Query 031017
Match_columns 167
No_of_seqs 169 out of 557
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.2 2E-11 6.8E-16 87.4 5.1 93 2-100 3-100 (101)
2 2dja_A Midline-2; tripartite m 95.1 0.012 4.1E-07 40.2 2.6 57 39-101 2-60 (84)
3 2ffw_A Midline-1; B-BOX, ring 94.6 0.02 6.8E-07 39.4 2.7 43 2-44 30-75 (78)
4 3ddt_A E3 ubiquitin-protein li 93.9 0.024 8.3E-07 34.9 1.7 41 54-100 6-47 (48)
5 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.017 5.7E-07 40.5 0.9 43 55-97 4-49 (101)
6 2yvr_A Transcription intermedi 93.7 0.022 7.6E-07 35.3 1.3 41 55-101 7-47 (50)
7 2did_A Tripartite motif protei 93.4 0.052 1.8E-06 34.0 2.7 40 55-101 9-49 (53)
8 1fre_A Nuclear factor XNF7; zi 93.0 0.051 1.8E-06 32.4 2.1 29 56-85 5-34 (42)
9 2d8u_A Ubiquitin ligase TRIM63 92.6 0.045 1.5E-06 35.4 1.5 42 54-101 8-50 (64)
10 2yrg_A Tripartite motif-contai 91.6 0.078 2.7E-06 34.3 1.8 41 55-102 15-56 (59)
11 2csv_A Tripartite motif protei 89.9 0.15 5.2E-06 33.8 2.1 41 54-101 18-58 (72)
12 2did_A Tripartite motif protei 86.6 0.52 1.8E-05 29.3 2.9 41 3-50 9-50 (53)
13 2egm_A Tripartite motif-contai 86.2 0.11 3.9E-06 33.3 -0.5 31 54-85 18-49 (57)
14 2ffw_A Midline-1; B-BOX, ring 83.1 0.27 9.2E-06 33.5 0.3 43 54-96 30-75 (78)
15 2yvr_A Transcription intermedi 82.6 1 3.4E-05 27.5 2.8 41 3-49 7-47 (50)
16 2yrg_A Tripartite motif-contai 82.1 1.1 3.8E-05 28.7 3.0 40 4-50 16-56 (59)
17 3ddt_A E3 ubiquitin-protein li 77.0 1.8 6.3E-05 26.1 2.7 37 5-47 9-46 (48)
18 2dja_A Midline-2; tripartite m 76.5 1.8 6.2E-05 29.0 2.8 41 4-50 20-61 (84)
19 2d8u_A Ubiquitin ligase TRIM63 75.4 1.4 4.9E-05 28.0 1.9 42 3-50 9-51 (64)
20 1fre_A Nuclear factor XNF7; zi 74.2 1.1 3.8E-05 26.3 1.1 30 4-34 5-35 (42)
21 2d8v_A Zinc finger FYVE domain 68.0 1.9 6.3E-05 29.3 1.2 45 53-99 7-52 (67)
22 2egm_A Tripartite motif-contai 67.5 2.7 9.3E-05 26.6 1.9 30 4-34 20-50 (57)
23 2csv_A Tripartite motif protei 65.1 3 0.0001 27.3 1.8 40 3-49 19-58 (72)
24 4hc9_A Trans-acting T-cell-spe 61.6 3.8 0.00013 30.1 1.9 80 2-82 5-88 (115)
25 2d8v_A Zinc finger FYVE domain 60.2 8.1 0.00028 26.1 3.2 45 3-49 9-54 (67)
26 2jne_A Hypothetical protein YF 57.1 9.2 0.00031 27.8 3.3 26 1-30 31-56 (101)
27 2lri_C Autoimmune regulator; Z 57.0 4.1 0.00014 26.9 1.3 47 3-63 13-59 (66)
28 1f62_A Transcription factor WS 54.2 6.6 0.00023 23.9 1.9 48 4-62 2-49 (51)
29 3pfq_A PKC-B, PKC-beta, protei 52.6 7.6 0.00026 35.4 2.8 75 4-89 50-145 (674)
30 1z60_A TFIIH basal transcripti 52.5 3.7 0.00013 27.0 0.5 31 5-35 18-51 (59)
31 2jrp_A Putative cytoplasmic pr 52.2 20 0.00069 24.9 4.3 59 1-84 1-61 (81)
32 2fc7_A ZZZ3 protein; structure 52.2 24 0.00083 24.1 4.7 43 56-98 23-72 (82)
33 1mm2_A MI2-beta; PHD, zinc fin 51.2 15 0.00052 23.4 3.4 48 3-64 10-57 (61)
34 2yql_A PHD finger protein 21A; 47.2 12 0.00042 23.4 2.3 46 3-62 10-55 (56)
35 4gne_A Histone-lysine N-methyl 38.5 42 0.0014 24.1 4.4 64 3-83 16-86 (107)
36 1v5n_A PDI-like hypothetical p 37.9 20 0.00068 24.7 2.5 41 42-88 35-75 (89)
37 2pv0_B DNA (cytosine-5)-methyl 37.7 16 0.00055 32.1 2.3 70 2-81 50-122 (386)
38 3shb_A E3 ubiquitin-protein li 37.2 25 0.00084 23.8 2.8 14 21-34 40-53 (77)
39 2xzl_A ATP-dependent helicase 36.1 11 0.00038 35.5 1.2 81 3-83 12-107 (802)
