Query 031013
Match_columns 167
No_of_seqs 147 out of 514
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytb_A Protein (tata binding p 100.0 8.7E-59 3E-63 371.2 19.9 155 10-164 1-179 (180)
2 3eik_A Tata-box-binding protei 100.0 1.8E-58 6.3E-63 378.3 20.7 156 10-165 39-218 (218)
3 2z8u_A Tata-box-binding protei 100.0 1.6E-56 5.3E-61 360.3 20.6 152 12-164 11-187 (188)
4 1rm1_A Tata-box binding protei 100.0 2.4E-56 8.3E-61 370.5 20.2 156 10-165 61-240 (240)
5 1mp9_A Tata-binding protein; t 100.0 1.3E-55 4.5E-60 357.4 21.4 155 10-165 9-188 (198)
6 1ais_A TBP, protein (tata-bind 100.0 1.6E-55 5.6E-60 352.8 20.4 151 11-162 6-181 (182)
7 1rm1_A Tata-box binding protei 100.0 1.7E-33 5.9E-38 233.4 13.0 116 47-163 32-147 (240)
8 1ytb_A Protein (tata binding p 100.0 5.9E-30 2E-34 204.4 12.2 84 79-163 4-87 (180)
9 1ais_A TBP, protein (tata-bind 100.0 3.9E-28 1.3E-32 194.1 11.0 85 77-162 6-90 (182)
10 3eik_A Tata-box-binding protei 100.0 5.6E-28 1.9E-32 197.8 12.1 83 79-162 42-124 (218)
11 1mp9_A Tata-binding protein; t 99.9 1.5E-27 5.3E-32 192.9 12.4 85 77-162 10-94 (198)
12 2z8u_A Tata-box-binding protei 99.9 1.5E-27 5.2E-32 191.6 11.2 85 77-162 10-94 (188)
13 3vn5_A RNAse HIII, ribonucleas 93.8 0.025 8.7E-07 46.8 2.2 39 112-150 25-63 (257)
14 2d0b_A RNAse HIII, ribonucleas 93.6 0.065 2.2E-06 45.3 4.5 36 113-148 27-62 (310)
15 2ctf_A Vigilin; K homology typ 81.7 2.5 8.4E-05 29.8 5.0 41 115-165 56-96 (102)
16 1t00_A Thioredoxin, TRX; redox 77.7 2.3 7.9E-05 28.2 3.6 29 128-156 80-110 (112)
17 2jvf_A De novo protein M7; tet 77.5 3.6 0.00012 28.1 4.5 28 47-74 52-79 (96)
18 2trx_A Thioredoxin; electron t 75.6 4.7 0.00016 26.3 4.8 29 128-156 77-107 (108)
19 1dby_A Chloroplast thioredoxin 75.1 4.5 0.00015 26.4 4.5 28 128-155 76-105 (107)
20 3gnj_A Thioredoxin domain prot 75.0 5.4 0.00018 26.1 4.9 29 128-156 79-109 (111)
21 1fb6_A Thioredoxin M; electron 74.5 3.7 0.00013 26.6 4.0 28 128-155 75-104 (105)
22 3hz4_A Thioredoxin; NYSGXRC, P 74.5 7.1 0.00024 27.4 5.7 35 128-162 81-117 (140)
23 1thx_A Thioredoxin, thioredoxi 73.9 4.2 0.00014 26.8 4.2 29 128-156 82-112 (115)
24 3krm_A Insulin-like growth fac 73.6 4.4 0.00015 29.8 4.6 30 136-167 133-162 (163)
25 2o8v_B Thioredoxin 1; disulfid 73.5 5.2 0.00018 27.8 4.8 29 128-156 97-127 (128)
26 2e0q_A Thioredoxin; electron t 73.0 5.3 0.00018 25.5 4.4 29 128-156 72-102 (104)
27 1w4v_A Thioredoxin, mitochondr 71.8 6.3 0.00021 26.7 4.8 29 128-156 88-118 (119)
28 2i4a_A Thioredoxin; acidophIle 71.6 5 0.00017 26.0 4.1 27 128-154 77-105 (107)
29 3tco_A Thioredoxin (TRXA-1); d 71.4 4.9 0.00017 26.1 4.0 29 128-156 78-108 (109)
30 2es7_A Q8ZP25_salty, putative 70.4 5.2 0.00018 29.0 4.2 30 128-157 94-125 (142)
31 1ep7_A Thioredoxin CH1, H-type 69.7 7.4 0.00025 25.5 4.6 28 128-156 81-110 (112)
32 2yzu_A Thioredoxin; redox prot 69.6 3.6 0.00012 26.7 2.9 29 128-156 75-105 (109)
33 3gix_A Thioredoxin-like protei 69.4 9 0.00031 27.5 5.4 33 128-160 80-124 (149)
34 1v98_A Thioredoxin; oxidoreduc 68.3 7.9 0.00027 26.9 4.8 29 128-156 107-137 (140)
35 3m9j_A Thioredoxin; oxidoreduc 67.5 6.4 0.00022 25.4 3.9 27 128-155 76-104 (105)
36 2opv_A KHSRP protein; KH domai 66.1 8.3 0.00029 25.6 4.3 33 126-160 44-84 (85)
37 2av4_A Thioredoxin-like protei 65.8 7.2 0.00025 29.8 4.3 34 126-159 96-141 (160)
38 2qgv_A Hydrogenase-1 operon pr 65.8 8.9 0.00031 28.4 4.8 61 95-156 56-124 (140)
39 3p2a_A Thioredoxin 2, putative 65.2 8.6 0.00029 27.0 4.5 30 128-157 112-143 (148)
40 3qfa_C Thioredoxin; protein-pr 65.2 7 0.00024 26.5 3.8 27 128-155 87-115 (116)
41 2ppt_A Thioredoxin-2; thiredox 64.9 9.6 0.00033 27.5 4.8 29 128-156 121-151 (155)
42 4euy_A Uncharacterized protein 64.9 5 0.00017 26.4 2.9 28 128-155 74-103 (105)
43 2j23_A Thioredoxin; immune pro 64.7 6.3 0.00021 26.8 3.5 27 128-155 91-119 (121)
44 3d22_A TRXH4, thioredoxin H-ty 64.7 11 0.00037 26.0 4.8 30 128-158 102-133 (139)
45 1r26_A Thioredoxin; redox-acti 64.4 11 0.00039 26.0 4.9 28 128-156 93-122 (125)
46 2voc_A Thioredoxin; electron t 64.2 7.8 0.00027 25.8 3.9 27 128-154 74-102 (112)
47 3zzx_A Thioredoxin; oxidoreduc 63.1 9.9 0.00034 25.8 4.3 25 128-153 76-102 (105)
48 1syr_A Thioredoxin; SGPP, stru 63.1 5.3 0.00018 26.6 2.8 27 128-155 82-110 (112)
49 2a4v_A Peroxiredoxin DOT5; yea 62.8 13 0.00044 26.3 5.1 37 127-164 120-158 (159)
50 1kng_A Thiol:disulfide interch 62.8 10 0.00035 26.2 4.5 33 127-159 120-154 (156)
51 2cte_A Vigilin; K homology typ 62.0 11 0.00037 25.7 4.3 30 134-165 59-88 (94)
52 1nsw_A Thioredoxin, TRX; therm 61.9 4.4 0.00015 26.4 2.2 27 128-154 74-102 (105)
53 2vlu_A Thioredoxin, thioredoxi 61.8 9.8 0.00034 25.4 4.1 28 128-156 90-119 (122)
54 2qsi_A Putative hydrogenase ex 60.1 13 0.00045 27.4 4.8 61 95-156 55-122 (137)
55 1faa_A Thioredoxin F; electron 59.7 13 0.00045 24.9 4.4 27 128-155 94-122 (124)
56 2i1u_A Thioredoxin, TRX, MPT46 59.7 1.9 6.6E-05 29.0 0.0 28 128-155 87-116 (121)
57 2pu9_C TRX-F, thioredoxin F-ty 59.7 14 0.00049 24.2 4.6 27 128-155 81-109 (111)
58 1oaz_A Thioredoxin 1; immune s 59.6 6.6 0.00023 27.1 2.9 27 128-154 92-120 (123)
59 2kuc_A Putative disulphide-iso 58.7 15 0.00053 24.7 4.7 28 128-155 89-119 (130)
60 2oe3_A Thioredoxin-3; electron 58.5 8 0.00027 26.2 3.1 25 128-153 86-112 (114)
61 2fwh_A Thiol:disulfide interch 56.2 5.2 0.00018 27.9 1.9 31 128-158 94-129 (134)
62 2b1k_A Thiol:disulfide interch 55.9 17 0.00057 25.7 4.7 35 127-161 128-164 (168)
63 1ygt_A Cytoplasmic dynein ligh 55.7 49 0.0017 23.0 7.2 81 35-132 24-107 (111)
64 3d6i_A Monothiol glutaredoxin- 55.5 21 0.00071 23.3 4.8 30 128-158 79-110 (112)
65 2ctm_A Vigilin; K homology typ 55.0 17 0.00059 24.8 4.4 38 125-164 46-88 (95)
66 2in3_A Hypothetical protein; D 54.5 16 0.00053 27.4 4.5 30 128-157 179-210 (216)
67 2xc2_A Thioredoxinn; oxidoredu 54.2 15 0.00052 24.4 4.0 27 128-155 88-116 (117)
68 3h93_A Thiol:disulfide interch 54.1 16 0.00056 26.8 4.5 29 133-161 158-188 (192)
69 1xfl_A Thioredoxin H1; AT3G510 53.7 19 0.00064 24.6 4.5 27 128-155 94-122 (124)
70 2l6c_A Thioredoxin; oxidoreduc 53.2 11 0.00039 25.0 3.1 28 128-155 75-104 (110)
71 2vim_A Thioredoxin, TRX; thior 53.1 22 0.00076 22.6 4.6 27 128-155 75-103 (104)
72 2rem_A Disulfide oxidoreductas 52.9 17 0.00059 26.5 4.4 28 131-159 159-186 (193)
73 2ggt_A SCO1 protein homolog, m 52.8 26 0.0009 24.3 5.2 33 124-156 126-160 (164)
74 2l57_A Uncharacterized protein 52.7 21 0.00072 24.0 4.5 28 128-155 85-115 (126)
75 2znm_A Thiol:disulfide interch 52.5 14 0.00047 27.2 3.8 32 131-162 154-185 (195)
76 3hz8_A Thiol:disulfide interch 52.0 20 0.00067 26.8 4.7 33 131-164 158-190 (193)
77 3uvt_A Thioredoxin domain-cont 51.8 18 0.00063 23.3 4.0 27 128-154 81-109 (111)
78 3die_A Thioredoxin, TRX; elect 51.6 12 0.0004 24.1 2.9 27 128-154 76-104 (106)
79 1x5d_A Protein disulfide-isome 51.5 22 0.00076 23.8 4.5 31 128-158 86-118 (133)
80 3emx_A Thioredoxin; structural 50.2 18 0.00062 25.0 4.0 30 128-157 95-126 (135)
81 3qou_A Protein YBBN; thioredox 49.8 13 0.00045 29.0 3.5 30 128-157 83-114 (287)
82 1zzo_A RV1677; thioredoxin fol 48.7 21 0.0007 23.7 3.9 29 128-156 104-134 (136)
83 1ti3_A Thioredoxin H, PTTRXH1; 48.4 25 0.00084 22.8 4.2 28 128-156 82-111 (113)
84 2axy_A Poly(RC)-binding protei 48.1 34 0.0012 21.9 4.8 33 127-161 36-72 (73)
85 1zma_A Bacterocin transport ac 47.6 10 0.00035 25.4 2.2 25 128-152 90-116 (118)
86 1xwb_A Thioredoxin; dimerizati 47.6 24 0.00081 22.5 4.0 26 128-154 77-104 (106)
87 2vm1_A Thioredoxin, thioredoxi 47.3 32 0.0011 22.4 4.7 28 128-156 84-113 (118)
88 2rli_A SCO2 protein homolog, m 47.2 27 0.00093 24.5 4.6 33 125-157 130-164 (171)
89 1nho_A Probable thioredoxin; b 46.9 22 0.00076 21.7 3.7 22 134-155 62-83 (85)
90 2l5l_A Thioredoxin; structural 46.7 21 0.00072 24.6 3.8 30 128-157 95-126 (136)
91 4dvc_A Thiol:disulfide interch 46.7 15 0.00052 26.3 3.2 26 131-156 154-181 (184)
92 1lu4_A Soluble secreted antige 46.4 18 0.00063 24.1 3.4 29 128-156 102-135 (136)
93 2fgx_A Putative thioredoxin; N 46.4 8 0.00027 27.2 1.5 25 128-152 82-106 (107)
94 1gh2_A Thioredoxin-like protei 45.8 24 0.00082 22.9 3.9 27 128-155 77-105 (107)
95 1fo5_A Thioredoxin; disulfide 45.5 14 0.00046 22.8 2.4 22 134-155 63-84 (85)
96 2b7k_A SCO1 protein; metalloch 43.7 22 0.00076 26.5 3.8 44 116-159 136-181 (200)
97 1x4m_A FAR upstream element bi 42.6 18 0.0006 24.5 2.8 24 137-162 64-87 (94)
98 3f3q_A Thioredoxin-1; His TAG, 42.3 38 0.0013 22.2 4.5 27 128-155 80-108 (109)
99 3kij_A Probable glutathione pe 42.3 31 0.0011 24.9 4.3 37 128-164 139-177 (180)
100 3dml_A Putative uncharacterize 42.3 50 0.0017 23.4 5.3 32 127-158 78-111 (116)
101 1xdx_A Tctex1 light chain prot 42.2 55 0.0019 22.9 5.5 83 35-133 27-111 (114)
102 2yj7_A LPBCA thioredoxin; oxid 48.3 5.3 0.00018 25.6 0.0 28 128-155 76-105 (106)
103 2p2r_A Poly(RC)-binding protei 41.9 36 0.0012 21.7 4.2 25 134-160 49-73 (76)
104 2ctk_A Vigilin; K homology typ 41.3 35 0.0012 23.6 4.2 37 126-164 47-87 (104)
105 1zzk_A Heterogeneous nuclear r 40.2 36 0.0012 22.2 4.0 26 135-162 52-77 (82)
106 3feu_A Putative lipoprotein; a 40.2 24 0.00083 26.2 3.5 25 132-156 157-183 (185)
107 2hh2_A KH-type splicing regula 40.1 27 0.00091 24.3 3.5 26 135-162 55-80 (107)
108 2dj1_A Protein disulfide-isome 39.9 36 0.0012 23.1 4.2 29 128-156 94-123 (140)
109 1qgv_A Spliceosomal protein U5 39.5 35 0.0012 24.1 4.1 20 139-158 102-122 (142)
110 4f9u_A CG32412; alpha/beta hyd 38.9 33 0.0011 27.6 4.4 34 57-90 31-74 (312)
111 1j5k_A Heterogeneous nuclear r 38.8 53 0.0018 21.7 4.7 27 134-162 58-84 (89)
