCTGA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGA 86
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KSE QS +AARKYA+II KLGFP +Q L+ Y + YE
Sbjct: 87 KSEDQSLIAARKYAKIINKLGFPVV---TLLQASTSESQSNQTNLLKDQQYR--SVVQYE 141
Query: 112 PELFPGLIYR--MKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PE+FPGLI+R Q KI LLIFVSG+ VITG K ++ F+ I P+L +F+K
Sbjct: 142 PEIFPGLIFRKITDQKKITLLIFVSGRCVITGGKKTEDLNNVFKFILPILDQFKK 196
>gi|260797205|ref|XP_002593594.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
gi|229278820|gb|EEN49605.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
Length = 205
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGA 51
+ N+V + C L+L+ IAL N Y + VCTGA
Sbjct: 35 DIANVVCSFRARCHLNLRMIALNGANVIYKRELGKVTMKLRRPYCTANIWSSGKIVCTGA 94
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
+SE +K AR+ AR +Q +GF F +FK+ N++G C + F I++ + H +SYE
Sbjct: 95 RSEDDAKKGARRCARTLQNMGFQVHFSEFKVVNVLGICAMPFTIKITLFSKHHKENASYE 154
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
PEL PG+ Y+++ PK V+ IF +G I T V + A E+IYP++ EFR
Sbjct: 155 PELHPGVTYKIRDPKAVMKIFSTGSITCTAPCVAN-IQRAIEHIYPLVHEFR 205
>gi|392522751|gb|AFM78164.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 46 KVC-TGAKSEQQSKLAARKYARIIQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
K+C TG KS S LA++K+A I+ K+GF P DFK+QN+VG+ DV FP RLEGL Y+
Sbjct: 24 KMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFKVQNMVGTLDVGFPNRLEGLVYA 83
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
H F+SYEPELFPGLIYR+ +PK+V L+ VS
Sbjct: 84 HSTFASYEPELFPGLIYRLYEPKVVFLVSVS 114
>gi|339237017|ref|XP_003380063.1| TATA-box-binding protein [Trichinella spiralis]
gi|316977178|gb|EFV60321.1| TATA-box-binding protein [Trichinella spiralis]
Length = 315
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PK-----------VCTGAK 52
++N+V+ N+ C LDL IA+ N Y P+ +GA+
Sbjct: 108 IRNVVTMFNVCCHLDLHHIAMHTCNVIYERYRGVLIFQIKKPRCYVKMWSSGKITVSGAQ 167
Query: 53 SEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
SE++++ ++R ARI+QK+ P +F D+++ NI+ +C + F IR+ LA + SSYE
Sbjct: 168 SEEEARKSSRSVARIVQKIVGPRVRFADYRVTNIMATCKLPFGIRIPNLATEYPRESSYE 227
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
PEL GL++R PK L I +G I ITGA+ + + T E++YP+L F+
Sbjct: 228 PELSIGLVWRSASPKATLRIHSTGSITITGAESQADILTVMESLYPILVRFK 279
>gi|148672814|gb|EDL04761.1| TATA box binding protein-like 1, isoform CRA_b [Mus musculus]
Length = 206
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 24/161 (14%)
Query: 27 CKLDLKKIALQARNAEYN------------PKV-----------CTGAKSEQQSKLAARK 63
C L+L+KIAL+ N Y P++ CTGA SE+++K AR+
Sbjct: 44 CHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARR 103
Query: 64 YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK 123
AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEPEL P + YR+K
Sbjct: 104 LARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIK 163
Query: 124 QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ L IF +G I +TG V+ TA E IYP + E RK
Sbjct: 164 SLRATLQIFSTGSITVTGPNVK-AVATAVEQIYPFVFESRK 203
>gi|68074137|ref|XP_678983.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium berghei strain ANKA]
gi|56499609|emb|CAH98178.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium berghei]
Length = 252
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 28/176 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+ NI+S+ NLD +++L+ +A+ ++AEYNP + TG
Sbjct: 76 IHNIISSANLDAEINLRLVAVSIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGT 135
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS+ S +K +II+ + + K+FKI+NI+ S + P+RLE LA+ H + +Y
Sbjct: 136 KSKTDSIKGCKKIGKIIKIVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNY 195
Query: 111 EPELFPGLIYRMK---QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPELF GL+YR K K V+LIFVSGKI+ITG K + T F++IY VL +++
Sbjct: 196 EPELFAGLVYRYKPASNLKSVILIFVSGKIIITGCKSLQKLNTVFQDIYNVLVQYK 251
>gi|401407154|ref|XP_003883026.1| TATA-binding protein, related [Neospora caninum Liverpool]
gi|325117442|emb|CBZ52994.1| TATA-binding protein, related [Neospora caninum Liverpool]
Length = 538
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
CT +S + S + R QKL +DFK++N+V S D P+RLEGLA+ H F
Sbjct: 423 CTAVQSSESSLVLVEPDRRSKQKLCL----RDFKVENVVASADCGVPVRLEGLAFEHKEF 478
Query: 108 SSYEPELFPGLIYRMKQP---KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
SSYEPELF GL+YR K VLL+FVSGK+VITG K E FE++YPVL + +
Sbjct: 479 SSYEPELFSGLVYRYNPTASLKAVLLVFVSGKVVITGCKNLSEVNHVFESLYPVLVRYHQ 538
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
F+ Y P I R++ PK +L+F SG+++ITGA+ E A
Sbjct: 319 FAEYNPRKINACIVRLRNPKCTVLVFRSGRLIITGARSETEAERA 363
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 36/92 (39%)
Query: 13 VSSVKNIVSTVNL------------DCKLDLKKIALQARNAEYNPK-------------- 46
V +V+N+V++ + D KLDL+ +A+ R AEYNP+
Sbjct: 280 VPAVQNVVASARVVWRTEAGDAWKDDAKLDLRHLAISCRFAEYNPRKINACIVRLRNPKC 339
Query: 47 ----------VCTGAKSEQQSKLAARKYARII 68
+ TGA+SE +++ AAR A+++
Sbjct: 340 TVLVFRSGRLIITGARSETEAERAARLTAKML 371
>gi|410916461|ref|XP_003971705.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 24/170 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAKSE 54
N+V+T C+L+L I + +N YN + +C GA SE
Sbjct: 15 NVVATFRTGCRLNLHTIGSKGKNVIYNTRRGKVTMQLRKPRITASIWASGKVICIGASSE 74
Query: 55 QQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEL 114
++KL AR+ AR +QKLGF KF FK+ N++ C + F I L + ++YEPEL
Sbjct: 75 DEAKLGARRIARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEPEL 134
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+P +Y M+QPK + +F +G + I V + A +++YP+L+E R+
Sbjct: 135 YPAAMYTMRQPKATIKVFSTGSVTILAPSVVN-VAAAVQHVYPLLSECRR 183
>gi|326432016|gb|EGD77586.1| hypothetical protein PTSG_08683 [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 86/173 (49%), Gaps = 63/173 (36%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V NIV+TVNL LDLK I L RNAEY+PK +CTGA
Sbjct: 51 VVNIVATVNLATHLDLKHITLSVRNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGA 110
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
KS + + + ARK+A+II+K+GF
Sbjct: 111 KSTEDAYVGARKFAKIIKKIGF-------------------------------------- 132
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
LFPGLI+RM P++V+LIFVSGK+VITGAK ++ AF+NI +L FRK
Sbjct: 133 -SLFPGLIFRMADPRVVVLIFVSGKLVITGAKSHEDIEQAFDNICILLQTFRK 184
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V +G + A + + + + G P ++ NIV + ++ + L+ + S
Sbjct: 22 VASGGNTGNAVSAAGGETSSALVQTGRP------EVVNIVATVNLATHLDLKHITLSV-R 74
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 149
+ Y P+ F ++ R++ P+ L+F +GK++ TGAK ++ Y
Sbjct: 75 NAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGAKSTEDAY 117
>gi|158288977|ref|XP_310781.4| AGAP000335-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 23/153 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L+ IAL N E+ + CTGA
Sbjct: 59 INNVVCSFSVRCHLNLRDIALYGDNVEFRRENGMVTMKLRRPYTTASIWSSGKITCTGAT 118
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE Q+K+AAR+Y+R +QKLGF + ++F+I N++G+C + + I++ + + +SYEP
Sbjct: 119 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYEP 178
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145
EL PG+ Y++ P+ L IF +G I +TG VR
Sbjct: 179 ELHPGVTYKLHSPRATLKIFSTGSITVTGKCVR 211
>gi|317575757|ref|NP_001188053.1| TATA box-binding protein-like protein 1 [Ictalurus punctatus]
gi|308324695|gb|ADO29482.1| tata box-binding protein-like protein 1 [Ictalurus punctatus]
Length = 186
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV-----------------------CTGAK 52
+ N+VS C L+L+ I L+ N Y P+V CTGA
Sbjct: 13 ITNVVSVFRTRCHLNLRTIGLEGNNVIYRPEVGKVLMKLRKPRITASIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE ++K+ AR+ AR +QK+GF +F DFK+ N++ C + F IRL ++ +SYE
Sbjct: 73 SEDEAKVGARRLARCLQKIGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEL 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P YR+K + + +F +G + +TG V+ +A E IYP+L E +K
Sbjct: 133 ELHPAASYRIKTLRATVQVFSTGSVTVTGPNVQS-VASAVEQIYPLLFECQK 183
>gi|124027807|ref|YP_001013127.1| transcription factor [Hyperthermus butylicus DSM 5456]
gi|123978501|gb|ABM80782.1| TATA-box binding protein [Hyperthermus butylicus DSM 5456]
Length = 202
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 26/178 (14%)
Query: 14 SSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCT 49
+ ++NIV+TV+LD +LDL+ I EYNP+ V T
Sbjct: 24 AKIENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVT 83
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
GAKS + A +K R ++K G P + +IQNIV S ++ + LE A + S
Sbjct: 84 GAKSTKDLIEAVKKIVRNLKKHGIPIYGRPKVQIQNIVASANLNVCVDLERAALTL-ENS 142
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
YEPE FPGLI+RM +P++VLLIF SGK+VITGAK +E Y A IY L + R ++
Sbjct: 143 MYEPEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKLRAIR 200
>gi|327400113|ref|YP_004340952.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
gi|327315621|gb|AEA46237.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
Length = 184
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 26/171 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +DL KIA + ++AEY PK VCTG+
Sbjct: 9 IENVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGS 68
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + + A R+ +II +LG P + + K+QNIV S D+ + L +A G +
Sbjct: 69 KSVEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLENIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
YEPE FPGL+YR+ +P++V+LIF SGK+V+TG K ++ A E I L+
Sbjct: 129 YEPEQFPGLVYRLDKPRVVVLIFGSGKMVVTGGKNPEDAVKAVERIAEELS 179
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 78 KDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135
KD+KI +N+V S + I L +A + Y+P+ FPGL+ R K+PK LIF SG
Sbjct: 3 KDYKIKIENVVASTQIGENIDLNKIA-KEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSG 61
Query: 136 KIVITGAKVRDETYTAFENIYPVLTEF 162
K+V TG+K ++ A + +++E
Sbjct: 62 KVVCTGSKSVEDANRAVRQVVKIISEL 88
>gi|198450906|ref|XP_002137175.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
gi|198131246|gb|EDY67733.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
Length = 642
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 23/171 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV----------------------CTGAKS 53
++N+V + N+ C+LDL IA + N +Y+ CTG S
Sbjct: 241 IRNVVCSFNVGCQLDLSDIAQRGFNVKYHKSRNLTMKLRRPAATALIWSSGRINCTGTTS 300
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E +K+AAR++AR + KLGFP F++F+I+ ++G+C + + I + + H + +PE
Sbjct: 301 EILAKVAARRFARCLWKLGFPTSFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQDPE 360
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ + Y+M+ PK L IF +G I + A+V + +A E+IYP++ EFRK
Sbjct: 361 MHWCVTYKMQMPKATLKIFTTGSITVMAARV-NLVESAIEHIYPLVREFRK 410
>gi|119872319|ref|YP_930326.1| transcription factor [Pyrobaculum islandicum DSM 4184]
gi|166227824|sp|A1RSQ1.1|TBP_PYRIL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|119673727|gb|ABL87983.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
islandicum DSM 4184]
Length = 199
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 95/177 (53%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+K+A + AEYNP
Sbjct: 5 GPTYRIENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKM 64
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAK+E+ K A R ++++ G F + ++QNIV S ++ + LE A
Sbjct: 65 VCTGAKNEEDLKNAVRALVKLLRDHGAEVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLML 123
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM P++V+LIF SGKIV TGAK + TA + +Y L +
Sbjct: 124 ENAMYEPEQFPGLIYRMSSPRVVMLIFGSGKIVCTGAKSERDVATAVQKLYNQLKDL 180
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ NL ++DL++ L NA Y P+ VCTGA
Sbjct: 101 VQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVMLIFGSGKIVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K ++ LG
Sbjct: 161 KSERDVATAVQKLYNQLKDLG 181
>gi|18313147|ref|NP_559814.1| transcription factor [Pyrobaculum aerophilum str. IM2]
gi|24638239|sp|Q8ZVR0.1|TBP_PYRAE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|18160658|gb|AAL63996.1| transcription initiation factor TFIID (TATA-binding) [Pyrobaculum
aerophilum str. IM2]
Length = 199
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TVNL +LDL+++A + AEYNP VCTGA
Sbjct: 10 IENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
K+E+ K A R ++++ G F + +IQNIV S ++ + LE A + Y
Sbjct: 70 KNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENAMY 128
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGLIYRM P++V+LIF SGKIV TGAK + TA + +Y L E
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKEL 180
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL ++DL++ L NA Y P+ VCTGA
Sbjct: 101 IQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K +++LG
Sbjct: 161 KSEKDVATAVQKLYNQLKELG 181
>gi|47224247|emb|CAG09093.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 24/173 (13%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGA 51
++ N+V+T C L+L IA N + P+ +CTGA
Sbjct: 12 TISNVVATFRTGCHLNLYAIACNGHNVIHRPERGTVTMQLRKPRVTANIWSSGKVICTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
SEQ++K+ AR+ AR +QKL FP F FK+ N++ + + F I L + + YE
Sbjct: 72 TSEQEAKMGARRIARCVQKLNFPVSFSAFKVVNVMVTSAMPFKISLIDFTKRNRPVTRYE 131
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
PEL P +Y M+ PK + +F +G + I G V + T A +NIYP+L+ R+
Sbjct: 132 PELHPAAMYTMRHPKATVRVFATGSVTIFGPSVANVT-VAIQNIYPLLSACRR 183
>gi|193875778|gb|ACF24525.1| TATA binding protein of TFIID [Gymnochlora stellata]
Length = 162
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 25/138 (18%)
Query: 29 LDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKY 64
LDLKK+AL+A+N+EYNPK VCTG K+E ++K A+ K+
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKF 60
Query: 65 ARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK 123
++I++ GF A K++ ++N+V +CD + PI L+ + + + YEPE+FPGL++R
Sbjct: 61 LKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCMYEPEIFPGLLFRPN 120
Query: 124 QPKIVLLIFVSGKIVITG 141
+ KIV++ F SGKIVITG
Sbjct: 121 KAKIVVIFFSSGKIVITG 138
>gi|126459691|ref|YP_001055969.1| transcription factor [Pyrobaculum calidifontis JCM 11548]
gi|166227823|sp|A3MV36.1|TBP_PYRCJ RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|126249412|gb|ABO08503.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
calidifontis JCM 11548]
Length = 199
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+ +A + AEYNP
Sbjct: 5 GPSYRIENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKM 64
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAK+E+ K A R +++ G F + +IQNIV S ++ + LE +
Sbjct: 65 VCTGAKNEEDLKNAVRALVKLLNDHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFML- 123
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM P++V+LIF SGKIV TGAK + TA + +Y L E
Sbjct: 124 ENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKEL 180
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL ++DL++ NA Y P+ VCTGA
Sbjct: 101 IQNIVASGNLHAEVDLEQAVFMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K +++LG
Sbjct: 161 KSEKDVATAVQKLYNQLKELG 181
>gi|325969184|ref|YP_004245376.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
gi|323708387|gb|ADY01874.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
Length = 193
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 92/172 (53%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TVNL LDL K+A + AEYNP+ VCTGA
Sbjct: 8 IENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE + K A ++ R++ + G + ++QNIV S ++ + +E A S Y
Sbjct: 68 KSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALML-ENSMY 126
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGLIYRM PK+VLLIF SGKIV TGAK + A I+ VL +
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDVLRDI 178
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ NL ++D++K AL N+ Y P+ VCTGA
Sbjct: 99 VQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGA 158
Query: 52 KSEQQSKLAARKYARIIQKLG 72
K EQQ + A K +++ +G
Sbjct: 159 KKEQQVRDAVFKIHDVLRDIG 179
>gi|385805423|ref|YP_005841821.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
gi|383795286|gb|AFH42369.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
Length = 206
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 96/192 (50%), Gaps = 39/192 (20%)
Query: 5 ICYL-----ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------- 46
+CY+ I V ++NIV+TV LD +LDL +I + EYNP
Sbjct: 4 VCYMKKTNSISKPVVQIENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPK 63
Query: 47 -----------VCTGAKSEQQSKLAARK-----YARIIQKLGFPAKFKDFKIQNIVGSCD 90
V TG+KS Q+ A ++ Y I+ G P +IQNIV S +
Sbjct: 64 ITALIFKSGKMVVTGSKSTQELITAVKRIIKTFYNHGIKITGRPK----IQIQNIVASAN 119
Query: 91 VKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYT 150
+ + LE AY + YEPE FPGLI+RM P +VLLIF SGK+VITGAK +E
Sbjct: 120 LNVDVNLEDAAYKLEN-NMYEPEQFPGLIHRMTDPYVVLLIFSSGKMVITGAKREEEVSK 178
Query: 151 AFENIYPVLTEF 162
A ENIY L E
Sbjct: 179 AVENIYKTLKEL 190
>gi|449545513|gb|EMD36484.1| hypothetical protein CERSUDRAFT_95784 [Ceriporiopsis subvermispora
B]
Length = 154
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 77/130 (59%), Gaps = 28/130 (21%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
V TGAKSE + LA+RK ARI+QKL F F + KIQN +GS D
Sbjct: 19 VVTGAKSEDNTCLASRKSARIVQKLEFDPNFSELKIQNTMGSRD---------------- 62
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV------------RDETYTAFEN 154
FSS+EPELFPGL Y M +PK+VLLIF+S +V+T AKV R+E YTA
Sbjct: 63 FSSFEPELFPGLTYSMIKPKVVLLIFMSRMVVLTRAKVHIFYYWEASSPGREEIYTALTT 122
Query: 155 IYPVLTEFRK 164
IY VL EF++
Sbjct: 123 IYTVLYEFQE 132
>gi|325188734|emb|CCA23265.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 216
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 95/178 (53%), Gaps = 30/178 (16%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEY--------------NPK---------- 46
G + N++ + ++ LD+K +AL RNA+Y P+
Sbjct: 23 GVTFRLVNLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMILRFRTPRASVIAYRSGK 82
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
+ GAKS + L +K+ I+QK G P + FKI N +CD+KF +AY
Sbjct: 83 FIVIGAKSPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCAACDLKF----RKIAYKD- 137
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
A + YEPELFPGLIYRM PK +L+F+SGKIVITG + ++ A NI+PVL +FR
Sbjct: 138 ASAQYEPELFPGLIYRMLVPKCTMLVFISGKIVITGFQKIEDGEQALCNIFPVLCKFR 195
>gi|307594950|ref|YP_003901267.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
gi|307550151|gb|ADN50216.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
Length = 193
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 92/172 (53%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TVNL LDL K+A + AEYNP+ VCTGA
Sbjct: 8 IENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KSE + K A ++ R++ + G + ++QNIV S ++ + +E A S Y
Sbjct: 68 KSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALML-ENSMY 126
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGLIYRM PK+VLLIF SGKIV TGAK + A I+ +L +
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDILKDI 178
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ NL ++D++K AL N+ Y P+ VCTGA
Sbjct: 99 VQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGA 158
Query: 52 KSEQQSKLAARKYARIIQKLG 72
K EQQ + A K I++ +G
Sbjct: 159 KKEQQVRDAVFKIHDILKDIG 179
>gi|171185805|ref|YP_001794724.1| transcription factor [Pyrobaculum neutrophilum V24Sta]
gi|226703562|sp|B1Y949.1|TBP_THENV RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|170935017|gb|ACB40278.1| 2-alkenal reductase [Pyrobaculum neutrophilum V24Sta]
Length = 197
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+K+A + AEYNP
Sbjct: 5 GPSYRIENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKM 64
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAK+E+ K A R ++++ G F + +IQNIV S ++ + LE A
Sbjct: 65 VCTGAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQ-AVLML 123
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM P++V+LIF SGKIV TGAK + TA + +Y L +
Sbjct: 124 ENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKDL 180
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL ++DL++ L NA Y P+ VCTGA
Sbjct: 101 IQNIVASGNLFAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K ++ LG
Sbjct: 161 KSEKDVATAVQKLYNQLKDLG 181
>gi|348523966|ref|XP_003449494.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 37/188 (19%)
Query: 1 MLPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKVCTG---------- 50
++P IC N++STV+L C LDLK IA + N EY P+ TG
Sbjct: 119 LVPVIC-----------NVISTVDLGCSLDLKFIARRMWNVEYKPQTFTGIIARIREPEA 167
Query: 51 --------------AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIR 96
KS ++S+LAARK+AR +QK GFP +F +FKIQNIV C FP+
Sbjct: 168 TVTIFQSGKIISLGTKSVEESRLAARKFARKLQKFGFPVRFLNFKIQNIVAFCQT-FPVD 226
Query: 97 LEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156
L L H SYEPE++ GL+ + I + +F +G I + GAK E F+ I
Sbjct: 227 LAELQKVHRGQCSYEPEMYNGLVLD-QITGIRVSLFSTGYINVFGAKTWAEVNEVFKTIC 285
Query: 157 PVLTEFRK 164
+L E+++
Sbjct: 286 RILREYKR 293
>gi|126466212|ref|YP_001041321.1| transcription factor [Staphylothermus marinus F1]
gi|126015035|gb|ABN70413.1| TATA binding protein of transcription factor TFIID [Staphylothermus
marinus F1]
Length = 196
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 90/171 (52%), Gaps = 26/171 (15%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
L + ++NIV+TV LD LDL I + N Y P
Sbjct: 11 LRPTTKIENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGK 70
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKS QQ A +K ++++K G K +IQNIV S D+ I LE AY
Sbjct: 71 MVVTGAKSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLL 130
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
S YEPE FPGLI+RM++P++VLLIF SGK+VITGAK E TA NI
Sbjct: 131 ED-SMYEPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVETAVRNI 180
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KI+NIV + + + L L S SY+P+ FPGLI R+++PK LIF SGK+V+T
Sbjct: 16 KIENIVATVILDQSLDL-NLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVT 74
Query: 141 GAKVRDETYTAFENIYPVLTEF 162
GAK + A + I +L ++
Sbjct: 75 GAKSTQQLIDAVKKIIKLLRKY 96
>gi|221487067|gb|EEE25313.1| TATA-box binding protein, putative [Toxoplasma gondii GT1]
Length = 549
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 9/122 (7%)
Query: 47 VC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VC G SE L A K R +KL +DFKI+N+V S D P+RLEGLA+ H
Sbjct: 433 VCPAGPNSESLVLLEAEKNKRT-KKLCL----RDFKIENVVASADCGVPVRLEGLAFEHK 487
Query: 106 AFSSYEPELFPGLIYRMKQP---KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
FSSYEPELF GL+YR K VLL+FVSGK+VITG K E FE++YPVL +
Sbjct: 488 EFSSYEPELFSGLVYRYNPTASLKAVLLVFVSGKVVITGCKSLSEVNHVFESLYPVLVRY 547
Query: 163 RK 164
+
Sbjct: 548 HQ 549
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 81 KIQNIVGSCDVKFP-------------IRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI 127
++QN+V S V + + L LA S F+ Y P I R++ PK
Sbjct: 301 EVQNVVASARVTWSSAALDANWKQEVKLDLRHLAIS-CRFAEYNPRKINACIVRLRNPKC 359
Query: 128 VLLIFVSGKIVITGAKVRDETYTA 151
+L+F SG+++ITGA+ E A
Sbjct: 360 TVLVFRSGRLIITGARSDTEAERA 383
>gi|237831569|ref|XP_002365082.1| TATA-box binding protein, putative [Toxoplasma gondii ME49]
gi|211962746|gb|EEA97941.1| TATA-box binding protein, putative [Toxoplasma gondii ME49]
Length = 549
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 9/122 (7%)
Query: 47 VC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VC G SE L A K R +KL +DFKI+N+V S D P+RLEGLA+ H
Sbjct: 433 VCPAGPNSESLVLLEAEKNKRT-KKLCL----RDFKIENVVASADCGVPVRLEGLAFEHK 487
Query: 106 AFSSYEPELFPGLIYRMKQP---KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
FSSYEPELF GL+YR K VLL+FVSGK+VITG K E FE++YPVL +
Sbjct: 488 EFSSYEPELFSGLVYRYNPTASLKAVLLVFVSGKVVITGCKSLSEVNHVFESLYPVLVRY 547
Query: 163 RK 164
+
Sbjct: 548 HQ 549
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 81 KIQNIVGSCDVKFP-------------IRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKI 127
++QN+V S V + + L LA S F+ Y P I R++ PK
Sbjct: 301 EVQNVVASARVTWSSAALDANWKQEVKLDLRHLAIS-CRFAEYNPRKINACIVRLRNPKC 359
Query: 128 VLLIFVSGKIVITGAKVRDETYTA 151
+L+F SG+++ITGA+ E A
Sbjct: 360 TVLVFRSGRLIITGARSDTEAERA 383
>gi|410916287|ref|XP_003971618.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V+T C+LDL I + +N Y PK +C GA
Sbjct: 13 ISNVVATFTTGCRLDLHTIGSKGKNVIYKPKQGTVTMQLRKPRITANIWASGKVICIGAS 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +KL AR+ AR +QKLGF F FK+ N++ +C + F I L + ++YEP
Sbjct: 73 SEADAKLGARRIARCLQKLGFGVTFGTFKVVNVMATCSMPFKISLVDFTMMNRFRATYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EL P +Y MK+PK + + +G + I A A +++YP+L+E R+
Sbjct: 133 ELHPAALYTMKEPKATIKAYATGSVTIL-APSMGNVAAAVQHVYPLLSECRR 183
>gi|170035005|ref|XP_001845362.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167876820|gb|EDS40203.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 429
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 23/149 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L+L+ IA + N E+ + CTGA
Sbjct: 266 INNVVCSFSVRCHLNLRDIAQKGFNVEFRRENGMVTMKLRRPYTTASIWSSGKITCTGAT 325
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+Y+R +QKLGF +F++F+I N++G+C + + I + + + +SYEP
Sbjct: 326 SEDSAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYEP 385
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
EL PG+ Y++ PK L IF +G I +TG
Sbjct: 386 ELHPGVTYKLYNPKATLKIFSTGSITVTG 414
>gi|345312931|ref|XP_001513505.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Ornithorhynchus anatinus]
Length = 170
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 84/158 (53%), Gaps = 42/158 (26%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL CKLDLK+IALQARNAEYNPK
Sbjct: 15 GTVPQLQNIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 74
Query: 47 VCTGAKSEQQSK---LAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
VCTG++ + AR R + F+D I S + P R +
Sbjct: 75 VCTGSQKRPTGNVFLVDARDGDRALATF----SFRDVSTVKISLS---RPPDRDD----- 122
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+YEPELFPGLIYRM +P+IVLLIFVSGK+V+TG
Sbjct: 123 ---IPTYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 157
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 19 QLQNIVSTVNLACKLDLKRIAL-QARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 77
Query: 141 GAKVR 145
G++ R
Sbjct: 78 GSQKR 82
>gi|440300791|gb|ELP93238.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 201
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 14/158 (8%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNA--------EYNPKVCTGAKSEQQSKLAARKYARI 67
+ N+VST L+ +LDL++I A ++ + VCTG +S ++SK+AA+
Sbjct: 43 IANVVSTFQLNQQLDLRQIVKSAISSLKSTALILKTGKIVCTGTRSIEESKIAAK----T 98
Query: 68 IQKLGF-PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPK 126
I+K+G+ +F +F + I SCD+KF I L L S+ YEPE+FP L++R QPK
Sbjct: 99 IKKIGYNEVRFSNFNVHTI-RSCDIKFQISLRPLYDSNTDMCQYEPEVFPVLVFRTTQPK 157
Query: 127 IVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ LL+F +GK+V+TGAK + TA+ I P+L +K
Sbjct: 158 VTLLVFSTGKVVLTGAKDDENLNTAYTKICPILLANKK 195
>gi|347523992|ref|YP_004781562.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
gi|343460874|gb|AEM39310.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
Length = 207
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV LD LDL I N EYNP+ V TGA
Sbjct: 28 IENIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLVFRLEEPKVTALIFKSGKMVVTGA 87
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS QQ A +K R +++ G + +IQNIV S ++ + LE A + S Y
Sbjct: 88 KSTQQLIEAVKKIIRELKRHGIVIVGRPKVQIQNIVASANLNVCVDLEKAALTLEN-SMY 146
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
EPE FPGLIYRM+ P++VLLIF SGK+VITGAK +E A NI L + R ++
Sbjct: 147 EPEQFPGLIYRMQNPRVVLLIFSSGKMVITGAKREEEVKEAVYNIRDTLAKMRALR 202
>gi|195143693|ref|XP_002012832.1| GL23716 [Drosophila persimilis]
gi|194101775|gb|EDW23818.1| GL23716 [Drosophila persimilis]
Length = 640
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 23/171 (13%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-----------PKV-----------CTGAKS 53
++N+V + N+ C+LDL IA + N +Y+ P CTG S
Sbjct: 241 IRNVVCSFNVGCQLDLSDIAQRGFNVKYHRSRNLTMKLRRPAATALIWSSGRINCTGTTS 300
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113
E +K+AAR++AR + KLGFP +F++F+I+ ++G+C + + I + + H + EPE
Sbjct: 301 EILAKVAARRFARCLWKLGFPTRFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQEPE 360
Query: 114 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ + Y+M+ PK L IF +G I + A V + +A +IYP + EFRK
Sbjct: 361 MHWCVTYKMQMPKATLKIFTTGSITVMAASV-NLVESAIGHIYPPVREFRK 410
>gi|145591042|ref|YP_001153044.1| transcription factor [Pyrobaculum arsenaticum DSM 13514]
gi|379004488|ref|YP_005260160.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
gi|145282810|gb|ABP50392.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
arsenaticum DSM 13514]
gi|375159941|gb|AFA39553.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
Length = 201
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+ +A + AEYNP
Sbjct: 5 GPTYRIENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKM 64
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAK+E+ K A R ++++ G F + ++QNIV S ++ + LE A
Sbjct: 65 VATGAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLML 123
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM P++V+LIF SGKIV TGAK + TA + +Y L E
Sbjct: 124 ENAMYEPEQFPGLIYRMTNPRVVILIFGSGKIVCTGAKSERDVATAVQKLYNQLKEL 180
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ NL ++DL++ L NA Y P+ VCTGA
Sbjct: 101 VQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMTNPRVVILIFGSGKIVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K +++LG
Sbjct: 161 KSERDVATAVQKLYNQLKELG 181
>gi|40288403|gb|AAR84226.1| TATA-binding protein [Toxoplasma gondii]
Length = 187
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 9/122 (7%)
Query: 47 VC-TGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VC G SE L A K R +KL +DFKI+N+V S D P+RLEGLA+ H
Sbjct: 71 VCPAGPNSESLVLLEAEKNKRT-KKLCL----RDFKIENVVASADCGVPVRLEGLAFEHK 125
Query: 106 AFSSYEPELFPGLIYRMKQP---KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
FSSYEPELF GL+YR K VLL+FVSGK+VITG K E FE++YPVL +
Sbjct: 126 EFSSYEPELFLGLVYRYNPTASLKAVLLVFVSGKVVITGCKSLSEVNHVFESLYPVLVRY 185
Query: 163 RK 164
+
Sbjct: 186 HQ 187
>gi|83764126|emb|CAJ12158.1| trf2 protein [Drosophila simulans]
Length = 196
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 23/133 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + ++ C L L+ IALQ N EY + CTGA
Sbjct: 64 INNVVCSFSVGCHLKLRDIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGAT 123
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +SYEP
Sbjct: 124 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 183
Query: 113 ELFPGLIYRMKQP 125
EL PG+ Y+M+ P
Sbjct: 184 ELHPGVTYKMRDP 196
>gi|14423938|sp|P58177.1|TBP_PYROC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|13752554|gb|AAK38723.1|AF367981_1 TATA-binding protein [Pyrodictium occultum]
Length = 199
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 95/178 (53%), Gaps = 26/178 (14%)
Query: 14 SSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCT 49
++++NIV+TV+LD LDL I EYNP+ V T
Sbjct: 21 ANIENIVATVSLDQTLDLNLIERSILTVEYNPEQFPGLVYRLDSPKVTALIFKSGKMVVT 80
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
GAKS + A +K R ++K G + +IQNIV S ++ + LE A + S
Sbjct: 81 GAKSTRDLIEAVKKIVRNLKKHGIQIYGRPKVQIQNIVASANLNVCVDLERAALTLEN-S 139
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
YEPE FPGLI+RM +P++VLLIF SGK+VITGAK +E Y A IY L + R ++
Sbjct: 140 MYEPEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKLRAIR 197
>gi|14423943|sp|Q9UWN7.1|TBP_SULAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|6578935|gb|AAF18138.1|AF205428_1 TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
AV +++NIV+TV LD LDL + N EY+P V
Sbjct: 10 AVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 69
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TGAKS + A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 70 VTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN 129