40 1tot_A CREB-binding protein; z 36.0 12 0.00041 23.5 1.0 30 2-31 6-37 (52)
41 2e6r_A Jumonji/ARID domain-con 36.0 21 0.00072 24.7 2.3 49 3-62 17-65 (92)
42 1xwh_A Autoimmune regulator; P 34.4 22 0.00076 22.9 2.1 47 3-63 9-55 (66)
43 2kwj_A Zinc finger protein DPF 33.3 22 0.00077 25.3 2.2 48 4-62 60-107 (114)
44 2wjy_A Regulator of nonsense t 32.5 15 0.0005 34.7 1.3 80 2-81 6-100 (800)
45 2epr_A POZ-, at HOOK-, and zin 32.5 7.8 0.00027 22.1 -0.4 37 21-61 11-47 (48)
46 2lbm_A Transcriptional regulat 32.3 45 0.0015 25.2 3.8 29 54-82 63-91 (142)
47 1qxf_A GR2, 30S ribosomal prot 32.0 12 0.00041 25.2 0.5 31 1-32 6-36 (66)
48 3u5c_b RP61, YS20, 40S ribosom 29.8 18 0.0006 25.3 1.0 30 1-31 33-62 (82)
49 2fc7_A ZZZ3 protein; structure 29.5 74 0.0025 21.6 4.2 32 2-33 21-59 (82)
50 3asl_A E3 ubiquitin-protein li 29.2 43 0.0015 21.9 2.9 15 20-34 31-45 (70)
51 2puy_A PHD finger protein 21A; 28.9 35 0.0012 21.4 2.3 48 2-63 5-52 (60)
52 2yqq_A Zinc finger HIT domain- 28.8 36 0.0012 21.9 2.4 23 55-78 13-35 (56)
53 3j20_W 30S ribosomal protein S 28.8 15 0.00051 24.5 0.5 31 1-32 14-44 (63)
54 1fp0_A KAP-1 corepressor; PHD 28.4 43 0.0015 23.3 2.9 47 3-63 26-72 (88)
55 2xzm_6 RPS27E; ribosome, trans 27.7 15 0.00052 25.6 0.4 30 1-31 31-60 (81)
56 2e6s_A E3 ubiquitin-protein li 27.4 49 0.0017 22.2 3.0 14 21-34 40-53 (77)
57 3a1b_A DNA (cytosine-5)-methyl 27.3 43 0.0015 26.0 2.9 70 2-81 36-108 (159)
58 3iz6_X 40S ribosomal protein S 26.2 18 0.00061 25.5 0.5 30 1-31 35-64 (86)
59 2ro1_A Transcription intermedi 25.7 52 0.0018 25.4 3.2 48 3-64 3-50 (189)
60 3v43_A Histone acetyltransfera 25.5 55 0.0019 23.1 3.1 35 21-61 76-110 (112)
61 1faq_A RAF-1; transferase, ser 25.0 25 0.00086 21.1 1.0 25 3-34 15-39 (52)
62 1x4s_A Protein FON, zinc finge 24.7 23 0.00079 23.2 0.8 30 4-34 13-46 (59)
63 2ysm_A Myeloid/lymphoid or mix 24.5 38 0.0013 23.6 2.1 14 21-34 68-81 (111)
64 2le2_A P56; UDG inhibition, DN 23.1 13 0.00045 23.8 -0.6 23 143-165 23-50 (56)
65 2ytg_A ZFP-95, zinc finger pro 21.9 26 0.00089 19.3 0.6 26 21-47 11-36 (46)
66 2k0a_A PRE-mRNA-splicing facto 21.5 22 0.00075 26.1 0.3 23 54-81 57-79 (109)
67 2epq_A POZ-, at HOOK-, and zin 21.1 10 0.00035 21.0 -1.3 37 21-61 9-45 (45)
68 2dip_A Zinc finger SWIM domain 20.5 64 0.0022 22.7 2.6 28 3-30 32-63 (98)
69 2yt5_A Metal-response element- 20.4 38 0.0013 21.4 1.2 29 3-34 7-35 (66)
70 2e5r_A Dystrobrevin alpha; ZZ 20.4 1E+02 0.0034 19.8 3.3 30 3-32 12-45 (63)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=87.45 Aligned_cols=93 Identities=23% Similarity=0.446 Sum_probs=77.8
Q ss_pred CccccccCC---CCeEEEecccccccchhhchhcccCcccccCceec-eecccCCCCCCCcccccCceEEEecCCccccc
Q 031017 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC 77 (167)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~~~Cd~C~~~pA~v~C~~d~a~LC 77 (167)
+..|++|.+ .+|+.+|..+.+.||..|...+|..++.+++|.++ |+...+.....|+.|+.++..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 467999984 68999999999999999999999988888999987 56544445678999998889999999999999
Q ss_pred cccCC-CCCCCCCCCCCCcceeec
Q 031017 78 KDCDE-PIHSPGSLSANHQRFLAT 100 (167)
Q Consensus 78 ~~CD~-~iH~an~ls~~HqRv~l~ 100 (167)
..|.. ..| +.|..++|+