112 2ctl_A Vigilin; K homology typ 38.6 47 0.0016 22.6 4.5 37 126-164 47-90 (97)
113 1x4n_A FAR upstream element bi 37.5 65 0.0022 21.4 5.1 28 135-164 60-87 (92)
114 3ul3_B Thioredoxin, thioredoxi 37.1 25 0.00085 23.9 2.9 26 128-153 99-126 (128)
115 2ctj_A Vigilin; K homology typ 36.4 32 0.0011 23.5 3.3 26 136-163 62-87 (95)
116 3dxb_A Thioredoxin N-terminall 35.6 48 0.0016 25.0 4.6 29 128-156 87-117 (222)
117 1mek_A Protein disulfide isome 35.3 24 0.00082 22.9 2.5 27 128-154 84-114 (120)
118 3u27_C Microcompartments prote 35.3 39 0.0013 27.1 4.1 28 134-161 83-111 (220)
119 1a8l_A Protein disulfide oxido 35.3 53 0.0018 24.3 4.8 28 128-155 195-224 (226)
120 1ilo_A Conserved hypothetical 35.1 26 0.00089 21.2 2.5 18 134-151 57-75 (77)
121 3c7m_A Thiol:disulfide interch 35.0 37 0.0013 24.6 3.7 25 132-156 167-193 (195)
122 3iij_A Coilin-interacting nucl 35.0 50 0.0017 23.6 4.4 33 134-166 146-178 (180)
123 3apq_A DNAJ homolog subfamily 34.8 31 0.0011 25.7 3.3 30 128-157 171-202 (210)
124 3lwa_A Secreted thiol-disulfid 34.3 41 0.0014 24.1 3.8 30 127-156 149-180 (183)
125 1sen_A Thioredoxin-like protei 33.7 34 0.0012 24.7 3.3 32 128-159 106-150 (164)
126 2l5o_A Putative thioredoxin; s 33.4 44 0.0015 22.8 3.8 29 129-157 111-141 (153)
127 2dbc_A PDCL2, unnamed protein 33.3 34 0.0011 23.8 3.1 28 128-155 83-119 (135)
128 2jvz_A KH type-splicing, FAR u 33.1 66 0.0023 23.1 4.9 28 134-163 135-162 (164)
129 2h30_A Thioredoxin, peptide me 32.8 17 0.00058 25.4 1.4 35 128-162 125-161 (164)
130 3tc8_A Leucine aminopeptidase; 32.8 52 0.0018 26.9 4.6 37 53-90 44-90 (309)
131 1ec6_A RNA-binding protein NOV 32.2 85 0.0029 20.5 4.9 27 134-162 50-76 (87)
132 3kh7_A Thiol:disulfide interch 31.6 72 0.0024 22.9 4.8 34 127-160 135-170 (176)
133 4evm_A Thioredoxin family prot 30.5 55 0.0019 21.3 3.8 28 128-155 107-137 (138)
134 3gux_A Putative Zn-dependent e 30.4 56 0.0019 26.9 4.4 37 53-90 46-92 (314)
135 4fai_A CG5976, isoform B; alph 30.2 55 0.0019 26.9 4.4 34 57-90 58-101 (330)
136 3h79_A Thioredoxin-like protei 30.1 53 0.0018 22.0 3.7 26 129-154 96-125 (127)
137 1x5e_A Thioredoxin domain cont 30.0 40 0.0014 22.5 3.0 27 129-155 81-108 (126)
138 2b5x_A YKUV protein, TRXY; thi 30.0 75 0.0026 21.1 4.5 29 128-156 113-144 (148)
139 3ha9_A Uncharacterized thiored 29.9 52 0.0018 22.9 3.7 28 129-156 135-163 (165)
140 3ia1_A THIO-disulfide isomeras 29.7 79 0.0027 21.5 4.6 29 127-155 112-142 (154)
141 2jzx_A Poly(RC)-binding protei 29.5 53 0.0018 23.7 3.7 26 134-161 134-159 (160)
142 3gl5_A Putative DSBA oxidoredu 29.3 57 0.002 25.4 4.2 25 133-157 189-213 (239)
143 2hh3_A KH-type splicing regula 29.2 1E+02 0.0034 21.3 5.0 26 136-163 57-82 (106)
144 3p57_A Myocyte-specific enhanc 29.1 1.1E+02 0.0036 21.1 5.0 29 124-152 39-68 (90)
145 3rjs_A Dynein light chain moto 28.9 40 0.0014 22.8 2.8 28 104-135 62-89 (89)
146 3i96_A Ethanolamine utilizatio 28.6 72 0.0025 23.1 4.3 26 134-161 74-99 (119)
147 1dtj_A RNA-binding neurooncolo 28.2 60 0.0021 20.5 3.5 25 134-160 50-74 (76)
148 3ph9_A Anterior gradient prote 28.0 27 0.00093 25.6 1.9 38 127-164 102-149 (151)
149 3iwl_A Copper transport protei 27.8 37 0.0013 20.5 2.3 24 131-154 34-57 (68)
150 3io0_A ETUB protein; tamdem re 27.8 70 0.0024 25.8 4.4 29 134-162 82-110 (230)
151 3kgw_A Alanine-glyoxylate amin 27.7 2.2E+02 0.0075 22.2 8.2 26 141-166 366-392 (393)
152 3tqm_A Ribosome-associated fac 27.3 61 0.0021 21.7 3.5 34 126-160 49-82 (96)
153 4fuu_A Leucine aminopeptidase; 26.9 69 0.0024 25.8 4.4 34 57-90 47-90 (309)
154 3it4_B Arginine biosynthesis b 26.7 39 0.0013 26.9 2.6 20 47-66 90-109 (205)
155 2wz9_A Glutaredoxin-3; protein 26.3 90 0.0031 21.8 4.5 28 128-156 88-117 (153)
156 3f9u_A Putative exported cytoc 25.9 57 0.002 23.1 3.3 31 128-158 133-167 (172)
157 2ju5_A Thioredoxin disulfide i 25.6 1E+02 0.0036 21.6 4.7 29 128-156 119-151 (154)
158 3gha_A Disulfide bond formatio 25.2 52 0.0018 24.8 3.1 27 131-158 167-193 (202)
159 2vup_A Glutathione peroxidase- 24.7 96 0.0033 22.4 4.5 30 127-156 153-184 (190)
160 4fay_A Microcompartments prote 24.7 85 0.0029 25.8 4.4 29 134-162 110-138 (258)
161 4ds1_A Dynein light chain 1, c 24.4 44 0.0015 23.1 2.3 26 106-135 72-97 (97)
162 2ywm_A Glutaredoxin-like prote 24.4 86 0.0029 23.3 4.2 29 134-162 196-225 (229)
163 3hxs_A Thioredoxin, TRXP; elec 23.9 80 0.0028 21.3 3.7 28 129-156 109-138 (141)
164 2ivy_A Hypothetical protein SS 23.8 51 0.0018 22.8 2.6 59 59-124 15-77 (101)
165 1we8_A Tudor and KH domain con 23.4 71 0.0024 21.8 3.3 26 134-161 61-86 (104)
166 3aps_A DNAJ homolog subfamily 23.3 29 0.001 23.0 1.2 20 141-160 97-116 (122)
167 1vra_B Arginine biosynthesis b 22.8 41 0.0014 26.9 2.1 20 47-66 96-115 (215)
168 1vig_A Vigilin; RNA-binding pr 22.7 77 0.0026 20.0 3.1 31 126-158 35-69 (71)
169 3gyk_A 27KDA outer membrane pr 22.5 89 0.003 22.1 3.9 22 134-156 151-172 (175)
170 2v4i_B Glutamate N-acetyltrans 22.3 43 0.0015 26.8 2.1 20 47-66 89-108 (213)
171 3or5_A Thiol:disulfide interch 22.2 1.2E+02 0.0042 20.6 4.5 31 127-157 119-151 (165)
172 3pb6_X Glutaminyl-peptide cycl 22.1 1.1E+02 0.0036 25.5 4.7 37 53-90 57-104 (330)
173 2hls_A Protein disulfide oxido 22.1 1.1E+02 0.0038 23.5 4.6 23 134-156 203-225 (243)
174 2opa_A Probable tautomerase YW 21.9 1.3E+02 0.0044 17.6 5.4 29 49-77 8-37 (61)
175 3raz_A Thioredoxin-related pro 21.8 98 0.0034 21.1 3.9 30 127-156 108-139 (151)
176 2v1m_A Glutathione peroxidase; 21.7 87 0.003 21.6 3.6 30 127-156 135-166 (169)
177 1wvn_A Poly(RC)-binding protei 21.7 73 0.0025 20.6 2.9 26 134-161 50-75 (82)
178 3igm_B PF14_0633 protein; AP2 21.7 42 0.0014 22.7 1.7 22 53-74 43-64 (77)
179 2ywq_A Protein Y, ribosomal su 21.5 76 0.0026 21.5 3.1 34 126-160 55-88 (105)
180 2f9s_A Thiol-disulfide oxidore 21.4 1.4E+02 0.0049 20.1 4.7 30 128-157 107-138 (151)
181 1xzo_A BSSCO, hypothetical pro 21.1 95 0.0032 21.6 3.7 29 127-155 138-170 (174)
182 3fk8_A Disulphide isomerase; A 21.1 1.4E+02 0.0049 19.8 4.6 28 128-155 94-131 (133)
183 2dj0_A Thioredoxin-related tra 21.1 8.5 0.00029 26.7 -2.0 31 128-158 90-122 (137)
184 3eyt_A Uncharacterized protein 21.0 1.6E+02 0.0055 19.9 4.9 30 127-156 120-151 (158)
185 1eej_A Thiol:disulfide interch 20.9 1.3E+02 0.0045 22.5 4.7 28 131-159 186-213 (216)
186 1yo3_A Dynein light chain 1; s 20.9 91 0.0031 21.7 3.4 28 104-135 75-102 (102)
187 3krm_A Insulin-like growth fac 20.5 1.5E+02 0.0051 21.2 4.8 24 137-162 51-74 (163)
188 2anr_A Neuro-oncological ventr 20.4 1.2E+02 0.004 22.2 4.2 25 135-161 151-175 (178)
189 2f8a_A Glutathione peroxidase 20.4 72 0.0025 24.0 3.1 30 127-156 175-206 (208)
190 2hdi_B Colicin-IA; outer membr 20.2 59 0.002 22.7 2.2 21 109-135 18-38 (113)
191 2f51_A Thioredoxin; electron t 20.0 71 0.0024 21.3 2.7 29 128-157 79-113 (118)
No 1
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=8.7e-59 Score=371.23 Aligned_cols=155 Identities=80% Similarity=1.259 Sum_probs=151.7
Q ss_pred cCCeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHH
Q 031013 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYA 65 (167)
Q Consensus 10 ~~~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~ 65 (167)
+++.|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|+++++
T Consensus 1 ~~~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~ 80 (180)
T 1ytb_A 1 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 80 (180)
T ss_dssp CCCCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCH
Q 031013 66 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145 (167)
Q Consensus 66 ~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~ 145 (167)
++|+++|+++++.+|+|||||||+|++++|||+++|..++++++||||+||||+||+.+|+++++||+||||+|||||++
T Consensus 81 ~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~ 160 (180)
T 1ytb_A 81 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR 160 (180)
T ss_dssp HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 031013 146 DETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 146 e~~~~a~~~i~~~L~~~r~ 164 (167)
+|+++|++.|+|+|.+||+
T Consensus 161 ~~~~~a~~~i~p~L~~~~~ 179 (180)
T 1ytb_A 161 EEIYQAFEAIYPVLSEFRK 179 (180)
T ss_dssp HHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999997
No 2
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=1.8e-58 Score=378.27 Aligned_cols=156 Identities=72% Similarity=1.180 Sum_probs=151.9
Q ss_pred cCCeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHH
Q 031013 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYA 65 (167)
Q Consensus 10 ~~~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~ 65 (167)
+|+.|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|+++++
T Consensus 39 ~~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~ 118 (218)
T 3eik_A 39 SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYA 118 (218)
T ss_dssp -CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCH
Q 031013 66 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145 (167)
Q Consensus 66 ~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~ 145 (167)
++|+++|+++++.+|+|+|||||||++|+|||++||..++.+++||||+||||+||+.+|+++++||+||||+|||||++
T Consensus 119 ~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~ 198 (218)
T 3eik_A 119 KIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVR 198 (218)
T ss_dssp HHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 031013 146 DETYTAFENIYPVLTEFRKV 165 (167)
Q Consensus 146 e~~~~a~~~i~~~L~~~r~~ 165 (167)
+|+++|++.|+|+|.+|||.
