BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031015
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFH|A Chain A, Solution Structrue Of The Zf-An1 Domain From Arabidopsis
           Thaliana At2g36320 Protein
          Length = 64

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 106 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKVG 148
           NRC+VCRKR+GLTGF CRCGT FCG+HRYPE HGC+FDFK  G
Sbjct: 16  NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAG 58


>pdb|1WG2|A Chain A, Solution Structure Of Zf-An1 Domain From Arabidopsis
           Thaliana
          Length = 64

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query: 106 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKVG 148
           NRC  C K++G+ GFKC+CG+ FCG+HRYPEKH CSFDFK+VG
Sbjct: 16  NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVG 58


>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis
           Thaliana F5o11.17 Protein
          Length = 74

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 106 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKV 147
            RC  C K++G+TGFKCRCG+ FCGTHRYPE H C FDFK V
Sbjct: 26  TRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGV 67


>pdb|1WFL|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Zinc
           Finger Protein 216
          Length = 74

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 106 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFK 145
           NRC +CRK++GLTGF CRCG +FCG HRY +KH C +D+K
Sbjct: 26  NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65


>pdb|1WFF|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Riken
           Cdna 2810002d23 Protein
          Length = 85

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 108 CSVCRKRIGL-TGFKCRCGTIFCGTHRYPEKHGCSFDFKKVGREEIARANPL 158
           C +C K+ GL T F+CRCG  FC +HRY E HGC++D+K  GR  +  ANP+
Sbjct: 28  CFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPV 79


>pdb|1X4W|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
           Hypothetical Protein Flj13222
          Length = 67

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 106 NRCSVCRKRIGLTGFK---CRCGTIFCGTHRYPEKHGCSFD 143
            RC  C+ ++ L   +   CRCG +FC  HR PE+H C+FD
Sbjct: 16  RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFD 56


>pdb|2KZY|A Chain A, Solution Nmr Structure Of The Znf216 A20 Zinc Finger
 pdb|2L00|A Chain A, Solution Structure Of The Non-Covalent Complex Of The
          Znf216 A20 Domain With Ubiquitin
          Length = 62

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 12 GHRLCANNCGFFGSTATMNLCSKCYRDHCLKEQQQASIK 50
          G  LC+  CGF+G+  T  +CS CY++H  ++Q    + 
Sbjct: 12 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMS 50


>pdb|2FID|B Chain B, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
          With Ubiquitin
 pdb|2FIF|B Chain B, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
          With Ubiquitin
 pdb|2FIF|D Chain D, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
          With Ubiquitin
 pdb|2FIF|F Chain F, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
          With Ubiquitin
          Length = 70

 Score = 35.0 bits (79), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 15 LCANNCGFFGSTATMNLCSKCYRDHCLKEQQQ 46
          LC   CG++G+ A    CSKC+R+   K +Q+
Sbjct: 15 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQK 46


>pdb|2C7M|A Chain A, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|A Chain A, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|C Chain C, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|E Chain E, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|G Chain G, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|I Chain I, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
 pdb|2C7N|K Chain K, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
          Length = 74

 Score = 35.0 bits (79), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 15 LCANNCGFFGSTATMNLCSKCYRDHCLKEQQQ 46
          LC   CG++G+ A    CSKC+R+   K +Q+
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQK 49


>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
 pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
          Length = 516

 Score = 27.3 bits (59), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 128 FCGTHRYPEKHGCSFDFKKVGREEIARANPLIKAE 162
           F G H   +  GC++   + GR E  R + L+K E
Sbjct: 476 FAGEHTIXDGAGCAYGAWESGRREATRISDLLKLE 510


>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
 pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
          Length = 516

 Score = 26.9 bits (58), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 128 FCGTHRYPEKHGCSFDFKKVGREEIARANPLIKAE 162
           F G H   +  GC++   + GR E  R + L+K E
Sbjct: 476 FAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510


>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
 pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
 pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
 pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
           Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
           Methylated Spermine
 pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
           Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
           Methylated Spermine
 pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
           Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
           Methylated Spermine
 pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
           Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
           Methylated Spermine
 pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
 pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
 pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
 pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
 pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
           S-n1-acmespermidine
 pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
           S-n1-acmespermidine
 pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
           S-Bz-Mespermidine
 pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
           S-Bz-Mespermidine
 pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
           R-Bz-Mespermidine
 pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
           R-Bz-Mespermidine
          Length = 516

 Score = 26.9 bits (58), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 128 FCGTHRYPEKHGCSFDFKKVGREEIARANPLIKAE 162
           F G H   +  GC++   + GR E  R + L+K E
Sbjct: 476 FAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510


>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
 pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
 pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
 pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
 pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
 pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
          Length = 513

 Score = 26.9 bits (58), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 128 FCGTHRYPEKHGCSFDFKKVGREEIARANPLIKAE 162
           F G H   +  GC++   + GR E  R + L+K E
Sbjct: 476 FAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510


>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
 pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
          Length = 516

 Score = 26.9 bits (58), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 128 FCGTHRYPEKHGCSFDFKKVGREEIARANPLIKAE 162
           F G H   +  GC++   + GR E  R + L+K E
Sbjct: 476 FAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510


>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse
           Riken Cdna 2310008m20 Protein
          Length = 75

 Score = 26.2 bits (56), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 111 CRKRIGLTGFKCR-CGTIFCGTHRYPEKHGCS 141
           CR+R  L  F C  C  IFC  HR  + HGCS
Sbjct: 22  CRQRDFLP-FVCDGCSGIFCLEHRSKDSHGCS 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,420,921
Number of Sequences: 62578
Number of extensions: 136105
Number of successful extensions: 207
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 16
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)