T Consensus 83 ~~C~~~~~H------~~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRH------RDHQVAALS 100 (101)
T ss_dssp HHHHHHTTT------SSSCBCCCC
T ss_pred hhcCCCCCc------CCCCeecCC
Confidence 99986 677 457666553
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=95.10 E-value=0.012 Score=40.21 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=41.4
Q ss_pred ccCceeceeccc-CCCCCCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017 39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (167)
Q Consensus 39 a~rH~RvpL~~~-~~~~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~ 101 (167)
+.+|..+.-... ......|+.|+..+-.+||..|...+|..|.. .-| +.|..++|+.
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 60 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLND 60 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHH
Confidence 356776654331 22355799998888999999999999999986 566 4576666654
No 3
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=94.63 E-value=0.02 Score=39.36 Aligned_cols=43 Identities=26% Similarity=0.583 Sum_probs=36.4
Q ss_pred CccccccCC---CCeEEEecccccccchhhchhcccCcccccCcee
Q 031017 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQR 44 (167)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~R 44 (167)
.+.||+|.+ .+|+..|..+.+.||..|=...|...+.+++|.=
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999986 6799999999999999998667987777788863
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=93.87 E-value=0.024 Score=34.95 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCCCcccccCceEEEecCCccccccccC-CCCCCCCCCCCCCcceeec
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT 100 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD-~~iH~an~ls~~HqRv~l~ 100 (167)
...|..|+.++..+||..|...+|..|. ...| +.|..++|+
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 4569999978889999999999999996 4566 457666653
No 5
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.77 E-value=0.017 Score=40.49 Aligned_cols=43 Identities=21% Similarity=0.526 Sum_probs=36.1
Q ss_pred CCCccccc---CceEEEecCCccccccccCCCCCCCCCCCCCCcce
Q 031017 55 PPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF 97 (167)
Q Consensus 55 ~~Cd~C~~---~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv 97 (167)
..|++|.+ .+|..+|..+...||..|...+|..++...+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 34999985 58999999999999999998888777666788765
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=93.74 E-value=0.022 Score=35.30 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=33.4
Q ss_pred CCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceeecc
Q 031017 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 101 (167)
Q Consensus 55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l~~ 101 (167)
..|+.|+.++..+||..|...+|..|....| +.|..++|+.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 3499998888999999999999999987656 4677776653
No 7
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.43 E-value=0.052 Score=34.02 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=32.2
Q ss_pred CCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (167)
Q Consensus 55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~ 101 (167)
..|+.|+ ++..+||..|...+|..|.. .-| +.|..++|+.