T Consensus 199 ~d~~~A~~~I~p~L~~frk~ 218 (218)
T 3eik_A 199 DDIYQAFNNIYPVLIQHRKA 218 (218)
T ss_dssp HHHHHHHHHHHHHHHHTBC-
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999984
No 3
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=1.6e-56 Score=360.32 Aligned_cols=152 Identities=36% Similarity=0.643 Sum_probs=143.3
Q ss_pred CeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHHHH
Q 031013 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYARI 67 (167)
Q Consensus 12 ~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~~~ 67 (167)
..|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|+++++++
T Consensus 11 ~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~ 90 (188)
T 2z8u_A 11 PEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKE 90 (188)
T ss_dssp CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999 999999999999999999999
Q ss_pred HHhcCCC-CcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHH
Q 031013 68 IQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRD 146 (167)
Q Consensus 68 l~~lg~~-~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e 146 (167)
|+++|++ .++.+|+|+|||||+|++++|||++|+..+ ++++||||+||||+||+.+|+++++||+||||+||||||++
T Consensus 91 L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~ 169 (188)
T 2z8u_A 91 LKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEE 169 (188)
T ss_dssp HHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHS-TTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHH
T ss_pred HHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhC-cCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence 9999998 688999999999999999999999999986 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 031013 147 ETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 147 ~~~~a~~~i~~~L~~~r~ 164 (167)
|+++|+++++|+|+++++
T Consensus 170 ~~~~A~~~i~~~L~~~~~ 187 (188)
T 2z8u_A 170 DAKRALKKILDTIKEVQE 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999986
No 4
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=2.4e-56 Score=370.51 Aligned_cols=156 Identities=79% Similarity=1.254 Sum_probs=152.1
Q ss_pred cCCeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHH
Q 031013 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYA 65 (167)
Q Consensus 10 ~~~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~ 65 (167)
.++.|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|+++++
T Consensus 61 ~~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~ 140 (240)
T 1rm1_A 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 140 (240)
T ss_dssp CCCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCH
Q 031013 66 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145 (167)
Q Consensus 66 ~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~ 145 (167)
++|+++|+++++.+|+|||||||||++|+|||++|+..++++++||||+||||+||+.+|+++++||+||||+|||+|++
T Consensus 141 ~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~ 220 (240)
T 1rm1_A 141 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR 220 (240)
T ss_dssp HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 031013 146 DETYTAFENIYPVLTEFRKV 165 (167)
Q Consensus 146 e~~~~a~~~i~~~L~~~r~~ 165 (167)
+|+++|++.|+|+|.+||+.
T Consensus 221 ~~~~~Ai~~i~p~L~~~~~~ 240 (240)
T 1rm1_A 221 EEIYQAFEAIYPVLSEFRKM 240 (240)
T ss_dssp HHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999974
No 5
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=1.3e-55 Score=357.40 Aligned_cols=155 Identities=43% Similarity=0.658 Sum_probs=150.0
Q ss_pred cCCeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHH
Q 031013 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYA 65 (167)
Q Consensus 10 ~~~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~ 65 (167)
.++.|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|+++++
T Consensus 9 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~ 88 (198)
T 1mp9_A 9 YKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRII 88 (198)
T ss_dssp CCCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhcCCC-CcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCC
Q 031013 66 RIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 144 (167)
Q Consensus 66 ~~l~~lg~~-~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks 144 (167)
++|+++|++ .++.+|+|+|||||++++++|||++++..+ ++++||||+||||+||+.+|+++++||+||||+||||||
T Consensus 89 ~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks 167 (198)
T 1mp9_A 89 KTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-ENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKR 167 (198)
T ss_dssp HHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHS-SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESS
T ss_pred HHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhc-CCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCC
Confidence 999999998 688999999999999999999999999986 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 031013 145 RDETYTAFENIYPVLTEFRKV 165 (167)
Q Consensus 145 ~e~~~~a~~~i~~~L~~~r~~ 165 (167)
++++++|+++++|+|++++..
T Consensus 168 ~~~~~~A~~~i~~~L~~~~~~ 188 (198)
T 1mp9_A 168 EDEVHKAVKKIFDKLVELDCV 188 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999864
No 6
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=1.6e-55 Score=352.77 Aligned_cols=151 Identities=38% Similarity=0.592 Sum_probs=146.7
Q ss_pred CCeeeEEEEEEEEEeCCccchHhHHhhCCCceecCC------------------------ceeccCCHHHHHHHHHHHHH
Q 031013 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPK------------------------VCTGAKSEQQSKLAARKYAR 66 (167)
Q Consensus 11 ~~~p~I~NVV~s~~l~~~ldL~~ia~~~~n~eY~P~------------------------v~tGakS~~~a~~a~~k~~~ 66 (167)
...|+|+|||||++++|+|||++||..++|+||||+ +||||+|+++++.|++++++
T Consensus 6 ~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~ 85 (182)
T 1ais_A 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQ 85 (182)
T ss_dssp TCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHhcCCC-CcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCH
Q 031013 67 IIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 145 (167)
Q Consensus 67 ~l~~lg~~-~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~ 145 (167)
+|+++|++ .++.+|+|+|||||++++++|||++|+..+ ++++||||+||||+||+.+|+++++||+||||+||||||+
T Consensus 86 ~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~ 164 (182)
T 1ais_A 86 KLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSE 164 (182)
T ss_dssp HHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHS-TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCH
Confidence 99999998 688999999999999999999999999987 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031013 146 DETYTAFENIYPVLTEF 162 (167)
Q Consensus 146 e~~~~a~~~i~~~L~~~ 162 (167)
+|+++|+++++|+|+++
T Consensus 165 ~~~~~a~~~i~~~L~~~ 181 (182)
T 1ais_A 165 ADAWEAVRKLLRELDKY 181 (182)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=1.7e-33 Score=233.45 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=84.0
Q ss_pred ceeccCCHHHHHHHHHHHHHHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCe
Q 031013 47 VCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPK 126 (167)
Q Consensus 47 v~tGakS~~~a~~a~~k~~~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk 126 (167)
.-.|+.|.+++..+++++++.++++|++....+++|+|||||++++++|||++|+..+ ++++||||+||||+||+.+|+
T Consensus 32 sGk~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~-~n~eYePe~Fpgli~Rl~~Pk 110 (240)
T 1rm1_A 32 DGTKPATTFQSEEDIKRAAPESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHA-RNAEYNPKRFAAVIMRIREPK 110 (240)
T ss_dssp -----------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHB-TTEEECTTTCSEEEEEEETTE
T ss_pred CCcceecccccHHHHHHHHHHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhC-CCcEEcCcccceEEEEeCCCc
Confidence 3446677777777788888999999998777789999999999999999999999987 689999999999999999999
Q ss_pred EEEEEecCceEEEEccCCHHHHHHHHHHHHHHHHhhh
Q 031013 127 IVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 163 (167)
Q Consensus 127 ~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~L~~~r 163 (167)
++++||+||||+||||||+++++.|+++++++|+++.
T Consensus 111 ~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg 147 (240)
T 1rm1_A 111 TTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIG 147 (240)
T ss_dssp EEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999875
No 8
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.96 E-value=5.9e-30 Score=204.38 Aligned_cols=84 Identities=31% Similarity=0.507 Sum_probs=81.0
Q ss_pred ceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHHHH
Q 031013 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 79 ~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~ 158 (167)
.++|+|||||++++++|||+++|..+ ++++||||+||||+||+.+|+++++||+||||+||||||+++++.|+++++++
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~-~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHA-RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHS-SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999887 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 031013 159 LTEFR 163 (167)
Q Consensus 159 L~~~r 163 (167)
|+++-
T Consensus 83 L~~lg 87 (180)
T 1ytb_A 83 IQKIG 87 (180)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 99874
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.95 E-value=3.9e-28 Score=194.07 Aligned_cols=85 Identities=38% Similarity=0.570 Sum_probs=81.4
Q ss_pred ccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHH
Q 031013 77 FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156 (167)
Q Consensus 77 ~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~ 156 (167)
..+++|+|||||++++++|||+++|..+ ++++||||+|||++||+.+|+++++||+||||+||||||+++++.|++++.
T Consensus 6 ~~~~~I~NvVas~~l~~~ldL~~ia~~~-~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~ 84 (182)
T 1ais_A 6 KVKLRIENIVASVDLFAQLDLEKVLDLC-PNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLA 84 (182)
T ss_dssp TCEEEEEEEEEEEECCSCCCHHHHTTTS-TTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCeeCHHHHHhhC-CCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999987 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 031013 157 PVLTEF 162 (167)
Q Consensus 157 ~~L~~~ 162 (167)
++|+++
T Consensus 85 ~~L~~l 90 (182)
T 1ais_A 85 QKLKSI 90 (182)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999875
No 10
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.95 E-value=5.6e-28 Score=197.77 Aligned_cols=83 Identities=30% Similarity=0.525 Sum_probs=80.2
Q ss_pred ceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHHHH
Q 031013 79 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 79 ~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~ 158 (167)
.++|+|||||++++++|||+++|..+ ++++||||+||||+||+.+|+++++||+||||+||||||+++++.|++++..+
T Consensus 42 ~~~I~NIVas~~l~~~ldL~~ia~~~-~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~ 120 (218)
T 3eik_A 42 IPTLQNVVATVNLSCKLDLKNIALRA-RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKI 120 (218)
T ss_dssp SCEEEEEEEEEECSSCCCHHHHHHHC-TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEECCCccCHHHHHhhC-CCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999987 69999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 031013 159 LTEF 162 (167)
Q Consensus 159 L~~~ 162 (167)
|+++
T Consensus 121 L~~l 124 (218)
T 3eik_A 121 IHKL 124 (218)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9875
No 11
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.95 E-value=1.5e-27 Score=192.90 Aligned_cols=85 Identities=39% Similarity=0.633 Sum_probs=81.7
Q ss_pred ccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHH
Q 031013 77 FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156 (167)
Q Consensus 77 ~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~ 156 (167)
..+++|+|||||++++++|||++||..+ ++++|||++|||++||+.+|+++++||+||||+||||||+++++.|++++.
T Consensus 10 ~~~~~I~NvVas~~l~~~ldL~~la~~~-~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~ 88 (198)
T 1mp9_A 10 KAVVNIENIVATVTLDQTLDLYAMERSV-PNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRII 88 (198)
T ss_dssp CCEEEEEEEEEEEECCSCCCHHHHHHHS-TTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCcccHHHHHhhC-CCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHH
Confidence 4579999999999999999999999988 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 031013 157 PVLTEF 162 (167)
Q Consensus 157 ~~L~~~ 162 (167)
++|+++
T Consensus 89 ~~L~~l 94 (198)
T 1mp9_A 89 KTLKKY 94 (198)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999875
No 12
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.95 E-value=1.5e-27 Score=191.57 Aligned_cols=85 Identities=41% Similarity=0.581 Sum_probs=74.3
Q ss_pred ccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHH
Q 031013 77 FKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIY 156 (167)
Q Consensus 77 ~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~ 156 (167)
..+++|+|||||++++++|||++||..+ ++++||||+|||++||+.+|+++++||+||||+||||||+++++.|.+++.
T Consensus 10 ~~~~~i~NvVas~~l~~~ldL~~ia~~~-~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~ 88 (188)
T 2z8u_A 10 EPEIKIVNVVVSTKIGDNIDLEEVAMIL-ENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKII 88 (188)
T ss_dssp -CCCEEEEEEEEEECCSSCCHHHHHHHS-SCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeCCeeCHHHHHhhC-CCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999988 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 031013 157 PVLTEF 162 (167)
Q Consensus 157 ~~L~~~ 162 (167)
++|+++
T Consensus 89 ~~L~~l 94 (188)
T 2z8u_A 89 KELKDA 94 (188)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999886
No 13
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=93.82 E-value=0.025 Score=46.80 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=33.0
Q ss_pred cCCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHH
Q 031013 112 PELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYT 150 (167)
Q Consensus 112 PE~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~ 150 (167)
+..=|+..|+...+.+++.+|.|||+++.|...++.+..
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~~ 63 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLKE 63 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHHH
Confidence 455689999999999999999999999999877654443
No 14
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=93.65 E-value=0.065 Score=45.32 Aligned_cols=36 Identities=28% Similarity=0.626 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCeEEEEEecCceEEEEccCCHHHH
Q 031013 113 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDET 148 (167)
Q Consensus 113 E~fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~ 148 (167)
..-|+..|+...+.+++.+|.|||+++.|...++.+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 446899999999999999999999999998876443
No 15
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=81.72 E-value=2.5 Score=29.75 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCeEEEEEecCceEEEEccCCHHHHHHHHHHHHHHHHhhhhh
Q 031013 115 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165 (167)
Q Consensus 115 fPglv~R~~~pk~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~L~~~r~~ 165 (167)
||++...+.+ .++.|+|+|. .+++..|...|..++.+++..
T Consensus 56 ~~~v~I~fp~--------~~~~ItI~G~--~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 56 MPKVHIEFTE--------GEDKITLEGP--TEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp CSSSEEEECS--------SSCEEEEEEC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeCC--------CCCEEEEECC--HHHHHHHHHHHHHHHHHHHhh
Confidence 5666555544 5889999999 678999999999999988764
No 16
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=77.68 E-value=2.3 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ .+|..+.+++.+.+++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 46678899986 789999998888877654
No 17
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=77.53 E-value=3.6 Score=28.07 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=25.2
Q ss_pred ceeccCCHHHHHHHHHHHHHHHHhcCCC
Q 031013 47 VCTGAKSEQQSKLAARKYARIIQKLGFP 74 (167)
Q Consensus 47 v~tGakS~~~a~~a~~k~~~~l~~lg~~ 74 (167)
+...|.+.++|+.-.+-++|.|+++||.
