BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031014
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P3A9|YIL5_SCHPO Uncharacterized protein C1565.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1565.05 PE=4 SV=1
Length = 773
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 70 LQANDSQQKLIWNGSEVTEEFQETEYYKDLN--RINKDHHTTGTGFIKMENANGKSFILA 127
L++N + L+W +++ EE + Y+D++ +I H + TG + + NGK L
Sbjct: 95 LKSNGEWKILLWKFNDLEEESEVV--YRDISNQQIFALHFISSTGQLVIVFRNGKIAFLD 152
Query: 128 PDNDDAHHSSCKGNPAT---NEWIPS 150
P++D H S+ AT + ++PS
Sbjct: 153 PEDDKVHMSASVNESATLLQSMYVPS 178
>sp|Q71ZG6|SYA_LISMF Alanine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=alaS PE=3 SV=1
Length = 879
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 57 GSDSNQEYSQFQHLQANDSQQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKM 116
G +S + S+ +L +D+ + + GSE F+ET +Y + D T +
Sbjct: 461 GYNSTEHVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKGT-------I 513
Query: 117 ENANGKSFI----LAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 167
E+ G +++ AP+ + H S K E + D+V + DK KR E
Sbjct: 514 ESETGLAYVEDVQKAPNKQNLHRISVK------EGVLKTGDTVKLAVDKVKRRET 562
>sp|Q8Y722|SYA_LISMO Alanine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=alaS PE=3 SV=1
Length = 879
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 57 GSDSNQEYSQFQHLQANDSQQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKM 116
G +S + S+ +L ND+ + G+E F+ET +Y + D T +
Sbjct: 461 GYNSTEHVSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGT-------I 513
Query: 117 ENANGKSFI----LAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 167
E+ G +++ AP+ + H S K E + D+V + DK KR E
Sbjct: 514 ESETGLAYVEDVQKAPNKQNLHRISVK------EGVLKTGDTVKLAVDKVKRRET 562
>sp|Q92BK9|SYA_LISIN Alanine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=alaS PE=3 SV=1
Length = 879
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 57 GSDSNQEYSQFQHLQANDSQQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKM 116
G ++ + S+ +L +D+ + +GSE F+ET +Y + D T +
Sbjct: 461 GYNTTEHVSEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQVADKGT-------I 513
Query: 117 ENANGKSFI----LAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 167
E+ G +++ AP+ + H S K E + D+V + DK KR E
Sbjct: 514 ESETGVAYVEDVQKAPNKQNLHRISVK------EGVLKTGDTVKLAVDKVKRRET 562
>sp|P0CL10|PDHR_SALTY Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=pdhR PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|E1W823|PDHR_SALTS Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
(strain SL1344) GN=pdhR PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0A2S3|PDHR_SALTI Pyruvate dehydrogenase complex repressor OS=Salmonella typhi
GN=pdhR PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0ACL9|PDHR_ECOLI Pyruvate dehydrogenase complex repressor OS=Escherichia coli
(strain K12) GN=pdhR PE=1 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0ACM0|PDHR_ECOL6 Pyruvate dehydrogenase complex repressor OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=pdhR PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0ACM1|PDHR_ECO57 Pyruvate dehydrogenase complex repressor OS=Escherichia coli
O157:H7 GN=pdhR PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo
sapiens GN=TRRAP PE=1 SV=3
Length = 3859
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 10 SDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQH 69
+DV+ E + KM EV ENFEN+ + PQ S + + F + + + Q
Sbjct: 29 TDVNTPDETKLKMMQEVSENFENVT----SSPQYSTFLEHIIPRFL----TFLQDGEVQF 80
Query: 70 LQANDSQQ 77
LQ +QQ
Sbjct: 81 LQEKPAQQ 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,043,929
Number of Sequences: 539616
Number of extensions: 2939352
Number of successful extensions: 6947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 6928
Number of HSP's gapped (non-prelim): 71
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)