BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031014
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QQY|A Chain A, Crystal Structure Of A Novel Laglidadg Homing
Endonuclease, I-Onui (From Ophiostoma Novo-Ulmi Subsp.
Americana)
Length = 307
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 22 MEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQQKLIW 81
+ DE+++ F + K + ++ + +++ F +G E F +L + S+
Sbjct: 146 LTDELKKAFPEIISKERSLINKNIPNFKWLAGFTSG-----EGCFFVNLIKSKSKL---- 196
Query: 82 NGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMEN 118
G +V F T++ KD N +N G G+IK +N
Sbjct: 197 -GVQVQLVFSITQHIKDKNLMNSLITYLGCGYIKEKN 232
>pdb|2W3J|A Chain A, Structure Of A Family 35 Carbohydrate Binding Module From
An Environmental Isolate
Length = 145
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 103 NKDHHTTGTGFIKMENANGKSFI 125
NK TGTGFI ENA G S +
Sbjct: 20 NKHAGYTGTGFIDTENAVGASIV 42
>pdb|3LAG|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Rpa4178 From Rhodopseudomonas Palustris Cga009
pdb|3LAG|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Rpa4178 From Rhodopseudomonas Palustris Cga009
Length = 98
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 106 HHTTGTGFIKMENANGKSFILAPDN 130
HHT G ++ + A+G+ I+APD
Sbjct: 32 HHTHGXDYVVVPXADGEXTIVAPDG 56
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 39 TKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQQKLIWNGSEVTEEFQETEYYKD 98
T + D S +D + N +N+ F + + ++ K+I E T+ F++ Y +
Sbjct: 26 TYLNQFDQSFLLIDEYVNQYFANK----FDDILSYENVHKVIIPAGEKTKTFEQ--YQET 79
Query: 99 LNRINKDHHTTGT--------------GFIKMENANGKSFILAPDNDDAHHSSCKGNPAT 144
L I H T T GF+ G FI P AH SS G
Sbjct: 80 LEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGI 139
Query: 145 N 145
N
Sbjct: 140 N 140
>pdb|2AP3|A Chain A, 1.6 A Crystal Structure Of A Conserved Protein Of Unknown
Function From Staphylococcus Aureus
Length = 199
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 8 DRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQF 67
D D + R+E +++D ++E + K H SDY+ Y A N E + F
Sbjct: 104 DNIDNDVKRKEVKQLDDVLKEKY-----KLH-----SDYAKAYKKAV------NSEKTLF 147
Query: 68 QHLQANDSQQKLIWNGSEVTEE----FQET--EYYKDLNRINKDHH 107
++L ND+ Q+ + S+ E+ +E +Y K LN++ K+
Sbjct: 148 KYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,758,845
Number of Sequences: 62578
Number of extensions: 243166
Number of successful extensions: 436
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 25
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)