T Consensus 52 itisaendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 52 ITISAENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEEEecChHHHHHHHHHHHHHHHHhCCC
Confidence 4457889999999999999999999996
No 18
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=75.65 E-value=4.7 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 45666888885 689999998888877653
No 19
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=75.06 E-value=4.5 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ ..|..+.+++.+.++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 46678899985 68999998888888765
No 20
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=75.05 E-value=5.4 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=23.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|..|+.+ .+|..+.+++.+.+++++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 45677888875 789999999988887764
No 21
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=74.55 E-value=3.7 Score=26.56 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=22.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ .+|..+.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 46677889875 68999999888887764
No 22
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=74.53 E-value=7.1 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.9
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHHHHHhh
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~L~~~ 162 (167)
|+++|.+|+++ ..|..+.+++.+.++++++.-.+.
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~ 117 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEEC 117 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcccccC
Confidence 56778899884 789999999999999888764443
No 23
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=73.87 E-value=4.2 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|..+.+++.+.++++.
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 45666889886 679999998888887654
No 24
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=73.62 E-value=4.4 Score=29.82 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.4
Q ss_pred eEEEEccCCHHHHHHHHHHHHHHHHhhhhhcC
Q 031013 136 KIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 167 (167)
Q Consensus 136 KvvitGaks~e~~~~a~~~i~~~L~~~r~~~~ 167 (167)
.|.|+| +.+.+..|.+.|..++.+.+..+|
T Consensus 133 ~v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 133 IVKIIG--HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp EEEEEE--CHHHHHHHHHHHHHHHHHHTC---
T ss_pred EEEEEe--CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999 678899999999999999988765
No 25
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=73.55 E-value=5.2 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=22.5
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ .+|..+.+++.+.+++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 45566889886 789999999888887653
No 26
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=72.97 E-value=5.3 Score=25.48 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=22.7
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 56677889884 679999988888887664
No 27
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=71.84 E-value=6.3 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 56677889885 679989988888877653
No 28
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=71.59 E-value=5 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ .+|..+.+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 45667889887 6799999888877765
No 29
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=71.36 E-value=4.9 Score=26.05 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=22.5
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 45667888876 679999999988887653
No 30
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=70.44 E-value=5.2 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=22.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
|+.+|..|+++ +.|..+.+++.+.+++++.
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 67788999986 7899999988888877653
No 31
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=69.73 E-value=7.4 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|. +.+++.+.+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 56778889884 6788 8888888877654
No 32
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=69.62 E-value=3.6 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ .+|..+.+++.+.+++++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 45666888876 789999988888876654
No 33
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=69.43 E-value=9 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=26.8
Q ss_pred EEEEecCceEE-----------EEc-cCCHHHHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV-----------ITG-AKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 128 t~lIF~SGKvv-----------itG-aks~e~~~~a~~~i~~~L~ 160 (167)
|+.+|..|+++ +.| ..+.+++.+.++.++...+
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 34488888888 899 8999999999999876643
No 34
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=68.35 E-value=7.9 Score=26.91 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ .+|..+.+++.+.+++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 56777899886 789999888888877654
No 35
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=67.45 E-value=6.4 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|..|+++ .+|. +.+++.+.++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 56777889886 7788 888888887764
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=66.10 E-value=8.3 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.0
Q ss_pred eEEEEEecCce--------EEEEccCCHHHHHHHHHHHHHHHH
Q 031013 126 KIVLLIFVSGK--------IVITGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 126 k~t~lIF~SGK--------vvitGaks~e~~~~a~~~i~~~L~ 160 (167)
.+.+.|-.+|. |.|+| +.+.+..|.+.|..++.
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 56677777887 99999 88899999998887764
No 37
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=65.85 E-value=7.2 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.0
Q ss_pred eEEEEEecCceEE-----------EEccCC-HHHHHHHHHHHHHHH
Q 031013 126 KIVLLIFVSGKIV-----------ITGAKV-RDETYTAFENIYPVL 159 (167)
Q Consensus 126 k~t~lIF~SGKvv-----------itGaks-~e~~~~a~~~i~~~L 159 (167)
-.|+++|..|+.+ +.|+.+ .+++.+.++.+++--
T Consensus 96 iPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 96 PVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp SEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 3688899999997 789977 888999998887653
No 38
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=65.83 E-value=8.9 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=38.2
Q ss_pred cchHhHHHHcCC----CeeeccCCCCeEE--EEEcCCeEEEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 95 IRLEGLAYSHGA----FSSYEPELFPGLI--YRMKQPKIVLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 95 I~L~~la~~~~~----~~~YePE~fPglv--~R~~~pk~t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
--|++|+.++.. .+.-|.+..|.+- |++.. --|+++|..|+++ +.|+.+.+++.+.++.++
T Consensus 56 Pvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~s-IPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 56 VMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFR-FPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp HHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCS-SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCcc-CCEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 346666665531 1233333334332 33332 3489999999995 779999998888887654
No 39
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=65.20 E-value=8.6 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=24.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
++++|.+|+++ ..|..+.+++.+.+++++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 56778899887 7899999998888877654
No 40
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=65.16 E-value=7 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++++|..|+++ ..|. +.+++.+.++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 57788999886 6788 888888888764
No 41
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=64.92 E-value=9.6 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=23.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
|+.+|.+|+++ ..|..+.+++.+.++..+
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 56778899987 889999988888777654
No 42
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=64.91 E-value=5 Score=26.44 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=22.9
Q ss_pred EEEEecCceEEE--EccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIVI--TGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvvi--tGaks~e~~~~a~~~i 155 (167)
|+++|.+|+++- .|..+.+++.+.++++
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 677889999874 7999999988887654
No 43
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=64.70 E-value=6.3 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ ..|. +.+++.+.++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 56777889885 6888 888888877664
No 44
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=64.65 E-value=11 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=22.9
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~ 158 (167)
++.+|.+|+++ ..|. +.+++.+.++.+.+.
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 56677899986 6788 788888888777653
No 45
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=64.41 E-value=11 Score=26.03 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
|+++|..|+++ .+| .+.+++.+.+++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 46778889885 678 57778877776654
No 46
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=64.20 E-value=7.8 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.8
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELVNK 102 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHH
Confidence 45667899987 7899999887776653
No 47
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=63.14 E-value=9.9 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFE 153 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~ 153 (167)
|+++|..|+.+ ++|+ +.+++.+.++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHH
Confidence 67788999985 6785 6766666654
No 48
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=63.10 E-value=5.3 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ .+|. +.+++.+.++++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 46677888874 6798 888888777653
No 49
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=62.80 E-value=13 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.2
Q ss_pred EEEEEecCceEEEE--ccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 127 IVLLIFVSGKIVIT--GAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 127 ~t~lIF~SGKvvit--Gaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
.+++| .+|+|+-. |....++.++.++.+...|.+++.
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~~ 158 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhhc
Confidence 68889 99999854 556667788888888888887753
No 50
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=62.78 E-value=10 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.7
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPVL 159 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~L 159 (167)
.+++|..+|+++ ..|..+.+++.+.++.++..+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788999996 678889999998888876654
No 51
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=61.98 E-value=11 Score=25.66 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.9
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhhhhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEFRKV 165 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~r~~ 165 (167)
+|.|.|+|. .+.+..|.+.|..++.+..+.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhccccc
Confidence 689999997 789999999999998877653
No 52
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=61.88 E-value=4.4 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ ..|..+.+++.+.+++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 45566888875 6899998888777654
No 53
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=61.85 E-value=9.8 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ .+|.. .+++.+.++++.
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 56778899985 78988 888888776654
No 54
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=60.14 E-value=13 Score=27.38 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=40.7
Q ss_pred cchHhHHHHcCC---CeeeccCCCCeE--EEEEcCCeEEEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 95 IRLEGLAYSHGA---FSSYEPELFPGL--IYRMKQPKIVLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 95 I~L~~la~~~~~---~~~YePE~fPgl--v~R~~~pk~t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
-=|++|+.++.. .+.-|-+..|.+ .|++.. --|+++|..|+++ +.|+.+.+++.+.++.++
T Consensus 55 Pvleela~e~~~~v~~~KVdvDe~~~la~~ygV~s-iPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 55 VVLPELINAFPGRLVAAEVAAEAERGLMARFGVAV-CPSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp HHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCS-SSEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCcc-CCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 356777776631 234444444444 233332 3589999999997 669999999998888765
No 55
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=59.72 E-value=13 Score=24.94 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
|+.+|..|+++ .+|.. .+++.+.++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 47788999986 67876 77777776654
No 56
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=59.72 E-value=1.9 Score=28.98 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ .+|..+.+++.+.++++
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence 46677888886 67999988887776544
No 57
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=59.67 E-value=14 Score=24.20 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
|+++|..|+++ ..|.. .+++.+.++++
T Consensus 81 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 47788999985 67875 77777777654
No 58
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=59.58 E-value=6.6 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ ..|..+.+++.+.+++
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 34556889886 8899999888877654
No 59
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.75 E-value=15 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEEe-cCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF-~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+| .+|+++ .+|..+.+++.+.+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 45666 789886 56999988887777654
No 60
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=58.51 E-value=8 Score=26.18 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFE 153 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~ 153 (167)
++.+|.+|+++ ..|.. .+++.+.++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 46678899987 78988 877777665
No 61
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=56.25 E-value=5.2 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=24.0
Q ss_pred EEEEe-cCceEE----EEccCCHHHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV----ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF-~SGKvv----itGaks~e~~~~a~~~i~~~ 158 (167)
++.+| .+|+++ ..|..+.+++.+.++.+-|.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~ 129 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC---
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCcc
Confidence 56677 899996 89999999999888876654
No 62
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=55.92 E-value=17 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=28.3
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHHHHHHh
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~L~~ 161 (167)
.+++|..+|+++ ..|..+.+++.+.++.++..+.+
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 164 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 578899999997 56888999999988887766543
No 63
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=55.68 E-value=49 Score=23.03 Aligned_cols=81 Identities=7% Similarity=0.062 Sum_probs=46.4
Q ss_pred HhhCCCceecCCceeccCCHHHHHHHHHHHHHHHHhcCCCCcccceEE-EEEEEEEecCCccchHhHHHHcCCCeeeccC
Q 031013 35 ALQARNAEYNPKVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI-QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 113 (167)
Q Consensus 35 a~~~~n~eY~P~v~tGakS~~~a~~a~~k~~~~l~~lg~~~~~~~~~I-~NIvas~~l~~~I~L~~la~~~~~~~~YePE 113 (167)
...+.+.+|+|+-+ .+-++.-++.+.+.|+++|++ ||+ ++++-.=.-+..+ . ....+-+||+
T Consensus 24 ~~~L~~~~Y~~~~~-----~~~~~~i~~~i~~~lk~l~~~-----YK~iV~v~I~q~~gqG~-----~--~as~c~WD~~ 86 (111)
T 1ygt_A 24 ETTIGGNAYQHDKV-----NNWTGQVVENCLTVLTKEQKP-----YKYIVTAMIMQKNGAGL-----H--TASSCYWNND 86 (111)
T ss_dssp HHHHTTCCCCHHHH-----HHHHHHHHHHHHHHHHTTCCS-----EEEEEEEEEEECSSCCC-----C--CCCCCCSCTT
T ss_pred HHhhCCCCcCHHHH-----HHHHHHHHHHHHHHHHhhCCC-----ceEEEEEEEEEcCCCce-----e--eeeeeEEcCC
Confidence 44567788887532 444566777888888888763 332 2222222222222 1 2246889998
Q ss_pred CCCeEEEEEcCCe--EEEEEe
Q 031013 114 LFPGLIYRMKQPK--IVLLIF 132 (167)
Q Consensus 114 ~fPglv~R~~~pk--~t~lIF 132 (167)
.=..+.++..++. +.+.||
T Consensus 87 ~D~~~s~~~~n~sl~~v~tVf 107 (111)
T 1ygt_A 87 TDGSCTVRWENKTMYCIVSVF 107 (111)
T ss_dssp TCEEEEEEEECSSEEEEEEEE
T ss_pred CCCeEEEEEECCCEEEEEEEE
Confidence 6566677776654 444555
No 64
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=55.55 E-value=21 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~ 158 (167)
++.+|..|+++ .+|.. .+++.+.++++.+-
T Consensus 79 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 79 YFIIIHKGTILKELSGAD-PKEYVSLLEDCKNS 110 (112)
T ss_dssp EEEEEETTEEEEEECSCC-HHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEecCCC-HHHHHHHHHHHHhh
Confidence 45567888875 56774 45677777766543
No 65
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.00 E-value=17 Score=24.84 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.8
Q ss_pred CeEEEEEecCc-----eEEEEccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 125 PKIVLLIFVSG-----KIVITGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 125 pk~t~lIF~SG-----KvvitGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
..+.+-|...| .|.|+|. .+.++.|.+.|..++.++..
T Consensus 46 tg~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 46 FKVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp HTCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHHHT
T ss_pred HCCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHHHH
Confidence 35666677777 8999997 47899999999988877653
No 66
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=54.52 E-value=16 Score=27.35 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=24.8
Q ss_pred EEEEecCceE--EEEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKI--VITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKv--vitGaks~e~~~~a~~~i~~ 157 (167)
++.||.+|+. .+.|+.+.+++.++++.+..
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 4667779998 78999999999999887653
No 67
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=54.17 E-value=15 Score=24.40 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=19.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ ..| .+.+++.+.++++
T Consensus 88 t~~~~~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 46778889885 668 4777777777654
No 68
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=54.14 E-value=16 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.3
Q ss_pred cCceEEEE--ccCCHHHHHHHHHHHHHHHHh
Q 031013 133 VSGKIVIT--GAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 133 ~SGKvvit--Gaks~e~~~~a~~~i~~~L~~ 161 (167)
.+|+..+. |+.+.+++.++++.+....++
T Consensus 158 vng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 158 VNGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp ETTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 39999988 999999999999888766544
No 69
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=53.70 E-value=19 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
|+++|.+|+++ ..|. +.+++.+.++++
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 56778899885 6785 777887777654
No 70
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=53.21 E-value=11 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=21.2
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|..|+++ .+|..+.+++.+.++..