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 49 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG 49 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence 3599998 67899999999999999986 566 4677777653
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=92.95 E-value=0.051 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=24.5
Q ss_pred CCcccccCceEEEecCCccccccccCC-CCC
Q 031017 56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (167)
Q Consensus 56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH 85 (167)
.|+.|+ ++..+||..|...+|..|.. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 599997 66889999999999999986 455
No 9
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.58 E-value=0.045 Score=35.36 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=33.3
Q ss_pred CCCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~ 101 (167)
...|+.|+.++..+||..|...+|..|.. ..| +.|..++|+.
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~ 50 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQS 50 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTT
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHH
Confidence 34599998888999999999999999974 466 3577666654
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.57 E-value=0.078 Score=34.27 Aligned_cols=41 Identities=27% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecce
Q 031017 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (167)
Q Consensus 55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~i 102 (167)
..|..|+ ++..+||..|...+|..|.. .-| +.|..++|+..
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 3599997 56889999999999999986 555 46777776543
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=89.92 E-value=0.15 Score=33.77 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceeecc
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 101 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l~~ 101 (167)
...|+.|+ ++-.+||..|...+|..|...-| +.|..++|+.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 45699995 77899999999999999987556 4687777764
No 12
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=86.63 E-value=0.52 Score=29.27 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=31.0
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (167)
..|..-+ .+-.+||..|...+|..|-. .-| +.|..+||+++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 3566665 56789999999999999985 455 46777887554
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.22 E-value=0.11 Score=33.31 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.6
Q ss_pred CCCCcccccCceEEEecCCccccccccCC-CCC
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH 85 (167)
...|..|+ ++..+||..|...+|..|.. .-|
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 44599995 67899999999999999985 445
No 14
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=83.15 E-value=0.27 Score=33.55 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=34.6
Q ss_pred CCCCccccc---CceEEEecCCccccccccCCCCCCCCCCCCCCcc
Q 031017 54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96 (167)
Q Consensus 54 ~~~Cd~C~~---~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqR 96 (167)
...|++|.. .+|.-.|..+.+.||..|-...|...+...+|+-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 455999986 5789999999999999998777876666667754
No 15
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=82.57 E-value=1 Score=27.48 Aligned_cols=41 Identities=24% Similarity=0.638 Sum_probs=30.9
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (167)
..|..-...+-.+||..|...+|..|-..-| +.|..++|++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 3566664466789999999999999976555 4677777754
No 16
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.13 E-value=1.1 Score=28.66 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=30.0
Q ss_pred cccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (167)
.|..-+ .+-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 465555 46789999999999999985 455 46777777544
No 17
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=77.02 E-value=1.8 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=25.8
Q ss_pred ccccCCCCeEEEecccccccchhhc-hhcccCcccccCceecee
Q 031017 5 CDVCEKAPATVICCADEAALCAKCD-VEVHAANKLASKHQRLLL 47 (167)
Q Consensus 5 Cd~C~~~~A~vyC~aD~A~LC~~CD-~~vH~aN~la~rH~RvpL 47 (167)
|..=++.+-.+||..|...+|..|- ..-|. .|.-+||
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4443334577999999999999996 34564 4665665
No 18
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=76.48 E-value=1.8 Score=29.00 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=30.6
Q ss_pred cccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (167)
.|..-+..+-.+||..|...+|..|-. .-| +.|.-++|.++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 465554456789999999999999986 555 45777777554
No 19
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=75.37 E-value=1.4 Score=27.97 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=31.2
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (167)
..|..-...+-.+||..|...+|..|-. .-|. .|.-+||.++
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a 51 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSV 51 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHH
Confidence 3566664456788999999999999975 3563 5777888654
No 20
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=74.19 E-value=1.1 Score=26.28 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=23.0
Q ss_pred cccccCCCCeEEEecccccccchhhch-hccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~ 34 (167)
.|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 465555 56788999999999999975 4453
No 21
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.99 E-value=1.9 Score=29.33 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=36.1
Q ss_pred CCCCCcccccCceEEEecCC-ccccccccCCCCCCCCCCCCCCcceee
Q 031017 53 KLPPCDICQEKAAFIFCVED-RALFCKDCDEPIHSPGSLSANHQRFLA 99 (167)
Q Consensus 53 ~~~~Cd~C~~~pA~v~C~~d-~a~LC~~CD~~iH~an~ls~~HqRv~l 99 (167)
.++.|-+|.+. |.+.|..+ .-+||..|-...|.. .--+.|+-++.