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM +P++VLLIF SGK+VITGAK DE + A + I+ L E
Sbjct: 130 -NMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVEL 184
>gi|288931352|ref|YP_003435412.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
gi|288893600|gb|ADC65137.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
Length = 183
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +DL KIA + ++AEY PK VCTG+
Sbjct: 8 IENVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLVLRTKDPKAAALVFRSGKVVCTGS 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + ++ A ++ II+ LG D ++QNIV S D+ + L +A G +
Sbjct: 68 KSVEDARRAVKQVVNIIKSLGIEVYDDPDVRVQNIVASADLGVDLNLNAIAVGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR++ P++V+LIF SGK+VITG K ++ A E I
Sbjct: 128 YEPEQFPGLVYRLRDPRVVVLIFGSGKMVITGGKKPEDAKRAVEKI 173
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 77 FKDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
KD+KI +N+V S + I L +A + Y+P+ FPGL+ R K PK L+F S
Sbjct: 1 MKDYKIKIENVVASTQIGENIDLNKIAREI-KDAEYKPKQFPGLVLRTKDPKAAALVFRS 59
Query: 135 GKIVITGAKVRDETYTAFENIYPVL 159
GK+V TG+K ++ A + + ++
Sbjct: 60 GKVVCTGSKSVEDARRAVKQVVNII 84
>gi|38492428|pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|38492429|pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|1419209|emb|CAA64405.1| box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
AV +++NIV+TV LD LDL + N EY+P V
Sbjct: 11 AVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 70
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TGAKS + A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 71 VTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN 130
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM +P++VLLIF SGK+VITGAK DE + A + I+ L E
Sbjct: 131 -NMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVEL 185
>gi|380487589|emb|CCF37941.1| together with the TAF protein TBP belongs to the TFIID complex
[Colletotrichum higginsianum]
Length = 118
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 64/86 (74%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KIQNIV S D KFPIRLEG+A + SYEPELFPGL+YR++ PK+V+L+F SGK+V+T
Sbjct: 18 KIQNIVSSFDCKFPIRLEGIAVAKFGSVSYEPELFPGLVYRLQVPKVVVLMFASGKVVLT 77
Query: 141 GAKVRDETYTAFENIYPVLTEFRKVQ 166
GAK +++ AF+ I P L FR +
Sbjct: 78 GAKSKEDISGAFDAIRPWLQSFRVIH 103
>gi|298712244|emb|CBJ26695.1| transcription initiation factor TFIID [Ectocarpus siliculosus]
Length = 214
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 30/178 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+ +TVN+ +D +A + R+AEYNPK V TGA
Sbjct: 35 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGA 94
Query: 52 KSEQQSKLAARKYARIIQKLGF-----PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
+ ++ AA+++ +++ +G P + + F +QN+V + +V PI LE +AY
Sbjct: 95 AGVEAAREAAQRFVAVVEGVGLNPTTNPNQLR-FAVQNMVATFEVDAPISLELMAYCQAR 153
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ YEPELFPGLIY+ +V +F SG++V+TG K D A + P+L ++R+
Sbjct: 154 WCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 211
>gi|284161184|ref|YP_003399807.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
gi|284011181|gb|ADB57134.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
Length = 184
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +DL KIA + +A+Y PK VCTG+
Sbjct: 9 IENVVASTQIGENIDLNKIAREIPDADYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGS 68
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + ++ ++ +I+ LG P + + K+QNIV S D+ + L +A G +
Sbjct: 69 KSVEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLENVE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR++ P++V+LIF SGK+V+TG K D+ A E I
Sbjct: 129 YEPEQFPGLVYRLRDPRVVVLIFGSGKMVVTGGKTPDDARRAVEKI 174
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 78 KDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135
+DFKI +N+V S + I L +A + Y+P+ FPGL+ R K+PK LIF SG
Sbjct: 3 RDFKIKIENVVASTQIGENIDLNKIAREI-PDADYKPKQFPGLVLRTKEPKAAALIFRSG 61
Query: 136 KIVITGAK 143
K+V TG+K
Sbjct: 62 KVVCTGSK 69
>gi|348565514|ref|XP_003468548.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cavia
porcellus]
Length = 165
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 23/149 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
EL P + YR+K + L IF +G I +TG
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|297527104|ref|YP_003669128.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
gi|297256020|gb|ADI32229.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
Length = 196
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK----------------------- 46
L + ++NIV+TV +D LDL I + N Y P
Sbjct: 11 LRPTTKIENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGK 70
Query: 47 -VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSH 104
V TGAKS QQ A +K ++++K G K +IQNIV S D+ I LE AY
Sbjct: 71 MVVTGAKSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLL 130
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
S YEPE FPGLI+RM++P++VLLIF SGK+VITGAK E A NI
Sbjct: 131 ED-SMYEPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVEMAVRNI 180
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KI+NIV + + + L L S SY+P+ FPGLI R+++PK LIF SGK+V+T
Sbjct: 16 KIENIVATVIIDQSLDL-NLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVT 74
Query: 141 GAKVRDETYTAFENIYPVLTEF 162
GAK + A + I +L ++
Sbjct: 75 GAKSTQQLIDAVKKIIKLLRKY 96
>gi|429216623|ref|YP_007174613.1| TATA-box binding protein [Caldisphaera lagunensis DSM 15908]
gi|429133152|gb|AFZ70164.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Caldisphaera lagunensis DSM 15908]
Length = 209
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 94/177 (53%), Gaps = 26/177 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV LD LDL I + + +YNP V TGA
Sbjct: 31 IENIVATVILDTPLDLNLIETRIPDVDYNPDQFPGLVYRLQSPKITALIFKSGKMVVTGA 90
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS +Q A + + + G P + K +IQNIV S ++ + LE A++ S Y
Sbjct: 91 KSVKQLVWAVKTILKKLMIKGVPMQGKPQIQIQNIVASANLNVDVDLEKAAFTLPK-SMY 149
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
EPE FPGLIYRM++P++VLLIF SGK+VITGAK E A IY +L + +++
Sbjct: 150 EPEQFPGLIYRMEKPRVVLLIFSSGKMVITGAKRESEVQDAVNGIYNILKGNKSIKE 206
>gi|159041771|ref|YP_001541023.1| transcription factor [Caldivirga maquilingensis IC-167]
gi|157920606|gb|ABW02033.1| 2-alkenal reductase [Caldivirga maquilingensis IC-167]
Length = 194
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 26/175 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++NIV+TVNL LDL+++A AEYNP VC
Sbjct: 6 VYRIENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTGKMVC 65
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE + K A + + + + G + D ++QNIV S ++ + +E A
Sbjct: 66 TGAKSEDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALLL-EN 124
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
S YEPE FPGLIYRM PK+V+L+F SGKIV TGAK + A +Y L E
Sbjct: 125 SMYEPEQFPGLIYRMSDPKVVILVFSSGKIVCTGAKKEADVAVAVRKLYDKLKEI 179
>gi|352681411|ref|YP_004891935.1| Box A binding protein [Thermoproteus tenax Kra 1]
gi|269990956|emb|CAP46909.1| TATA-box binding protein [Thermoproteus tenax Kra 1]
gi|350274210|emb|CCC80855.1| TATA-box binding protein (Box A binding protein) (TBP)
[Thermoproteus tenax Kra 1]
Length = 203
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+++A + AEYNP
Sbjct: 8 GPTHKIENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGKM 67
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAK+E K A +++ G + ++QNIV S + + LE A
Sbjct: 68 VCTGAKNETDLKNAVHALVKLLNDNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLLD 127
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM +P++V+LIF SGKIV TGAK + A + +Y L E
Sbjct: 128 N-AMYEPEQFPGLIYRMTEPRVVVLIFGSGKIVCTGAKSEKDVAVAVQRLYDRLKEL 183
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ +L+ ++DL++ AL NA Y P+ VCTGA
Sbjct: 104 VQNIVASGSLNAEVDLEQAALLLDNAMYEPEQFPGLIYRMTEPRVVVLIFGSGKIVCTGA 163
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ +A ++ +++LG
Sbjct: 164 KSEKDVAVAVQRLYDRLKELG 184
>gi|112980821|gb|ABI29192.1| TATA box binding protein [Sus scrofa]
Length = 65
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 54/62 (87%)
Query: 103 SHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F
Sbjct: 2 THQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGF 61
Query: 163 RK 164
RK
Sbjct: 62 RK 63
>gi|118638408|gb|ABL09363.1| TATA-box binding protein, partial [Mus musculus]
Length = 64
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 54/62 (87%)
Query: 103 SHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+TGAKVR E Y AFENIYP+L F
Sbjct: 1 THQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGF 60
Query: 163 RK 164
RK
Sbjct: 61 RK 62
>gi|24638240|sp|Q971V3.2|TBP_SULTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 29/186 (15%)
Query: 2 LPYICYLILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK--------------- 46
+P I Y AV +++NIV+TV LD LDL + N EY+P
Sbjct: 4 IPEIPY---KAVVNIENIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVT 60
Query: 47 ---------VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIR 96
V TGAKS + A ++ + +++ G K +IQNIV S ++ +
Sbjct: 61 SLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVN 120
Query: 97 LEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156
L+ A+ + YEPE FPGLIYRM+ P++VLLIF SGK+VITGAK +E + A + I+
Sbjct: 121 LDKAAFLLEN-NMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIF 179
Query: 157 PVLTEF 162
L E
Sbjct: 180 DKLVEL 185
>gi|149032878|gb|EDL87733.1| rCG41948, isoform CRA_b [Rattus norvegicus]
gi|149032879|gb|EDL87734.1| rCG41948, isoform CRA_b [Rattus norvegicus]
Length = 218
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
EL P + YR+K + L IF +G I +T
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|328719261|ref|XP_003246709.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Acyrthosiphon pisum]
gi|328719263|ref|XP_003246710.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 288
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 25/173 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGA 51
++ N+ ++ N+ L+L+ +AL N EY + VC G+
Sbjct: 55 NISNVSASFNVKSHLNLRYLALHGHNVEYKREKAKLVMKLRKPSATAIIWSSGKIVCIGS 114
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
SE SK+A+++ ARIIQ+LG+ AKF FKI N++GSC + F IR+ + + S Y
Sbjct: 115 ASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINVLGSCSLPFSIRIIQFSEKYKLNSQY 174
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPEL PG+ YR+K+ K L I+ +G I + A A E+IYP++ F+
Sbjct: 175 EPELNPGVTYRIKEFKATLKIYSTGSITV-NASSEAIVQLAIEHIYPLVLPFK 226
>gi|315427150|dbj|BAJ48765.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|315427168|dbj|BAJ48782.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|343485784|dbj|BAJ51438.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+VS+V L KLDL +I + EY P VCTG
Sbjct: 10 EIQNVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKSE++S A R + ++K GF + + +IQNIV S D+ I LE A +
Sbjct: 70 AKSEEESIRAVRTVVKALKKEGFVIREEPQIEIQNIVASIDLHGRIDLERAATTLENVM- 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLIYRM PK+V+L+F SGK+V TGAK + Y A + +L E
Sbjct: 129 YEPEQFPGLIYRMNSPKVVILMFASGKLVCTGAKYEKDVYDAVNKLQQLLEE 180
>gi|21706933|gb|AAH33926.1| Tbpl1 protein [Mus musculus]
Length = 188
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN------------PKV-----------CTGAK 52
+ N+V C L+L+KIAL+ N Y P++ CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGAT 72
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+++K AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEP
Sbjct: 73 SEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEP 132
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
EL P + YR+K + L IF +G I +T
Sbjct: 133 ELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|327311063|ref|YP_004337960.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
gi|326947542|gb|AEA12648.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
Length = 207
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G ++NIV+TVNL +LDL+++A + AEYNP
Sbjct: 8 GPTHKIENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKM 67
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAK+E K A +++ G + ++QNIV S + + LE A
Sbjct: 68 VCTGAKNENDLKNAVHALVKLLNDHGANVPLNPEVQVQNIVASGSLNAEVDLEQAALLL- 126
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM P++V+LIF SGKIV TGAK + A + +Y L E
Sbjct: 127 ENAMYEPEQFPGLIYRMTDPRVVVLIFGSGKIVCTGAKSEKDVAVAVQQLYDKLREI 183
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV++ +L+ ++DL++ AL NA Y P+ VCTGA
Sbjct: 104 VQNIVASGSLNAEVDLEQAALLLENAMYEPEQFPGLIYRMTDPRVVVLIFGSGKIVCTGA 163
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ +A ++ ++++G
Sbjct: 164 KSEKDVAVAVQQLYDKLREIG 184
>gi|118431620|ref|NP_148219.2| transcription factor [Aeropyrum pernix K1]
gi|152031704|sp|Q9YAT1.3|TBP_AERPE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116062944|dbj|BAA80867.2| TATA-box binding protein [Aeropyrum pernix K1]
Length = 203
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 90/171 (52%), Gaps = 26/171 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV L+ +LDL I + ++ +YNP V TGA
Sbjct: 25 IENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIFKSGKMVITGA 84
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS Q +K + G P K +IQNIV S ++K I LE A S Y
Sbjct: 85 KSINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEKAALEFEN-SLY 143
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
EPE FPGLIYRM +P++V+LIF SGK+VITGAK+ +E Y A + + L E
Sbjct: 144 EPEQFPGLIYRMDEPRVVMLIFSSGKMVITGAKMENEVYDAVKKVARKLKE 194
>gi|394774083|gb|AFN37232.1| TATA-box binding protein [Aphis glycines]
Length = 149
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 59/91 (64%), Gaps = 24/91 (26%)
Query: 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------ 46
G V ++NIVSTVNL C+LDLK IAL ARNAE+NPK
Sbjct: 59 GVVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKM 118
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKF 77
VCTGAKSE+ S+LAARKYARIIQKL FPAKF
Sbjct: 119 VCTGAKSEEDSRLAARKYARIIQKLSFPAKF 149
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QNIV + ++ + L+ +A H + + P+ F +I R+++P+ LIF SGK+V T
Sbjct: 63 QLQNIVSTVNLGCRLDLKTIAL-HARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCT 121
Query: 141 GAKVRDETYTA 151
GAK +++ A
Sbjct: 122 GAKSEEDSRLA 132
>gi|302347997|ref|YP_003815635.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
gi|302328409|gb|ADL18604.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
Length = 207
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 92/174 (52%), Gaps = 26/174 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V +++NIV+TV L+ LDL I + + +YNP V
Sbjct: 30 VVNIENIVATVILENTLDLNLIEARIPDVDYNPDQFPGLVYRLQSPKITALVFKSGKMVV 89
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKS +Q A + + G + + +IQNIV S ++ + LE A+
Sbjct: 90 TGAKSVKQLVWAVKAILKKFITKGIVIQGRPQIQIQNIVASANLNVVVDLEKAAFVL-PH 148
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM +P++VLLIF SGK+VITGAK +E Y A NIY +L E
Sbjct: 149 SMYEPEQFPGLIFRMDKPRVVLLIFSSGKMVITGAKRENEVYEAVNNIYKILDE 202
>gi|161528106|ref|YP_001581932.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407462144|ref|YP_006773461.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|160339407|gb|ABX12494.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407045766|gb|AFS80519.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 186
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + EY+P VC
Sbjct: 7 IVSVENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG+KSE+ ++ A + + ++K G K KD +IQNIV S ++ I LE A +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIKVK-KDAVVEIQNIVASINLGGKIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|329764826|ref|ZP_08256418.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|340344477|ref|ZP_08667609.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|393796672|ref|ZP_10380036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138693|gb|EGG42937.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|339519618|gb|EGP93341.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + EY+P VC
Sbjct: 7 IVSVENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG+KSE+ ++ A + + ++K G K KD +IQNIV S ++ I LE A +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIKVK-KDATVEIQNIVASINLGGKIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|198429838|ref|XP_002128047.1| PREDICTED: similar to TBP-like factor [Ciona intestinalis]
Length = 471
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 25/177 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEY------------NPK-----------VCTGA 51
SV N+VS+ + C L+L++IAL+ + Y NPK VCTG+
Sbjct: 277 SVCNVVSSFRVHCHLNLRQIALEGMDVVYRRETQKVVMRMRNPKCTAYMWSSGKIVCTGS 336
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH-GAFSSY 110
S Q ++ +A+++AR + K+GF KF +F++ N++ C + + I + A ++ G SY
Sbjct: 337 SSAQYARQSAKRFARRLLKIGFKVKFAEFRVVNVLAVCKMPYAIDINEFAKANRGRHCSY 396
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
EPEL PG+ +R K L IF +G + +T V ++ A +YP+ EF + ++
Sbjct: 397 EPELHPGVTFRESTTKATLKIFSTGSVTVTARSV-EKAKNAIRTVYPMFQEFYRFEK 452
>gi|167042577|gb|ABZ07300.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW133I6]
Length = 186
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 28/180 (15%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++D ++DL +I + + EY+P VC
Sbjct: 7 IVSIENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TGAKSE S+ A + + ++K G K KD IQNIV S ++ I LE A +
Sbjct: 67 TGAKSETMSRKAVKLVVQQLRKGGIKIK-KDAVVTIQNIVASINLGGRIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E + +Q
Sbjct: 125 RSMYEPEQFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHSLLEEKKLMQ 184
>gi|82471113|gb|ABB77562.1| TATA-box binding protein [Phytophthora parasitica]
Length = 104
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 90 DVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 149
D++FPIRLEGL H FSSYEPE FPGLIY++ +PK+ LLIFVSGKIV+ GA+ + +
Sbjct: 1 DIRFPIRLEGLLNDHARFSSYEPEPFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLH 60
Query: 150 TAFENIYPVLTEFRKV 165
A + +YPVL ++RK+
Sbjct: 61 QAIDKMYPVLLQYRKM 76
>gi|72133443|ref|XP_798726.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 325
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 24/171 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
+ N+V + C L+L++I N EY + TG
Sbjct: 102 INNVVCAFGVRCHLNLRRIGQYGSNVEYRREYGKVNMRFRRPSATATIWSSGKITITGND 161
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
SE+ +K AR+ AR +QKLGF + +K+ N++G+C + F IR+ + H +SYEP
Sbjct: 162 SEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNSASYEP 221
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EL P + Y++ QP+ L IF +G I +T V + + A E IYP++ R
Sbjct: 222 ELHPAVTYKLYQPRATLKIFSTGSITVTAPAVGNIS-EAIEFIYPLVEAHR 271
>gi|156937779|ref|YP_001435575.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
gi|156566763|gb|ABU82168.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
Length = 207
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQ-ARNAEYNPK------------------------VCTG 50
++NIV+TV++D +DL+KI + N EY+P V TG
Sbjct: 13 IENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVVTG 72
Query: 51 AKSEQQSKLAARKYARIIQKLGF-PAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AKS Q+ A +K I++ G K + +IQNIV S ++ + LE AY S
Sbjct: 73 AKSTQELITAVKKIFYILKSKGIVSGKVRPRIQIQNIVASANLGVEVHLEKAAYLL-ENS 131
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLIYR+ +P++VLL+F SGK+V+TGAK +E A E ++ L E
Sbjct: 132 MYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVTGAKKEEEVSKAVEKVFQNLKE 184
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
KI+NIV + + I LE + + Y+P+ FPGLI+R+++P++ LIF SGK+V+
Sbjct: 11 IKIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVV 70
Query: 140 TGAKVRDETYTAFENIYPVL 159
TGAK E TA + I+ +L
Sbjct: 71 TGAKSTQELITAVKKIFYIL 90
>gi|222481286|ref|YP_002567522.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454662|gb|ACM58925.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ +D +LDL+ + AE+NP VCTGA
Sbjct: 10 IQNVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A +++LG P + +QNIV S D+ + + L LA G
Sbjct: 70 ASVDDVHEALEIIFEKLRELGIPVTDSPEITVQNIVSSADLGYDLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM+ P +V+L+F SGKIVITG K ++ A ENI
Sbjct: 130 YEPEQFPGLVYRMEDPGVVILLFGSGKIVITGGKFAEDATAAVENI 175
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFV 133
A + +IQN+V S + + LE L GA + P+ FPGL+ R + PK LIF
Sbjct: 3 APTETIEIQNVVASTGIDQELDLETLVDDIPGA--EFNPDNFPGLVDRTQDPKAAALIFR 60
Query: 134 SGKIVITGAKVRDETYTAFENIYPVLTEF 162
SGKIV TGA D+ + A E I+ L E
Sbjct: 61 SGKIVCTGAASVDDVHEALEIIFEKLREL 89
>gi|296109497|ref|YP_003616446.1| TATA-box binding family protein [methanocaldococcus infernus ME]
gi|295434311|gb|ADG13482.1| TATA-box binding family protein [Methanocaldococcus infernus ME]
Length = 187
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 26/175 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+++AL NAEY +PKV CTGAKS
Sbjct: 8 NVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCTGAKS 67
Query: 54 EQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
+++++ A +K + ++ GF + K+QN+V + D+ F L +A + + YEP
Sbjct: 68 KEEAERAIKKIIKELKDAGFDVNENPEIKVQNMVATADLGFEPDLNEIAI-YVDETEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A E I + E ++++
Sbjct: 127 EQFPGLVYRLNDPKVVVLIFGSGKVVITGLKSEEDAKKALEKIKETIREIQEMED 181
>gi|305663395|ref|YP_003859683.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
gi|304377964|gb|ADM27803.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
Length = 218
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 88/172 (51%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV++D +DL + N EY+P V TGA
Sbjct: 12 IENIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLVFRLESPKVTALIFRSGRMVVTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS A ++ R + K P K +IQNIV S ++ I LE +A+ + Y
Sbjct: 72 KSTADLIKAVKRIVRTLLKYDIPITSKPRIQIQNIVASANLGSEIMLEKVAFLLEN-TMY 130
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGLIYRM P +VLL+F SGK+VITGAK +E + A N+Y L E
Sbjct: 131 EPEQFPGLIYRMTDPHVVLLVFSSGKMVITGAKSEEEVFQAVRNLYLKLKEL 182
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
KI+NIV + V I L+ L Y+P+ FPGL++R++ PK+ LIF SG++V+T
Sbjct: 11 KIENIVATVSVDQTIDLDYLDKVLPNVE-YDPDQFPGLVFRLESPKVTALIFRSGRMVVT 69
Query: 141 GAKVRDETYTAFENIYPVLTEF 162
GAK + A + I L ++
Sbjct: 70 GAKSTADLIKAVKRIVRTLLKY 91
>gi|118576418|ref|YP_876161.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118194939|gb|ABK77857.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
SV+N+V++ ++D K+DL +I + EY+P VCTG
Sbjct: 9 SVENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
+KSE+ ++ A + + ++K G K + +IQNIV S ++ I LE A + S
Sbjct: 69 SKSEEMARKAVKTVVQKLRKGGIKVKKEAVVEIQNIVASINLGGKIHLEQAARTL-PRSM 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 128 YEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|11497985|ref|NP_069209.1| transcription factor [Archaeoglobus fulgidus DSM 4304]
gi|6647869|sp|O29874.1|TBP_ARCFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2650259|gb|AAB90862.1| transcription initiation factor IID [Archaeoglobus fulgidus DSM
4304]
Length = 183
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +DL KI+ + +++EY PK VCTG+
Sbjct: 8 IENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCTGS 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + ++ A ++ ++++++G + K+QNIV S D+ + L +A G +
Sbjct: 68 KSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ P++V+LIF SGK+V+TG K ++ A E I
Sbjct: 128 YEPEQFPGLVYRLDNPRVVVLIFGSGKMVVTGGKSPEDARKAVERI 173
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
KI+N+V S + I L ++ S Y+P+ FPGL+ R K+PK L+F SGK+V
Sbjct: 6 IKIENVVASTQIGENIDLNKISREI-KDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVC 64
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TG+K ++ A + I +L E
Sbjct: 65 TGSKSVEDARRAVKQIVKMLKEI 87
>gi|167042151|gb|ABZ06885.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW93E5]
Length = 186
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++D ++DL +I + + EY+P VC
Sbjct: 7 IVSIENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TGAKSE S+ A + + ++K G K KD IQNIV S ++ I LE A +
Sbjct: 67 TGAKSETMSRKAVKLVVQQLRKGGIKIK-KDAVVTIQNIVASINLGGRIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHSLLEE 179
>gi|161899533|ref|XP_001712992.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
gi|75756487|gb|ABA27380.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
Length = 204
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 26/160 (16%)
Query: 10 LGAVS-SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
LG ++ + N+V +V LD LDLKKIAL+++N E+N K
Sbjct: 13 LGDIAYKIHNVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLIMRSRDPKATAIVFKSG 72
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYS 103
+CTGAKSE+ K A K+ +II+ GF K ++++I NI + D K PI L + +
Sbjct: 73 SMICTGAKSEKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIA 132
Query: 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
+ +EPE+ GL+Y K+++ I+ SGKI ITGAK
Sbjct: 133 FPRITKHEPEVHRGLLYYPFDTKLLVTIYASGKITITGAK 172
>gi|119719211|ref|YP_919706.1| TATA-box binding [Thermofilum pendens Hrk 5]
gi|119524331|gb|ABL77703.1| TATA binding protein of transcription factor TFIID [Thermofilum
pendens Hrk 5]
Length = 142
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGAKSE + + A + ++++ G K + ++QNIV S ++K + LE A+
Sbjct: 20 VCTGAKSEAEVQKAVKSIIKLLKAHGIDIKNEPVIEVQNIVASANLKASVDLERAAFLL- 78
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLIYRM+ PK+VLLIF SGK+V TGAK +E A E IY +L E
Sbjct: 79 ENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCTGAKKEEEVKRAVEKIYNILKE 134
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 24/84 (28%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V V+NIV++ NL +DL++ A N+ Y P+ VC
Sbjct: 53 VIEVQNIVASANLKASVDLERAAFLLENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVC 112
Query: 49 TGAKSEQQSKLAARKYARIIQKLG 72
TGAK E++ K A K I+++ G
Sbjct: 113 TGAKKEEEVKRAVEKIYNILKEQG 136
>gi|374325915|ref|YP_005084115.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
gi|356641184|gb|AET31863.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
Length = 186
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 87/165 (52%), Gaps = 26/165 (15%)
Query: 23 VNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSK 58
+NL +LDL+++A + AEYNP VCTGAK+E+ K
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLK 60
Query: 59 LAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPG 117
A R ++++ G F + +IQNIV S ++ + LE A + YEPE FPG
Sbjct: 61 NAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENAMYEPEQFPG 119
Query: 118 LIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
LIYRM P++V+LIF SGKIV TGAK + TA + +Y L +
Sbjct: 120 LIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYAQLKDL 164
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 24/81 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL ++DL++ L NA Y P+ VCTGA
Sbjct: 85 IQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGA 144
Query: 52 KSEQQSKLAARKYARIIQKLG 72
KSE+ A +K ++ LG
Sbjct: 145 KSEKDVATAVQKLYAQLKDLG 165
>gi|149032877|gb|EDL87732.1| rCG41948, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 23/137 (16%)
Query: 27 CKLDLKKIALQARNAEYN------------PKV-----------CTGAKSEQQSKLAARK 63
C L+L+KIAL+ N Y P++ CTGA SE+++K AR+
Sbjct: 44 CHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARR 103
Query: 64 YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMK 123
AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYEPEL P + YR+K
Sbjct: 104 LARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIK 163
Query: 124 QPKIVLLIFVSGKIVIT 140
+ L IF +G I +T
Sbjct: 164 SLRATLQIFSTGSITVT 180
>gi|448736860|ref|ZP_21718941.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445805544|gb|EMA55752.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 203
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
A V+N+V + L+ ++DLK +AL A+++P+
Sbjct: 24 ATLEVQNVVVSSTLNQEIDLKSVALDLTGADFDPEQFPGVIYRPESAEATCLIFRSGKIT 83
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
CTGA S + ++ + ++ LG + +QNIV D+ + LE +A G
Sbjct: 84 CTGAGSIEGARETVQATVETVRGLGIDVEEPTVTVQNIVSDADLGEELNLEAIAIGLGLE 143
Query: 108 S-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGLIYR+ +P V+L+F +GK VITGA+ +D+ A + I L+E
Sbjct: 144 DIEYEPEQFPGLIYRLDEPDTVVLLFGTGKTVITGAETQDDAEEALKTIIDRLSEL 199
>gi|320100857|ref|YP_004176449.1| TATA-binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
gi|319753209|gb|ADV64967.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
Length = 193
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 85/165 (51%), Gaps = 26/165 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV+TV L+ LDL+ I + + Y P V TG
Sbjct: 13 VENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGT 72
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS QQ A +K ++ K G + + +IQNIV D+ + LE AY H S Y
Sbjct: 73 KSTQQLVEAVKKIIKVFMKSGVDVRGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSMY 131
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
EPE FPGLI+RM+ P++VLLIF SGK+VITGAK E A NI
Sbjct: 132 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEESEVERAVVNI 176
>gi|448732580|ref|ZP_21714852.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445804522|gb|EMA54773.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 191
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
A +N+V++ + ++DL+ +A+ A+++P
Sbjct: 12 ATLETQNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPDDAKATCLIFRSGAIT 71
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
CTGA+S ++ + + +LG + D +QNIV D+ + L +A G
Sbjct: 72 CTGAQSIEEVQETVHTAVGALVELGIDVEAPDVTVQNIVSGADLGETLNLNAIAIGLGLE 131
Query: 108 S-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
S YEPE FPGL+YR+ P +V L+F SGK+VITGAK+ DE A E I L + V
Sbjct: 132 SVEYEPEQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDEAEAALEEIIRRLNDLGLV 190
>gi|288559645|ref|YP_003423131.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
gi|288542355|gb|ADC46239.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
Length = 181
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAKS SKLA +K +++ + P +F D KIQNIV S +++ + LE +A
Sbjct: 63 VCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-DIKIQNIVASANLQSTLNLEAVALEL 121
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK + + EN L+E
Sbjct: 122 -ENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTKQDARLGVENAKARLSEL 178
>gi|289193261|ref|YP_003459202.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
gi|288939711|gb|ADC70466.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
Length = 180
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 26/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL+++A+ NAEY P+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + +++ G + D KIQN+V + D+ L+ +A + YEP
Sbjct: 69 KEEAEIAIKKVIKELKEAGMDVIENPDIKIQNMVATADLGIEPNLDDIALMVEG-TEYEP 127
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A + I + E +++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQEL 180
>gi|336121024|ref|YP_004575799.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
gi|334855545|gb|AEH06021.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
Length = 181
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 27 CKLDLKKIALQA-RNAEYNPKVCTGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQN 84
C+L K+AL R+ + N CTGAKS++++++A +K +++ GF + + K+QN
Sbjct: 44 CRLSEPKVALLIFRSGKLN---CTGAKSKEEAEIAIKKVIGYLKEAGFEIDENPEVKVQN 100
Query: 85 IVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144
+V + ++ L+ +A G + YEPE FPGL+YR+ PK+V+LIF SGK+VITG K
Sbjct: 101 MVATAELGIEPNLDDIATLEG--TEYEPEQFPGLVYRLDNPKVVVLIFGSGKVVITGLKH 158
Query: 145 RDETYTAFENIYPVLTEFRK 164
+++ Y A E I L E +
Sbjct: 159 KEDAYIALEKILNTLKEMEE 178