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 45667889884 56999999888877654
No 71
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=53.10 E-value=22 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.0
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ ..| .+.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 46677888875 568 4777777777654
No 72
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=52.91 E-value=17 Score=26.50 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred EecCceEEEEccCCHHHHHHHHHHHHHHH
Q 031013 131 IFVSGKIVITGAKVRDETYTAFENIYPVL 159 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~i~~~L 159 (167)
+|.+|+.++.|+ +.+++.++++.+...-
T Consensus 159 ~ving~~~~~g~-~~~~l~~~i~~~~~~~ 186 (193)
T 2rem_A 159 IVVNGRYMVTGH-DFEDTLRITDYLVSRE 186 (193)
T ss_dssp EEETTTEEECCS-SHHHHHHHHHHHHHHH
T ss_pred EEECCEEEecCC-CHHHHHHHHHHHHHHH
Confidence 344899988999 9999999998876554
No 73
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=52.77 E-value=26 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCeEEEEEecCceEEE--EccCCHHHHHHHHHHHH
Q 031013 124 QPKIVLLIFVSGKIVI--TGAKVRDETYTAFENIY 156 (167)
Q Consensus 124 ~pk~t~lIF~SGKvvi--tGaks~e~~~~a~~~i~ 156 (167)
....+++|..+|+|+- .|..+.+++.+.++.++
T Consensus 126 ~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 126 HTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp ECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3447889999999974 56778888877776653
No 74
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=52.66 E-value=21 Score=24.00 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=21.4
Q ss_pred EEEEec-CceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFV-SGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~-SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|. .|+++ ..|..+.+++.+.+++.
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 456666 89885 67999998888877654
No 75
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=52.49 E-value=14 Score=27.17 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=24.5
Q ss_pred EecCceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 131 IFVSGKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+|.+|+..+.|+.+.+++.++++.++...++=
T Consensus 154 ~ving~~~~~g~~~~~~l~~~i~~~l~~~~~~ 185 (195)
T 2znm_A 154 VIVGGKYRVIFNNGFDGGVHTIKELVAKVREE 185 (195)
T ss_dssp EEETTTEEECCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34489988899988899999988877654443
No 76
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=52.01 E-value=20 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.7
Q ss_pred EecCceEEEEccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 131 IFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
+|.+|+..+.|+ +.+++.++++.+....++=|+
T Consensus 158 ~vvng~~~~~~~-~~e~l~~~i~~ll~k~r~~~~ 190 (193)
T 3hz8_A 158 VIVGGKYKVEFA-DWESGMNTIDLLADKVREEQK 190 (193)
T ss_dssp EEETTTEEECCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEecCC-CHHHHHHHHHHHHHHHHHhhh
Confidence 334899999888 999999999888776555444
No 77
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=51.83 E-value=18 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEecCceE--EEEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKI--VITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKv--vitGaks~e~~~~a~~~ 154 (167)
++.+|.+|++ ...|..+.+++.+.+++
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 4567778887 46788898888877654
No 78
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=51.62 E-value=12 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ ..|..+.+++.+.+++
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 46677888874 5789999888887764
No 79
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.52 E-value=22 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=22.9
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~ 158 (167)
++.+|..|+.+ ..|..+.+++.+.+++.++.
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence 45667778755 67888999888888776653
No 80
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=50.25 E-value=18 Score=25.02 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=23.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
|+++|..|+++ ++|..+.+...+.++++..
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~ 126 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence 67788899875 6899999888877766543
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=49.80 E-value=13 Score=29.03 Aligned_cols=30 Identities=17% Similarity=0.475 Sum_probs=24.4
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
|+.+|..|+++ .+|..+.+.+.+.++...|
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp 114 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP 114 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence 56778899987 7899999988888877654
No 82
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=48.72 E-value=21 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=22.3
Q ss_pred EEEEe-cCceEE-EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV-ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF-~SGKvv-itGaks~e~~~~a~~~i~ 156 (167)
++.++ .+|+++ ..|..+.+++.+.+++++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 34555 799996 888889988888887654
No 83
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=48.39 E-value=25 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|..|+++ ..|. +.+++.+.++++.
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA 111 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence 46677889874 5774 6778888887665
No 84
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=48.07 E-value=34 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.2
Q ss_pred EEEEEecCc----eEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 127 IVLLIFVSG----KIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 127 ~t~lIF~SG----KvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
+.+.|-..| .|.|+|. .+.+..|.+.|...|.+
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 334444444 5888887 78899999999988764
No 85
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=47.64 E-value=10 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=18.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAF 152 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~ 152 (167)
|+.+|..|+++ +.|..+.+++.+.+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 45677788875 57888888877655
No 86
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=47.57 E-value=24 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=18.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~ 154 (167)
++.+|.+|+++ .+| .+.+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 46677888874 567 577777776654
No 87
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=47.32 E-value=32 Score=22.41 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=19.7
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|.+|+++ ..|. +.+++.+.+++++
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 46667888875 6774 6777877776654
No 88
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=47.17 E-value=27 Score=24.51 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=25.4
Q ss_pred CeEEEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 125 PKIVLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 125 pk~t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
...+++|...|+|+ ..|..+.+++.+.+++++.
T Consensus 130 ~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 130 SIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp CCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34788999999997 4577888888888776654
No 89
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=46.89 E-value=22 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.4
Q ss_pred CceEEEEccCCHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENI 155 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i 155 (167)
+|++...|..+.+++.+.+++.
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 8888889998988888887764
No 90
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=46.73 E-value=21 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred EEEEe-cCceEE-EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV-ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF-~SGKvv-itGaks~e~~~~a~~~i~~ 157 (167)
++.+| .+|+++ ..|..+.+++.+.+++..+
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFLL 126 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHhh
Confidence 45566 778763 5788999998888876653
No 91
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=46.70 E-value=15 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=19.3
Q ss_pred EecCceEEEEc--cCCHHHHHHHHHHHH
Q 031013 131 IFVSGKIVITG--AKVRDETYTAFENIY 156 (167)
Q Consensus 131 IF~SGKvvitG--aks~e~~~~a~~~i~ 156 (167)
+|.+||.++.| +.+.+++.+.++.++
T Consensus 154 fiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 154 VVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp EEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred EEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 56699988765 678888877776553
No 92
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=46.44 E-value=18 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=21.4
Q ss_pred EEEEe-cCceEE-EE---ccCCHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV-IT---GAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF-~SGKvv-it---Gaks~e~~~~a~~~i~ 156 (167)
++.++ .+|+++ .. |..+.+++.+.+++++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 34455 799997 67 8889988888887653
No 93
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=46.37 E-value=8 Score=27.23 Aligned_cols=25 Identities=16% Similarity=-0.067 Sum_probs=20.1
Q ss_pred EEEEecCceEEEEccCCHHHHHHHH
Q 031013 128 VLLIFVSGKIVITGAKVRDETYTAF 152 (167)
Q Consensus 128 t~lIF~SGKvvitGaks~e~~~~a~ 152 (167)
++.+|..|+.+..|.-+.+++++.+
T Consensus 82 ~l~~~~dG~~v~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 82 VLFAVNEDKELCHYFLDSDVIGAYL 106 (107)
T ss_dssp EEEETTTTEEEECSSCCCHHHHHHH
T ss_pred eEEEEECCEEEEecCCCHHHHHHHh
Confidence 4557899999988998888877654
No 94
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=45.82 E-value=24 Score=22.86 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=17.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
|+.+|.+|+++ .+|..+ +++.+.+++.
T Consensus 77 t~~~~~~G~~~~~~~G~~~-~~l~~~l~~~ 105 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGADA-VGLEEKIKQH 105 (107)
T ss_dssp EEEEEETTEEEEEEESSCH-HHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCH-HHHHHHHHHh
Confidence 45677888875 668654 4476666554
No 95
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=45.47 E-value=14 Score=22.81 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.4
Q ss_pred CceEEEEccCCHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENI 155 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i 155 (167)
+|++...|..+.+++.+.+++.
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 8888889998999988887654
No 96
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=43.72 E-value=22 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=26.8
Q ss_pred CeEEEEEcCCeEEEEEecCceEEE--EccCCHHHHHHHHHHHHHHH
Q 031013 116 PGLIYRMKQPKIVLLIFVSGKIVI--TGAKVRDETYTAFENIYPVL 159 (167)
Q Consensus 116 Pglv~R~~~pk~t~lIF~SGKvvi--tGaks~e~~~~a~~~i~~~L 159 (167)
||..|.+.....+++|...|+|+- .|.-+.+++.+.+.+++..+
T Consensus 136 ~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 136 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp -----CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred CCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 444454445557899999999974 45556667777666665543
No 97
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=42.57 E-value=18 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.9
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 137 IVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 137 vvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
|.|+| +.+.+..|.+.|..++.+.
T Consensus 64 v~I~G--~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 64 LRITG--DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp EEEEE--CTTTHHHHHHHHHHHHCCC
T ss_pred EEEEe--CHHHHHHHHHHHHHHHhcc
Confidence 88999 6678999999998887654
No 98
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=42.31 E-value=38 Score=22.24 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=19.0
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|..|+++ .+|. +.+++.+.++++
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 46677788875 4588 667888877654
No 99
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=42.31 E-value=31 Score=24.93 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=28.8
Q ss_pred EEEEecCceEEE--EccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 128 VLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 128 t~lIF~SGKvvi--tGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
+++|...|+|+- .|..+.+++.+.++.++..+..-++
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~~~~~ 177 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIKKK 177 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHhccCc
Confidence 799999999964 4788888888888888776554333
No 100
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=42.30 E-value=50 Score=23.39 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=26.3
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~ 158 (167)
.|+++|.+|+.+ ++|+.+.+++...++.++..
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 468889999875 78999999999888877543
No 101
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=42.20 E-value=55 Score=22.88 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=46.4
Q ss_pred HhhCCCceecCCceeccCCHHHHHHHHHHHHHHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeeeccCC
Q 031013 35 ALQARNAEYNPKVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEL 114 (167)
Q Consensus 35 a~~~~n~eY~P~v~tGakS~~~a~~a~~k~~~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~YePE~ 114 (167)
...+.+.+|+|+-+ .+-++.-++.+.+.|+++|++ ||+ +.++.++..- =..+... ..+-+||+.
T Consensus 27 ~~~L~~~~Y~~~~~-----~~~~~~i~~~i~~~lk~l~~~-----YK~---iV~v~I~q~~-gqGi~~a--s~c~WD~~~ 90 (114)
T 1xdx_A 27 DAVLQNQQYSEAKV-----SQWTSSCLEHCIKRLTALNKP-----FKY---VVTCIIMQKN-GAGLHTA--ASCWWDSTT 90 (114)
T ss_dssp HHHHHSSCCCHHHH-----HHHHHHHHHHHHHHHHHHTCS-----SEE---EEEEEEECTT-TSCCEEE--EEECSCSSS
T ss_pred HHhhCCCCcCHHHH-----HHHHHHHHHHHHHHHHhhCCC-----ceE---EEEEEEEEcC-CCceeee--eeeeEcCCC
Confidence 34567777887532 455566777888888888864 332 2222333221 1111111 357888876
Q ss_pred CCeEEEEEcCC--eEEEEEec
Q 031013 115 FPGLIYRMKQP--KIVLLIFV 133 (167)
Q Consensus 115 fPglv~R~~~p--k~t~lIF~ 133 (167)
=..+.++..++ -+.+.||.
T Consensus 91 D~~~s~~~~n~sl~~v~tVfg 111 (114)
T 1xdx_A 91 DGSRTVRWENKSMYCICTVFG 111 (114)
T ss_dssp CCCEEEEEESSSCEEEEEEEE
T ss_pred CCEEEEEEECCCEEEEEEEEE
Confidence 56666666554 35555663
No 102
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=48.25 E-value=5.3 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.+|.+|+++ ..|..+.+++.+.++++
T Consensus 76 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 76 TLLLFKNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 45677889876 57888888887776653
No 103
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=41.88 E-value=36 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=20.6
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~ 160 (167)
.+.|.|+|. .+.+..|.+.|...+.
T Consensus 49 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 49 DRQVTITGS--AASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeC--HHHHHHHHHHHHHHHH
Confidence 678899996 7889999988887764
No 104
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.30 E-value=35 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.4
Q ss_pred eEEEEEecCc----eEEEEccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 126 KIVLLIFVSG----KIVITGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 126 k~t~lIF~SG----KvvitGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
.+.+-|=..| .|.|+|.. +.+..|.+.|..++.+...
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~--e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA--ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH--HHHHHHHHHHHHHHhhHHH
Confidence 3444444455 99999974 7899999999998877653
No 105
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=40.20 E-value=36 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.0
Q ss_pred ceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 135 GKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 135 GKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+.|.|+| +.+.++.|.+.|..++.+.
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhc
Confidence 5789999 4789999999999888765
No 106
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=40.19 E-value=24 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.1
Q ss_pred ecCceEEE--EccCCHHHHHHHHHHHH
Q 031013 132 FVSGKIVI--TGAKVRDETYTAFENIY 156 (167)
Q Consensus 132 F~SGKvvi--tGaks~e~~~~a~~~i~ 156 (167)
+.+||..+ .|+.+.+++.++++.+.
T Consensus 157 vvng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 157 VVNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp EETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred EECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 34999988 89999999999888764
No 107
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.07 E-value=27 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=21.8
Q ss_pred ceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 135 GKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 135 GKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+.|+|+| +.+.++.|.+.|..++.+-
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhcc
Confidence 6889999 7789999999998887654
No 108
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.85 E-value=36 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEecCceEE-EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV-ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv-itGaks~e~~~~a~~~i~ 156 (167)
++.+|..|++. ..|..+.+++.+.++++.
