Query 031014
Match_columns 167
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 12:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031014.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031014hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 36.1 2.5 0.00018 32.0 -0.9 19 95-113 147-165 (176)
2 d2i9wa2 g.74.1.1 (A:1-39) Hypo 19.1 18 0.0013 21.4 1.0 12 136-147 8-19 (39)
3 d2gf3a2 d.16.1.3 (A:218-321) S 18.6 67 0.0049 20.5 4.0 30 7-36 60-91 (104)
4 d1iz6a1 b.34.5.2 (A:2-70) Euka 17.3 40 0.0029 21.0 2.5 31 101-131 26-62 (69)
5 d1u2fa_ d.58.7.1 (A:) Splicing 17.1 87 0.0064 18.8 4.1 25 108-132 47-71 (90)
6 d1zfoa_ g.39.1.4 (A:) LASP-1 { 17.1 19 0.0014 20.4 0.7 11 98-108 17-27 (30)
7 d1jqia2 e.6.1.1 (A:4-234) Buty 15.7 57 0.0042 22.8 3.3 24 12-36 5-29 (231)
8 d2ejqa1 d.92.1.17 (A:2-108) Un 15.5 27 0.002 23.7 1.4 26 9-34 79-104 (107)
9 d1mjca_ b.40.4.5 (A:) Major co 15.3 31 0.0023 21.4 1.5 21 107-128 13-33 (69)
10 d1eexg_ a.23.2.1 (G:) Diol deh 15.1 53 0.0038 23.9 3.0 24 5-32 90-113 (137)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=36.11 E-value=2.5 Score=31.96 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=14.5
Q ss_pred hhccccccccCccCCCccc
Q 031014 95 YYKDLNRINKDHHTTGTGF 113 (167)
Q Consensus 95 YYkdL~~IDKqHHTTGtGF 113 (167)
.+++|-.-=|+|||||--+
T Consensus 147 ~l~~L~~YVkehhttGl~W 165 (176)
T d1s0pa_ 147 FLKDLEKYIKQYHTTGLTW 165 (176)
T ss_dssp HHHHHHHHHHHHSTTSCCC
T ss_pred HHHHHHHHHHHhCCCCCcc
Confidence 3566666779999999765
No 2
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=19.15 E-value=18 Score=21.37 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=10.0
Q ss_pred cccccCCCCCCC
Q 031014 136 SSCKGNPATNEW 147 (167)
Q Consensus 136 ~s~k~NPATNDW 147 (167)
-.|..|||.|+-
T Consensus 8 cpcq~np~~~~i 19 (39)
T d2i9wa2 8 CPCQINPALNAV 19 (39)
T ss_dssp CGGGCCTTCCCS
T ss_pred cccccCcccccc
Confidence 579999999873
No 3
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=18.62 E-value=67 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCCCcc--CCCHHHHHHHHHHHHHhhhhcCCC
Q 031014 7 PDRSDV--HLSREEEAKMEDEVRENFENLAPK 36 (167)
Q Consensus 7 P~RSD~--~l~~Eeq~~i~~evR~~Fd~~APK 36 (167)
|.+-|. ..++++.+++.+-|+.||=++.|.
T Consensus 60 Pd~~dr~~~~~~~~~~~l~~~v~~~~Pgl~~~ 91 (104)
T d2gf3a2 60 PDTINREFGVYPEDESNLRAFLEEYMPGANGE 91 (104)
T ss_dssp TTTCCCCTTSSHHHHHHHHHHHHHHCGGGCSC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHCCCCCCC
Confidence 555444 467888999999999999988764
No 4
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.29 E-value=40 Score=20.96 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=21.7
Q ss_pred ccccCccCCCc-c--ceEeec---cCCceeEeecCCC
Q 031014 101 RINKDHHTTGT-G--FIKMEN---ANGKSFILAPDND 131 (167)
Q Consensus 101 ~IDKqHHTTGt-G--FIKve~---~~g~~f~l~~~~~ 131 (167)
.+|-+|+++|. | |+++.- ..|.-+.......