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
D KI N+V S + I LE Y+ + YEPE FPGL+ R+ +PK+ LLIF SGK
Sbjct: 4 DIKIVNVVVSTKIGNDIDLE---YAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGAK ++E A + + L E
Sbjct: 61 LNCTGAKSKEEAEIAIKKVIGYLKE 85
>gi|148642780|ref|YP_001273293.1| transcription factor [Methanobrevibacter smithii ATCC 35061]
gi|222445725|ref|ZP_03608240.1| hypothetical protein METSMIALI_01367 [Methanobrevibacter smithii
DSM 2375]
gi|261349727|ref|ZP_05975144.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
gi|166227821|sp|A5UL47.1|TBP_METS3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|148551797|gb|ABQ86925.1| transcription initiation factor TFIID TATA binding protein
[Methanobrevibacter smithii ATCC 35061]
gi|222435290|gb|EEE42455.1| transcription factor [Methanobrevibacter smithii DSM 2375]
gi|288861682|gb|EFC93980.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
Length = 181
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH 104
VCTGAKS SKLA +K +++ + P +F + KIQNIV S +++ + LE +A
Sbjct: 63 VCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-EIKIQNIVASANLESTLNLEAVALEL 121
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK R + E Y L+E
Sbjct: 122 ED-TEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTRSDAKLGVERAYDRLSEL 178
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
D KI+NIV S + I L ++ + + + E FPGL++++K PK LIF SGK+V
Sbjct: 5 DIKIENIVASASIGKDIVLTEVSEALEGVN-FNREQFPGLVFKLKDPKTAALIFSSGKLV 63
Query: 139 ITGAKVRDETYTAF 152
TGAK D++ A
Sbjct: 64 CTGAKSIDDSKLAI 77
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL+ L+L+ +AL+ + EY P+ VCTGA
Sbjct: 99 IQNIVASANLESTLNLEAVALELEDTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGA 158
Query: 52 KSEQQSKLAA-RKYARI 67
K+ +KL R Y R+
Sbjct: 159 KTRSDAKLGVERAYDRL 175
>gi|448540133|ref|ZP_21623370.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551731|ref|ZP_21629465.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448553994|ref|ZP_21630784.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445710007|gb|ELZ61830.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710121|gb|ELZ61943.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445719179|gb|ELZ70861.1| transcription factor [Haloferax sp. ATCC BAA-644]
Length = 188
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A +LG P D +QNIV S D+ + L LA G +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + TA E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVSDAETALETV 177
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGK+V
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNG-TDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ TE
Sbjct: 69 TGADSVDDVSTAIETLFDEFTEL 91
>gi|157277622|emb|CAL47127.1| trf2 protein [Drosophila simulans]
gi|157277624|emb|CAL47128.1| trf2 protein [Drosophila simulans]
gi|157277626|emb|CAL47129.1| trf2 protein [Drosophila simulans]
gi|157277628|emb|CAL47130.1| trf2 protein [Drosophila simulans]
gi|157277630|emb|CAL47131.1| trf2 protein [Drosophila simulans]
gi|157277632|emb|CAL47132.1| trf2 protein [Drosophila simulans]
gi|157277634|emb|CAL47133.1| trf2 protein [Drosophila simulans]
gi|157277636|emb|CAL47134.1| trf2 protein [Drosophila simulans]
gi|157277638|emb|CAL47135.1| trf2 protein [Drosophila simulans]
gi|157277640|emb|CAL47136.1| trf2 protein [Drosophila simulans]
gi|157277642|emb|CAL47137.1| trf2 protein [Drosophila simulans]
gi|157277644|emb|CAL47138.1| trf2 protein [Drosophila simulans]
gi|157277646|emb|CAL47139.1| trf2 protein [Drosophila simulans]
gi|157277648|emb|CAL47140.1| trf2 protein [Drosophila simulans]
gi|157277650|emb|CAL47141.1| trf2 protein [Drosophila simulans]
gi|157277652|emb|CAL47142.1| trf2 protein [Drosophila simulans]
gi|157277654|emb|CAL47143.1| trf2 protein [Drosophila simulans]
gi|157277656|emb|CAL47144.1| trf2 protein [Drosophila simulans]
gi|157277658|emb|CAL47145.1| trf2 protein [Drosophila simulans]
gi|157277660|emb|CAL47146.1| trf2 protein [Drosophila simulans]
gi|157277662|emb|CAL47147.1| trf2 protein [Drosophila simulans]
gi|157277664|emb|CAL47148.1| trf2 protein [Drosophila simulans]
gi|157277666|emb|CAL47149.1| trf2 protein [Drosophila simulans]
gi|157277668|emb|CAL47150.1| trf2 protein [Drosophila simulans]
gi|157277670|emb|CAL47151.1| trf2 protein [Drosophila simulans]
gi|317418075|emb|CBN74043.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418077|emb|CBN74046.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418079|emb|CBN74054.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418081|emb|CBN74061.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418083|emb|CBN74066.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418085|emb|CBN74068.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418087|emb|CBN74069.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418089|emb|CBN74072.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418091|emb|CBN74076.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418093|emb|CBN74087.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418095|emb|CBN74094.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418097|emb|CBN74098.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418099|emb|CBN74102.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418101|emb|CBN74103.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418103|emb|CBN74104.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418105|emb|CBN74105.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418107|emb|CBN74106.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418109|emb|CBN74107.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418111|emb|CBN74108.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418113|emb|CBN74109.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418115|emb|CBN74110.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418117|emb|CBN74111.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418119|emb|CBN74112.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418121|emb|CBN74113.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418123|emb|CBN74114.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418125|emb|CBN74115.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418127|emb|CBN74116.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418129|emb|CBN74117.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418131|emb|CBN74118.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418133|emb|CBN74119.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418135|emb|CBN74138.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418137|emb|CBN74148.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418139|emb|CBN74152.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418141|emb|CBN74155.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418143|emb|CBN74168.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418145|emb|CBN74173.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418147|emb|CBN74175.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418149|emb|CBN74176.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418151|emb|CBN74179.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418153|emb|CBN74183.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418155|emb|CBN74186.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418157|emb|CBN74190.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418159|emb|CBN74193.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418161|emb|CBN74222.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418163|emb|CBN74230.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418165|emb|CBN74244.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418167|emb|CBN74245.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418169|emb|CBN74246.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418171|emb|CBN74247.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418173|emb|CBN74248.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418175|emb|CBN74249.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418177|emb|CBN74250.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418179|emb|CBN74251.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418181|emb|CBN74252.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418183|emb|CBN74253.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418185|emb|CBN74254.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418187|emb|CBN74255.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|317418189|emb|CBN74256.1| TATA box binding protein-related factor 2 [Drosophila simulans]
gi|440584980|emb|CCI79962.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584982|emb|CCI79963.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584984|emb|CCI79964.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584986|emb|CCI79965.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584988|emb|CCI79966.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584990|emb|CCI79967.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584992|emb|CCI79968.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584994|emb|CCI79969.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584996|emb|CCI79970.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440584998|emb|CCI79971.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585000|emb|CCI79972.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585002|emb|CCI79973.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585004|emb|CCI79974.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585006|emb|CCI79975.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585008|emb|CCI79976.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585010|emb|CCI79977.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585012|emb|CCI79978.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585014|emb|CCI79979.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585016|emb|CCI79980.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585018|emb|CCI79981.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585020|emb|CCI79982.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585022|emb|CCI79983.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585024|emb|CCI79984.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585026|emb|CCI79985.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585028|emb|CCI79986.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585030|emb|CCI79987.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585032|emb|CCI79988.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585034|emb|CCI79989.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585036|emb|CCI79990.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585038|emb|CCI79991.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585040|emb|CCI79992.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585042|emb|CCI79993.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585044|emb|CCI79994.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585046|emb|CCI79995.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585048|emb|CCI79996.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585050|emb|CCI79997.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585052|emb|CCI79998.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585054|emb|CCI79999.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585056|emb|CCI80000.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585058|emb|CCI80001.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585060|emb|CCI80002.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585062|emb|CCI80003.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585064|emb|CCI80004.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585066|emb|CCI80005.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585068|emb|CCI80006.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585070|emb|CCI80007.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585072|emb|CCI80008.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585074|emb|CCI80009.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585076|emb|CCI80010.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585078|emb|CCI80011.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585080|emb|CCI80012.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585082|emb|CCI80013.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585084|emb|CCI80014.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585086|emb|CCI80015.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585088|emb|CCI80016.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585090|emb|CCI80017.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585092|emb|CCI80018.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585094|emb|CCI80019.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585096|emb|CCI80020.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585098|emb|CCI80021.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585100|emb|CCI80022.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585102|emb|CCI80023.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585104|emb|CCI80024.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585106|emb|CCI80025.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585108|emb|CCI80026.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585110|emb|CCI80027.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585112|emb|CCI80028.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585114|emb|CCI80029.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585116|emb|CCI80030.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585118|emb|CCI80031.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585120|emb|CCI80032.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585122|emb|CCI80033.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585124|emb|CCI80034.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585126|emb|CCI80035.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585128|emb|CCI80036.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585130|emb|CCI80037.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585132|emb|CCI80038.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585134|emb|CCI80039.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585136|emb|CCI80040.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585138|emb|CCI80041.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585140|emb|CCI80042.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585142|emb|CCI80043.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585144|emb|CCI80044.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585146|emb|CCI80045.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585148|emb|CCI80046.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585150|emb|CCI80047.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585152|emb|CCI80048.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585154|emb|CCI80049.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585156|emb|CCI80050.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585158|emb|CCI80051.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585160|emb|CCI80052.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585162|emb|CCI80053.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585164|emb|CCI80054.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585166|emb|CCI80055.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585168|emb|CCI80056.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585170|emb|CCI80057.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585172|emb|CCI80058.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585174|emb|CCI80059.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585176|emb|CCI80060.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585178|emb|CCI80061.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585180|emb|CCI80062.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585182|emb|CCI80063.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585184|emb|CCI80064.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585186|emb|CCI80065.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585188|emb|CCI80066.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585190|emb|CCI80067.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585192|emb|CCI80068.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585194|emb|CCI80069.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585196|emb|CCI80070.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585198|emb|CCI80071.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585200|emb|CCI80072.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585202|emb|CCI80073.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585204|emb|CCI80074.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585206|emb|CCI80075.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585208|emb|CCI80076.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585210|emb|CCI80077.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585212|emb|CCI80078.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585214|emb|CCI80079.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585216|emb|CCI80080.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585218|emb|CCI80081.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585220|emb|CCI80082.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585222|emb|CCI80083.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585226|emb|CCI80085.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585228|emb|CCI80086.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585230|emb|CCI80087.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585232|emb|CCI80088.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585234|emb|CCI80089.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585236|emb|CCI80090.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585238|emb|CCI80091.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585240|emb|CCI80092.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585242|emb|CCI80093.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585244|emb|CCI80094.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585246|emb|CCI80095.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585248|emb|CCI80096.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585250|emb|CCI80097.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585252|emb|CCI80098.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585254|emb|CCI80099.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585256|emb|CCI80100.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585258|emb|CCI80101.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585260|emb|CCI80102.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585262|emb|CCI80103.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585264|emb|CCI80104.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585266|emb|CCI80105.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585268|emb|CCI80106.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585270|emb|CCI80107.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585272|emb|CCI80108.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585274|emb|CCI80109.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585276|emb|CCI80110.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585278|emb|CCI80111.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585280|emb|CCI80112.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585282|emb|CCI80113.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585284|emb|CCI80114.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585286|emb|CCI80115.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585288|emb|CCI80116.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585290|emb|CCI80117.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585292|emb|CCI80118.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585294|emb|CCI80119.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585296|emb|CCI80120.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585298|emb|CCI80121.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440585300|emb|CCI80122.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586198|emb|CCI80523.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586200|emb|CCI80524.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586202|emb|CCI80525.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586204|emb|CCI80526.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586206|emb|CCI80527.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586208|emb|CCI80528.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586210|emb|CCI80529.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586212|emb|CCI80530.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586214|emb|CCI80531.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586216|emb|CCI80532.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586218|emb|CCI80533.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586220|emb|CCI80534.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586222|emb|CCI80535.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586224|emb|CCI80536.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586226|emb|CCI80537.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586228|emb|CCI80538.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586230|emb|CCI80539.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586232|emb|CCI80540.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586234|emb|CCI80541.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586236|emb|CCI80542.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586238|emb|CCI80543.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586240|emb|CCI80544.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586242|emb|CCI80545.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586244|emb|CCI80546.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586246|emb|CCI80547.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586248|emb|CCI80548.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586250|emb|CCI80549.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586252|emb|CCI80550.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586254|emb|CCI80551.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586256|emb|CCI80552.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586258|emb|CCI80553.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586260|emb|CCI80554.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586262|emb|CCI80555.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586264|emb|CCI80556.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586266|emb|CCI80557.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586268|emb|CCI80558.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586270|emb|CCI80559.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586272|emb|CCI80560.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586274|emb|CCI80561.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586276|emb|CCI80562.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586278|emb|CCI80563.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586280|emb|CCI80564.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586282|emb|CCI80565.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586284|emb|CCI80566.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586286|emb|CCI80567.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586288|emb|CCI80568.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586290|emb|CCI80569.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586292|emb|CCI80570.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586294|emb|CCI80571.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586296|emb|CCI80572.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586298|emb|CCI80573.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586300|emb|CCI80574.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586302|emb|CCI80575.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586304|emb|CCI80576.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586306|emb|CCI80577.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586308|emb|CCI80578.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586310|emb|CCI80579.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586312|emb|CCI80580.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586314|emb|CCI80581.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586316|emb|CCI80582.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586318|emb|CCI80583.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586320|emb|CCI80584.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586322|emb|CCI80585.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586324|emb|CCI80586.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586326|emb|CCI80587.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586328|emb|CCI80588.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586330|emb|CCI80589.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586332|emb|CCI80590.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586334|emb|CCI80591.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586336|emb|CCI80592.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586338|emb|CCI80593.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586340|emb|CCI80594.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586342|emb|CCI80595.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586344|emb|CCI80596.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586346|emb|CCI80597.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586348|emb|CCI80598.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586350|emb|CCI80599.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586352|emb|CCI80600.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586354|emb|CCI80601.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586356|emb|CCI80602.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586358|emb|CCI80603.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586360|emb|CCI80604.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586362|emb|CCI80605.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586364|emb|CCI80606.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586366|emb|CCI80607.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586368|emb|CCI80608.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586370|emb|CCI80609.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586372|emb|CCI80610.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586374|emb|CCI80611.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586376|emb|CCI80612.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586378|emb|CCI80613.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586380|emb|CCI80614.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586382|emb|CCI80615.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586384|emb|CCI80616.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586386|emb|CCI80617.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586388|emb|CCI80618.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586390|emb|CCI80619.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586392|emb|CCI80620.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586394|emb|CCI80621.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586396|emb|CCI80622.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586398|emb|CCI80623.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586400|emb|CCI80624.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586402|emb|CCI80625.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586404|emb|CCI80626.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586406|emb|CCI80627.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586408|emb|CCI80628.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586410|emb|CCI80629.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586412|emb|CCI80630.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586414|emb|CCI80631.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586416|emb|CCI80632.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586418|emb|CCI80633.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586420|emb|CCI80634.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586422|emb|CCI80635.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586424|emb|CCI80636.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586426|emb|CCI80637.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586428|emb|CCI80638.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586430|emb|CCI80639.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586432|emb|CCI80640.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
gi|440586434|emb|CCI80641.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
Length = 102
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
GA SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +S
Sbjct: 1 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 60
Query: 110 YEPELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKV 144
YEPEL PG+ Y+M+ PK L IF +G + +T A V
Sbjct: 61 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV 97
>gi|118575298|ref|YP_875041.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118193819|gb|ABK76737.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL + + + EYNP+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLVFRLTSPKTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TGAKSE + A R + ++K G K KD +QNIV + ++ I LE A
Sbjct: 67 TGAKSEDMAVKAVRTVVQKLRKSGIKIK-KDAVVVVQNIVAAINLGGKIHLEKAARVL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDMYRSVYNLHALLEE 179
>gi|407463138|ref|YP_006774455.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046760|gb|AFS81513.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 187
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE+ +A + ++QKL K K+ +QNIV + ++ I LE A +
Sbjct: 67 TGAKSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ VL E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
>gi|161529027|ref|YP_001582853.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
gi|160340328|gb|ABX13415.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
Length = 187
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE+ +A + ++QKL K K+ +QNIV + ++ I LE A +
Sbjct: 67 TGAKSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ VL E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
>gi|14424468|sp|Q55031.2|TBP_SULSH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 26/175 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIV+TV L+ LDL + N EY+P V
Sbjct: 11 IVNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVV 70
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKS ++ A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 71 TGAKSTEELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN- 129
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK DE A + I+ L E
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAEL 184
>gi|16517082|gb|AAL24503.1|AF418015_1 TATA box-binding protein-like protein [Crypthecodinium cohnii]
Length = 220
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 27/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKS 53
I++ NL C++DL+++A R+AEYNP+ TG
Sbjct: 47 TIMAKFNLRCEIDLRQLAFALRHAEYNPRKHSSLTLRLVEPRATAMVRSSGVVSITGVLD 106