T Consensus 94 t~~~~~~G~~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 94 TIKILKKGQAVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence 34556777732 468889988888877654
No 109
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=39.51 E-value=35 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=14.2
Q ss_pred EEccC-CHHHHHHHHHHHHHH
Q 031013 139 ITGAK-VRDETYTAFENIYPV 158 (167)
Q Consensus 139 itGak-s~e~~~~a~~~i~~~ 158 (167)
+.|+- +.+++.+.++.++..
T Consensus 102 ~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 102 INWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp CCSCCSCHHHHHHHHHHHHHH
T ss_pred eeeecCcHHHHHHHHHHHHHH
Confidence 55665 478888888877664
No 110
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=38.88 E-value=33 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcccce----------EEEEEEEEEe
Q 031013 57 SKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCD 90 (167)
Q Consensus 57 a~~a~~k~~~~l~~lg~~~~~~~~----------~I~NIvas~~ 90 (167)
-+.+.+-+.+.|+++|+++..++| +.+||+|+..
T Consensus 31 ~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 31 HQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 346778889999999997755443 4679999875
No 111
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=38.77 E-value=53 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.4
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
.+.|.|+|. .+.++.|.+.|..++.+.
T Consensus 58 ~~~v~I~G~--~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 58 DRIITITGT--QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcC--HHHHHHHHHHHHHHHHhh
Confidence 478899996 678999999998888764
No 112
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.55 E-value=47 Score=22.58 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=27.3
Q ss_pred eEEEEEecCc-------eEEEEccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 126 KIVLLIFVSG-------KIVITGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 126 k~t~lIF~SG-------KvvitGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
.+.+-|=..| .|+|+|. .+.+..|.+.|..++.++.+
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHHHh
Confidence 3444444555 8999996 67889999999888877664
No 113
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=37.50 E-value=65 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.7
Q ss_pred ceEEEEccCCHHHHHHHHHHHHHHHHhhhh
Q 031013 135 GKIVITGAKVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 135 GKvvitGaks~e~~~~a~~~i~~~L~~~r~ 164 (167)
+.|.|+|. .+.+..|.+.|..++.+.+.
T Consensus 60 r~v~I~G~--~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 60 RSCMLTGT--PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeC--HHHHHHHHHHHHHHHHhccc
Confidence 57899996 78899999999999888764
No 114
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=37.14 E-value=25 Score=23.87 Aligned_cols=26 Identities=0% Similarity=0.114 Sum_probs=18.7
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFE 153 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~ 153 (167)
++.+|..|+++ ..|..+.+++.+.++
T Consensus 99 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 99 TIILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 45566888876 458889888877664
No 115
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.43 E-value=32 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred eEEEEccCCHHHHHHHHHHHHHHHHhhh
Q 031013 136 KIVITGAKVRDETYTAFENIYPVLTEFR 163 (167)
Q Consensus 136 KvvitGaks~e~~~~a~~~i~~~L~~~r 163 (167)
+|.|+|.+. .++.|.+.|..++.+.+
T Consensus 62 ~V~I~G~~~--~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 62 TVVIRGPSS--DVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp EEEEESCHH--HHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCHH--HHHHHHHHHHHHHhhhh
Confidence 999999755 89999999999888765
No 116
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=35.64 E-value=48 Score=25.01 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.6
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
|+++|..|+++ ..|..+.+++.+.++++.
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 56778899885 789999999988887664
No 117
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=35.32 E-value=24 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=19.2
Q ss_pred EEEEecCce----EEEEccCCHHHHHHHHHH
Q 031013 128 VLLIFVSGK----IVITGAKVRDETYTAFEN 154 (167)
Q Consensus 128 t~lIF~SGK----vvitGaks~e~~~~a~~~ 154 (167)
++.+|..|+ ...+|..+.+++.+.+++
T Consensus 84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~ 114 (120)
T 1mek_A 84 TIKFFRNGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred EEEEEeCCCcCCcccccCccCHHHHHHHHHh
Confidence 455667887 457788888887776654
No 118
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=35.29 E-value=39 Score=27.11 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=24.8
Q ss_pred CceEE-EEccCCHHHHHHHHHHHHHHHHh
Q 031013 134 SGKIV-ITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 134 SGKvv-itGaks~e~~~~a~~~i~~~L~~ 161 (167)
|||++ ++|+.++.+++.|++.....+.+
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~ 111 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIEN 111 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 69888 99999999999999998887765
No 119
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=35.27 E-value=53 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
|+.+|.+|+.+ ..|..+.+++.+.++..
T Consensus 195 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 195 KIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 57788999865 68999998888777654
No 120
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=35.07 E-value=26 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.4
Q ss_pred CceEEEEccC-CHHHHHHH
Q 031013 134 SGKIVITGAK-VRDETYTA 151 (167)
Q Consensus 134 SGKvvitGak-s~e~~~~a 151 (167)
+|+++..|.. +.+++.+.
T Consensus 57 ~G~~~~~G~~~~~~~l~~~ 75 (77)
T 1ilo_A 57 DGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp TTEEEECSSCCCHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 8888888987 88887764
No 121
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=34.98 E-value=37 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.4
Q ss_pred ecCceEEEE--ccCCHHHHHHHHHHHH
Q 031013 132 FVSGKIVIT--GAKVRDETYTAFENIY 156 (167)
Q Consensus 132 F~SGKvvit--Gaks~e~~~~a~~~i~ 156 (167)
|.+|+..+. |+.+.+++.++++.+.
T Consensus 167 ~ing~~~~~~~g~~~~~~l~~~i~~~l 193 (195)
T 3c7m_A 167 VVNGKYLIYTKSIKSIDAMADLIRELA 193 (195)
T ss_dssp EETTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCEEEeccCCCCCHHHHHHHHHHHH
Confidence 448998776 9999999999988764
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=34.97 E-value=50 Score=23.64 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=27.7
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhhhhhc
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ 166 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~r~~~ 166 (167)
...++.|...+++++.+.++.|...|.++.+..
T Consensus 146 ~~~~i~~~~~~~~ev~~~v~~i~~~l~~~~~~~ 178 (180)
T 3iij_A 146 EEIVHQLPSNKPEELENNVDQILKWIEQWIKDH 178 (180)
T ss_dssp GGGEEEEECSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 367777888999999999999999999887554
No 123
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=34.81 E-value=31 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=23.3
Q ss_pred EEEEecCceE--EEEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKI--VITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKv--vitGaks~e~~~~a~~~i~~ 157 (167)
|+.+|..|++ ..+|..+.+++.+.+++.++
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~ 202 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhCc
Confidence 5667789986 45788899998888877654
No 124
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=34.27 E-value=41 Score=24.09 Aligned_cols=30 Identities=0% Similarity=-0.048 Sum_probs=24.7
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
.+++|...|+++ ..|..+.+++.+.+++++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 578899999996 568888888888887765
No 125
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=33.71 E-value=34 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEEe-cCceEE--EEcc----------CCHHHHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV--ITGA----------KVRDETYTAFENIYPVL 159 (167)
Q Consensus 128 t~lIF-~SGKvv--itGa----------ks~e~~~~a~~~i~~~L 159 (167)
|+.+| .+|+++ +.|. .+.+++.+.+++++..+
T Consensus 106 t~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 106 RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp EEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 67778 799987 6786 66777777777766544
No 126
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.41 E-value=44 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 129 LLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 129 ~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
++|=.+|+++ ..|..+.+++.+.++.++.
T Consensus 111 ~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 111 VLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3333899985 7898899888888776653
No 127
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.27 E-value=34 Score=23.76 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEecCceEE--EEccC-------CHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAK-------VRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF~SGKvv--itGak-------s~e~~~~a~~~i 155 (167)
|+++|..|+++ ++|.. +.+++++.++..
T Consensus 83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 67788899875 67886 666776666543
No 128
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=33.13 E-value=66 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.5
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEFR 163 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~r 163 (167)
.+.|+|+|. .+.+..|.+.|..++.+.+
T Consensus 135 ~~~v~I~G~--~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 135 EKIAHIMGP--PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcC--HHHHHHHHHHHHHHHhhhh
Confidence 578999996 6789999999988887764
No 129
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=32.82 E-value=17 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=24.7
Q ss_pred EEEEecCceEEE--EccCCHHHHHHHHHHHHHHHHhh
Q 031013 128 VLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 128 t~lIF~SGKvvi--tGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+++|-.+|+++- .|..+.+++.+.++++...+.++
T Consensus 125 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~~~~ 161 (164)
T 2h30_A 125 WALIGKDGDVQRIVKGSINEAQALALIRNPNADLGSL 161 (164)
T ss_dssp EEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCCGGG
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 344448999864 58899999988887765544433
No 130
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=32.81 E-value=52 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcccce----------EEEEEEEEEe
Q 031013 53 SEQQSKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCD 90 (167)
Q Consensus 53 S~~~a~~a~~k~~~~l~~lg~~~~~~~~----------~I~NIvas~~ 90 (167)
|..+ +.+++-+.+.|+++|+++....| ...||+|...
T Consensus 44 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 90 (309)
T 3tc8_A 44 TAAH-KACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFD 90 (309)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEEC
Confidence 4444 67888899999999998766554 3689998865
No 131
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=32.21 E-value=85 Score=20.50 Aligned_cols=27 Identities=26% Similarity=0.148 Sum_probs=21.6
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
.+.|.|+|. .+.+..|.+.|..++.+-
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 50 NRRVTITGS--PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHhcc
Confidence 467889996 778999998888887654
No 132
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=31.57 E-value=72 Score=22.91 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=27.6
Q ss_pred EEEEEecCceEEE--EccCCHHHHHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 127 ~t~lIF~SGKvvi--tGaks~e~~~~a~~~i~~~L~ 160 (167)
.+++|-.+|+|+- .|..+.+++.+.++.++..+.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 5788889999974 488899999988888877654
No 133
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=30.54 E-value=55 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEe-cCceEE--EEccCCHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF-~SGKvv--itGaks~e~~~~a~~~i 155 (167)
++.++ ..|+++ ..|..+.+++.+.++++
T Consensus 107 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 107 TQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred eEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 34455 899985 67888888888877653
No 134
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=30.41 E-value=56 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcccce----------EEEEEEEEEe
Q 031013 53 SEQQSKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCD 90 (167)
Q Consensus 53 S~~~a~~a~~k~~~~l~~lg~~~~~~~~----------~I~NIvas~~ 90 (167)
|..+ +.+++-+.+.|+++|+++..+.| ...||+|...
T Consensus 46 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 92 (314)
T 3gux_A 46 TQAH-KECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYK 92 (314)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEEC
Confidence 3444 77888899999999998765554 3589999865
No 135
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=30.21 E-value=55 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcccce----------EEEEEEEEEe
Q 031013 57 SKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCD 90 (167)
Q Consensus 57 a~~a~~k~~~~l~~lg~~~~~~~~----------~I~NIvas~~ 90 (167)
.+.+.+-+.+.|+++|+++..++| ...||+|+.+
T Consensus 58 ~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~ 101 (330)
T 4fai_A 58 HSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLN 101 (330)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEEC
Confidence 345778899999999998765544 4579999865
No 136
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=30.13 E-value=53 Score=22.03 Aligned_cols=26 Identities=4% Similarity=-0.030 Sum_probs=18.5
Q ss_pred EEEecCce----EEEEccCCHHHHHHHHHH
Q 031013 129 LLIFVSGK----IVITGAKVRDETYTAFEN 154 (167)
Q Consensus 129 ~lIF~SGK----vvitGaks~e~~~~a~~~ 154 (167)
+.+|..|+ +...|.++.+++.+-+++
T Consensus 96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp EEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 45565553 567899999988877654
No 137
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.96 E-value=40 Score=22.51 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=18.4
Q ss_pred EEEecCceE-EEEccCCHHHHHHHHHHH
Q 031013 129 LLIFVSGKI-VITGAKVRDETYTAFENI 155 (167)
Q Consensus 129 ~lIF~SGKv-vitGaks~e~~~~a~~~i 155 (167)
+.+|..|++ ...|..+.+++.+.+++.
T Consensus 81 ~~~~~~G~~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 81 IYHCKDGEFRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred EEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence 445577774 256888888887777654
No 138
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=29.96 E-value=75 Score=21.14 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=21.7
Q ss_pred EEEEe-cCceEEE--EccCCHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIVI--TGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF-~SGKvvi--tGaks~e~~~~a~~~i~ 156 (167)
++.++ .+|+++- .|..+.+++.+.+++++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45566 8999875 57788888888887664
No 139
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=29.85 E-value=52 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEecCceEEEEccC-CHHHHHHHHHHHH
Q 031013 129 LLIFVSGKIVITGAK-VRDETYTAFENIY 156 (167)
Q Consensus 129 ~lIF~SGKvvitGak-s~e~~~~a~~~i~ 156 (167)
++|=.+|+++-.|.. +.+++.+.++.+.
T Consensus 135 ~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 135 VIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 334489999999999 9999988887653
No 140
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=29.68 E-value=79 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=22.2
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENI 155 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i 155 (167)
.+++|-.+|+++ ..|..+.+++.+.+++.
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 456777999986 67888888888877654
No 141
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=29.52 E-value=53 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.4
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
.+.|.|+| +.+.+..|.+.|..++.+
T Consensus 134 ~~~v~I~G--~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 134 ERAITIAG--IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEc--CHHHHHHHHHHHHHHHhc
Confidence 57889999 688999999999888765
No 142
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=29.33 E-value=57 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.8
Q ss_pred cCceEEEEccCCHHHHHHHHHHHHH
Q 031013 133 VSGKIVITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 133 ~SGKvvitGaks~e~~~~a~~~i~~ 157 (167)
.+||..+.|+.+.+.+.++++++..