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 47789999998 99999877 779999999999953 34567876664
No 22
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.48 E-value=2.7 Score=26.60 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=23.6
Q ss_pred cccccCCCCeEEEecccccccchhhch-hccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~ 34 (167)
.|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 466654 57889999999999999985 4554
No 23
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=65.10 E-value=3 Score=27.28 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=30.0
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (167)
..|..-+ .+-.+||..|...+|..|-..-| +.|.-++|.+
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 3466554 67789999999999999976555 4677777754
No 24
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=61.60 E-value=3.8 Score=30.09 Aligned_cols=80 Identities=18% Similarity=0.366 Sum_probs=48.6
Q ss_pred CccccccCCCCeEEEecccc-cccchhhc--hhcccCcccccCceeceecccCCCCCCCcccccCceEEEec-CCccccc
Q 031017 2 KIQCDVCEKAPATVICCADE-AALCAKCD--VEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV-EDRALFC 77 (167)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~pA~v~C~-~d~a~LC 77 (167)
...|..|+.....+|=..+. ..||..|. .+.|..|....+-.+.. .........|..|+......|-. .+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~-~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-SAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC-CCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc-cccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 46799999877666666554 47999999 45566665433322221 11222355699998886555432 2235788
Q ss_pred cccCC
Q 031017 78 KDCDE 82 (167)
Q Consensus 78 ~~CD~ 82 (167)
-.|..
T Consensus 84 NaCgl 88 (115)
T 4hc9_A 84 NACGL 88 (115)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88863
No 25
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.21 E-value=8.1 Score=26.14 Aligned_cols=45 Identities=29% Similarity=0.421 Sum_probs=36.8
Q ss_pred ccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCceeceecc
Q 031017 3 IQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQC 49 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (167)
+-|-+|.. -|++.|..+ .-.+|.+|=+..|. ..-.+.|+-+++..
T Consensus 9 pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 9 PWCCICNE-DATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHP 54 (67)
T ss_dssp SSCTTTCS-CCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCC
T ss_pred CeeEEeCC-CCeEEecCCCCceehHHHHHHHcc-chhhhccceeeccC
Confidence 45889996 499999987 56779999999996 45678999998853
No 26
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=57.13 E-value=9.2 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=15.1
Q ss_pred CCccccccCCCCeEEEecccccccchhhch
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (167)
|...|-.|+..-- + .+..+.|..|+.
T Consensus 31 M~~~CP~Cq~eL~--~--~g~~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHVLD--Q--DNGHARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSBEE--E--ETTEEEETTTCC
T ss_pred ccccCccCCCcce--e--cCCEEECccccc
Confidence 6677888875322 2 234445777764
No 27
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=56.98 E-value=4.1 Score=26.94 Aligned_cols=47 Identities=17% Similarity=0.370 Sum_probs=29.9
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccC
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (167)
..|.+|++. +...+|..|++..|.. - .+.+|...+.....|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~-----C-l~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWR-----C-HFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHH-----H-HCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecc-----c-CCCccCcCCCCCEECccccCC
Confidence 468888853 4466788899888852 1 133555555556667777654
No 28
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=54.19 E-value=6.6 Score=23.94 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=28.6
Q ss_pred cccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCccccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~ 62 (167)
.|.+|++.. ..+...+|..|++..|.. -+ ..+|.+.+.....|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~-----Cl-~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF-----CL-RPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH-----HH-CTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc-----cC-CCCcCCCCCCcEECcCccc
Confidence 588888643 234567788999888852 11 1244445544555776654
No 29
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=52.59 E-value=7.6 Score=35.35 Aligned_cols=75 Identities=19% Similarity=0.414 Sum_probs=21.8
Q ss_pred cccccCCCCeEEEecccccccchhhchhcccCcccccCceeceeccc---------------------CCCCCCCccccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCL---------------------SNKLPPCDICQE 62 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~---------------------~~~~~~Cd~C~~ 62 (167)
.|+.|+.--..+ .-...-|..|...+|. +.|..++.... -.....|+.|+.