Query: 54 EQQSKLAARKYARIIQKLGF---PAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+ K +A+K AR++Q+ G KF F I +I+ + FPIRL+ LA + Y
Sbjct: 107 LDELKQSAKKVARLVQRSGEGHEKVKFAGFTICSILAKASMGFPIRLDQLAAKWRRNALY 166
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
EPEL+ G I+R +PK L+ GK++I+G + ++ + A + IYP+L EF+
Sbjct: 167 EPELYCGCIFRTTRPKCTYLLTSGGKVMISGFRNMEDVHEAVQRIYPILAEFK 219
>gi|116753474|ref|YP_842592.1| transcription factor [Methanosaeta thermophila PT]
gi|121693723|sp|A0B5H8.1|TBP_METTP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116664925|gb|ABK13952.1| TATA binding protein of transcription factor TFIID [Methanosaeta
thermophila PT]
Length = 183
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 27/160 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTG 50
+++N+V++ L + DL KI + AEYN PK VCTG
Sbjct: 6 NIENVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVCTG 65
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKF--KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AK+ + + AR ++ +GF + +QNIV S D+K + L +A G +
Sbjct: 66 AKNVEDVRTVITNMARTLKSIGFDNINLEPEIHVQNIVASADLKTDLNLNAIALGLGLEN 125
Query: 109 -SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YR+KQPK+V+LIF SGK+V+TG K +E
Sbjct: 126 IEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVVTGGKSPEE 165
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 80 FKIQNIVGSCD-------VKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIF 132
I+N+V S VK LEG + Y E FPGL+YR+K PK LIF
Sbjct: 5 INIENVVASTKLADEFDLVKIESELEG--------AEYNKEKFPGLVYRVKSPKAAFLIF 56
Query: 133 VSGKIVITGAKVRDETYTAFENIYPVL 159
SGK+V TGAK ++ T N+ L
Sbjct: 57 TSGKVVCTGAKNVEDVRTVITNMARTL 83
>gi|886020|gb|AAC43403.1| TATA-binding protein homolog; Method: conceptual translation
supplied by author, partial [Sulfolobus shibatae]
Length = 198
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 26/175 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIV+TV L+ LDL + N EY+P V
Sbjct: 11 IVNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVV 70
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKS ++ A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 71 TGAKSTEELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN- 129
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK DE A + I+ L E
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAEL 184
>gi|14423939|sp|P58178.1|TBP_SULSO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 26/175 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ +++NIV+TV L+ LDL + N EY+P V
Sbjct: 11 IVNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVV 70
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKS ++ A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 71 TGAKSTEELIKAVKRIIKTLKKYGIKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN- 129
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK DE A + I+ L E
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAEL 184
>gi|407464492|ref|YP_006775374.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407047680|gb|AFS82432.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++ K+DL +I + EY+P VC
Sbjct: 7 IVSVENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG+KSE+ ++ A + + ++K G K KD IQNIV S ++ I LE A +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIKVK-KDAVVTIQNIVASINLGGKIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKQEPDVYRSVNNLHALLEE 179
>gi|386875594|ref|ZP_10117754.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386806582|gb|EIJ66041.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++ K+DL +I + EY+P VC
Sbjct: 7 IVSVENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG+KSE+ ++ A + + ++K G K KD IQNIV S ++ I LE A +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIKVK-KDAVVTIQNIVASINLGGKIHLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKHEPDVYRSVNNLHALLEE 179
>gi|389847270|ref|YP_006349509.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614785|ref|ZP_21663813.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244576|gb|AFK19522.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445752872|gb|EMA04291.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 186
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 26/167 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A +++L P + + +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHDALEIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +PK+V+L+F SGKIVITG K D+ TA E I
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + A E I+ L E +
Sbjct: 67 TGAKSIDDVHDALEIIFDKLRELQ 90
>gi|440585224|emb|CCI80084.1| TATA box binding protein-related factor 2, partial [Drosophila
simulans]
Length = 102
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
GA SE +K+AAR+YAR + KLGFP +F +F+I N++G+C + + I++ + H +S
Sbjct: 1 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 60
Query: 110 YEPELFPGLIYRMK--QPKIVLLIFVSGKIVITGAKV 144
YEPEL PG+ Y+M+ PK L IF G + +T A V
Sbjct: 61 YEPELHPGVTYKMRDPDPKATLKIFSPGSVTVTAASV 97
>gi|14423942|sp|Q9P9I9.1|TBP_METTL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor;
AltName: Full=aTBP
gi|6723836|emb|CAB66385.1| archaeal transcription factor TBP [Methanothermococcus
thermolithotrophicus]
Length = 181
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 27/172 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ A NAEY +PKV CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++ +++A +K + ++ G + +QN+V + D+ L+ ++ G + YEP
Sbjct: 69 KEDAEIAIKKIIKELKDAGMDIIDNPEVNVQNMVATADLGIEPNLDDISTLEG--TEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E FPGL+YR+ PK+V+LIF SGK+VITG K +D+ Y A + I L E +
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKKDDAYLALDKILSTLKELEE 178
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ KI N+V S + I LE Y+ + YEPE FPGL+ R+ PK+ LLIF SGK
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE---YAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENI 155
+ TGAK +++ A + I
Sbjct: 61 LNCTGAKSKEDAEIAIKKI 79
>gi|393796700|ref|ZP_10380064.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 187
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 28/173 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
S+ N+V++ +D K DL I + + EY+P VCTG
Sbjct: 9 SIVNVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
+KSE+ ++ A + + ++K G K KD +QNIV S ++ + LE A + S
Sbjct: 69 SKSEEMARSAVKTVVQKLRKEGVKVK-KDAVVTVQNIVASINLGGKVHLEKAARTL-PRS 126
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+LIF SGK+V TGAK + + + N++ +L E
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLEE 179
>gi|324509203|gb|ADY43873.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 438
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKVC------------TGA 51
++N+V T L +DL ++AL N + NP +C G
Sbjct: 194 IRNVVCTYTLPLHIDLHRVALNCGNVTFDRGRGVLLKQKRNP-LCYVKVYSSGKIYIVGC 252
Query: 52 KSEQQSKLAARKYARIIQK-LGFPA---KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
+SE + K AAR AR++QK +G A + ++++I N++ +C + F I++E +A +
Sbjct: 253 RSEAECKRAARGVARMVQKSMGKQADVVRIRNYRICNVLATCKMPFGIKIEEMAQKYPEN 312
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
S YEPEL GL++R PK L I +G I +TGA + A E IYP+L EFR
Sbjct: 313 SDYEPELSVGLVWRSVDPKATLRIHTTGSITVTGALSEADVMKAIEVIYPILREFR 368
>gi|304313987|ref|YP_003849134.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587446|gb|ADL57821.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
Length = 181
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++NIV++ L +DL+ +A N ++N PK VCTGA
Sbjct: 8 IENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + SK A + +++ + P +F + KIQNIV S ++ P+ LE +A +
Sbjct: 68 KSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNLEAVALGL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGAK ++ E L E
Sbjct: 126 YEPEQFPGLVYRLDEPKVVLLLFGSGKVVCTGAKSAEDAKLGVEKTKARLAEL 178
>gi|329764975|ref|ZP_08256562.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138512|gb|EGG42761.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 28/173 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
S+ N+V++ +D K DL I + + EY+P VCTG
Sbjct: 9 SIVNVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
+KSE+ ++ A + + ++K G K KD +QNIV S ++ + LE A + S
Sbjct: 69 SKSEEMARNAVKTVVQKLRKEGVKVK-KDAVVTVQNIVASINLGGKVHLEKAARTL-PRS 126
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+LIF SGK+V TGAK + + + N++ +L E
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLEE 179
>gi|324505039|gb|ADY42170.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 512
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKVC------------TGA 51
++N+V T L +DL ++AL N + NP +C G
Sbjct: 268 IRNVVCTYTLPLHIDLHRVALNCGNVTFDRGRGVLLKQKRNP-LCYVKVYSSGKIYIVGC 326
Query: 52 KSEQQSKLAARKYARIIQK-LGFPA---KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
+SE + K AAR AR++QK +G A + ++++I N++ +C + F I++E +A +
Sbjct: 327 RSEAECKRAARGVARMVQKSMGKQADVVRIRNYRICNVLATCKMPFGIKIEEMAQKYPEN 386
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
S YEPEL GL++R PK L I +G I +TGA + A E IYP+L EFR
Sbjct: 387 SDYEPELSVGLVWRSVDPKATLRIHTTGSITVTGALSEADVMKAIEVIYPILREFR 442
>gi|448604603|ref|ZP_21657770.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448624485|ref|ZP_21670433.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445744012|gb|ELZ95492.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445749690|gb|EMA01132.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 186
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A +++L P + + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHDALGIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +PK+V+L+F SGKIVITG K D+ TA E I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + A I+ L E +
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELQ 90
>gi|448591939|ref|ZP_21651314.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445733228|gb|ELZ84803.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 29/176 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ ++ +LDLK ++L EYNP VCTGA
Sbjct: 12 IQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S + A + LG P + + +QNIV S D++ + L LA G
Sbjct: 72 DSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLEDVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
YEPE FPGL+YR+++P +V+L+F SGK+VITGAK E A E I V E +K+
Sbjct: 132 YEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAK---EVAQAEEAIKVVRDEVQKL 184
>gi|256810655|ref|YP_003128024.1| transcription factor [Methanocaldococcus fervens AG86]
gi|256793855|gb|ACV24524.1| TATA-box binding family protein [Methanocaldococcus fervens AG86]
Length = 180
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 29/175 (16%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL+++A+ NAEY P+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + + KIQN+V + D+ L+ +A + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEG-TEYEP 127
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A + I L R+VQ+
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKI---LDTIREVQE 179
>gi|448576280|ref|ZP_21642323.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448591579|ref|ZP_21651067.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445729960|gb|ELZ81554.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445733553|gb|ELZ85122.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 186
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A +++L P + + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHEALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +PK+V+L+F SGKIVITG K D+ TA E I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + A I+ L E +
Sbjct: 67 TGAKSIDDVHEALGIIFDKLRELK 90
>gi|292655873|ref|YP_003535770.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433422047|ref|ZP_20405902.1| transcription factor [Haloferax sp. BAB2207]
gi|448289862|ref|ZP_21481024.1| transcription factor [Haloferax volcanii DS2]
gi|448539630|ref|ZP_21623096.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448555929|ref|ZP_21631787.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448562556|ref|ZP_21635514.1| transcription factor [Haloferax prahovense DSM 18310]
gi|448570482|ref|ZP_21639312.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448585086|ref|ZP_21647695.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|448595442|ref|ZP_21653145.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595861|sp|D4H071.1|TBP2_HALVD RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|291372685|gb|ADE04912.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432198733|gb|ELK54984.1| transcription factor [Haloferax sp. BAB2207]
gi|445581044|gb|ELY35408.1| transcription factor [Haloferax volcanii DS2]
gi|445710372|gb|ELZ62187.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445717214|gb|ELZ68934.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718874|gb|ELZ70558.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445723129|gb|ELZ74776.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445727425|gb|ELZ79038.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445742896|gb|ELZ94386.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 186
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A +++L P + + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHDALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +PK+V+L+F SGKIVITG K D+ TA E I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + A I+ L E +
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELK 90
>gi|261403691|ref|YP_003247915.1| transcription factor [Methanocaldococcus vulcanius M7]
gi|261370684|gb|ACX73433.1| TATA-box binding family protein [Methanocaldococcus vulcanius M7]
Length = 180
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 26/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL+++AL NAEY P+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + + KIQN+V + D+ L+ +A + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIEVIENPEIKIQNMVATADLGIEPNLDDIALMVEG-TEYEP 127
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A I + E +++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALNKILETIKEVQEL 180
>gi|292494314|ref|YP_003533457.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|448289408|ref|ZP_21480579.1| transcription factor [Haloferax volcanii DS2]
gi|291369097|gb|ADE01327.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|445582489|gb|ELY36830.1| transcription factor [Haloferax volcanii DS2]
Length = 188
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A +LG P D +QNIV S D+ + L LA G +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITG K + TA E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGVKRVGDAETALETV 177
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGK+V
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNG-TDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ TE
Sbjct: 69 TGADSVDDVSTAIETLFDEFTEL 91
>gi|433593266|ref|YP_007282752.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433308304|gb|AGB34114.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 194
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +L+L+ +A ++EYNP VCTGA
Sbjct: 10 IENVVASTGVGQELNLEALADDLPHSEYNPGNFPGMVHRIQDPNAVTLLFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
+S A + ++ LG + + IQNIV S D+ I L +A G +
Sbjct: 70 QSTADVTDALNILFQDLRDLGIDVVDQPEITIQNIVSSGDLGEQIDLNAIAIGLGLEHTE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V+L+F SGK+VITGAK RD +A E ++ L E
Sbjct: 130 YEPEQFPGLVYRLTSPPVVVLLFGSGKLVITGAKTRDNAQSALETVHSRLREL 182
>gi|429193145|ref|YP_007178823.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448327012|ref|ZP_21516352.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429137363|gb|AFZ74374.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445609541|gb|ELY63341.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 185
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL +A+ EY+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
AKS + A ++ L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIGLGLENIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +VLL+F SGKIVITG + D+ A + L E
Sbjct: 129 YEPEQFPGLVYRIDDPDVVLLLFGSGKIVITGGEQPDDAEQAVGQVRNRLGEL 181
>gi|19073311|gb|AAL84756.1|AF469636_1 TATA binding protein D [Halobacterium sp. GN101]
Length = 186
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ L +L L+++A A+YNP+ VCTGA
Sbjct: 10 IENVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
++ A +++LG A +QNIV S D+ P+ L +A G +
Sbjct: 70 QTVDDVHEALSIVVEDLRELGIDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEAIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V+L+F SGK+VITG D+ A E+++ LT+
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGSDPDDATVALEDVHDRLTDL 182
>gi|329766561|ref|ZP_08258104.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796800|ref|ZP_10380164.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329136816|gb|EGG41109.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 187
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE +A + ++QKL K K+ +QNIV + ++ I LE A +
Sbjct: 67 TGAKSED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSLLEE 179
>gi|15679622|ref|NP_276739.1| transcription factor [Methanothermobacter thermautotrophicus str.
Delta H]
gi|6647868|sp|O27664.1|TBP_METTH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2622753|gb|AAB86100.1| TATA-binding transcription initiation factor [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++NIV++ L +DL+ +A N ++N PK VCTGA
Sbjct: 8 IENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + SK A + +++ + P +F + KIQNIV S ++ P+ LE +A +
Sbjct: 68 KSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNLEAVALGL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK ++ E L E
Sbjct: 126 YEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSAEDAKLGVEKTKARLAEL 178
>gi|448568567|ref|ZP_21638101.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445725917|gb|ELZ77535.1| transcription factor [Haloferax lucentense DSM 14919]
Length = 188
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A +LG P D +QNIV S D+ + L LA G +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + A E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETV 177
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGK+V
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNG-TDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ TE
Sbjct: 69 TGADSVDDVSTAIETLFDEFTEL 91
>gi|15668684|ref|NP_247483.1| transcription factor [Methanocaldococcus jannaschii DSM 2661]
gi|2833518|sp|Q57930.1|TBP_METJA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1591210|gb|AAB98497.1| transcription initiation factor IID, TATA-box binding protein
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 26/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL+++A+ NAEY P+ CTGAKS
Sbjct: 12 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 71
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + + KIQN+V + D+ L+ +A + YEP
Sbjct: 72 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEG-TEYEP 130
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A + I + E +++
Sbjct: 131 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQEL 183
>gi|197305019|pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
gi|197305020|pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
gi|197305021|pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
gi|197305022|pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 26/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL+++A+ NAEY P+ CTGAKS
Sbjct: 17 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 76
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + + KIQN+V + D+ L+ +A + YEP
Sbjct: 77 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEG-TEYEP 135
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A + I + E +++
Sbjct: 136 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQEL 188
>gi|407465522|ref|YP_006776404.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048710|gb|AFS83462.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
Length = 187
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL +I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL--GFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE+ +A + ++QKL G KD +QNIV + ++ I LE A +
Sbjct: 67 TGAKSEE---MAIKAVNTVVQKLRKGKIKIKKDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHALLEE 179
>gi|399574202|ref|ZP_10767962.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
gi|399240710|gb|EJN61634.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
Length = 186
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHEALDIIFDKLRGLSIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+ TA E I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDATTAVEQI 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQNPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A + I+
Sbjct: 67 TGAKSIDDVHEALDIIF 83
>gi|448608858|ref|ZP_21660137.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445747235|gb|ELZ98691.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 186
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A +++L P + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHDALGIIFDKLRELQIPVDDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +PK+V+L+F SGKIVITG K D+ TA E I
Sbjct: 130 YEPEQFPGLVYRMDKPKVVILLFGSGKIVITGGKQTDDAATAVEEI 175
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + A I+ L E +
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELQ 90
>gi|433425962|ref|ZP_20406798.1| transcription factor [Haloferax sp. BAB2207]
gi|448594544|ref|ZP_21652891.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|432197431|gb|ELK53812.1| transcription factor [Haloferax sp. BAB2207]
gi|445744180|gb|ELZ95659.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 188
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A +LG P D +QNIV S D+ + L LA G +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + A E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETV 177
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGK+V
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNG-TDYDPENFPGLVYRTRNPKSACLVFRSGKVVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ TE
Sbjct: 69 TGADSVDDVSTAIETLFDEFTEL 91
>gi|448576731|ref|ZP_21642607.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445728919|gb|ELZ80519.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 29/176 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ ++ +LDLK ++L EYNP VCTGA
Sbjct: 12 IQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S + A + LG P + + +QNIV S D++ + L LA G
Sbjct: 72 DSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLEDVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
YEPE FPGL+YR+++P +V+L+F SGK+VITGAK E A + I V E +K+
Sbjct: 132 YEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAK---EVAQAEQAIEVVRDEVQKL 184
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ +IQN+V S ++ + L+ L+ A + Y P+ FPGL+YR PK L+F SGKI
Sbjct: 8 ESIEIQNVVASTGIEQELDLKSLSLDM-AGTEYNPDNFPGLVYRTSDPKSACLVFRSGKI 66
Query: 138 VITGAKVRDETYTAFENIYPVLTEF 162
V TGA + + A + ++ L++
Sbjct: 67 VCTGADSVEGVHAALDILFEELSDL 91
>gi|333910819|ref|YP_004484552.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
gi|333751408|gb|AEF96487.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
Length = 181
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 26/173 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL++ AL NAEY +PKV CTGAKS
Sbjct: 9 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + K+QN+V + D+ L+ +A + YEP
Sbjct: 69 KEEAEVAIKKIIKELKDAGMDIIDNPEVKVQNMVATADLGIEPNLDDIALMIEG-TEYEP 127
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
E FPGL+YR+ PK+V+LIF SGK+VITG K ++ A I L E ++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKREEDAEIALNKILETLREIEEI 180
>gi|389848878|ref|YP_006351115.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614622|ref|ZP_21663769.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388246184|gb|AFK21128.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445753956|gb|EMA05371.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 27/173 (15%)
Query: 9 ILGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK---------------------- 46
+ G+V V+N+V++ + +LDL +++L +Y+P+
Sbjct: 6 VTGSVE-VQNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACLVFRSG 64
Query: 47 --VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYS 103
VCTGA S + A + LG P + +QNIV S D+ + L LA
Sbjct: 65 KIVCTGADSVEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIG 124
Query: 104 HGAFS-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
G YEPE FPGL+YR+ P +V+L+F SGKIVITGA+ + +A E +
Sbjct: 125 LGLEDVEYEPEQFPGLVYRLDDPNVVVLMFGSGKIVITGAEAVVDAESALETV 177
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 81 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
++QN+V S +V + L+ L+ + Y+PE FPGL+YR + PK L+F SGKIV T
Sbjct: 11 EVQNVVASTEVTLELDLDRLSLDMSG-TDYDPENFPGLVYRTENPKAACLVFRSGKIVCT 69
Query: 141 GAKVRDETYTAFENIYPVLTEF 162
GA ++ TA E ++ L +
Sbjct: 70 GADSVEDVNTAIETLFDDLDDL 91
>gi|408406051|ref|YP_006864035.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408366647|gb|AFU60377.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 187
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 26/174 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++ ++L I + EY+P VC
Sbjct: 7 IVSIENVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLVFRLRSPKTATLIFSSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKSE+ + A + ++K G P + + +IQNIV S + I LE LA
Sbjct: 67 TGAKSEKMAIQAVKNVVLKLKKGGIPLEHEPQIEIQNIVASASLGGKIHLE-LAARVLPR 125
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK E Y A N++ +L E
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESEVYRAVGNLHTLLEE 179
>gi|218883586|ref|YP_002427968.1| transcription factor [Desulfurococcus kamchatkensis 1221n]
gi|218765202|gb|ACL10601.1| transcription factor - TATA-box-binding protein [Desulfurococcus
kamchatkensis 1221n]
Length = 194
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 26/165 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV+TV L+ LDL+ I + + Y P V TG
Sbjct: 12 VENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGT 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS QQ A +K + K G + +IQNIV D+ + LE AY H S Y
Sbjct: 72 KSTQQLVEAVKKIIKTFVKNGVNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSMY 130
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
EPE FPGLI+RM+ P++VLLIF SGK+VITGAK E A NI
Sbjct: 131 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNI 175
>gi|390938384|ref|YP_006402122.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
gi|390191491|gb|AFL66547.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
Length = 194
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 26/165 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+NIV+TV L+ LDL+ I + + Y P V TG
Sbjct: 12 VENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGT 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS QQ A +K + K G + +IQNIV D+ + LE AY H S Y
Sbjct: 72 KSTQQLVEAVKKIIKTFVKNGVNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSMY 130
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
EPE FPGLI+RM+ P++VLLIF SGK+VITGAK E A NI
Sbjct: 131 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNI 175
>gi|386874609|ref|ZP_10116844.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807582|gb|EIJ66966.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 187
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ ++D K+DL I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVDQKIDLITITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE+ +A + ++QKL K K+ +QNIV + ++ I LE A +
Sbjct: 67 TGAKSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHALLEE 179
>gi|256087298|ref|XP_002579809.1| TATA-binding protein-related [Schistosoma mansoni]
gi|238665296|emb|CAZ36048.1| TATA-binding protein-related [Schistosoma mansoni]
Length = 738
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 25/168 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGA 51
S+ N+V +L C L LK+IA + N EY +P CTGA
Sbjct: 66 SITNVVVMASLQCHLRLKEIARTSVNVEYKALQNHVIMRLRSPYTVATIWSSGKIWCTGA 125
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
S ++K+ AR+ AR I K GFP F +++ NI+ +C + F +RLE L SYE
Sbjct: 126 NSLAKAKIGARRIARRIAKCGFPCHFSKYRVVNIMATCKLPFGVRLEELVKERPMQMSYE 185
Query: 112 PELFPGLIYRMK-QPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158
PEL PGL ++ L +F +G+IVI G+ + D + E + P+
Sbjct: 186 PELAPGLTFKTDINSSTSLKLFSTGRIVIMGSSL-DSIGSLVEELVPI 232
>gi|167043299|gb|ABZ08004.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW141M18]
Length = 186
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++D +DLK + + E++P VC
Sbjct: 7 IVSIENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG KSE + A R + ++K K KD +QNIV S + I LE A
Sbjct: 67 TGGKSEAMAIKAVRTVVKQLRKGKIKIK-KDAVITVQNIVASGSLGGKIHLED-AARRLP 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK VLL+F SGK+V TGAK + Y + NI+ +L E
Sbjct: 125 HSMYEPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLEE 179
>gi|167044379|gb|ABZ09056.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 186
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 89/175 (50%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++D +DLK + + E++P+ VC
Sbjct: 7 IVSIENVVASASVDQAIDLKDVTKKFPETEWHPEQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG KSE + A R + ++K K KD +QNIV S + I LE A
Sbjct: 67 TGGKSEAMAIKAVRTVVKQLRKGKIKIK-KDAVITVQNIVASGSLGGKIHLED-AARRLP 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK VLL+F SGK+V TGAK + Y + NI+ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLEE 179
>gi|330507959|ref|YP_004384387.1| transcription factor TFIID [Methanosaeta concilii GP6]
gi|328928767|gb|AEB68569.1| transcription factor TFIID [Methanosaeta concilii GP6]
Length = 183
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 27/160 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ L + DL KI + AEYN + VCTG
Sbjct: 6 NIENVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVVCTG 65
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA--KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AK+ + + A+ ++ +GF + +QNIV S D+K + L +A G +
Sbjct: 66 AKNVEDVRTVITNMAQTLKSIGFENIDLEPEIHVQNIVASADLKTDLNLNAIALGLGLEN 125
Query: 109 -SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YR+K PK+V+LIF SGK+V+TG K +E
Sbjct: 126 IEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEE 165
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + L + A GA Y E FPGL+YR+K P+ LIF SGK+V
Sbjct: 5 INIENVVASTKLAEEFDLHKIEAELEGA--EYNKEKFPGLVYRVKAPRAAFLIFTSGKVV 62
Query: 139 ITGAKVRDETYTAFENIYPVL 159
TGAK ++ T N+ L
Sbjct: 63 CTGAKNVEDVRTVITNMAQTL 83
>gi|312069507|ref|XP_003137714.1| hypothetical protein LOAG_02128 [Loa loa]
gi|307767124|gb|EFO26358.1| hypothetical protein LOAG_02128 [Loa loa]
Length = 401
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
++N+V L +DL ++AL + N + NP G +
Sbjct: 158 IRNVVCNYTLPLHIDLHRVALSSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCR 217
Query: 53 SEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE K AAR AR++QK + + +++++ N++ +C + F +++E LA + S
Sbjct: 218 SESDCKRAARGVARMVQKSMGRMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCS 277
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GLI+R P+ L I +G I +TGA + A E IYP++ EFR
Sbjct: 278 QYEPELSVGLIWRSTNPRATLRIHTTGSITVTGAASESDVMKAIEVIYPIIKEFR 332
>gi|170590133|ref|XP_001899827.1| TBP-like factor [Brugia malayi]
gi|158592746|gb|EDP31343.1| TBP-like factor, putative [Brugia malayi]
Length = 403
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
++N+V L +DL ++AL + N + NP G +
Sbjct: 159 IRNVVCNYTLPLHIDLHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCR 218
Query: 53 SEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE + K AAR AR++QK + + +++++ N++ +C + F +++E LA + S