T Consensus 189 v~g~~~v~Ga~~~e~~~~~i~~~~~ 213 (239)
T 3gl5_A 189 LDRAYGVSGAQPAEVFTQALTQAWG 213 (239)
T ss_dssp ETTTEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCcEeecCCCCHHHHHHHHHHHHh
Confidence 4899889999999999999988764
No 143
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=29.24 E-value=1e+02 Score=21.34 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEccCCHHHHHHHHHHHHHHHHhhh
Q 031013 136 KIVITGAKVRDETYTAFENIYPVLTEFR 163 (167)
Q Consensus 136 KvvitGaks~e~~~~a~~~i~~~L~~~r 163 (167)
.|+|+|. .+.++.|.+.|..++.+..
T Consensus 57 ~V~I~G~--~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 57 IAHIMGP--PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHhccc
Confidence 5888986 7889999999988887654
No 144
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=29.10 E-value=1.1e+02 Score=21.08 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCeEEEEEec-CceEEEEccCCHHHHHHHH
Q 031013 124 QPKIVLLIFV-SGKIVITGAKVRDETYTAF 152 (167)
Q Consensus 124 ~pk~t~lIF~-SGKvvitGaks~e~~~~a~ 152 (167)
+-.+.++||+ +||+.--++.+.+++-+-+
T Consensus 39 da~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 39 DCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp TCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 3467888996 7999998886655444433
No 145
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=28.88 E-value=40 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=20.6
Q ss_pred cCCCeeeccCCCCeEEEEEcCCeEEEEEecCc
Q 031013 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135 (167)
Q Consensus 104 ~~~~~~YePE~fPglv~R~~~pk~t~lIF~SG 135 (167)
++...+|||.. .+.|++. +..+|+|.||
T Consensus 62 Fgs~vthe~~~--fiyF~~g--~~~iLlfKtg 89 (89)
T 3rjs_A 62 FGSYVTHETHH--FIYFYIG--QVAVLLFKSG 89 (89)
T ss_dssp CCCCCCEEEEE--EEEEEET--TEEEEEEEEC
T ss_pred eeEEEEEcCCc--EEEEEEC--CEEEEEEecC
Confidence 45567888874 4667764 4789999998
No 146
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=28.65 E-value=72 Score=23.10 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.1
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
+|-++++| +..+++.|++.....+.+
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~ 99 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGR 99 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhh
Confidence 57889999 889999999998887754
No 147
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=28.19 E-value=60 Score=20.49 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=19.1
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~ 160 (167)
.+.|.|+|. .+.+..|.+.|..++.
T Consensus 50 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 50 NRRVTITGS--PAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEES--HHHHHHHHHHHHHHCC
T ss_pred eeEEEEEeC--HHHHHHHHHHHHHHHh
Confidence 367888986 7789999888877653
No 148
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=27.99 E-value=27 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred EEEEEec-CceEE--EEcc-------CCHHHHHHHHHHHHHHHHhhhh
Q 031013 127 IVLLIFV-SGKIV--ITGA-------KVRDETYTAFENIYPVLTEFRK 164 (167)
Q Consensus 127 ~t~lIF~-SGKvv--itGa-------ks~e~~~~a~~~i~~~L~~~r~ 164 (167)
.|+++|. .|+++ ++|+ -+.+++.+.++.+-..|++++.
T Consensus 102 PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~ 149 (151)
T 3ph9_A 102 PRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQS 149 (151)
T ss_dssp SEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred CEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence 3567776 89987 4798 5567888888888888877654
No 149
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=27.84 E-value=37 Score=20.45 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=18.0
Q ss_pred EecCceEEEEccCCHHHHHHHHHH
Q 031013 131 IFVSGKIVITGAKVRDETYTAFEN 154 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~ 154 (167)
=|.+|++.++|.-+.+++.++++.
T Consensus 34 ~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 34 DLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp ETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EcCCCEEEEEecCCHHHHHHHHHH
Confidence 367788888887788877777653
No 150
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=27.82 E-value=70 Score=25.80 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.3
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+|+++++|+-++.+++.|++.....+.+.
T Consensus 82 ~g~~ii~gg~dVs~V~sAve~~~~~~~~~ 110 (230)
T 3io0_A 82 HGIFIVLKAADVSDARRAVEIALKQTDKY 110 (230)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999998887653
No 151
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=27.67 E-value=2.2e+02 Score=22.23 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.5
Q ss_pred cc-CCHHHHHHHHHHHHHHHHhhhhhc
Q 031013 141 GA-KVRDETYTAFENIYPVLTEFRKVQ 166 (167)
Q Consensus 141 Ga-ks~e~~~~a~~~i~~~L~~~r~~~ 166 (167)
|. .+.++++++++.+...+.++++.+
T Consensus 366 ~~~~~~~~i~~~~~~l~~~l~~~~~~~ 392 (393)
T 3kgw_A 366 GYNATTENVDRVAEALREALQHCPKNK 392 (393)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHSCBC-
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 54 489999999999999999887654
No 152
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=27.34 E-value=61 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=22.4
Q ss_pred eEEEEEecCceEEEEccCCHHHHHHHHHHHHHHHH
Q 031013 126 KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 126 k~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~L~ 160 (167)
++-+.|...|. ++.+..+-+|++.|++.....|.
T Consensus 49 ~~ei~i~~~g~-~l~a~~~~~d~y~Aid~a~dkle 82 (96)
T 3tqm_A 49 IVDANVKLPGS-TINAQAESDDMYKTVDLLMHKLE 82 (96)
T ss_dssp EEEEEEEETTE-EEEEEECCSCHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCc-EEEEEEecCCHHHHHHHHHHHHH
Confidence 46777888888 45445555677777776666543
No 153
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=26.92 E-value=69 Score=25.80 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcccc----------eEEEEEEEEEe
Q 031013 57 SKLAARKYARIIQKLGFPAKFKD----------FKIQNIVGSCD 90 (167)
Q Consensus 57 a~~a~~k~~~~l~~lg~~~~~~~----------~~I~NIvas~~ 90 (167)
.+.+.+-+.+.|+++|+++..+. .+..||+|+..
T Consensus 47 ~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~ 90 (309)
T 4fuu_A 47 HVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYK 90 (309)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEEC
Confidence 34577889999999999765443 35789999875
No 154
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=26.66 E-value=39 Score=26.86 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=17.7
Q ss_pred ceeccCCHHHHHHHHHHHHH
Q 031013 47 VCTGAKSEQQSKLAARKYAR 66 (167)
Q Consensus 47 v~tGakS~~~a~~a~~k~~~ 66 (167)
.++||+|.++|+..++.+++
T Consensus 90 ~V~gA~s~~~A~~iA~~Ia~ 109 (205)
T 3it4_B 90 TVTGAATEDDALVAARQIAR 109 (205)
T ss_dssp EEEEESSHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhc
Confidence 68899999999999997763
No 155
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=26.27 E-value=90 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=18.3
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
++.+|..|+++ ..|. +.+++.+.+++++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 88 TFLFFKNSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 45667788875 5675 6667776666554
No 156
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=25.90 E-value=57 Score=23.13 Aligned_cols=31 Identities=3% Similarity=-0.047 Sum_probs=22.0
Q ss_pred EEEEe-cCceEE--EEccCC-HHHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIV--ITGAKV-RDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF-~SGKvv--itGaks-~e~~~~a~~~i~~~ 158 (167)
++.+| ..|+++ ..|..+ .+++.+.+++++..
T Consensus 133 t~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~ 167 (172)
T 3f9u_A 133 FYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLEN 167 (172)
T ss_dssp EEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHH
Confidence 45566 788886 469888 88888777666543
No 157
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=25.62 E-value=1e+02 Score=21.57 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=19.7
Q ss_pred EEEEe-cCceEEEE-ccC--CHHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIVIT-GAK--VRDETYTAFENIY 156 (167)
Q Consensus 128 t~lIF-~SGKvvit-Gak--s~e~~~~a~~~i~ 156 (167)
++.+| .+|+++-. |.. +.+++.+.++.++
T Consensus 119 t~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 119 ELVFIDAEGKQLARMGFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp EEEEECTTCCEEEEECCCTTCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 45566 78887654 777 7777777766553
No 158
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=25.17 E-value=52 Score=24.79 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.0
Q ss_pred EecCceEEEEccCCHHHHHHHHHHHHHH
Q 031013 131 IFVSGKIVITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~i~~~ 158 (167)
+|.+|+. +.|+.+.+++.++++.+...
T Consensus 167 fvvnG~~-~~G~~~~e~l~~~i~~~~~~ 193 (202)
T 3gha_A 167 IYVNDKV-IKNFADYDEIKETIEKELKG 193 (202)
T ss_dssp EEETTEE-CSCTTCHHHHHHHHHHHHHH
T ss_pred EEECCEE-ecCCCCHHHHHHHHHHHHHh
Confidence 3448997 78999999999999877654
No 159
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=24.69 E-value=96 Score=22.44 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.9
Q ss_pred EEEEEecCceEEEE--ccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIVIT--GAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvvit--Gaks~e~~~~a~~~i~ 156 (167)
.+++|...|+|+-. |..+.+++.+.++.++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 67899999999754 7778888887777664
No 160
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=24.68 E-value=85 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.8
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
.|+++++|+-++.+++.|++.-...+.++
T Consensus 110 ~g~~ii~gg~dVs~V~saVeaa~~~~~~~ 138 (258)
T 4fay_A 110 HGCLIIIGGDDPADARQAIRVALDNLHRT 138 (258)
T ss_dssp BCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999887776653
No 161
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=24.42 E-value=44 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=19.5
Q ss_pred CCeeeccCCCCeEEEEEcCCeEEEEEecCc
Q 031013 106 AFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135 (167)
Q Consensus 106 ~~~~YePE~fPglv~R~~~pk~t~lIF~SG 135 (167)
...+|||.. .+.|++. +..+|||.||
T Consensus 72 s~vThe~~~--fiyF~~g--~~aiLlfKtg 97 (97)
T 4ds1_A 72 SYVTHEKGH--FVYFYIG--PLAFLVFKTA 97 (97)
T ss_dssp EEEEECTTE--EEEEEET--TEEEEEEECC
T ss_pred EEEEEcCCc--EEEEEEC--CEEEEEEecC
Confidence 457888874 4677774 5789999998
No 162
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=24.37 E-value=86 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.6
Q ss_pred CceEE-EEccCCHHHHHHHHHHHHHHHHhh
Q 031013 134 SGKIV-ITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 134 SGKvv-itGaks~e~~~~a~~~i~~~L~~~ 162 (167)
+|++. ..|..+.+++.+.++.......+-
T Consensus 196 ~G~~~~~~G~~~~~~l~~~l~~~~~~~~~~ 225 (229)
T 2ywm_A 196 NKGVAEFVGAQPENAFLGYIMAVYEKLKRE 225 (229)
T ss_dssp GGGTEEEESCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCHHHHHHHHHHHhhhhhhh
Confidence 89965 899999999999888887765543
No 163
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=23.90 E-value=80 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=19.0
Q ss_pred EEEe-cCceE-EEEccCCHHHHHHHHHHHH
Q 031013 129 LLIF-VSGKI-VITGAKVRDETYTAFENIY 156 (167)
Q Consensus 129 ~lIF-~SGKv-vitGaks~e~~~~a~~~i~ 156 (167)
+.+| ..|++ ...|..+.+++.+.++.++
T Consensus 109 ~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 109 IWFVPMKGEPQVNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp EEEECSSSCCEEEESCCCHHHHHHHHHHTT
T ss_pred EEEEeCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 4444 56663 5678889988888876653
No 164
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=23.77 E-value=51 Score=22.75 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCCcccceEEEEEEEEEecCCccchHhHHHHcCCCeee----ccCCCCeEEEEEcC
Q 031013 59 LAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY----EPELFPGLIYRMKQ 124 (167)
Q Consensus 59 ~a~~k~~~~l~~lg~~~~~~~~~I~NIvas~~l~~~I~L~~la~~~~~~~~Y----ePE~fPglv~R~~~ 124 (167)
...+|+++.|++.|+. +|||=|-.+.+ .+-.++.|...+....+| +|+.-.=.+|++.+
T Consensus 15 kr~~kv~k~L~~yGl~------rvQ~SVFe~~l-t~~~~~~l~~~L~~~i~~~~~~d~~~Dsv~iy~l~~ 77 (101)
T 2ivy_A 15 NLRNRVAEFLKKKGLD------RIQYSVFMGDL-NSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITE 77 (101)
T ss_dssp HHHHHHHHHHHHTTCE------EEETTEEEEEE-CHHHHHHHHHHHHHHTCSCCCSTTCCEEEEEEEECH
T ss_pred HHHHHHHHHHHHhCCh------hccccEEEEEc-CHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEEEeCc
Confidence 5678999999999974 68888888888 667777777666444556 78765555666654
No 165
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=23.39 E-value=71 Score=21.76 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=20.5
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
.|.|.|+|... .+..|.+.|..++.+
T Consensus 61 ~~~V~I~G~~~--~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 61 SRLIKISGTQK--EVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEEHH--HHHHHHHHHHHHHHH
T ss_pred cceEEEEcCHH--HHHHHHHHHHHHHhh
Confidence 68899999654 688888888887764
No 166
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=23.31 E-value=29 Score=22.95 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=14.4
Q ss_pred ccCCHHHHHHHHHHHHHHHH
Q 031013 141 GAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 141 Gaks~e~~~~a~~~i~~~L~ 160 (167)
|..+.+++.+.+++++..+.