T Consensus 26 V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~ 62 (69)
T d1iz6a1 26 IVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 62 (69)
T ss_dssp EEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred EEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCC
Confidence 56778999886 5 888875 4566666665544
No 5
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.07 E-value=87 Score=18.81 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=16.9
Q ss_pred CCCccceEeeccCCceeEeecCCCC
Q 031014 108 TTGTGFIKMENANGKSFILAPDNDD 132 (167)
Q Consensus 108 TTGtGFIKve~~~g~~f~l~~~~~~ 132 (167)
..|.|||..........-|+.+...
T Consensus 47 ~kg~afV~f~~~e~a~~a~~l~g~~ 71 (90)
T d1u2fa_ 47 DKNFAFLEFRSVDETTQAMAFDGII 71 (90)
T ss_dssp TTTEEEEEESSCTTTTTGGGGSSCC
T ss_pred CceEEEEEeCCHHHHHHHHhhCCcE
Confidence 3588999988766644456665555
No 6
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=17.05 E-value=19 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=9.3
Q ss_pred cccccccCccC
Q 031014 98 DLNRINKDHHT 108 (167)
Q Consensus 98 dL~~IDKqHHT 108 (167)
.|+||||--|-
T Consensus 17 kl~ClDk~WHK 27 (30)
T d1zfoa_ 17 KVNCLDKFWHK 27 (30)
T ss_dssp CCCSSSSCCCG
T ss_pred HhhhhHHHHhh
Confidence 69999998775
No 7
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.71 E-value=57 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred cCCCHHHHHHHHHHHHHhhhh-cCCC
Q 031014 12 VHLSREEEAKMEDEVRENFEN-LAPK 36 (167)
Q Consensus 12 ~~l~~Eeq~~i~~evR~~Fd~-~APK 36 (167)
.-|+ |||..+.+.+|+|.+. ++|.
T Consensus 5 ~~L~-ee~~~l~~~~r~f~~~~i~p~ 29 (231)
T d1jqia2 5 VELP-ETHQMLRQTCRDFAEKELVPI 29 (231)
T ss_dssp SCCC-HHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCC-HHHHHHHHHHHHHHHHhChHH
Confidence 4466 7778899999999986 5653
No 8
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227 {Thermus thermophilus [TaxId: 274]}
Probab=15.50 E-value=27 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=20.0
Q ss_pred CCccCCCHHHHHHHHHHHHHhhhhcC
Q 031014 9 RSDVHLSREEEAKMEDEVRENFENLA 34 (167)
Q Consensus 9 RSD~~l~~Eeq~~i~~evR~~Fd~~A 34 (167)
++.+-|..+-...+--||..||++||
T Consensus 79 ~~~e~l~eeV~~tvvHEigHhf~~l~ 104 (107)
T d2ejqa1 79 GEGFDWEAEVWETMLHELRHHLESLA 104 (107)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45566766666677889999999987
No 9
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=31 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=13.7
Q ss_pred cCCCccceEeeccCCceeEeec
Q 031014 107 HTTGTGFIKMENANGKSFILAP 128 (167)
Q Consensus 107 HTTGtGFIKve~~~g~~f~l~~ 128 (167)
+.-|.|||..+. +|..+=+..
T Consensus 13 ~~kGfGFI~~d~-g~~diFvH~ 33 (69)
T d1mjca_ 13 ADKGFGFITPDD-GSKDVFVHF 33 (69)
T ss_dssp TTTTEEEEEETT-SCCCEEEEG
T ss_pred CCCCEEEEEEcC-CCccEEEEh
Confidence 578999998774 444444433
No 10
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=15.12 E-value=53 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.2
Q ss_pred CCCCCCccCCCHHHHHHHHHHHHHhhhh
Q 031014 5 RRPDRSDVHLSREEEAKMEDEVRENFEN 32 (167)
Q Consensus 5 ~rP~RSD~~l~~Eeq~~i~~evR~~Fd~ 32 (167)
-||.|| +.+|-..|+++++.-|.+
T Consensus 90 LRP~RS----tk~ELl~iA~eL~~~Y~A 113 (137)
T d1eexg_ 90 LRPYRS----TKEELLAIADDLESRYQA 113 (137)
T ss_dssp HSTTSC----CHHHHHHHHHHHHHHHCC
T ss_pred hCCCcc----hHHHHHHHHHHHHHHhCc
Confidence 489998 679999999999987653
Done!