Sbjct: 219 SESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCS 278
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GLI+R P+ L I +G I +TGA + A E IYP++ EFR
Sbjct: 279 QYEPELSVGLIWRSTNPRATLRIHTTGSITVTGAASESDVMKAVEVIYPIVKEFR 333
>gi|170590131|ref|XP_001899826.1| TBP-like factor [Brugia malayi]
gi|158592745|gb|EDP31342.1| TBP-like factor, putative [Brugia malayi]
Length = 401
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
++N+V L +DL ++AL + N + NP G +
Sbjct: 157 IRNVVCNYTLPLHIDLHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCR 216
Query: 53 SEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE + K AAR AR++QK + + +++++ N++ +C + F +++E LA + S
Sbjct: 217 SESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCS 276
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GLI+R P+ L I +G I +TGA + A E IYP++ EFR
Sbjct: 277 QYEPELSVGLIWRSTNPRATLRIHTTGSITVTGAASESDVMKAVEVIYPIVKEFR 331
>gi|374636062|ref|ZP_09707646.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
gi|373560320|gb|EHP86587.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
Length = 188
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGAKS 53
N+V + + +DL++ AL NAEY P+ CTGAKS
Sbjct: 16 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCTGAKS 75
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++++++A +K + ++ G + K+QN+V + D+ L+ +A + YEP
Sbjct: 76 KEEAEVAIKKIIKELKDAGMDIIDDPEVKVQNMVATADLGIEPNLDDIALMIEG-TEYEP 134
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
E FPGL+YR+ PK+V+LIF SGK+VITG K + A I L E +++
Sbjct: 135 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKKEGDAEIALNKILETLREIEEIK 188
>gi|340345517|ref|ZP_08668649.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520658|gb|EGP94381.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 32/177 (18%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ SV+N+V++ +++ K+DL +I + + EY+P+ VC
Sbjct: 7 IVSVENVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSH 104
TGAKSE +A + ++QKL K K+ +QNIV + ++ I LE A +
Sbjct: 67 TGAKSED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTL 123
Query: 105 GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+L+F SGK+V TGAK + Y + N++ +L E
Sbjct: 124 -PRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSLLEE 179
>gi|167045405|gb|ABZ10060.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 186
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 28/175 (16%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
+ S++N+V++ ++D +DLK + + E++P VC
Sbjct: 7 IVSIENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGA 106
TG KSE + A R + ++K K KD +QNIV S + I LE A
Sbjct: 67 TGGKSEAMAIKAVRTVVKQLRKGKIKIK-KDAVITVQNIVASGSLGGKIHLED-AARRLP 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK VLL+F SGK+V TGAK + Y + NI+ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLEE 179
>gi|448567600|ref|ZP_21637525.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445711598|gb|ELZ63388.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 188
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A LG P + D +QNIV S D+ + L LA G +
Sbjct: 72 DSVDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + A + +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRTADAEAALKTV 177
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGKIV
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDG-TDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ T+
Sbjct: 69 TGADSVDDVSTAIETLFDEFTDL 91
>gi|4688630|emb|CAB41467.1| TBP-like factor [Brugia malayi]
Length = 295
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
++N+V L +DL ++AL + N + NP G +
Sbjct: 51 IRNVVCNYTLPLHIDLHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCR 110
Query: 53 SEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE + K AAR AR++QK + + +++++ N++ +C + F +++E LA + S
Sbjct: 111 SESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCS 170
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GLI+R P+ L I +G I +TGA + A E IYP++ EFR
Sbjct: 171 QYEPELSVGLIWRSTNPRATLRIHTTGSITVTGAASESDVMKAVEVIYPIVKEFR 225
>gi|424811982|ref|ZP_18237222.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756204|gb|EGQ39787.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
Length = 187
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ LD ++ L +IA+ N EY P+ VCTG
Sbjct: 14 IENVVASTTLDRRMPLDRIAIYLENTEYEPEQFPGLVYRLDEPKAAALLFGSGKVVCTGT 73
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+S Q+K A K +++ K D +QN+V S ++ + L +A+ + Y
Sbjct: 74 QSPTQAKEAVHKIIDELREADIEIGKKPDITVQNMVASSELDATLNLNRIAFEL-VGTEY 132
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGL+YR+ +PK+V L+F SG+IV TG K D+ E + L E
Sbjct: 133 EPEQFPGLVYRLDEPKVVFLLFSSGRIVCTGGKTYDDVENGIEKLKENLKEL 184
>gi|448621885|ref|ZP_21668634.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445754915|gb|EMA06309.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A LG P + D +QNIV S D+ + L LA G +
Sbjct: 72 NSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + A E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKQVADAEAALETV 177
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGKIV
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDG-TDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 140 TGAKVRDETYTAFENIY 156
TGA + TA E ++
Sbjct: 69 TGANSVGDVSTAIETLF 85
>gi|448581629|ref|ZP_21645410.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445733392|gb|ELZ84962.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 188
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A LG P + D +QNIV S D+ + L LA G
Sbjct: 72 DSVDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLEDVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGK+VITGAK + A + +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKVVITGAKRTTDAEAALKTV 177
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGK+V
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDG-TDYDPENFPGLVYRTRDPKSACLVFRSGKVVC 68
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGA D+ TA E ++ T+
Sbjct: 69 TGADSVDDVGTAIETLFDEFTDL 91
>gi|448603976|ref|ZP_21657400.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445744772|gb|ELZ96244.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 188
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL++++L +Y+P+ VCTGA
Sbjct: 12 IQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A LG P + D +QNIV S D+ + L LA G +
Sbjct: 72 NSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK + A E +
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVADAEAALETV 177
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S +V + LE L+ + Y+PE FPGL+YR + PK L+F SGKIV
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDG-TDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 140 TGAKVRDETYTAFENIY 156
TGA + TA E ++
Sbjct: 69 TGANSVGDVSTAIETLF 85
>gi|345006113|ref|YP_004808966.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344321739|gb|AEN06593.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
S++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 SIENVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAK-FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++KL P + + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDAVHESLGIVFDELRKLDIPVEDGPEITVQNIVSSADLGESLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+++P +V L+F SGK+VITG K + A + I LT+
Sbjct: 129 EYEPEQFPGLVYRLEEPDVVALLFGSGKLVITGGKTPADAEDAIDVISERLTDL 182
>gi|123395858|ref|XP_001300812.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881909|gb|EAX87882.1| hypothetical protein TVAG_285070 [Trichomonas vaginalis G3]
Length = 233
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 28/176 (15%)
Query: 16 VKNIVSTVNLDC-KLDLKKIALQARNAEYNPKVC------------------------TG 50
V N+++ C KL+L IA RNAEY PK G
Sbjct: 51 VVNVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGLVFSNGKINIVG 110
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS--HGAFS 108
+S + +K AA K+ +++Q++G+ K + I +IV + F I + +A + H F
Sbjct: 111 CRSVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQIASADGHKLFC 170
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
Y PE F GLIYR+ P+ +LIF SG IV+T AK D+ IYPVL +F K
Sbjct: 171 QYRPEKFAGLIYRLTDPQCTMLIFQSGSIVLT-AKSEDDLTAGSNWIYPVLQKFEK 225
>gi|336477906|ref|YP_004617047.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
gi|335931287|gb|AEH61828.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
Length = 183
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 26/164 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L DL KI ++ AEYN PK VCTGA
Sbjct: 8 IENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ + + AR + +G + D +QNIV S D+ + L +A G +
Sbjct: 68 KNVEDVHTVIKNMARKLNSIGVETVEDPDITVQNIVASADLHAILNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
YEPE FPGL+YR+ +PK+V+LIF SGK+V+TG K ++ E
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPEDCEMGVE 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ KI+N+V S + L + GA Y + FPGL+YR+ PK L+F SGK+
Sbjct: 5 NIKIENVVASTKLAESFDLTKIEMEFEGA--EYNKQKFPGLVYRVSDPKAAFLVFTSGKV 62
Query: 138 VITGAKVRDETYTAFENI 155
V TGAK ++ +T +N+
Sbjct: 63 VCTGAKNVEDVHTVIKNM 80
>gi|73668595|ref|YP_304610.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395757|gb|AAZ70030.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 184
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 27/156 (17%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTG 50
+V+N+V++ L DL+KI + AEYN PK VCTG
Sbjct: 6 TVENVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTG 65
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA--KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AK+ +K+A A ++ +G D IQNIV + D++ + L + + G +
Sbjct: 66 AKTVDNAKMAIINLASTLKSIGCEKINPEPDVHIQNIVATADLETNLNLNTIVIAFGMEN 125
Query: 109 -SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE+FPGL+YR++ P++V+LIF SGK+VITG K
Sbjct: 126 VEYEPEVFPGLVYRLEDPRVVVLIFSSGKLVITGGK 161
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 82 IQNIVGSCDV-------KFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
++N+V S + K RLE Y+ F PGL+YR + PK LIF S
Sbjct: 7 VENVVASTTLAEDFDLQKIEARLEKAEYNKAKF--------PGLVYRTENPKAAFLIFTS 58
Query: 135 GKIVITGAKVRDETYTAFENIYPVL 159
GK+V TGAK D A N+ L
Sbjct: 59 GKVVCTGAKTVDNAKMAIINLASTL 83
>gi|393796304|ref|ZP_10379668.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 186
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
S+ N+V++ +D KLDL I + + EY+P+ VCTG
Sbjct: 9 SIVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKS++ ++ A K +++K K + + IQNIV S ++ + LE A + S
Sbjct: 69 AKSQELAETAVAKVVSMLKKGKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTL-PRSM 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+LIF SGK+V GAK+ + + + I+ +L E
Sbjct: 128 YEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLEE 179
>gi|110668436|ref|YP_658247.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385803899|ref|YP_005840299.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109626183|emb|CAJ52639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|339729391|emb|CCC40639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 70 KSINDVHDALGIIFEKLRGLSIPVDEDPEITVQNIVSSADLGHTLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM QP++V+L+F SGKIVITG K ++ A E I
Sbjct: 130 YEPEQFPGLVYRMDQPEVVILLFGSGKIVITGGKQTNDAAAAVEEI 175
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
A +IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF S
Sbjct: 3 APADSIEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRS 61
Query: 135 GKIVITGAKVRDETYTAFENIY 156
GKIV TGAK ++ + A I+
Sbjct: 62 GKIVCTGAKSINDVHDALGIIF 83
>gi|389847604|ref|YP_006349843.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448617457|ref|ZP_21666044.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244910|gb|AFK19856.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445748377|gb|ELZ99824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +++ A+Y+P VCTGA
Sbjct: 12 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A + + KLG P + ++ IQNIV S D+ + L LA G
Sbjct: 72 SSVDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK
Sbjct: 132 YEPEQFPGLVYRIDEPSVVVLMFGSGKIVITGAK 165
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 71 LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLL 130
+ A+ + +IQN+V S V + LE L+ + Y+P+ FPGL+YR ++PK L
Sbjct: 1 MSHEARLESLEIQNVVASTAVGQELDLESLSMDL-VGADYDPDNFPGLVYRTQEPKAASL 59
Query: 131 IFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
IF SGKIV TGA D+ A E ++ L++
Sbjct: 60 IFRSGKIVCTGASSVDDVDRALEQVFGELSKL 91
>gi|313126218|ref|YP_004036488.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286060|ref|ZP_21477295.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312292583|gb|ADQ67043.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445575111|gb|ELY29590.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 186
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A ++ L P + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +P++V+L+F SGKIVITG K ++ TA E I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTNDAETAVEEI 175
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
A +IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF S
Sbjct: 3 APADSIEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRS 61
Query: 135 GKIVITGAKVRDETYTAFENIY 156
GKIV TGAK D+ + A I+
Sbjct: 62 GKIVCTGAKSIDDVHEALGIIF 83
>gi|150400624|ref|YP_001324390.1| transcription factor [Methanococcus aeolicus Nankai-3]
gi|166227819|sp|A6UTF6.1|TBP_META3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150013327|gb|ABR55778.1| TATA-box binding protein [Methanococcus aeolicus Nankai-3]
Length = 181
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 27/172 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ +A N+EY +PKV CTGAKS
Sbjct: 9 NVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++ + +A K +++ G + K+QN+V + ++ L+ L S + YEP
Sbjct: 69 KEDAVIAINKVMEYLREAGLDLIDTPEVKVQNMVATAELGMEPNLDDL--STLERTEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E FPGL+YRM+ PK+VLL+F SGK+VITG K +++ Y A E I + E +
Sbjct: 127 EQFPGLVYRMESPKVVLLVFGSGKVVITGLKNKEDAYIALEKIKNTVKELEE 178
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
+ KI N+V S + I LE +A S YEPE FPGL+ R+ PK+ LLIF SGK+
Sbjct: 4 EIKIVNVVVSTKIGDDIDLEYVADVLDN-SEYEPEQFPGLVCRLSDPKVALLIFRSGKLN 62
Query: 139 ITGAKVRDETYTAFENIYPVLTE 161
TGAK +++ A + L E
Sbjct: 63 CTGAKSKEDAVIAINKVMEYLRE 85
>gi|449067334|ref|YP_007434416.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449069604|ref|YP_007436685.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
gi|449035842|gb|AGE71268.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449038112|gb|AGE73537.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
Length = 177
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 26/165 (15%)
Query: 23 VNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSK 58
+ LD LDL + N EY+P V TGAKS +
Sbjct: 1 MTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELI 60
Query: 59 LAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPG 117
A ++ + ++K G K +IQNIV S ++ + L+ A+ + YEPE FPG
Sbjct: 61 KAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPG 119
Query: 118 LIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
LIYRM +P++VLLIF SGK+VITGAK DE + A + I+ L E
Sbjct: 120 LIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVEL 164
>gi|448610758|ref|ZP_21661425.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445744442|gb|ELZ95920.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 188
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 26/164 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
V+N+V++ + +LDL +++L + +Y+P+ VCTGA
Sbjct: 12 VQNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A + LG P IQNIV S D+ + L LA G +
Sbjct: 72 DSVTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEAVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
YEPE FPGL+YR+ +P +V+L+F SGKIVITGA+ + +A E
Sbjct: 132 YEPEQFPGLVYRLDEPNVVILMFGSGKIVITGAEAVADAESALE 175
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ ++QN+V S +V F + L+ L+ + + Y+PE FPGL+YR PK L+F SGKI
Sbjct: 8 RSVEVQNVVASTEVSFELDLDRLSLDMSS-TDYDPENFPGLVYRTHDPKAACLVFRSGKI 66
Query: 138 VITGAKVRDETYTAFENIY 156
V TGA + A E ++
Sbjct: 67 VCTGADSVTDVNAAIETLF 85
>gi|84489891|ref|YP_448123.1| transcription factor [Methanosphaera stadtmanae DSM 3091]
gi|121731087|sp|Q2NFC3.1|TBP_METST RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|84373210|gb|ABC57480.1| TATA-box binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 183
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 89/178 (50%), Gaps = 28/178 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
V+NIV++ L L+L KIA N EYN PK VCTGA
Sbjct: 8 VENIVASATLGKSLELPKIAPALENVEYNLEQFPGLVFKLKDPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
K + S A I++L P +F + KIQNIV S ++ + LE +A +
Sbjct: 68 KCIEDSIKAIHMTVDKIRELDTEIPEEF-EIKIQNIVASANLGKVLNLEAVALDL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK D+ + L E +++
Sbjct: 126 YEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTADQALLGVQKTKERLIELYLIEE 183
>gi|310752315|gb|ADP09476.1| TATA-box binding protein [uncultured marine crenarchaeote E48-1C]
Length = 186
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 26/165 (15%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
AV ++N+V++ L+ K+DL + EY P+ V
Sbjct: 6 AVIKIENVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLVFRLKRPKTATLIFNSGKMV 65
Query: 48 CTGAKSEQQSKLAARKYAR-IIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
CTGAKSE++++ A +K + + + + KIQNIV S ++ I LE S
Sbjct: 66 CTGAKSEKEARRAVKKVIKELKKGGIIIIGKPELKIQNIVASANLGGMIDLEASTLSLKK 125
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ YEPE FPGLIYRM +PK+V+L+F SGK+V TGAK Y A
Sbjct: 126 -TMYEPEQFPGLIYRMAEPKVVILLFASGKLVCTGAKREQNVYDA 169
>gi|448610180|ref|ZP_21661030.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445745539|gb|ELZ97006.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +++ A+Y+P VCTGA
Sbjct: 13 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRSGKIVCTGA 72
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A + + KLG P ++ IQNIV S D+ + L LA G
Sbjct: 73 SSVDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVE 132
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR++ P +V+L+F SGKIVITGAK
Sbjct: 133 YEPEQFPGLVYRIEDPSVVVLMFGSGKIVITGAK 166
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 71 LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLL 130
+ A+ + +IQN+V S V + LE L+ + Y+P+ FPGL+YR + PK L
Sbjct: 2 MSHEARLESLEIQNVVASTAVGQELDLESLSMDL-VGADYDPDNFPGLVYRTQDPKAASL 60
Query: 131 IFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
IF SGKIV TGA D+ A E ++ L++
Sbjct: 61 IFRSGKIVCTGASSVDDVDRALEQVFGELSKL 92
>gi|435846586|ref|YP_007308836.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433672854|gb|AGB37046.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 185
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 26/160 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + + DL+ +A NA+Y+PK VCTG
Sbjct: 9 TIENVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
+KS + + ++LG + F +QNIV S D+ + + L +A G
Sbjct: 69 SKSVEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVGLGLGQIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA-KVRDET 148
YEPE FPGL+YR+ +P +V L+F SGK VITG +V+D T
Sbjct: 129 YEPEQFPGLVYRLDEPDVVALLFGSGKTVITGGTEVQDAT 168
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
I+N+V S D L+ LA + Y+P+ FPG++YR+ +PK LIF +GK+V TG
Sbjct: 10 IENVVASGDTGREFDLQTLAEDLDN-AQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTG 68
Query: 142 AKVRDETYTAFENIY 156
+K ++ + E+I+
Sbjct: 69 SKSVEDINKSVESIF 83
>gi|297620217|ref|YP_003708322.1| TATA-box binding family protein [Methanococcus voltae A3]
gi|297379194|gb|ADI37349.1| TATA-box binding family protein [Methanococcus voltae A3]
Length = 181
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 27/172 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ A NAEY +PKV CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
+ +++A +K +++ G + IQN+V + ++ L+ + S + YEP
Sbjct: 69 KSDAEIAIKKIIAELKEAGMEIIDNPEVSIQNMVATTELGMEPNLDDI--STLECTEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E FPGL+YR+ PK+V+LIF SGK+VITG K D+ YTAF I L E +
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKIDDAYTAFNKILTTLKELEE 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ KI N+V S + I LE Y+ + YEPE FPGL+ R+ PK+ LLIF SGK
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE---YAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGAK + + A + I L E
Sbjct: 61 LNCTGAKSKSDAEIAIKKIIAELKE 85
>gi|448730744|ref|ZP_21713048.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445792921|gb|EMA43516.1| transcription factor [Halococcus saccharolyticus DSM 5350]
Length = 191
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+N+V++ + ++DL+ +A+ A+++P CTGA
Sbjct: 17 QNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPADAAATCLLFRSGKITCTGAG 76
Query: 53 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-SYE 111
S ++ + +LG + +QNIV D+ + L +A G S YE
Sbjct: 77 SIEEVHETVHVAVDALAELGIDVGTPEVTVQNIVSGADLGERLNLNAIAIGLGLESVEYE 136
Query: 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
PE FPGL+YR+ P +V L+F SGK+VITGAK+ D A E I L + V
Sbjct: 137 PEQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDNAEAALEEIIRRLNDLGLV 190
>gi|407462989|ref|YP_006774306.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046611|gb|AFS81364.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 192
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 26/175 (14%)
Query: 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------V 47
AV ++ N+V++ ++ KLDL I + + EY+P+ V
Sbjct: 6 AVIAIVNVVASATIEQKLDLVDITKKFPHVEYHPEQFPGAVFRLQEPKTATLLFGSGNMV 65
Query: 48 CTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
CTGAKSE+ + A R ++K K + IQNIV S ++ + LE A +
Sbjct: 66 CTGAKSEEMAIQAVNTVVRKLRKGRIKIKKEPKVTIQNIVSSINLGGKVNLEQAARTL-P 124
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+LIF SGK+V GAK+ E + + I+ +L E
Sbjct: 125 RSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKEIHRSVNQIHSLLEE 179
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 82 IQNIVGSCDVKFPIRLEGLA--YSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
I N+V S ++ + L + + H Y PE FPG ++R+++PK L+F SG +V
Sbjct: 10 IVNVVASATIEQKLDLVDITKKFPH---VEYHPEQFPGAVFRLQEPKTATLLFGSGNMVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEFRK 164
TGAK + A + + V+ + RK
Sbjct: 67 TGAKSEE---MAIQAVNTVVRKLRK 88
>gi|386001066|ref|YP_005919365.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
gi|357209122|gb|AET63742.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
Length = 183
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 27/160 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ L + DL KI + AEYN + VCTG
Sbjct: 6 NIENVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVVCTG 65
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AK+ + + A+ ++ +GF D +QNIV S D+K + +A G +
Sbjct: 66 AKNVEDVRTVITNMAQTLKSIGFEDVNLDPEIHVQNIVASADLKTDLNPNAIALGLGLEN 125
Query: 109 -SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YR+K PK+V+LIF SGK+V+TG K +E
Sbjct: 126 IEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEE 165
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 80 FKIQNIVGSCD-------VKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIF 132
I+N+V S +K LEG + Y E FPGL+YR+K P+ LIF
Sbjct: 5 INIENVVASTKLAEEFDLIKIEAELEG--------AEYNKEKFPGLVYRVKSPRAAFLIF 56
Query: 133 VSGKIVITGAKVRDETYTAFENIYPVL 159
SGK+V TGAK ++ T N+ L
Sbjct: 57 TSGKVVCTGAKNVEDVRTVITNMAQTL 83
>gi|110669284|ref|YP_659095.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385804848|ref|YP_005841248.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109627031|emb|CAJ53507.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|148508283|gb|ABQ76067.1| TATA-binding transcription initiation factor [uncultured
haloarchaeon]
gi|339730340|emb|CCC41669.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + + ++ L P + D +QNIV S D+ + L +A G +
Sbjct: 69 AKSTTDVRESLHIVFDKLRDLRIPVSDNPDITVQNIVTSADLGEDLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDNPAVVALLFGSGKLVITGGKEPDDAREAVDVILSRLDEL 182
>gi|448414415|ref|ZP_21577484.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445681981|gb|ELZ34405.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 186
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 26/162 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A ++ L P + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+ TA
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDAETA 171
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
A +IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF S
Sbjct: 3 APADSIEIQNVVASTGIGQELDLEALADDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRS 61
Query: 135 GKIVITGAKVRDETYTAFENIY 156
GKIV TGAK D+ + A I+
Sbjct: 62 GKIVCTGAKSIDDVHEALGIIF 83
>gi|321451458|gb|EFX63104.1| hypothetical protein DAPPUDRAFT_335934 [Daphnia pulex]
Length = 59
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 107 FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
F+SYE E+FPGLIY+MKQPK+VLLIF SGKIV+TGAKVR + Y F NIYP+L F+K
Sbjct: 1 FNSYEAEIFPGLIYKMKQPKLVLLIFCSGKIVLTGAKVRQDIYDGFTNIYPILRNFKK 58
>gi|340344813|ref|ZP_08667945.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519954|gb|EGP93677.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++ N+V++ +D KLDL I + + EY+P+ VCTG
Sbjct: 9 AIVNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKS++ ++ A K I++K K IQNIV S ++ + LE A + S
Sbjct: 69 AKSQELAEDAVSKVVEILRKGKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTL-PRSM 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+LIF SGK+V GAK+ + + + I+ +L E
Sbjct: 128 YEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDIHRSVHQIHSMLEE 179
>gi|379335155|gb|AFD03144.1| 2-alkenal reductase [uncultured bacterium W5-77b]
Length = 186
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
S++N+V++ +D KLDLK I ++ + E++P VCTG
Sbjct: 9 SIENVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
+KSE+ ++ A + + ++K K + IQNIV S ++ + LE A + S
Sbjct: 69 SKSEEIARKAVKTVVQELRKGKIKIKKEATVTIQNIVASINLGGRVHLEQAARTL-PRSM 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+R+ PK V+LIF SGK+V TG K + + + ++ +L E
Sbjct: 128 YEPEQFPGLIHRVLDPKTVILIFSSGKLVCTGGKTEKDVFRSVNQLHNLLEE 179
>gi|328794393|ref|XP_001123347.2| PREDICTED: TATA-box-binding protein-like, partial [Apis mellifera]
Length = 169
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 60/99 (60%), Gaps = 24/99 (24%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+VSTVNL +L L I + RN+EYNP VCTGA
Sbjct: 68 LQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGA 127
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCD 90
+SE+ S LA RK+ARIIQKLGF AKF +FKIQNIV +CD
Sbjct: 128 RSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCD 166
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
+QN+V + ++ + L + + S Y P F GLI R++ P+ LIF SGKIV TG
Sbjct: 68 LQNVVSTVNLGIELPLMYIN-TRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTG 126
Query: 142 AKVRDETYTA 151
A+ +++Y A
Sbjct: 127 ARSEEDSYLA 136
>gi|452207285|ref|YP_007487407.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083385|emb|CCQ36676.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ ++ +L L+++A+ +EYNP VCTG
Sbjct: 9 DIENVVASTDIGQELALERLAMDLSGSEYNPDTFPGLIYRIQEPEAANLIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
A + + + ++ LG + +QNIV S D++ + L +A G
Sbjct: 69 ANTVDDVHSSLQTVCETLRDLGIDVIEAPTITVQNIVFSADLRAQLNLNAIAIGFGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D A E I L+E
Sbjct: 129 EYEPEQFPGLVYRLDTPDVVTLLFSSGKVVITGTKTPDAAEEALEKISGKLSEL 182
>gi|341582887|ref|YP_004763379.1| transcription factor [Thermococcus sp. 4557]
gi|340810545|gb|AEK73702.1| transcription factor [Thermococcus sp. 4557]
Length = 190
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +L+L+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K ++++K+G AKF IQN+V S D+ L+ +A S
Sbjct: 71 KSVEDIERAVNKLIQMLKKIG--AKFARAPQIDIQNMVFSGDIGMEFNLDAVALSLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 180
>gi|413933533|gb|AFW68084.1| TATA-binding protein2 isoform 1 [Zea mays]
gi|413933534|gb|AFW68085.1| TATA-binding protein2 isoform 2 [Zea mays]
Length = 46
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 46/46 (100%)
Query: 122 MKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
MKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVL+EFRK+QQ
Sbjct: 1 MKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQQ 46
>gi|212224460|ref|YP_002307696.1| transcription factor [Thermococcus onnurineus NA1]
gi|226703563|sp|B6YXI6.1|TBP_THEON RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|212009417|gb|ACJ16799.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Thermococcus onnurineus NA1]
Length = 192
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +L+L+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K ++++++G AKF+ IQN+V S D+ L+ +A S
Sbjct: 71 KSVEDIERAVNKLIQMLKRIG--AKFQRAPQIDIQNMVFSGDIGMEFNLDAVALSLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 180
>gi|150400012|ref|YP_001323779.1| transcription factor [Methanococcus vannielii SB]
gi|166227822|sp|A6URP5.1|TBP_METVS RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150012715|gb|ABR55167.1| TATA-box binding [Methanococcus vannielii SB]
Length = 181
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 31/174 (17%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ A NAEY +PKV CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
++ +++A +K + +++ G + D +QN+V + ++ L+ + S + Y
Sbjct: 69 KEDAEIAIKKIIKELKEAGM--EIIDNPVVSVQNMVATTELGMEPNLDDI--STLECTEY 124
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPE FPGL+YR+ PK+V+LIF SGK+VITG KV ++ Y AF+ I L E +
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISATLKELEQ 178
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ KI N+V S + I LE Y+ + YEPE FPGL+ R+ PK+ LLIF SGK
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE---YAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGAK +++ A + I L E
Sbjct: 61 LNCTGAKSKEDAEIAIKKIIKELKE 85
>gi|223476888|ref|YP_002581345.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214032114|gb|EEB72945.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 182
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 30/175 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
V+N+V++++L K+D++++A + Y+P V CTGA
Sbjct: 5 VENVVASIDLHGKIDVERVASELDPVHYDPSVFPGAIYKMGSFGVTFLIFYSGKLVCTGA 64
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKF-PIRLEGLAYSHGAFSS 109
KS + K A + + ++ +G + K + ++QNIV + D F + L+ +A +
Sbjct: 65 KSVETIKRATEELKQTLESMGMKFRGKPEIRVQNIVAAGDAGFRTLDLDTVALTLPNVE- 123
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE+FPG++YR+K +I +LIF SGKIV++GAK ++ A + +++EF+K
Sbjct: 124 YEPEIFPGVVYRVKNSRITILIFNSGKIVVSGAKTEEDIQRA---VNELISEFKK 175
>gi|227827548|ref|YP_002829328.1| transcription factor [Sulfolobus islandicus M.14.25]
gi|227830235|ref|YP_002832015.1| transcription factor [Sulfolobus islandicus L.S.2.15]
gi|229579050|ref|YP_002837448.1| transcription factor [Sulfolobus islandicus Y.G.57.14]
gi|229582199|ref|YP_002840598.1| transcription factor [Sulfolobus islandicus Y.N.15.51]
gi|229584751|ref|YP_002843253.1| transcription factor [Sulfolobus islandicus M.16.27]
gi|238619705|ref|YP_002914531.1| transcription factor [Sulfolobus islandicus M.16.4]
gi|284997658|ref|YP_003419425.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|385773217|ref|YP_005645783.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
gi|385775851|ref|YP_005648419.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|227456683|gb|ACP35370.1| TATA-box binding family protein [Sulfolobus islandicus L.S.2.15]