T Consensus 97 ~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 97 NSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp CCSCHHHHHHHHHHHHHCC-
T ss_pred CcCCHHHHHHHHHHHHHhhh
Confidence 44899999998888765443
No 167
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=22.81 E-value=41 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=17.8
Q ss_pred ceeccCCHHHHHHHHHHHHH
Q 031013 47 VCTGAKSEQQSKLAARKYAR 66 (167)
Q Consensus 47 v~tGakS~~~a~~a~~k~~~ 66 (167)
.++||+|.++|+..++.+++
T Consensus 96 ~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 96 EVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEESSHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHcC
Confidence 68899999999999997764
No 168
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=22.68 E-value=77 Score=20.05 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=21.8
Q ss_pred eEEEEEecCc----eEEEEccCCHHHHHHHHHHHHHH
Q 031013 126 KIVLLIFVSG----KIVITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 126 k~t~lIF~SG----KvvitGaks~e~~~~a~~~i~~~ 158 (167)
.+.+-|=..| .|.|+|. . +.+..|.+.|..+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~-~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD-P-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES-S-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC-H-HHHHHHHHHHHHH
Confidence 4444555566 9999998 3 6788888877654
No 169
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=22.55 E-value=89 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=18.4
Q ss_pred CceEEEEccCCHHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENIY 156 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~ 156 (167)
+|+ .+.|+.+.+++.++++.+.
T Consensus 151 ~g~-~~~G~~~~~~l~~~i~~~l 172 (175)
T 3gyk_A 151 EDA-LVPGFVEQSQLQDAVDRAR 172 (175)
T ss_dssp TTE-EECSCCCHHHHHHHHHHHH
T ss_pred CCE-EeeCCCCHHHHHHHHHHHH
Confidence 777 6789999999999988765
No 170
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=22.27 E-value=43 Score=26.77 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.6
Q ss_pred ceeccCCHHHHHHHHHHHHH
Q 031013 47 VCTGAKSEQQSKLAARKYAR 66 (167)
Q Consensus 47 v~tGakS~~~a~~a~~k~~~ 66 (167)
.++||+|.++|+..++.+++
T Consensus 89 ~V~GA~s~~~A~~vA~sIa~ 108 (213)
T 2v4i_B 89 QVTGARDDAQAKRVGKTVVN 108 (213)
T ss_dssp EEEEESSHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHcc
Confidence 78899999999999997763
No 171
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.22 E-value=1.2e+02 Score=20.62 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~~ 157 (167)
.+++|-.+|+++ ..|..+.+++.+.++.++.
T Consensus 119 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~ 151 (165)
T 3or5_A 119 TSFVIDASGNVSGVIVGPRSKADFDRIVKMALG 151 (165)
T ss_dssp EEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 445555899986 5588999999888877753
No 172
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=22.10 E-value=1.1e+02 Score=25.47 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHhc--CCCCcccceE---------EEEEEEEEe
Q 031013 53 SEQQSKLAARKYARIIQKL--GFPAKFKDFK---------IQNIVGSCD 90 (167)
Q Consensus 53 S~~~a~~a~~k~~~~l~~l--g~~~~~~~~~---------I~NIvas~~ 90 (167)
|..+ +.+.+-+.+.|+++ |+++..+.|. ..||+|+..
T Consensus 57 S~~~-~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~ 104 (330)
T 3pb6_X 57 SPGN-LQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLD 104 (330)
T ss_dssp SHHH-HHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred CHHH-HHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEEC
Confidence 4444 35888899999999 7777666553 589999864
No 173
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=22.07 E-value=1.1e+02 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred CceEEEEccCCHHHHHHHHHHHH
Q 031013 134 SGKIVITGAKVRDETYTAFENIY 156 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~ 156 (167)
+|+++..|..+.+++.+.+++.+
T Consensus 203 ~G~~~~~G~~~~~~l~~~l~~~~ 225 (243)
T 2hls_A 203 NGYLVFVGVPYEEDFLDYVKSAA 225 (243)
T ss_dssp TTEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999998888776654
No 174
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.95 E-value=1.3e+02 Score=17.55 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=23.6
Q ss_pred eccCCHHHHHHHHHHHHHHHHh-cCCCCcc
Q 031013 49 TGAKSEQQSKLAARKYARIIQK-LGFPAKF 77 (167)
Q Consensus 49 tGakS~~~a~~a~~k~~~~l~~-lg~~~~~ 77 (167)
.+.+|.++-+.-++.+.+.|.+ +|.+...
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~~lg~~~~~ 37 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKETTGASEEK 37 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 4566999999999999999987 7987443
No 175
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=21.84 E-value=98 Score=21.11 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=22.5
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
.+++|-..|+++ ..|..+.+++.+.++++.
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 108 FTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp EEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 456666999984 568888888888877664
No 176
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=21.73 E-value=87 Score=21.62 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=24.0
Q ss_pred EEEEEecCceEEE--EccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIVI--TGAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvvi--tGaks~e~~~~a~~~i~ 156 (167)
.+++|-.+|+|+- .|..+.+++.+.+++++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999974 48778888888887764
No 177
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=21.71 E-value=73 Score=20.59 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=19.8
Q ss_pred CceEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 134 SGKIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 134 SGKvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
.+.|.|+|.. +.+..|.+.|..++.+
T Consensus 50 ~r~v~I~G~~--~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 50 GRQVTITGSA--ASISLAQYLINARLSS 75 (82)
T ss_dssp EEEEEEEECH--HHHHHHHHHHHHHTC-
T ss_pred ceEEEEEcCH--HHHHHHHHHHHHHHHh
Confidence 4678899864 7899999888877654
No 178
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=21.68 E-value=42 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC
Q 031013 53 SEQQSKLAARKYARIIQKLGFP 74 (167)
Q Consensus 53 S~~~a~~a~~k~~~~l~~lg~~ 74 (167)
..|+|+.++-+|.+.|++.|-.
T Consensus 43 ~~e~Ak~~AIef~k~le~~Gr~ 64 (77)
T 3igm_B 43 DKEKARLAAVEFMKTVENNGRK 64 (77)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhcCce
Confidence 4589999999999999999864
No 179
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=21.45 E-value=76 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=22.7
Q ss_pred eEEEEEecCceEEEEccCCHHHHHHHHHHHHHHHH
Q 031013 126 KIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLT 160 (167)
Q Consensus 126 k~t~lIF~SGKvvitGaks~e~~~~a~~~i~~~L~ 160 (167)
++.+.+...|..+ ....+-+|++.|++.....|.
T Consensus 55 ~~eitv~~~g~~l-~a~~~~~d~y~Aid~a~dkle 88 (105)
T 2ywq_A 55 RAEIQVDLPGGLV-RVEEEDADLYAAIDRAVDRLE 88 (105)
T ss_dssp EEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCcEE-EEEEccCCHHHHHHHHHHHHH
Confidence 5777888889644 444555677777777666553
No 180
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=21.39 E-value=1.4e+02 Score=20.08 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=21.7
Q ss_pred EEEEecCceEEE--EccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIVI--TGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~SGKvvi--tGaks~e~~~~a~~~i~~ 157 (167)
+++|=..|+++- .|..+.+++.+.++.+++
T Consensus 107 ~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~ 138 (151)
T 2f9s_A 107 TFLINPEGKVVKVVTGTMTESMIHDYMNLIKP 138 (151)
T ss_dssp EEEECTTSEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred EEEECCCCcEEEEEeCCCCHHHHHHHHHHHHh
Confidence 344448999864 588899888888877643
No 181
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=21.12 E-value=95 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=21.5
Q ss_pred EEEEEecCceEE--EEccC--CHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAK--VRDETYTAFENI 155 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGak--s~e~~~~a~~~i 155 (167)
.+++|-.+|+|+ ..|.. +.+++.+.++.+
T Consensus 138 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 170 (174)
T 1xzo_A 138 SFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA 170 (174)
T ss_dssp EEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 578899999998 45775 467777776654
No 182
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=21.09 E-value=1.4e+02 Score=19.75 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.2
Q ss_pred EEEEe-cCceEEEE--c-------cCCHHHHHHHHHHH
Q 031013 128 VLLIF-VSGKIVIT--G-------AKVRDETYTAFENI 155 (167)
Q Consensus 128 t~lIF-~SGKvvit--G-------aks~e~~~~a~~~i 155 (167)
++.+| .+|+++-. | ..+.+++.+.++++
T Consensus 94 t~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 94 AVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 45667 88998754 4 45777777776655
No 183
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.06 E-value=8.5 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=20.5
Q ss_pred EEEEecCceEE--EEccCCHHHHHHHHHHHHHH
Q 031013 128 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 158 (167)
Q Consensus 128 t~lIF~SGKvv--itGaks~e~~~~a~~~i~~~ 158 (167)
|+.+|..|+++ ..|..+.+++.+.++....+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (137)
T 2dj0_A 90 TLILFQGGKEAMRRPQIDKKGRAVSWTFSEENV 122 (137)
T ss_dssp EEEEESSSSEEEEESCBCSSSCBCCCCCCHHHH
T ss_pred EEEEEECCEEEEEecCcCchHHHHHHHhcccch
Confidence 56788999987 77887776655544433333
No 184
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.99 E-value=1.6e+02 Score=19.93 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=23.1
Q ss_pred EEEEEecCceEE--EEccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIV--ITGAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvv--itGaks~e~~~~a~~~i~ 156 (167)
.+++|=..|+++ ..|..+.+++.+.++.++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 456666899995 458889988888887764
No 185
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=20.93 E-value=1.3e+02 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=22.2
Q ss_pred EecCceEEEEccCCHHHHHHHHHHHHHHH
Q 031013 131 IFVSGKIVITGAKVRDETYTAFENIYPVL 159 (167)
Q Consensus 131 IF~SGKvvitGaks~e~~~~a~~~i~~~L 159 (167)
+|.+|+ .+.|+.+.+++.+.++.....+
T Consensus 186 v~~dG~-~~~G~~~~~~l~~~l~~~~~~~ 213 (216)
T 1eej_A 186 VLSNGT-LVPGYQPPKEMKEFLDEHQKMT 213 (216)
T ss_dssp ECTTSC-EEESCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCe-EecCCCCHHHHHHHHHHhhhhc
Confidence 667886 5689999999999988876553
No 186
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=20.87 E-value=91 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=20.3
Q ss_pred cCCCeeeccCCCCeEEEEEcCCeEEEEEecCc
Q 031013 104 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 135 (167)
Q Consensus 104 ~~~~~~YePE~fPglv~R~~~pk~t~lIF~SG 135 (167)
++...+|||.. .+.|++. +..+|+|.+|
T Consensus 75 FGs~vThe~~~--fiyF~~g--~~aiLlfKt~ 102 (102)
T 1yo3_A 75 FGSYVTHETKN--FIYFYIG--QVAILLFKSG 102 (102)
T ss_dssp CCCEEESCCCE--EEEEEET--TEEEEEEECC
T ss_pred eeEEEEEeCCc--EEEEEEC--CEEEEEEecC
Confidence 44567888774 4777773 4789999987
No 187
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=20.52 E-value=1.5e+02 Score=21.20 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHhh
Q 031013 137 IVITGAKVRDETYTAFENIYPVLTEF 162 (167)
Q Consensus 137 vvitGaks~e~~~~a~~~i~~~L~~~ 162 (167)
|.|+| +.+.+..|...|+..+.+.
T Consensus 51 v~I~G--~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 51 VIITG--PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHHHHT
T ss_pred EEEEc--CHHHHHHHHHHHHHHHhcc
Confidence 78888 6788999999999887754
No 188
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=20.44 E-value=1.2e+02 Score=22.22 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=20.8
Q ss_pred ceEEEEccCCHHHHHHHHHHHHHHHHh
Q 031013 135 GKIVITGAKVRDETYTAFENIYPVLTE 161 (167)
Q Consensus 135 GKvvitGaks~e~~~~a~~~i~~~L~~ 161 (167)
+.|.|+|.. +.+..|...|...|.+
T Consensus 151 ~~v~I~G~~--~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 151 RVVTVSGEP--EQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEEEEESSH--HHHHHHHHHHHHHHHS
T ss_pred eEEEEEcCH--HHHHHHHHHHHHHHHh
Confidence 689999975 6899999988888764
No 189
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=20.39 E-value=72 Score=24.01 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=24.2
Q ss_pred EEEEEecCceEEE--EccCCHHHHHHHHHHHH
Q 031013 127 IVLLIFVSGKIVI--TGAKVRDETYTAFENIY 156 (167)
Q Consensus 127 ~t~lIF~SGKvvi--tGaks~e~~~~a~~~i~ 156 (167)
.+++|-.+|+|+- .|..+.+++.+.++.++
T Consensus 175 ~tflID~~G~i~~~~~g~~~~~~l~~~I~~ll 206 (208)
T 2f8a_A 175 EKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 206 (208)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEEcCCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 5899999999964 57888888888877654
No 190
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=20.20 E-value=59 Score=22.68 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=13.9
Q ss_pred eeccCCCCeEEEEEcCCeEEEEEecCc
Q 031013 109 SYEPELFPGLIYRMKQPKIVLLIFVSG 135 (167)
Q Consensus 109 ~YePE~fPglv~R~~~pk~t~lIF~SG 135 (167)
.-.||.|||-- ..--.||.||
T Consensus 18 ivspekfpgrs------stnhsi~vsg 38 (113)
T 2hdi_B 18 IVSPEKFPGRS------STNHSIVVSG 38 (113)
T ss_dssp HHCTTTSCEEE------EEEEEEEECS
T ss_pred eeCcccCCCCC------CCCceEEEcC
Confidence 45699999963 2334577775
No 191
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=20.01 E-value=71 Score=21.27 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=19.5
Q ss_pred EEEEecC----ceEE--EEccCCHHHHHHHHHHHHH
Q 031013 128 VLLIFVS----GKIV--ITGAKVRDETYTAFENIYP 157 (167)
Q Consensus 128 t~lIF~S----GKvv--itGaks~e~~~~a~~~i~~ 157 (167)
++.+|.. |+++ ++|..+. ++++.+++..+
T Consensus 79 t~~~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~~~ 113 (118)
T 2f51_A 79 ALFFVKKEGNEIKTLDQFVGADVS-RIKADIEKFKH 113 (118)
T ss_dssp EEEEEEEETTEEEEEEEEESCCHH-HHHHHHHHHC-
T ss_pred EEEEEeCCCCcceEEEeecCCCHH-HHHHHHHHhhh
Confidence 4556666 8884 8888875 58887776543
Done!