gi|227459344|gb|ACP38030.1| TATA-box binding family protein [Sulfolobus islandicus M.14.25]
gi|228009764|gb|ACP45526.1| TATA-box binding family protein [Sulfolobus islandicus Y.G.57.14]
gi|228012915|gb|ACP48676.1| TATA-box binding family protein [Sulfolobus islandicus Y.N.15.51]
gi|228019801|gb|ACP55208.1| TATA-box binding family protein [Sulfolobus islandicus M.16.27]
gi|238380775|gb|ACR41863.1| TATA-box binding family protein [Sulfolobus islandicus M.16.4]
gi|284445553|gb|ADB87055.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|323474599|gb|ADX85205.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|323477331|gb|ADX82569.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
Length = 181
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 20 VSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQ 55
++TV L+ LDL + N EY+P V TGAKS +
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 56 QSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEL 114
+ A ++ + ++K G K +IQNIV S ++ + L+ A+ + YEPE
Sbjct: 61 ELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEPEQ 119
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
FPGLI+RM P++VLLIF SGK+VITGAK DE A + I+ L E
Sbjct: 120 FPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAEL 167
>gi|240102886|ref|YP_002959195.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
gi|239910440|gb|ACS33331.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 182
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 31/168 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
V+N+V++++L ++D++K+A + + +YNP V CTGA
Sbjct: 8 VENVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKF-PIRLEGLAYSHGAF 107
KS + + A K R ++ +G KFK + ++QNIV + D+ F + L+ +A +
Sbjct: 68 KSVETIRKATEKLKRTLESMGM--KFKGEPEIQVQNIVAAGDLGFGTLDLDIVALTLPNV 125
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE+FPG++YR++ ++ +LIF SGK+V++GA+ ++ A E +
Sbjct: 126 E-YEPEIFPGVVYRVRNSRMTILIFNSGKVVVSGARTEEDIRRAVEEL 172
>gi|294496460|ref|YP_003542953.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
gi|292667459|gb|ADE37308.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
Length = 183
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL KI + AEYN PK VCTGA
Sbjct: 8 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ A+ + +G K D +QNIV S D+K + L +A G +
Sbjct: 68 KNVDDVHTVIADMAKKLNGIGIDTLEKPDITVQNIVASADLKAVLNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +PK+V+LIF SGK+V+TG K
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGK 161
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ KI+N+V S + L + A GA Y + FPGL+YR+ PK L+F SGK+
Sbjct: 5 NIKIENVVASTKLAEEFDLTKIEAEFEGA--EYNKQKFPGLVYRVSNPKAAFLVFTSGKV 62
Query: 138 VITGAKVRDETYTAFENI 155
V TGAK D+ +T ++
Sbjct: 63 VCTGAKNVDDVHTVIADM 80
>gi|448498781|ref|ZP_21610993.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445698147|gb|ELZ50197.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 26/167 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+ A + I
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDDAEEAVKEI 175
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A I+
Sbjct: 67 TGAKSIDDVHEALGIIF 83
>gi|17509361|ref|NP_492356.1| Protein TLF-1, isoform a [Caenorhabditis elegans]
gi|7329167|gb|AAF59926.1| TBP-like factor [Caenorhabditis elegans]
gi|14530454|emb|CAB03082.2| Protein TLF-1, isoform a [Caenorhabditis elegans]
Length = 505
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
++N+V L +DL+K+A+ N Y + G +
Sbjct: 267 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 326
Query: 53 SEQQSKLAARKYARIIQKLGFPAK----FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE K AAR AR +Q++ K +++++ N++ +C + F I++E +A + + S
Sbjct: 327 SEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSES 386
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
+YEPEL GL++R PK L I +G I +TGA+ + IYP++ EFR +++
Sbjct: 387 TYEPELSVGLVWRSVTPKATLRIHTTGSITVTGAQSEADVLEVLSKIYPIVLEFRCLER 445
>gi|390961570|ref|YP_006425404.1| TATA-box binding protein [Thermococcus sp. CL1]
gi|390519878|gb|AFL95610.1| TATA-box binding protein [Thermococcus sp. CL1]
Length = 187
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +L+L+K+ N++YNP+ V TGA
Sbjct: 8 IENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKF---KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K ++++K+G AKF IQN+V S D+ L+ +A S
Sbjct: 68 KSVEDIERAVNKLIQMLKKIG--AKFGRAPQIDIQNMVFSGDIGMEFNLDAVALSLPN-C 124
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 125 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 177
>gi|150403180|ref|YP_001330474.1| transcription factor [Methanococcus maripaludis C7]
gi|166227820|sp|A6VIP7.1|TBP_METM7 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150034210|gb|ABR66323.1| TATA-box binding [Methanococcus maripaludis C7]
Length = 181
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ A NAEY +PKV CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 54 EQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
+ + +A K + +Q+ G + +QN+V + ++ L+ + S + YEP
Sbjct: 69 KDDAVIAINKIIKELQEAGMDIIDNPEVNVQNMVATTELGMEPNLDDI--STLECTEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E FPGL+YR+ PK+V+LIF SGK+VITG K D+ Y AF I L E +
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKRIDDAYVAFNKILTTLKELEE 178
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ KI N+V S + I LE Y+ + YEPE FPGL+ R+ PK+ LLIF SGK
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE---YAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGAK +D+ A I L E
Sbjct: 61 LNCTGAKSKDDAVIAINKIIKELQE 85
>gi|448577353|ref|ZP_21642983.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445727998|gb|ELZ79607.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ ++ AE+NP VCTGA
Sbjct: 12 IQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
S + A + + LG P ++ +QNIV S D+ + L LA G
Sbjct: 72 SSVDEVNQALEQVFEELGSLGIPIDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK
Sbjct: 132 YEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAK 165
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 75 AKFKDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFV 133
A+ +IQN+V S V + LE L+ GA + P+ FPGL+YR + P+ LIF
Sbjct: 5 ARLDSLEIQNVVASSAVGLELDLESLSDDVPGA--EFNPDNFPGLVYRTQDPRAANLIFR 62
Query: 134 SGKIVITGAKVRDETYTAFENIYPVL 159
SGKIV TGA DE A E ++ L
Sbjct: 63 SGKIVCTGASSVDEVNQALEQVFEEL 88
>gi|399578906|ref|ZP_10772650.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
gi|399235932|gb|EJN56872.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
Length = 189
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +++L+++A+ + A+YNP+ VCTGA
Sbjct: 10 IENVVASTGIGTEIELEQLAMDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + A ++ ++ LG + +QNIV S D+ + L +A G +
Sbjct: 70 KSIEYVHAACQRVFDDLRTLGIDVDDDPEVIVQNIVASADLGDSLNLNAIAIGLGLENIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+V L+F SGK+VITG K + A I LTE
Sbjct: 130 YEPEQFPGLVYRIDDPKVVALLFGSGKLVITGGKTPSDAKRAVTVIVERLTEL 182
>gi|448466589|ref|ZP_21599175.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445813850|gb|EMA63824.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 186
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A ++ L P + D +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPDITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A I+
Sbjct: 67 TGAKSIDDVHEALGIIF 83
>gi|4688650|emb|CAB41469.1| TBP-like factor [Caenorhabditis elegans]
Length = 454
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
++N+V L +DL+K+A+ N Y + G +
Sbjct: 267 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 326
Query: 53 SEQQSKLAARKYARIIQKLGFPAK----FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE K AAR AR +Q++ K +++++ N++ +C + F I++E +A + + S
Sbjct: 327 SEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSES 386
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+YEPEL GL++R PK L I +G I +TGA+ + IYP++ EFR
Sbjct: 387 TYEPELSVGLVWRSVTPKATLRIHTTGSITVTGAQSEADVLEVLSKIYPIVLEFR 441
>gi|193202769|ref|NP_001122474.1| Protein TLF-1, isoform b [Caenorhabditis elegans]
gi|172052151|emb|CAQ35044.1| Protein TLF-1, isoform b [Caenorhabditis elegans]
Length = 508
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK-----------------------VCTGAK 52
++N+V L +DL+K+A+ N Y + G +
Sbjct: 270 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 329
Query: 53 SEQQSKLAARKYARIIQKLGFPAK----FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE K AAR AR +Q++ K +++++ N++ +C + F I++E +A + + S
Sbjct: 330 SEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPSES 389
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
+YEPEL GL++R PK L I +G I +TGA+ + IYP++ EFR +++
Sbjct: 390 TYEPELSVGLVWRSVTPKATLRIHTTGSITVTGAQSEADVLEVLSKIYPIVLEFRCLER 448
>gi|324518157|gb|ADY47019.1| TATA box-binding protein-like protein 1 [Ascaris suum]
Length = 272
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNA------------EYNPKVC------------TGA 51
++N+V T L +DL ++A+ N + NP +C G
Sbjct: 30 IRNVVCTYALPLHIDLHRVAVNCGNVTLDQGRSVLLKQKRNP-LCYVKIYNSGKVYIVGC 88
Query: 52 KSEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
+SE++ K AAR AR++QK G + ++++I NI+ +C++ F I++E +A +
Sbjct: 89 RSEEECKRAARGVARMVQKGMGKEGQIIRMRNYRICNILATCNMPFGIKIEEMARKYPKN 148
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GL++R PK L I +G I +TGA+ + A + IYP++ +++
Sbjct: 149 CDYEPELSVGLVWRSSDPKATLRIHTTGSITVTGARSEADVVNAIKGIYPLVLQYQ 204
>gi|448593777|ref|ZP_21652677.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445728641|gb|ELZ80242.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ ++ AE+NP VCTGA
Sbjct: 12 IQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
S + A + + LG P ++ +QNIV S D+ + L LA G
Sbjct: 72 SSVDEVNRALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ P +V+L+F SGKIVITGAK
Sbjct: 132 YEPEQFPGLVYRIDDPNVVVLLFGSGKIVITGAK 165
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 71 LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLL 130
+ A+ +IQN+V S V + LE L+ A + + P+ FPGL+YR + P+ L
Sbjct: 1 MSHEARLDSLEIQNVVASSAVGQELDLESLS-DDVAGAEFNPDNFPGLVYRTQDPRAANL 59
Query: 131 IFVSGKIVITGAKVRDETYTAFENIYPVL 159
IF SGKIV TGA DE A E ++ L
Sbjct: 60 IFRSGKIVCTGASSVDEVNRALEQVFEEL 88
>gi|15897830|ref|NP_342435.1| transcription factor [Sulfolobus solfataricus P2]
gi|284175636|ref|ZP_06389605.1| transcription factor [Sulfolobus solfataricus 98/2]
gi|384434381|ref|YP_005643739.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
gi|13814131|gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus P2]
gi|261602535|gb|ACX92138.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
Length = 181
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 20 VSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQ 55
++TV L+ LDL + N EY+P V TGAKS +
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 56 QSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEL 114
+ A ++ + ++K G K +IQNIV S ++ + L+ A+ + YEPE
Sbjct: 61 ELIKAVKRIIKTLKKYGIKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEPEQ 119
Query: 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
FPGLI+RM P++VLLIF SGK+VITGAK DE A + I+ L E
Sbjct: 120 FPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAEL 167
>gi|448316921|ref|ZP_21506499.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445606151|gb|ELY60056.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 25/162 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+ +N+V++ + + DL+ +A NA+Y+P VCTG
Sbjct: 9 TTENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
AKS + +A +++LG + F IQNIV S D+ + L +A G
Sbjct: 69 AKSVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIGLGLGQIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
YEPE FPGL+YR+ +P +V+L+F SGK VITG + TA
Sbjct: 129 YEPEQFPGLVYRLDKPDVVVLLFGSGKAVITGGTEIQDAATA 170
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 83 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
+N+V S D L+ LA + Y+P FPG++YRM P+ LIF +GKIV TGA
Sbjct: 11 ENVVASGDTGREFDLQALADDLNN-AQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCTGA 69
Query: 143 KVRDETYTAFENIYPVLTEF 162
K ++ + E I+ L +
Sbjct: 70 KSVEDINKSAETIFNALKQL 89
>gi|147920361|ref|YP_685866.1| transcription factor [Methanocella arvoryzae MRE50]
gi|110621262|emb|CAJ36540.1| TATA-box binding protein E [Methanocella arvoryzae MRE50]
Length = 188
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 26/167 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + ++DLK + L A+Y+P+ VCTG
Sbjct: 12 TIENVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTG 71
Query: 51 AKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +K + + +G A + +QNIV S D+ + L +A G +
Sbjct: 72 AKSIEDVDRGLKKVFKKMDSVGIKVADNPEITVQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ QPK+V+L+F SGK+V+TG K + A + I
Sbjct: 132 EYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRI 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
K I+N+V S + I L+ + + + Y+PE FPGL+YR K PK LIF SGKI
Sbjct: 9 KTITIENVVASTAIGQEIDLKSVTLALDG-ADYDPEQFPGLVYRTKDPKTAALIFRSGKI 67
Query: 138 VITGAKVRDETYTAFENIY 156
V TGAK ++ + ++
Sbjct: 68 VCTGAKSIEDVDRGLKKVF 86
>gi|452207289|ref|YP_007487411.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083389|emb|CCQ36681.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ ++D +L L +A+ ++Y+P VCTG
Sbjct: 9 DIENVVASTDIDQELALDSLAMDLSGSDYDPDNFPGLIYRTQEPQAANLIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
A + + + ++ LG + +QNIV S D++ + L +A G
Sbjct: 69 ANTVDDVHSSLQIVCETLRDLGIDVIEAPTITVQNIVSSADLRAQLNLNAIAIGFGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
YEPE FPGL+YR+ P +V L+F SGK+VITGAK D A + + L+E V
Sbjct: 129 EYEPEQFPGLVYRLDTPDVVTLLFGSGKVVITGAKTPDAAEEALKKVSGELSELGLVD 186
>gi|45357820|ref|NP_987377.1| transcription factor [Methanococcus maripaludis S2]
gi|340623439|ref|YP_004741892.1| transcription factor [Methanococcus maripaludis X1]
gi|56749680|sp|Q6M0L3.1|TBP_METMP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|45047380|emb|CAF29813.1| TATA-binding protein (TBP) [Methanococcus maripaludis S2]
gi|339903707|gb|AEK19149.1| transcription factor [Methanococcus maripaludis X1]
Length = 181
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 27/174 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
V N+V + + +DL+ A NAEY P+ CTGA
Sbjct: 7 VVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGA 66
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
+ ++ + +A K + +++ G + K+QN+V + ++ L+ + S + Y
Sbjct: 67 RCKEDAVIAINKIVKELKEAGMDLIDNPEVKVQNMVATTELGMEPNLDDI--STLECTEY 124
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPE FPGL+YR+ +PK+V+LIF SGK+VITG KV ++ Y AF+ I L E +
Sbjct: 125 EPEQFPGLVYRLSEPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISKTLKELEE 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ K+ N+V S + I LE Y+ + YEPE FPGL+ R+ +PK+ LLIF SGK
Sbjct: 4 EIKVVNVVVSTQIGTDIDLE---YAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGA+ +++ A I L E
Sbjct: 61 LNCTGARCKEDAVIAINKIVKELKE 85
>gi|333986797|ref|YP_004519404.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
gi|333824941|gb|AEG17603.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
Length = 184
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
V+NIV++ L L+L K+A EYN PK VCTGA
Sbjct: 11 VENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIFGSGKLVCTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + S A ++ L P +F + KIQNIV S ++ + LE +A +
Sbjct: 71 KSIENSIKAIHIAVDKMRSLDPDIPHEF-EIKIQNIVASANLMSTLNLEAVAMDL-ENTE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGAK +++ E L E
Sbjct: 129 YEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKSKEDAQLGVEKTKERLIEL 181
>gi|325959799|ref|YP_004291265.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
gi|325331231|gb|ADZ10293.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
Length = 181
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
V+NIV++ L LDL ++A EYN PK VCTGA
Sbjct: 8 VENIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + SK A ++ L P +F + KIQNIV S ++ + LE +A +
Sbjct: 68 KSIEDSKKAIHIAVDKMRALDTEIPHEF-EIKIQNIVASANLGKTLNLESVALDL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK ++ E L E
Sbjct: 126 YEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSFEDAQLGVEKTKERLAEL 178
>gi|315231074|ref|YP_004071510.1| TATA-box binding protein [Thermococcus barophilus MP]
gi|315184102|gb|ADT84287.1| TATA-box binding protein [Thermococcus barophilus MP]
Length = 190
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFTQLDLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K +++ K+G KF+ IQN+V S D+ L+ +A
Sbjct: 71 KSVEDIERAVSKLVQMLSKIG--TKFQRAPQIDIQNMVFSGDIGMEFNLDAVALVLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 180
>gi|448441657|ref|ZP_21589264.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445688693|gb|ELZ40944.1| transcription factor [Halorubrum saccharovorum DSM 1137]
Length = 185
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + ++KL P + + +QNIV S D+ + L +A G
Sbjct: 69 ANSIDAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ P +V L+F SGK+VITG D+ A + I
Sbjct: 129 YEPEQFPGLVYRIDDPDVVALLFGSGKLVITGGTTPDDAAAAVDVI 174
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 8 ITIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA D + + + ++ E RK+Q
Sbjct: 66 CTGANSIDAVHESLDLVF---DELRKLQ 90
>gi|448457842|ref|ZP_21595847.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445810143|gb|EMA60174.1| transcription factor [Halorubrum lipolyticum DSM 21995]
Length = 185
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++KL P + + +QNIV S D+ + L +A G
Sbjct: 69 ANSIEAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V L+F SGK+V+TG D+ A + I
Sbjct: 129 YEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVI 174
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 8 ITIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E RK+Q
Sbjct: 66 CTGANSIEAVHESLDLVF---DELRKLQ 90
>gi|55377538|ref|YP_135388.1| transcription factor [Haloarcula marismortui ATCC 43049]
gi|344211616|ref|YP_004795936.1| transcription factor/TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|448630604|ref|ZP_21673184.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|448639975|ref|ZP_21677123.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|448659470|ref|ZP_21683325.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|448666852|ref|ZP_21685497.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|448678006|ref|ZP_21689196.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|448688547|ref|ZP_21694349.1| transcription factor [Haloarcula japonica DSM 6131]
gi|74571974|sp|Q5V470.1|TBP_HALMA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|55230263|gb|AAV45682.1| TATA-box binding protein E [Haloarcula marismortui ATCC 43049]
gi|343782971|gb|AEM56948.1| transcription factor / TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|445755637|gb|EMA07020.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|445760411|gb|EMA11674.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|445762502|gb|EMA13723.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|445771983|gb|EMA23039.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|445773681|gb|EMA24714.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|445779213|gb|EMA30150.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 186
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 DIENVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVSSADLGSSLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+V+TG K +++ A + I L++
Sbjct: 129 EYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGKRKEDAEEAVDTIVERLSDL 182
>gi|70607094|ref|YP_255964.1| transcription factor [Sulfolobus acidocaldarius DSM 639]
gi|68567742|gb|AAY80671.1| TATA-binding protein [Sulfolobus acidocaldarius DSM 639]
Length = 166
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS + A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 38 VVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLE 97
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM +P++VLLIF SGK+VITGAK DE + A + I+ L E
Sbjct: 98 N-NMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVEL 153
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PKI LIF SGK+V+TGAK DE A + I L ++
Sbjct: 9 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKY 62
>gi|375083218|ref|ZP_09730248.1| transcription factor [Thermococcus litoralis DSM 5473]
gi|374742172|gb|EHR78580.1| transcription factor [Thermococcus litoralis DSM 5473]
Length = 188
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L LDL+K+ +++YNP+ V TGA
Sbjct: 11 IENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K ++ K+G KF + IQN+V S D+K L+ +A
Sbjct: 71 KSVEDIQAAVSKLVEMLSKIG--TKFTRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K PK V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 128 EYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAK---SEHDAWEAVKKLLHELEK 180
>gi|268566091|ref|XP_002639632.1| C. briggsae CBR-TLF-1 protein [Caenorhabditis briggsae]
Length = 512
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 27/175 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NP----KVCT-------GAK 52
++N+V L +DL+K+A+ N Y NP KV + G +
Sbjct: 274 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRNPGCYIKVYSSGKVYIVGCR 333
Query: 53 SEQQSKLAARKYARIIQKLGFPAK----FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE + AAR AR +Q++ K +++++ N++ +C + F I++E +A + A S
Sbjct: 334 SEDDCRRAARSIARHVQRVMGKTKEKVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPAES 393
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
+YEPEL GL++R PK L I +G I +TGA + IYP++ +FR
Sbjct: 394 TYEPELSVGLVWRSTTPKATLRIHTTGSITVTGASSEADVLEVLSKIYPIVLDFR 448
>gi|2833470|sp|Q56253.1|TBP_THECE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|498255|gb|AAA73412.1| TATA-binding protein [Thermococcus celer]
Length = 189
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 33/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +L+L+++ +++YNP+ V TGA
Sbjct: 8 IENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS + + A K ++++K+G AKF IQN+V S D+ L+ +A S
Sbjct: 68 KSVEDIERAVNKLIQMLKKIG--AKFSRAPQIDIQNMVFSGDIGMEFNLDAVALSLPN-C 124
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 125 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 177
>gi|170291079|ref|YP_001737895.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175159|gb|ACB08212.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 211
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+VS+ ++ +LDL +I+ + + + Y+P+ VCTG
Sbjct: 34 AIQNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKIDEPKAALLLFSSGKFVCTG 93
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS ++S A ++QK G K + K +NIV S + + +E LA +
Sbjct: 94 TKSVEESAKAINAAIEVLQKHGIEVKGRPLIKAENIVASAKLHVKVDIERLALELEN-TL 152
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
YEPE FPGLI+RMK P +V LIF SG +V TGAK + A + +L
Sbjct: 153 YEPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAKKESDVRRAVYKLRDILA 203
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 24/81 (29%)
Query: 17 KNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAK 52
+NIV++ L K+D++++AL+ N Y P+ VCTGAK
Sbjct: 127 ENIVASAKLHVKVDIERLALELENTLYEPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAK 186
Query: 53 SEQQSKLAARKYARIIQKLGF 73
E + A K I+ + G+
Sbjct: 187 KESDVRRAVYKLRDILARKGY 207
>gi|410722027|ref|ZP_11361343.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
gi|410597924|gb|EKQ52528.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
Length = 181
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
V+NIV++ + LDL ++A EYN PK VCTGA
Sbjct: 8 VENIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLVYKIKEPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + SK A ++ L P ++ + K+QNIV S +++ + LE +A +
Sbjct: 68 KSIENSKKAIHIAVDKMRTLDPEIPHEY-EMKVQNIVASANLEKTLNLEAVALDL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGAK + E L+E
Sbjct: 126 YEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKTIADAQLGVEKTKERLSEL 178
>gi|408381757|ref|ZP_11179305.1| transcription factor [Methanobacterium formicicum DSM 3637]
gi|407815688|gb|EKF86258.1| transcription factor [Methanobacterium formicicum DSM 3637]
Length = 181
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
V+NIV++ L +DL ++A EYN PK VCTGA
Sbjct: 8 VENIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS + SK A ++ L P +F + K+QNIV S ++ + LE +A +
Sbjct: 68 KSIENSKKAIHIAVDKMRTLDPDIPHEF-EIKVQNIVASANLDKTLNLEAVALDL-ENTE 125
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+VLL+F SGK+V TGAK + E L+E
Sbjct: 126 YEPEQFPGLVYRLGDPKVVLLLFGSGKVVCTGAKTISDAQLGVEKTKERLSEL 178
>gi|448334828|ref|ZP_21523988.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445618632|gb|ELY72192.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 150
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
VCTGA+S A + ++ LG + + IQNIV S D+ I L +A G
Sbjct: 21 VCTGAQSTADVTDALNILFQDLRDLGIDVVDQPEITIQNIVSSGDLGEQIDLNAIAIGLG 80
Query: 106 -AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGL+YR+ P +V+L+F SGK+VITGAK RD +A E ++ L E
Sbjct: 81 LEHTEYEPEQFPGLVYRLTSPPVVVLLFGSGKLVITGAKTRDNAQSALETVHSRLREL 138
>gi|448475876|ref|ZP_21603231.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|445816094|gb|EMA66003.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 185
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 25/171 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + ++ L P + +QNIV S D+ + L +A G
Sbjct: 69 ASSIDAVHESLAIVFDELRALQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160
YEPE FPGL+YR+ +P +V L+F SGK+V+TG D+ A + I LT
Sbjct: 129 YEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGTTPDDAAAAVDVIVEELT 179
>gi|345004914|ref|YP_004807767.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344320540|gb|AEN05394.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ +A A++NP VCTGA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A + ++ L P + + + +QNIV S D+ + L LA G
Sbjct: 70 KSIDDVHDALAIIFQKLRDLTIPVEEEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YRM P +V+L+F SGKIVITG K + A E I
Sbjct: 130 YEPEQFPGLVYRMDDPDVVILLFGSGKIVITGGKQVQDAQEAVEKI 175
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR + PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGAK D+ + A I+ L +
Sbjct: 67 TGAKSIDDVHDALAIIFQKLRDL 89
>gi|14590849|ref|NP_142921.1| transcription factor [Pyrococcus horikoshii OT3]
gi|6647870|sp|O58737.1|TBP_PYRHO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|3257423|dbj|BAA30106.1| 191aa long hypothetical TATA-binding protein (transcription
initiation factor TFIID) [Pyrococcus horikoshii OT3]
Length = 191
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 35/177 (19%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
KS Q + R A++IQKL G KFK +QN+V S D+ L+ +A +
Sbjct: 71 KSIQDIE---RAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLDNVALTLPN- 126
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K+P+ V+L+F SGKIV +GAK A+E + +L E K
Sbjct: 127 CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEADAWEAVRKLLRELEK 180
>gi|242398131|ref|YP_002993555.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
gi|259517220|sp|C6A0R1.1|TBP_THESM RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|242264524|gb|ACS89206.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
Length = 185
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L LDL+K+ +++YNP+ V TGA
Sbjct: 8 IENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS + A K ++ K+G + + IQN+V S D+K L+ +A Y
Sbjct: 68 KSVDDIQAAVSKLVEMLSKIGTKFGRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-CEY 126
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
EPE FPG+IYR+K PK V+L+F SGKIV +GAK + + A + + L ++ +++
Sbjct: 127 EPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSEHDAWEAVKKLLHELDKYGLIEE 183
>gi|340344679|ref|ZP_08667811.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519820|gb|EGP93543.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 28/162 (17%)
Query: 26 DCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAA 61
D K+DL I + + EYNP VCTG KSE+ + A
Sbjct: 20 DQKIDLNDITKKFPDTEYNPDQFPGLVFRLQNPKTATLIFRTGKMVCTGGKSEEMAIKAV 79
Query: 62 RKYARIIQKLGFPAKFKDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLI 119
+ ++K G K KD +I QNIV S ++ + LE A + S YEPE FPGLI
Sbjct: 80 NTVVQKLRKGGIKVK-KDAEITVQNIVASINLGGKVHLEKAARTL-PRSMYEPEQFPGLI 137
Query: 120 YRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
+RM PK V+LIF SGK+V TGAK + + + N++ +L E
Sbjct: 138 HRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHALLEE 179
>gi|383318805|ref|YP_005379646.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
gi|379320175|gb|AFC99127.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
Length = 188
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 26/167 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + ++DLK + L A+Y+P+ VCTG
Sbjct: 12 TIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTG 71
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +K + I +G + +QNIV S D+ + L +A G +
Sbjct: 72 AKSIEDVDRGLKKVFKKIASVGIKVDPNPEITVQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ PK+V+L+F SGK+V+TG K + A E I
Sbjct: 132 EYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVTGGKKPKDAEEAVERI 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGK 136
K I+N+V S + I L+ + + GA Y+PE FPGL+YR K PK LIF SGK
Sbjct: 9 KTITIENVVASTAIGQEIDLKSVTLALEGA--DYDPEQFPGLVYRTKDPKTAALIFRSGK 66
Query: 137 IVITGAKVRDETYTAFENIY 156
IV TGAK ++ + ++
Sbjct: 67 IVCTGAKSIEDVDRGLKKVF 86
>gi|313124795|ref|YP_004035059.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286783|ref|ZP_21478002.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312291160|gb|ADQ65620.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445573322|gb|ELY27844.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 187
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++ L P + D +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLNLVFDKLRALQIPVDDEPDITVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K + A + I L++
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKHPSDAEGAVDEIVSRLSDL 182
>gi|402593882|gb|EJW87809.1| hypothetical protein WUBG_01280 [Wuchereria bancrofti]
Length = 396
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGAK 52
++N+V L +DL ++AL + N + NP G +
Sbjct: 153 IRNVVCNYTLPLHIDLHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGKIYIVGCR 212
Query: 53 SEQQSKLAARKYARIIQK----LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
SE + K AAR AR++QK + + +++++ N++ +C + F +++E LA + S
Sbjct: 213 SESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELAQKYPDCS 272
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163
YEPEL GLI+R P+ L I +G I +T A D A E IYP++ EFR
Sbjct: 273 QYEPELSVGLIWRSTNPRATLRIHTTGSITVTAASESD-VMKAVEVIYPIVKEFR 326
>gi|386874579|ref|ZP_10116817.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807612|gb|EIJ66993.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 26/174 (14%)
Query: 13 VSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VC 48
V ++ N+V++ ++ +LDL I + EY+P+ VC
Sbjct: 7 VIAIVNVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVC 66
Query: 49 TGAKSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAF 107
TGAKS++ ++ A +K +++K K + IQNIV S ++ + LE A +
Sbjct: 67 TGAKSQELAETAVKKVVELLRKGKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTL-PR 125
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
S YEPE FPGLI+RM PK V+LIF SGK+V GAK+ + + + I+ +L E
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLEE 179
>gi|448582755|ref|ZP_21646259.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445732403|gb|ELZ83986.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 189
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+VITG K ++ A + I L+E
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAEAAVDVIISRLSEL 182
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR ++PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQEPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + E ++ L E +
Sbjct: 66 CTGAKSTDDVHESLEIVFDKLRELQ 90
>gi|146304491|ref|YP_001191807.1| transcription factor [Metallosphaera sedula DSM 5348]
gi|145702741|gb|ABP95883.1| TATA binding protein of transcription factor TFIID [Metallosphaera
sedula DSM 5348]
Length = 176
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS ++ A ++ + +++ G K +IQNIV S ++ + L+ A+
Sbjct: 47 VVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANMHVHVNLDKAAFLLE 106
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM +P++VLLIF SGK+VITGAK DE Y A + I+ L E
Sbjct: 107 N-NMYEPEQFPGLIFRMDEPRVVLLIFSSGKMVITGAKREDEVYKAVKKIFDKLEEL 162
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PK+ LIF SGK+V+TGAK +E A + I L +
Sbjct: 18 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRY 71
>gi|448493598|ref|ZP_21609110.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445690153|gb|ELZ42373.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHDALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDD 167
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A I+
Sbjct: 67 TGAKSIDDVHDALGIIF 83
>gi|354609688|ref|ZP_09027644.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353194508|gb|EHB60010.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 186
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + + + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLSIKVEDEPEIVVQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P++V L+F SGK+VITG K ++ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEEL 182
>gi|134046443|ref|YP_001097928.1| transcription factor [Methanococcus maripaludis C5]
gi|132664068|gb|ABO35714.1| TATA binding protein of transcription factor TFIID [Methanococcus
maripaludis C5]
Length = 181
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 27/172 (15%)
Query: 18 NIVSTVNLDCKLDLKKIALQARNAEY-------------NPKV-----------CTGAKS 53
N+V + + +DL+ A NAEY +PKV CTGAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKC 68
Query: 54 EQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 112
++ + +A K + +++ G + +QN+V + ++ L+ + S + YEP
Sbjct: 69 KEDAVIAINKITKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDI--STLECTEYEP 126
Query: 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
E FPGL+YR+ PK+V+LIF SGK+VITG KV ++ Y A+E I L E +
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYRAYEKISKTLKELEE 178
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
+ KI N+V S + I LE A + YEPE FPGL+ R+ PK+ LLIF SGK+
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE-YAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLN 62
Query: 139 ITGAKVRDETYTAFENIYPVLTE 161
TGAK +++ A I L E
Sbjct: 63 CTGAKCKEDAVIAINKITKELKE 85
>gi|448428387|ref|ZP_21584257.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|448429752|ref|ZP_21584617.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|448439730|ref|ZP_21588142.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|448453748|ref|ZP_21594091.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448454831|ref|ZP_21594311.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|448474251|ref|ZP_21602110.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|448485769|ref|ZP_21606914.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448511919|ref|ZP_21616298.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448519932|ref|ZP_21618139.1| transcription factor [Halorubrum distributum JCM 10118]
gi|448537266|ref|ZP_21622541.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445676556|gb|ELZ29076.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445689808|gb|ELZ42032.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445690882|gb|ELZ43085.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445694753|gb|ELZ46872.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445702110|gb|ELZ54073.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445703496|gb|ELZ55426.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445807548|gb|EMA57633.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445814514|gb|EMA64476.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445817468|gb|EMA67342.1| transcription factor [Halorubrum arcis JCM 13916]
gi|445817558|gb|EMA67427.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 186
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A I+
Sbjct: 67 TGAKSIDDVHEALGIIF 83
>gi|332797079|ref|YP_004458579.1| TATA-like box binding protein, TBP [Acidianus hospitalis W1]
gi|332694814|gb|AEE94281.1| archaeal TATA-like box binding protein, TBP [Acidianus hospitalis
W1]
Length = 167
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS ++ A ++ + ++K G K +IQNIV S ++ + L+ A+
Sbjct: 38 VVTGAKSTEELIKAVKRIIKTLKKYGIKITGKPKIQIQNIVASANMHVHVNLDKAAFLLE 97
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK +E Y A + I+ L E
Sbjct: 98 N-NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREEEVYKAVKKIFDKLNEL 153
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PK+ LIF SGK+V+TGAK +E A + I L ++
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKY 62
>gi|222479944|ref|YP_002566181.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222452846|gb|ACM57111.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +LDL+ +A A++NP VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS A ++ L P + + +QNIV S D+ + L LA G
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YRM +P++V+L+F SGKIVITG K D+
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+IQN+V S + + LE LA + + P+ FPGL+YR ++PK LIF SGKIV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPG-ADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 140 TGAKVRDETYTAFENIY 156
TGAK D+ + A I+
Sbjct: 67 TGAKSIDDVHEALGIIF 83
>gi|389852335|ref|YP_006354569.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
gi|388249641|gb|AFK22494.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
Length = 191
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 35/177 (19%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
KS Q + R A+++QKL G KF+ IQN+V S D+ L+ +A +
Sbjct: 71 KSVQDIE---RAVAKLVQKLKGIGVKFRRAPQIDIQNMVFSGDIGREFNLDNVALTLPN- 126
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+++P+ V+L+F SGKIV +GAK A+E + +L E K
Sbjct: 127 CEYEPEQFPGVIYRVREPRAVILLFSSGKIVCSGAK---SEADAWEAVRKLLRELEK 180
>gi|342306417|dbj|BAK54506.1| TATA box-binding protein [Sulfolobus tokodaii str. 7]
Length = 175
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 26/163 (15%)
Query: 25 LDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLA 60
+D LDL + N EY+P V TGAKS + A
Sbjct: 1 MDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKA 60
Query: 61 ARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLI 119
++ + +++ G K +IQNIV S ++ + L+ A+ + YEPE FPGLI
Sbjct: 61 VKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLI 119
Query: 120 YRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YRM+ P++VLLIF SGK+VITGAK +E + A + I+ L E
Sbjct: 120 YRMEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIFDKLVEL 162
>gi|448620717|ref|ZP_21667964.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445756678|gb|EMA08044.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ + +LDL+ ++ AE+NP VCTGA
Sbjct: 12 IQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRSGKIVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
S A + + LG P ++ +QNIV S D+ + L LA G +
Sbjct: 72 SSIDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTTLNLNALAIGLGLENVE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +P +V+L+F SGKIVITGAK
Sbjct: 132 YEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAK 165
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 76 KFKDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVS 134
+ + +IQN+V S + + LE L+ GA + P+ FPGL+YR ++PK LIF S
Sbjct: 6 RLESLEIQNVVASSAIGQELDLESLSNDVTGA--EFNPDNFPGLVYRTQEPKAANLIFRS 63
Query: 135 GKIVITGAKVRDETYTAFENIYPVL 159
GKIV TGA D A + ++ L
Sbjct: 64 GKIVCTGASSIDGVNRALDQVFEEL 88
>gi|424813992|ref|ZP_18239170.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalina sp. J07AB43]
gi|339757608|gb|EGQ42865.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalina sp. J07AB43]
Length = 183
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ D L L +IA+ N EY P+ VCTG
Sbjct: 8 DIQNVVASATFDQSLPLDRIAIYLENTEYEPEQFPGLVYRLEEPKAAALLFGSGKIVCTG 67
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
+S +Q+K A K +++ K + +QNIV S ++ + L +A+ +
Sbjct: 68 TQSPEQAKEATHKIIDELKEADVEITNKPEITVQNIVASSELDATLNLNRIAFEL-VGTE 126
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGL+YR+ +P++V L+F SG +V TG + D+ N+ L E
Sbjct: 127 YEPEQFPGLVYRLDEPEVVFLLFSSGNLVCTGGRTYDDVENGISNLERDLKE 178
>gi|432328919|ref|YP_007247063.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
gi|432135628|gb|AGB04897.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
Length = 181
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 28/167 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
++NIV++ +L KLDL KIAL AEY P+ CTGA
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 65
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFS- 108
K ++ + + ++ G + + KI QNIV D+ + L +A S G +
Sbjct: 66 KDIEKVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLENV 124
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+++PK+VLL+F SGK+V TGAK ++E A + +
Sbjct: 125 EYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKL 171
>gi|448488858|ref|ZP_21607457.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445695479|gb|ELZ47582.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++ L P + +QNIV S D+ + L +A G
Sbjct: 70 ANSIEAVHESLDIVFAELRALQIPIEDPKITVQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ P++V L+F SGK+V+TG D+ A + I
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKVVVTGGTTPDDAAAAVDVI 175
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E R +Q
Sbjct: 67 CTGANSIEAVHESLDIVF---AELRALQ 91
>gi|126179334|ref|YP_001047299.1| transcription factor [Methanoculleus marisnigri JR1]
gi|125862128|gb|ABN57317.1| TATA binding protein of transcription factor TFIID [Methanoculleus
marisnigri JR1]
Length = 187
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ + LDL +A + ++AEYN K V TGA
Sbjct: 12 IENIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + A ++ L + ++KIQNIV S D+ PI L +A
Sbjct: 72 KSIDNLSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTPINLNKIAVGFNLDKIE 131
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+V+L+F SGK++ITG KV ++ A + I L+
Sbjct: 132 YEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKVPEDAQRAVKRILSELSSL 184
>gi|358332952|dbj|GAA51533.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 696
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 25/168 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEY------------NPKV-----------CTGA 51
S+ N+V ++ C L LK+IA + + EY +P CTGA
Sbjct: 65 SITNVVVMASMRCHLRLKEIARSSVDVEYKALQNHVIMRLRSPYTVATIWSSGKIWCTGA 124
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 111
S ++K AR+ AR I K GFP +F +++ NI+ +C + F +RLE L YE
Sbjct: 125 NSLAKAKTGARRIARRIAKCGFPCRFSKYRVVNIMATCHLPFRVRLEELVKEKPMQMCYE 184
Query: 112 PELFPGLIYRMKQPKIVLL-IFVSGKIVITGAKVRDETYTAFENIYPV 158
PEL PGL ++ LL +F +G++VI G + D E + P+
Sbjct: 185 PELAPGLTFKTDLNSSTLLKVFSTGRVVIMGPSL-DAISDLVEELVPL 231
>gi|257386786|ref|YP_003176559.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
gi|257169093|gb|ACV46852.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
Length = 186
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRTLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L +
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKEAVDKIVSRLEDL 182
>gi|76801184|ref|YP_326192.1| transcription factor [Natronomonas pharaonis DSM 2160]
gi|121696850|sp|Q3ITB1.1|TBP_NATPD RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|76557049|emb|CAI48623.1| TATA-binding transcription initiation factor [Natronomonas
pharaonis DSM 2160]
Length = 187
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAREAVDKIVSRLEEL 182
>gi|292654337|ref|YP_003534234.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433428869|ref|ZP_20407252.1| transcription factor [Haloferax sp. BAB2207]
gi|448293881|ref|ZP_21483984.1| transcription factor [Haloferax volcanii DS2]
gi|448543937|ref|ZP_21625398.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551097|ref|ZP_21629239.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448558528|ref|ZP_21633085.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448573579|ref|ZP_21641062.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448597726|ref|ZP_21654651.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595869|sp|D4GZA2.1|TBP1_HALVD RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|291371886|gb|ADE04113.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432195411|gb|ELK51946.1| transcription factor [Haloferax sp. BAB2207]
gi|445569802|gb|ELY24373.1| transcription factor [Haloferax volcanii DS2]
gi|445706079|gb|ELZ57966.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710653|gb|ELZ62451.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445712280|gb|ELZ64062.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718485|gb|ELZ70175.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445739187|gb|ELZ90696.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 189
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+VITG K + A + I L+E
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPTDAEAAVDVIISRLSEL 182
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR ++PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQEPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + E ++ L E +
Sbjct: 66 CTGAKSTDDVHESLEIVFDKLRELQ 90
>gi|407465173|ref|YP_006776055.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048361|gb|AFS83113.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 26/172 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++ N+V++ ++ KLDL I + EY+P+ VCTG
Sbjct: 9 AIVNVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
AKS++ ++ A + +I++K K IQNIV S ++ + LE A + S
Sbjct: 69 AKSQELAETAVFEVVKILRKGKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTL-PRSM 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 161
YEPE FPGLI+RM PK V+LIF SGK+V GAK+ + + + I+ +L E
Sbjct: 128 YEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDVHRSVNQIHALLEE 179
>gi|448451667|ref|ZP_21592967.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448483665|ref|ZP_21605812.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448514240|ref|ZP_21616992.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448526080|ref|ZP_21619698.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445692908|gb|ELZ45077.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445699280|gb|ELZ51311.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445810523|gb|EMA60548.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445820680|gb|EMA70489.1| transcription factor [Halorubrum arcis JCM 13916]
Length = 186
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 70 ANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P++V L+F SGK+V+TG ++ A + I
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPEDAAAAVDVI 175
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E R +Q
Sbjct: 67 CTGANSIEAVHESLDIVF---DELRALQ 91
>gi|435850312|ref|YP_007311898.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
gi|433660942|gb|AGB48368.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
Length = 183
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 26/164 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL KI + AEYN PK VCTGA
Sbjct: 8 IENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ A+ + ++G K + +QNIV S D+ + L +A G +
Sbjct: 68 KNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
YEPE FPGL+YR+ +PK+V+LIF SGK+V+TG K + E
Sbjct: 128 YEPEQFPGLVYRIDKPKVVVLIFSSGKLVVTGGKTPENCAEGVE 171
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ KI+N+V S + L + A GA Y + FPGL+YR+ +PK L+F SGK+
Sbjct: 5 NIKIENVVASTKLADEFDLTKIEAEFEGA--EYNKQKFPGLVYRVSEPKAAFLVFTSGKV 62
Query: 138 VITGAKVRDETYTAFENIYPVLTEF 162
V TGAK + +T N+ L E
Sbjct: 63 VCTGAKNVADVHTVISNMAKKLNEI 87
>gi|254167829|ref|ZP_04874678.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|254167914|ref|ZP_04874763.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623120|gb|EDY35686.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623205|gb|EDY35771.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
Length = 185
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 28/167 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
++NIV++ +L KLDL KIAL AEY P+ CTGA
Sbjct: 10 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFS- 108
K ++ + + ++ G + + KI QNIV D+ + L +A S G +
Sbjct: 70 KDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLENV 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGAK ++E A + +
Sbjct: 129 EYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKL 175
>gi|282162800|ref|YP_003355185.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282155114|dbj|BAI60202.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 26/167 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + ++DLK + L A+Y+P+ VCTG
Sbjct: 12 TIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTG 71
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +K + + +G + + +QNIV S D+ + L +A G +
Sbjct: 72 AKSIEDVDRGLKKVFKKMDSVGIKVDQNPEITVQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ PK+V+L+F SGK+V+TG K + A + I
Sbjct: 132 EYEPEQFPGLVYRLDHPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRI 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGK 136
K I+N+V S + I L+ + + GA Y+PE FPGL+YR K PK LIF SGK
Sbjct: 9 KTITIENVVASTAIGQEIDLKSVTLALEGA--DYDPEQFPGLVYRTKDPKTAALIFRSGK 66
Query: 137 IVITGAKVRDETYTAFENIY 156
IV TGAK ++ + ++
Sbjct: 67 IVCTGAKSIEDVDRGLKKVF 86
>gi|10803585|ref|NP_045983.1| transcription factor [Halobacterium sp. NRC-1]
gi|10803718|ref|NP_046116.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120020|ref|NP_395608.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120342|ref|NP_395930.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423949|sp|Q48325.1|TBPB_HALSA RecName: Full=TATA-box-binding protein B; AltName: Full=Box
A-binding protein B; Short=BAP B; AltName: Full=TATA
sequence-binding protein B; Short=TBP B; AltName:
Full=TATA-box factor B
gi|1070345|emb|CAA63691.1| TATA box binding protein [Halobacterium salinarum]
gi|2822316|gb|AAC82822.1| TbpB [Halobacterium sp. NRC-1]
gi|2822449|gb|AAC82955.1| TbpB [Halobacterium sp. NRC-1]
gi|10584112|gb|AAG20743.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|10584490|gb|AAG21065.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ +L +L L +++ AEYNP+ VCTGA
Sbjct: 10 IENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A I++LG ++QNIV S ++ + L +A G
Sbjct: 70 KSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V+L+F SGK+VITG + DE A ++ LTE
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDEAEQALAHVQDRLTEL 182
>gi|448417264|ref|ZP_21579282.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445678487|gb|ELZ30980.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 187
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++ L P + + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLELVFEKLRALQIPVEDDPEITVQNIVTSADLGRDLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K + A + I L++
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKQPSDAEKAVDEIVSRLSDL 182
>gi|289596646|ref|YP_003483342.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
gi|289534433|gb|ADD08780.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
Length = 181
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 28/167 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
++NIV++ +L KLDL KIAL AEY P+ CTGA
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 65
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKI--QNIVGSCDVKFPIRLEGLAYSHGAFS- 108
K ++ + + ++ G + + KI QNIV D+ + L +A S G +
Sbjct: 66 KDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLENV 124
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGAK ++E A + +
Sbjct: 125 EYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKL 171
>gi|448606630|ref|ZP_21659056.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448622378|ref|ZP_21669072.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445738838|gb|ELZ90350.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445754460|gb|EMA05865.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 189
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+VITG K + A + I L+E
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPKDAEAAVDVIISRLSEL 182
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR ++PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQEPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + E ++ L E +
Sbjct: 66 CTGAKSTDDVHESLEIVFDKLRELQ 90
>gi|354612537|ref|ZP_09030487.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353189234|gb|EHB54745.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 182
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 28/165 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNA-EYNPK------------------------VCTG 50
V N+V++ LD +LDL A + + +Y+P+ + TG
Sbjct: 4 VVNVVASGALDVELDLATFARELDDVVDYDPEKYPGAYVRFGDGEPLITLYRTGKYIITG 63
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHG-AF 107
A SE +S+ ++ ++++ G + +D F IQN V D++ P+ L LA G
Sbjct: 64 ASSEAESERLRDEFLVLLERHGIVSSAEDAWFSIQNYVCMADLERPLNLSALAIGLGLEI 123
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAF 152
+ YEPE FPGL+YR + + VLL+F +GK+VITGA+ E TAF
Sbjct: 124 TEYEPEQFPGLVYRPRDHECVLLVFATGKVVITGAQEITEADTAF 168
>gi|337284406|ref|YP_004623880.1| transcription factor [Pyrococcus yayanosii CH1]
gi|334900340|gb|AEH24608.1| transcription factor [Pyrococcus yayanosii CH1]
Length = 191
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 29/174 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDF-KIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS + + A K ++++ +G K IQN+V S D+ L+ +A S Y
Sbjct: 71 KSVEDIERAVGKLVQMLKGIGVSFKRAPLIDIQNMVFSGDIGREFNLDTVALSL-PNCEY 129
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
EPE FPG+IYR+K+P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAK---SEHDAWEAVRKLLRELEK 180
>gi|452205985|ref|YP_007486107.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452082085|emb|CCQ35336.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
>gi|257076321|ref|ZP_05570682.1| transcription factor [Ferroplasma acidarmanus fer1]
Length = 184
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 37/181 (20%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTG 50
+++NIV++ +L LDL +IAL +EY P+ CTG
Sbjct: 8 TIENIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSGKVNCTG 67
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-----DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
AK+ + K + II KL AK + D +QNIV D++ + L +A S G
Sbjct: 68 AKNLENVK---KTIDIIIDKLK-KAKIEVYDNPDIIVQNIVAVYDLESDLNLTDIAMSLG 123
Query: 106 AFS-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ YEPE FPGL+YR+++PK+VLL+F SGK+V TGAK E A + V E +K
Sbjct: 124 LENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEESEIEQA---VIKVKKELQK 180
Query: 165 V 165
V
Sbjct: 181 V 181
>gi|298675995|ref|YP_003727745.1| TATA-box-binding family protein [Methanohalobium evestigatum
Z-7303]
gi|298288983|gb|ADI74949.1| TATA-box binding family protein [Methanohalobium evestigatum
Z-7303]
Length = 187
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 28/165 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL KI + AEYN PK VCTGA
Sbjct: 12 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGA 71
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
K+ + A+ + +G KD +QNIV S D+ + L +A G +
Sbjct: 72 KNVDDVHVVIGNMAKKLNDIGIET-IKDPVITVQNIVASADLHAVLNLNAIAIGLGLENI 130
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
YEPE FPGL+YR+ PK+V+LIF SGK+V+TG K D E
Sbjct: 131 EYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVTGGKSPDHCERGVE 175
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ KI+N+V S + L + A GA Y + FPGL+YR+ PK L+F SGK+
Sbjct: 9 NIKIENVVASTKLAEEFDLTKIEAEFEGA--EYNKQKFPGLVYRVSNPKAAFLVFTSGKV 66
Query: 138 VITGAKVRDETYTAFENIYPVLTEF 162
V TGAK D+ + N+ L +
Sbjct: 67 VCTGAKNVDDVHVVIGNMAKKLNDI 91
>gi|2392146|pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 30/174 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS Q + A K A+ ++ +G KFK +QN+V S D+ L+ +A +
Sbjct: 71 KSVQDIERAVAKLAQKLKSIG--VKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPG+IYR+K+PK V+L+F SGKIV +GAK + + A + L ++
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY 181
>gi|10803661|ref|NP_046059.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237306|ref|YP_001690512.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|169237349|ref|YP_001690554.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|14423947|sp|O52018.1|TBPD_HALSA RecName: Full=TATA-box-binding protein D; AltName: Full=Box
A-binding protein D; Short=BAP D; AltName: Full=TATA
sequence-binding protein D; Short=TBP D; AltName:
Full=TATA-box factor D
gi|2822392|gb|AAC82898.1| TbpD [Halobacterium sp. NRC-1]
gi|167728372|emb|CAP15175.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728865|emb|CAP15756.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNP------------------------KVCTGA 51
++N+V++ +L +L L+++A AEYNP VCTGA
Sbjct: 10 IENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
+S A ++ LG +QNIV S + + L +A G
Sbjct: 70 QSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V+L+F SGK+VITG D+ + A E I+ LT+
Sbjct: 130 YEPEQFPGLVYRLNDPDVVVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDL 182
>gi|432963770|ref|XP_004086828.1| PREDICTED: TATA-box-binding protein-like [Oryzias latipes]
Length = 237
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 27/131 (20%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
+KN+VS V+L C+LDL I N +YNPK +CT A
Sbjct: 93 IKNVVSVVDLGCRLDLGAIGKALWNTQYNPKTYTGLIMRIRKPRTTANIYSTGKMICTAA 152
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVK-FPIRLEGLAYSHGAFSSY 110
S ++S+ AAR++ARI+QK GFP +F +F++ N V C VK F + LEGL S+ S+
Sbjct: 153 CSIEESRQAARRHARILQKAGFPVRFLNFRVINCV--CMVKTFCLNLEGLTRSNPQGFSF 210
Query: 111 EPELFPGLIYR 121
EPEL P + R
Sbjct: 211 EPELNPAVFLR 221
>gi|330834362|ref|YP_004409090.1| transcription factor [Metallosphaera cuprina Ar-4]
gi|329566501|gb|AEB94606.1| transcription factor [Metallosphaera cuprina Ar-4]
Length = 167
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS ++ A ++ + +++ G K +IQNIV S ++ + L+ A+
Sbjct: 38 VVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANMHVHVNLDKAAFLLE 97
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK DE Y A + I+ L E
Sbjct: 98 N-NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVYKAVKKIFDKLEEL 153
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PK+ LIF SGK+V+TGAK +E A + I L +
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRY 62
>gi|18977667|ref|NP_579024.1| transcription factor [Pyrococcus furiosus DSM 3638]
gi|397651790|ref|YP_006492371.1| transcription factor [Pyrococcus furiosus COM1]
gi|48429154|sp|P62000.1|TBP_PYRFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48429155|sp|P62001.1|TBP_PYRWO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1942573|pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
gi|1942574|pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
gi|498649|gb|AAA73447.1| TATA-binding protein [Pyrococcus woesei]
gi|1245168|gb|AAA93368.1| TATA-box binding protein [Pyrococcus furiosus]
gi|18893395|gb|AAL81419.1| transcription initiation factor TFIID (TATA-box factor) chain a
(TATA sequence-binding protein) (tbp) [Pyrococcus
furiosus DSM 3638]
gi|393189381|gb|AFN04079.1| transcription factor [Pyrococcus furiosus COM1]
Length = 191
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 30/174 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS Q + A K A+ ++ +G KFK +QN+V S D+ L+ +A +
Sbjct: 71 KSVQDIERAVAKLAQKLKSIG--VKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPG+IYR+K+PK V+L+F SGKIV +GAK + + A + L ++
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY 181
>gi|6573566|pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 30/174 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
KS Q + A K A+ ++ +G KFK +QN+V S D+ L+ +A +
Sbjct: 71 KSVQDIERAVAKLAQKLKSIG--VKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPG+IYR+K+PK V+L+F SGKIV +GAK + + A + L ++
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY 181
>gi|399576129|ref|ZP_10769886.1| transcription factor [Halogranum salarium B-1]
gi|399238840|gb|EJN59767.1| transcription factor [Halogranum salarium B-1]
Length = 186
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L + + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLNIVFDKLRELKIQVEDDPEITVQNIVTSADLGKNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +PK+V L+F SGK+VITG K ++ A E I L+E
Sbjct: 129 EYEPEQFPGLVYRLDEPKVVALLFGSGKLVITGGKKPEDAKHAVEVITERLSEL 182
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR + PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQNPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + ++ L E +
Sbjct: 66 CTGAKSTDDVHESLNIVFDKLRELK 90
>gi|296241961|ref|YP_003649448.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
gi|296094545|gb|ADG90496.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
Length = 193
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 87/172 (50%), Gaps = 26/172 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV+TV L+ +LDL+ I + Y P V TGA
Sbjct: 13 IENIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVVTGA 72
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 110
KS QQ A ++ +++ K K +IQNIV S D+ + LE AY S Y
Sbjct: 73 KSTQQLIEAVKRMIKVLLKYDIKVTGKPRIQIQNIVASGDIGAYVHLEKAAYLL-EDSMY 131
Query: 111 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
EPE FPGLI+RM+ P++VLLIF SGK+VITGAK E A NI L E
Sbjct: 132 EPEQFPGLIHRMRSPRVVLLIFSSGKMVITGAKEEVEVEKAVVNIGNQLLEL 183
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
+KI+NIV + ++ + LE + A + Y+P+ FPGLI+R+ +PK LIF SGK+V+
Sbjct: 11 YKIENIVATVILEHELDLELIETRIPAIT-YKPDQFPGLIFRLDKPKTTALIFKSGKMVV 69
Query: 140 TGAKVRDETYTAFENIYPVLTEF 162
TGAK + A + + VL ++
Sbjct: 70 TGAKSTQQLIEAVKRMIKVLLKY 92
>gi|448462784|ref|ZP_21597843.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445818005|gb|EMA67873.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 185
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 69 ANSIDAVHESLALVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V L+F SGK+V+TG D+ A + I
Sbjct: 129 YEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVI 174
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 8 ITIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA D + E++ V E R +Q
Sbjct: 66 CTGANSIDAVH---ESLALVFDELRALQ 90
>gi|222481033|ref|YP_002567270.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222453935|gb|ACM58200.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 185
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + ++ L P + +QNIV S D+ + L +A G
Sbjct: 69 ANSIDAVHESLAIVFDELRGLQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 128
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V L+F SGK+VITG D+ A + I
Sbjct: 129 YEPEQFPGLVYRIDEPDVVALLFGSGKLVITGGTSPDDAAAAVDVI 174
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 8 ITIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA D + E++ V E R +Q
Sbjct: 66 CTGANSIDAVH---ESLAIVFDELRGLQ 90
>gi|332159172|ref|YP_004424451.1| transcription factor [Pyrococcus sp. NA2]
gi|331034635|gb|AEC52447.1| transcription factor [Pyrococcus sp. NA2]
Length = 191
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 35/177 (19%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
KS Q + A A++IQKL G KFK IQN+V S D+ L+ +A +
Sbjct: 71 KSIQDIEKAV---AKLIQKLKGIGVKFKRAPLIDIQNMVFSGDLGREFNLDNVALTLPN- 126
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK A+E + +L E K
Sbjct: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAK---SEADAWEAVRKLLRELEK 180
>gi|448427036|ref|ZP_21583589.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445679083|gb|ELZ31564.1| transcription factor [Halorubrum terrestre JCM 10247]
Length = 186
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 70 ANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P++V L+F SGK+V+TG + A + I
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTTPADAEAAVDVI 175
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E R +Q
Sbjct: 67 CTGANSIEAVHESLDIVF---DELRALQ 91
>gi|257052326|ref|YP_003130159.1| transcription factor [Halorhabdus utahensis DSM 12940]
gi|256691089|gb|ACV11426.1| TATA-box binding family protein [Halorhabdus utahensis DSM 12940]
Length = 186
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFGKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
>gi|448578919|ref|ZP_21644278.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448589307|ref|ZP_21649466.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445724847|gb|ELZ76474.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445735735|gb|ELZ87283.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLGIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+VITG K ++ A + I L++
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAAAAVDVIISRLSDL 182
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR + PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQNPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + ++ L E +
Sbjct: 66 CTGAKSTDDVHESLGIVFDKLRELQ 90
>gi|16120311|ref|NP_395899.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423950|sp|Q9HHE9.1|TBPF_HALSA RecName: Full=TATA-box-binding protein F; AltName: Full=Box
A-binding protein F; Short=BAP F; AltName: Full=TATA
sequence-binding protein F; Short=TBP F; AltName:
Full=TATA-box factor F
gi|10584455|gb|AAG21034.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ +L +L L ++A AEYNP+ VCTGA
Sbjct: 10 IENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFKD-FKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS A +++LG K+QNIV S ++ + L +A G
Sbjct: 70 KSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V+L+F SGK+VITGA + A ++ LTE
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAESADAQHALAHVNDRLTEL 182
>gi|448611222|ref|ZP_21661856.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445743654|gb|ELZ95135.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 TIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG-AFS 108
AKS + +++L P + +QNIV S D+ + L +A G
Sbjct: 69 AKSTDGVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEHI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+VITG K + A + I L++
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPQDAEDAVDVIMSRLSDL 182
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 140
I+N+V S + + L+ +A GA Y+PE FPGL+YR + PK LIF SGKIV T
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 141 GAKVRDETYTAFENIYPVLTEFR 163
GAK D + + E ++ L E +
Sbjct: 68 GAKSTDGVHESLEIVFDKLRELQ 90
>gi|448433649|ref|ZP_21585976.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445686241|gb|ELZ38577.1| transcription factor [Halorubrum tebenquichense DSM 14210]
Length = 186
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 25/153 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 70 ANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
YEPE FPGL+YR+ +P++V L+F SGK+V+TG
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGG 162
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTADPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E R +Q
Sbjct: 67 CTGANSIEAVHGSLDIVF---EELRALQ 91
>gi|159905083|ref|YP_001548745.1| transcription factor [Methanococcus maripaludis C6]
gi|226703561|sp|A9A840.1|TBP_METM6 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|159886576|gb|ABX01513.1| TATA-box binding family protein [Methanococcus maripaludis C6]
Length = 181
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 27 CKLDLKKIALQA-RNAEYNPKVCTGAKSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQN 84
C+L K+AL R+ + N CTGAK ++ + +A K + +++ G + +QN
Sbjct: 44 CRLSEPKVALLIFRSGKLN---CTGAKCKEDAVIAIHKIIKELKEAGMDLIDNPEVNVQN 100
Query: 85 IVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144
+V + ++ L+ + S + YEPE FPGL+YR+ PK+V+LIF SGK+VITG KV
Sbjct: 101 MVATTELGMEPNLDDI--STLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKV 158
Query: 145 RDETYTAFENIYPVLTEFRK 164
++ Y A++ I L E +
Sbjct: 159 IEDAYKAYDKISKTLKELEE 178
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS--YEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ KI N+V S + I LE Y+ + YEPE FPGL+ R+ +PK+ LLIF SGK
Sbjct: 4 EIKIVNVVVSTQIGTDIDLE---YAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGK 60
Query: 137 IVITGAKVRDETYTAFENIYPVLTE 161
+ TGAK +++ A I L E
Sbjct: 61 LNCTGAKCKEDAVIAIHKIIKELKE 85
>gi|433591131|ref|YP_007280627.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448334667|ref|ZP_21523835.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|433305911|gb|AGB31723.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445619396|gb|ELY72936.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ ++ +L+L+ +A+ + A+Y+P+ VCTG
Sbjct: 9 NIENVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L K + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDAVHESLHIVFDKLRELQIQVEKNPEIIVQNIVSSADLGRTLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ QP++V L+F SGK+V+TG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDQPEVVALLFGSGKLVVTGGKKGDDAKQAVDVITTRLEEL 182
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 78 KDFKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGK 136
+ I+N+V S + + LE +A GA Y+PE FPGL+YR + PK LIF SGK
Sbjct: 6 ESINIENVVASTSIGQELELESVAMDLKGA--DYDPEQFPGLVYRTQNPKSAALIFRSGK 63
Query: 137 IVITGAKVRDETYTAFENIYPVLTEFRKVQ 166
IV TGAK D + E+++ V + R++Q
Sbjct: 64 IVCTGAKSTDAVH---ESLHIVFDKLRELQ 90
>gi|15921539|ref|NP_377208.1| transcription factor [Sulfolobus tokodaii str. 7]
Length = 166
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS + A ++ + +++ G K +IQNIV S ++ + L+ A+
Sbjct: 38 VVTGAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLE 97
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
+ YEPE FPGLIYRM+ P++VLLIF SGK+VITGAK +E + A + I+ L E
Sbjct: 98 N-NMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIFDKLVEL 153
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PK+ LIF SGK+V+TGAK DE A + I L +
Sbjct: 9 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRY 62
>gi|448536157|ref|ZP_21622402.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445702600|gb|ELZ54544.1| transcription factor [Halorubrum hochstenium ATCC 700873]
Length = 186
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 25/153 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 70 ANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGKSLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGA 142
YEPE FPGL+YR+ +P++V L+F SGK+V+TG
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGG 162
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTADPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA + + + + ++ E R +Q
Sbjct: 67 CTGANSIEAVHGSLDIVF---EELRALQ 91
>gi|15791061|ref|NP_280885.1| transcription factor [Halobacterium sp. NRC-1]
gi|169236811|ref|YP_001690011.1| transcription factor [Halobacterium salinarum R1]
gi|14423951|sp|Q9HN56.1|TBPE_HALSA RecName: Full=TATA-box-binding protein E; AltName: Full=Box
A-binding protein E; Short=BAP E; AltName: Full=TATA
sequence-binding protein E; Short=TBP E; AltName:
Full=TATA-box factor E
gi|10581658|gb|AAG20365.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167727877|emb|CAP14665.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R +++L + + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P++V L+F SGK+VITG K + A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPKDAEHAVDKITSRLEEL 182
>gi|409096743|ref|ZP_11216767.1| transcription factor [Thermococcus zilligii AN1]
Length = 191
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 27/178 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +L+L+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARII-QKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS K+ K ++ +K+G K IQN+V S D+ L+ +A S
Sbjct: 71 KSVDDIKMGVNKLIELLSKKVGTRFTKPPQIDIQNMVFSGDIGMEFNLDAVALSLPN-CE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167
YEPE FPG+IYR+K PK V+L+F SGKIV +GAK ++ + A + + L ++ +++
Sbjct: 130 YEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSENDAWEAVKRLIRELEKYDLIEE 187
>gi|48477578|ref|YP_023284.1| transcription factor [Picrophilus torridus DSM 9790]
gi|56749679|sp|Q6L1R1.1|TBP_PICTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48430226|gb|AAT43091.1| TATA-box binding protein [Picrophilus torridus DSM 9790]
Length = 184
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 34/167 (20%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTG 50
+++NIV++ +L LDL KIAL +EY P+ CTG
Sbjct: 8 TIENIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTG 67
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-----DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
AK+ K + II KL A + D +QNIV D++ + L +A S G
Sbjct: 68 AKNLDDVK---KTIDIIIDKLK-KADIEVYDNPDIIVQNIVAVYDLESNLNLTDIAMSLG 123
Query: 106 AFS-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTA 151
+ YEPE FPGL+YR+++PK+VLL+F SGK+V TGAK +E A
Sbjct: 124 LENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEENEIEQA 170
>gi|410670721|ref|YP_006923092.1| TATA box binding protein [Methanolobus psychrophilus R15]
gi|409169849|gb|AFV23724.1| TATA box binding protein [Methanolobus psychrophilus R15]
Length = 183
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL KI + AEYN PK VCTGA
Sbjct: 8 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ A+ + +G K + +QNIV S D++ + L +A G +
Sbjct: 68 KNVADVHTVIGNMAKKLNGIGIKTIEKPEITVQNIVASADLQAVLNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR++ PK+V+LIF SGK+V+TG K
Sbjct: 128 YEPEQFPGLVYRIEDPKVVVLIFSSGKLVVTGGK 161
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGL-AYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 137
+ KI+N+V S + L + A GA Y + FPGL+YR+ PK L+F SGK+
Sbjct: 5 NIKIENVVASTKLAEEFDLTKIEAEFEGA--EYNKQKFPGLVYRVSDPKAAFLVFTSGKV 62
Query: 138 VITGAKVRDETYTAFENI 155
V TGAK + +T N+
Sbjct: 63 VCTGAKNVADVHTVIGNM 80
>gi|14521176|ref|NP_126651.1| transcription factor [Pyrococcus abyssi GE5]
gi|13124586|sp|Q9V024.1|TBP_PYRAB RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|5458394|emb|CAB49882.1| TATA box binding protein TFIIB-BBRE complex, chain A [Pyrococcus
abyssi GE5]
gi|380741746|tpe|CCE70380.1| TPA: transcription factor [Pyrococcus abyssi GE5]
Length = 191
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 35/177 (19%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++V+L +LDL+K+ N++YNP+ V TGA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 52 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK A+E + +L E K
Sbjct: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAK---SEADAWEAVRKLLRELEK 180
>gi|13542225|ref|NP_111913.1| transcription factor [Thermoplasma volcanium GSS1]
gi|24638241|sp|Q978J5.1|TBP_THEVO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|14325659|dbj|BAB60562.1| TATA-binding protein [TBP] [Thermoplasma volcanium GSS1]
Length = 184
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 37/181 (20%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTG 50
+++NIV++ +L LDL +IAL +EY P+ CTG
Sbjct: 8 TIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTG 67
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-----DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
AK+ + K R II KL A + D +QNIV D++ + L +A S G
Sbjct: 68 AKNIEDVK---RTIKIIIDKLK-AANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLG 123
Query: 106 AFS-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164
+ YEPE FPGL+YR+++P++VLL+F SGK+V TGAK E A + V E +K
Sbjct: 124 LENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQA---VIKVKKELQK 180
Query: 165 V 165
V
Sbjct: 181 V 181
>gi|312136408|ref|YP_004003745.1| tata binding protein of transcription factor tfiid [Methanothermus
fervidus DSM 2088]
gi|311224127|gb|ADP76983.1| TATA binding protein of transcription factor TFIID [Methanothermus
fervidus DSM 2088]
Length = 183
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 28/155 (18%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++NIV++ L +DL KI+ ++ +N K VCTG
Sbjct: 9 EIENIVASATLGRPIDLSKISKALKSVNFNRKQFPGLVYKLDKPKTAALIFGSGKLVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLG--FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS 108
AKS + S A + I+++ P + + KIQNIV S ++ P+ L+ +A + +
Sbjct: 69 AKSVEDSIKAIKTTVNKIREVDPDIPEDY-EIKIQNIVASANLSKPLNLDEIAMTL-ENT 126
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +PK+VLL+F SGK+V TGA+
Sbjct: 127 EYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCTGAR 161
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
+ +I+NIV S + PI L ++ + + + + + FPGL+Y++ +PK LIF SGK+V
Sbjct: 7 EIEIENIVASATLGRPIDLSKISKALKSVN-FNRKQFPGLVYKLDKPKTAALIFGSGKLV 65
Query: 139 ITGAKVRDETYTAF 152
TGAK +++ A
Sbjct: 66 CTGAKSVEDSIKAI 79
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 24/82 (29%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ NL L+L +IA+ N EY P+ VCTGA
Sbjct: 101 IQNIVASANLSKPLNLDEIAMTLENTEYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCTGA 160
Query: 52 KSEQQSKLAARKYARIIQKLGF 73
+ + +KL +K +++L
Sbjct: 161 RDPKDAKLGVKKTKERLKELNL 182
>gi|397780477|ref|YP_006544950.1| TATA-box-binding protein [Methanoculleus bourgensis MS2]
gi|396938979|emb|CCJ36234.1| TATA-box-binding protein AltName: Full=TATA-box factor
[Methanoculleus bourgensis MS2]
Length = 237
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKVCTGAKSEQQS-KLAA------------- 61
++NIV++ + LDL +A Q ++AEYN K G Q K+AA
Sbjct: 62 IENIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 121
Query: 62 ---RKYARIIQKLG---------FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
+R +Q LG P +K+QNIV S D+ PI L +A
Sbjct: 122 KSIDNLSRGLQILGDQLRALNIDIPENLT-YKVQNIVTSADLGTPINLNKIAVGFNLDKI 180
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ PK+V+L+F SGK++ITG K ++ A + I L+
Sbjct: 181 EYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKQPEDARRAVQRILSELSSL 234
>gi|341581911|ref|YP_004762403.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus sp. 4557]
gi|340809569|gb|AEK72726.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus sp. 4557]
Length = 179
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 31/168 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPKV------------------------CTGA 51
V+N+V++++L +D++K+A + + YNP V CTGA
Sbjct: 5 VENVVASIDLHGGIDVEKVASKLDSVHYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGA 64
Query: 52 KSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKF-PIRLEGLAYSHGAF 107
KS + + A K R ++ +G KF+ + ++QNIV + D+ + L+ +A +
Sbjct: 65 KSVETIRKATEKLKRTLEAMGM--KFRGEPEIQVQNIVAAGDLGLGTLDLDIVALTLPNV 122
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE+FPG++YR+K ++ +LIF SG++V++GA+ ++ A E +
Sbjct: 123 E-YEPEIFPGVVYRVKNSRMTVLIFNSGRVVVSGARTEEDIKRAVEEL 169
>gi|374633744|ref|ZP_09706109.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
gi|373523532|gb|EHP68452.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
Length = 167
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHG 105
V TGAKS ++ A ++ + +++ G K +IQNIV S ++ + L+ A+
Sbjct: 38 VVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANMHVHVNLDKAAFLLE 97
Query: 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156
+ YEPE FPGLI+RM P++VLLIF SGK+VITGAK DE Y A + I+
Sbjct: 98 N-NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVYRAVKKIF 147
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
Y+P+ FPGLI+R++ PK+ LIF SGK+V+TGAK +E A + I L +
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRY 62
>gi|335441192|ref|ZP_08561913.1| transcription factor [Halorhabdus tiamatea SARL4B]
gi|334888363|gb|EGM26662.1| transcription factor [Halorhabdus tiamatea SARL4B]
Length = 186
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + + ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLQIVFGKLRDLNIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K D+ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
>gi|307352931|ref|YP_003893982.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156164|gb|ADN35544.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 186
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 32/176 (18%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ + +LDL+ I + ++AEYN K V TGA
Sbjct: 11 IENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVLTGA 70
Query: 52 KS-EQQSK---LAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAF 107
KS + SK + K + KL P ++K+QNIV S D+ PI L +A
Sbjct: 71 KSIDSLSKGLDILGDKLREL--KLDIPKNL-EYKVQNIVTSADLGTPINLNKIAVGFNLE 127
Query: 108 S-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +PK+V+L+F SGK++ITG K ++ A + I L+
Sbjct: 128 RIEYEPEQFPGLVYRLDEPKVVVLLFGSGKLIITGGKQPEDAKKAVQKILSDLSNL 183
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
KI+NIV S V + L+ + + Y + FPG++ RM++PKI L+F SGK+V+
Sbjct: 9 LKIENIVASAKVAKELDLQ-MINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVL 67
Query: 140 TGAKVRDETYTAFENIYPVLTEFR 163
TGAK D + + L E +
Sbjct: 68 TGAKSIDSLSKGLDILGDKLRELK 91
>gi|20089176|ref|NP_615251.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638262|sp|Q8TTZ7.1|TBP3_METAC RecName: Full=TATA-box-binding protein 3; AltName: Full=Box
A-binding protein 3; Short=BAP 3; AltName: Full=TATA
sequence-binding protein 3; Short=TBP 3; AltName:
Full=TATA-box factor 3
gi|19914048|gb|AAM03731.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 30/162 (18%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQA-RNAEYN-------------PK-----------VCT 49
+++N+V++ L + DL KI AEYN PK VCT
Sbjct: 6 TIENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCT 65
Query: 50 GAKSEQQSKLAARKYARIIQKLGFPAKFK---DFKIQNIVGSCDVKFPIRLEGLAYSHGA 106
GAK+ + A A ++ +G K + +QNIV S D+K + L +A + G
Sbjct: 66 GAKTINNAHKAITNLANKLKDIGCD-KINLEPEIHVQNIVASADLKTTLNLNTIAIAFGL 124
Query: 107 FS-SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
+ YEPE+FPGLIYR++ PK+V+L+F SGK+VITG K ++
Sbjct: 125 ENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVITGGKCEED 166
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 82 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 141
I+N+V S + L + S + Y FPGL+YR+ PK LIF SGK+V TG
Sbjct: 7 IENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCTG 66
Query: 142 AKVRDETYTAFENI 155
AK + + A N+
Sbjct: 67 AKTINNAHKAITNL 80
>gi|448406902|ref|ZP_21573334.1| transcription factor [Halosimplex carlsbadense 2-9-1]
gi|445676708|gb|ELZ29225.1| transcription factor [Halosimplex carlsbadense 2-9-1]
Length = 186
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R ++ L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P +V L+F SGK+VITG K ++ A + I L +
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKQPEDAEEAVDKIVSRLEDL 182
>gi|374628586|ref|ZP_09700971.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906699|gb|EHQ34803.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 186
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 31/174 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++NIV++ + +LDL+ I + ++AEYN K V TGA
Sbjct: 11 IENIVASAKVADELDLQMINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 70
Query: 52 KSEQQSKLAARKYARIIQ--KLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
KS ++ KL P ++K+QNIV S D+ PI L +A
Sbjct: 71 KSIDNLSRGLEILGEKLRALKLDIPTNL-EYKVQNIVTSADLGSPINLNKIAVGFNLDRI 129
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+++PK+V+L+F SGK++ITG K ET A + ++++
Sbjct: 130 EYEPEQFPGLVYRLEEPKVVVLLFGSGKLIITGGK---ETKDAKAAVIKIMSDL 180
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
KI+NIV S V + L+ + + Y + FPG++ RM+ PKI L+F SGK+V+
Sbjct: 9 LKIENIVASAKVADELDLQ-MINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVL 67
Query: 140 TGAKVRDETYTAFE 153
TGAK D E
Sbjct: 68 TGAKSIDNLSRGLE 81
>gi|448503146|ref|ZP_21612913.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445693155|gb|ELZ45315.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+V+N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 10 TVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTG 69
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHG-AFSS 109
A S + ++ L P + + +QNIV S D+ + L +A G
Sbjct: 70 ANSIDAVYESLDIVFEELRALQIPIEDPEVTVQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENI 155
YEPE FPGL+YR+ +P +V L+F SGK+V+TG ++ A + I
Sbjct: 130 YEPEQFPGLVYRLDEPDVVALLFGSGKVVVTGGTSPEDAAAAVDVI 175
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
++N+V S + + L+ +A GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTTDPKSAALIFRSGKIV 66
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGA D Y + + ++ E R +Q
Sbjct: 67 CTGANSIDAVYESLDIVF---EELRALQ 91
>gi|383619863|ref|ZP_09946269.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|435849205|ref|YP_007311455.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|448312598|ref|ZP_21502340.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|448315726|ref|ZP_21505366.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|448401315|ref|ZP_21571551.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|448696585|ref|ZP_21697997.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|448708683|ref|ZP_21701101.1| transcription factor [Halobiforma nitratireducens JCM 10879]
gi|433675473|gb|AGB39665.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|445601049|gb|ELY55043.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|445610861|gb|ELY64628.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445666578|gb|ELZ19237.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445783213|gb|EMA34048.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|445793090|gb|EMA43681.1| transcription factor [Halobiforma nitratireducens JCM 10879]
Length = 186
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + R +++L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P++V L+F SGK+VITG K ++ A + I L +
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDL 182
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR + PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQNPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + ++ L E +
Sbjct: 66 CTGAKSTDDVHESLRIVFDKLRELQ 90
>gi|433593455|ref|YP_007296196.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433307965|gb|AGB33776.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 193
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEY-------------NPK-----------VCTG 50
+++N+V++ +D +L+L+ +A +Y NPK VCTG
Sbjct: 16 TIENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTG 75
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++ LG + IQNIV S D+ + L +A G +
Sbjct: 76 AKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENI 135
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YRM P +V LIF SGK+V+TGAK + A + I L E
Sbjct: 136 EYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGAKEPADAGRALDVISSRLDEL 189
>gi|448335944|ref|ZP_21525067.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|448404754|ref|ZP_21572552.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445614729|gb|ELY68395.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445663265|gb|ELZ16018.1| transcription factor [Haloterrigena limicola JCM 13563]
Length = 186
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEY-------------NPK-----------VCTG 50
+++N+V++ +D +L+L+ +A +Y NPK VCTG
Sbjct: 9 TIENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++ LG + IQNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YRM P +V LIF SGK+V+TGAK + A + I L E
Sbjct: 129 EYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGAKEPADAGRALDVISSRLDEL 182
>gi|448322383|ref|ZP_21511854.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445601591|gb|ELY55578.1| transcription factor [Natronococcus amylolyticus DSM 10524]
Length = 186
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ ++ +LDL+ +A+ A+Y+P+ VCTGA
Sbjct: 10 IENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFPAK-FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
KS + + + ++ L K + +QNIV S D+ + L +A G +
Sbjct: 70 KSIENVHESLKIVFEELRDLQIEVKEGPEIVVQNIVSSADLGRNLNLNAIAIGLGLENIE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P +V L+F SGK+V+TG K D+ A + I L +
Sbjct: 130 YEPEQFPGLVYRLDEPNVVALLFGSGKLVVTGGKEVDDARQAIDVIVERLEDL 182
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
+I+N+V S + + L+ LA GA Y+PE FPGL+YR PK LIF SGKIV
Sbjct: 8 IEIENVVASSSIGQELDLQSLAMDLEGA--DYDPENFPGLVYRTTDPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRKVQ 166
TGAK + + E++ V E R +Q
Sbjct: 66 CTGAKSIENVH---ESLKIVFEELRDLQ 90
>gi|21227130|ref|NP_633052.1| transcription factor [Methanosarcina mazei Go1]
gi|452209606|ref|YP_007489720.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638251|sp|Q8PY36.1|TBP2_METMA RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|20905461|gb|AAM30724.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099508|gb|AGF96448.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL I Q AEYN PK VCTGA
Sbjct: 8 IENVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ A+ + +G + +QNIV S D+ + L +A G +
Sbjct: 68 KNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFE 153
YEPE FPGL+YR+ +PK+V+LIF SGK+V+TG K ++ + E
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKTPEDCESGVE 171
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVI 139
KI+N+V S + L + S + Y + FPGL+YR+ PK L+F SGK+V
Sbjct: 6 IKIENVVASTKLAEEFDLT-VIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVC 64
Query: 140 TGAKVRDETYTAFENI 155
TGAK + +T N+
Sbjct: 65 TGAKNVADVHTVIGNM 80
>gi|359417767|ref|ZP_09209836.1| transcription factor [Candidatus Haloredivivus sp. G17]
gi|358031860|gb|EHK00695.1| transcription factor [Candidatus Haloredivivus sp. G17]
Length = 182
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 26/158 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
++N+V++ + +L L +IA+ N EY P+ VCTG
Sbjct: 8 EIQNVVASATFNQRLPLDRIAIYLENTEYEPEQFPGLVYRLENPKAAALLFGSGKVVCTG 67
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 109
KS +Q+K A K +++ K D +QNIV S ++ + L +A+ +
Sbjct: 68 TKSPEQAKEATHKIIDELREADVEIDTKPDVTVQNIVASSQLEGTLNLNRIAFEL-VGTE 126
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDE 147
YEPE FPGL+YR+ +P++V L+F SG +V TG + ++
Sbjct: 127 YEPEQFPGLVYRLDEPQVVFLLFSSGNLVCTGGRTYED 164
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
D +IQN+V S + L+ +A + + YEPE FPGL+YR++ PK L+F SGK+V
Sbjct: 6 DIEIQNVVASATFNQRLPLDRIAI-YLENTEYEPEQFPGLVYRLENPKAAALLFGSGKVV 64
Query: 139 ITGAKVRDETYTAFENIYPVLTEFRK 164
TG K ++ A E + ++ E R+
Sbjct: 65 CTGTKSPEQ---AKEATHKIIDELRE 87
>gi|448349348|ref|ZP_21538190.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445640591|gb|ELY93678.1| transcription factor [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGA 51
++N+V++ +D +L+L+++ A+YNP+ VCTGA
Sbjct: 10 IENVVASTGIDQELNLEQVGDDLPEADYNPEHFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 52 KSEQQSKLAARKYARIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
SE + + +++ LG + ++QNIV S D L +A G
Sbjct: 70 SSEPAVRESLSIVFEVLRGLGIDIPESPTIEVQNIVASIDFGSQFNLNAIAIGLGLEDVE 129
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ P V L+F SGK +ITGAK D A + LT+
Sbjct: 130 YEPEQFPGLVYRLDDPSAVALLFGSGKAIITGAKTTDAVTHATNAVETRLTDL 182
>gi|91773461|ref|YP_566153.1| transcription factor [Methanococcoides burtonii DSM 6242]
gi|91712476|gb|ABE52403.1| TATA-box binding protein [Methanococcoides burtonii DSM 6242]
Length = 206
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 26/154 (16%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARNAEYN-------------PK-----------VCTGA 51
++N+V++ L + DL KI + AEYN PK VCTGA
Sbjct: 31 IENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVYRVTDPKAAFLVFTSGKVVCTGA 90
Query: 52 KSEQQSKLAARKYARIIQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFS-S 109
K+ + A+ + +G + +QNIV S D+ + L +A G +
Sbjct: 91 KNVADVHIVIGNMAKKLNGIGIETIADPEITVQNIVASADLHATLNLNAIAIGLGLENIE 150
Query: 110 YEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ PK+V+LIF SGK+V+TG K
Sbjct: 151 YEPEQFPGLVYRIADPKVVVLIFSSGKLVVTGGK 184
>gi|389845649|ref|YP_006347888.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448616732|ref|ZP_21665442.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388242955|gb|AFK17901.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445751387|gb|EMA02824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 189
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + ++ L P + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRDLQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAK 143
YEPE FPGL+YR+ +P +V L+F SGK+VITG K
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGK 163
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 80 FKIQNIVGSCDVKFPIRLEGLAYS-HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV 138
I+N+V S + + L+ +A GA Y+PE FPGL+YR + PK LIF SGKIV
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGA--DYDPEQFPGLVYRTQNPKSAALIFRSGKIV 65
Query: 139 ITGAKVRDETYTAFENIYPVLTEFR 163
TGAK D+ + + E ++ L + +
Sbjct: 66 CTGAKSTDDVHESLEIVFDKLRDLQ 90
>gi|448347682|ref|ZP_21536553.1| transcription factor [Natrinema altunense JCM 12890]
gi|445630384|gb|ELY83650.1| transcription factor [Natrinema altunense JCM 12890]
Length = 181
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 31/178 (17%)
Query: 16 VKNIVSTVNLDCKLDLKKIALQARN-AEYNPK------------------------VCTG 50
V N+VS+ +LD +LDL+ +A + + +Y+P + TG
Sbjct: 4 VVNVVSSGSLDIELDLEAVAQELGDLVDYDPGKYPGAYFRFGESEPLITLYRTGKYIITG 63
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFKD--FKIQNIVGSCDVKFPIRLEGLAYSHG-AF 107
+ SEQ++ ++ + G + D F IQN VG D++ + L LA G
Sbjct: 64 SSSEQEAMEIRDRFLTTLHDHGVLPESDDSWFSIQNYVGVGDLEESVNLSALAIGLGLEK 123
Query: 108 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165
+ YEPE FPGL+YR + VLL+F SGK VITGAK +E +AF + +EFR +
Sbjct: 124 TEYEPEQFPGLVYRPTDYESVLLVFGSGKTVITGAKSIEEAESAFRSFR---SEFRSL 178
>gi|322368133|ref|ZP_08042702.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
gi|320552149|gb|EFW93794.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
Length = 186
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 15 SVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTG 50
+++N+V++ + +LDL+ +A+ A+Y+P+ VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 51 AKSEQQSKLAARKYARIIQKLGFPAKFK-DFKIQNIVGSCDVKFPIRLEGLAYSHGAFS- 108
AKS + +++L + +QNIV S D+ + L +A G +
Sbjct: 69 AKSTADVHESLEIVFDKLRELNIQVNDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 109 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162
YEPE FPGL+YR+ +P++V L+F SGK+VITG K ++ A + I L E
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEQAVDKIVSRLEEL 182
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,322,977,342
Number of Sequences: 23463169
Number of extensions: 84598102
Number of successful extensions: 165789
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 161873
Number of HSP's gapped (non-prelim): 1685
length of query: 167
length of database: 8,064,228,071
effective HSP length: 128
effective length of query: 39
effective length of database: 9,355,909,735
effective search space: 364880479665
effective search space used: 364880479665
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)