T Consensus 50 ~C~~C~~~i~g~---~~qg~~C~~C~~~~H~-----~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~ 121 (674)
T 3pfq_A 50 FCSHCTDFIWGF---GKQGFQCQVCSFVVHK-----RCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGS 121 (674)
T ss_dssp ------------------------------------------------------------CCCCCEECCSSCCCCSSSCS
T ss_pred cccccccccccc---CCceeECCCCCCCcCh-----hhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCcccc
Confidence 588887643322 4456667888888875 23333333110 012346999977
Q ss_pred CceEEEecCCccccccccCCCCCCCCC
Q 031017 63 KAAFIFCVEDRALFCKDCDEPIHSPGS 89 (167)
Q Consensus 63 ~pA~v~C~~d~a~LC~~CD~~iH~an~ 89 (167)
.- +...-.-+-|..|...+|..+.
T Consensus 122 ~l---~g~~~qg~~C~~C~~~~H~~C~ 145 (674)
T 3pfq_A 122 LL---YGLIHQGMKCDTCMMNVHKRCV 145 (674)
T ss_dssp CC---BBSSSCEECCSSSCCCBCSSTT
T ss_pred cc---chhhcCccccccCCcchhhhhh
Confidence 63 3333345677777777777664
No 30
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.54 E-value=3.7 Score=26.95 Aligned_cols=31 Identities=29% Similarity=0.718 Sum_probs=24.2
Q ss_pred ccccCCCC---eEEEecccccccchhhchhcccC
Q 031017 5 CDVCEKAP---ATVICCADEAALCAKCDVEVHAA 35 (167)
Q Consensus 5 Cd~C~~~~---A~vyC~aD~A~LC~~CD~~vH~a 35 (167)
|-.|+..- .++.|..+...+|.+||.-+|..
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 66676632 24569999999999999999963
No 31
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.21 E-value=20 Score=24.90 Aligned_cols=59 Identities=25% Similarity=0.537 Sum_probs=35.0
Q ss_pred CCccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccCceEEEecCC--cccccc
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVED--RALFCK 78 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~pA~v~C~~d--~a~LC~ 78 (167)
|...|-.|+..... ...-+.|..|+..+- +..+ |+.|+..... |..+ ..+||.
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~----------~~af---------CPeCgq~Le~--lkACGA~~yFC~ 55 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFS----------LQAL---------CPDCRQPLQV--LKACGAVDYFCQ 55 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEE----------EEEE---------CSSSCSCCCE--EEETTEEEECCT
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCC----------Cccc---------CcchhhHHHH--HHhcCCcCeeec
Confidence 78889999865432 233455888875322 1123 7777777544 3333 257888
Q ss_pred ccCCCC
Q 031017 79 DCDEPI 84 (167)
Q Consensus 79 ~CD~~i 84 (167)
.|..-+
T Consensus 56 ~C~~Li 61 (81)
T 2jrp_A 56 NGHGLI 61 (81)
T ss_dssp TTTCCC
T ss_pred cCCCEe
Confidence 886444
No 32
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=52.20 E-value=24 Score=24.11 Aligned_cols=43 Identities=23% Similarity=0.473 Sum_probs=26.8
Q ss_pred CCcccccCceE---EEecCCcc----ccccccCCCCCCCCCCCCCCccee
Q 031017 56 PCDICQEKAAF---IFCVEDRA----LFCKDCDEPIHSPGSLSANHQRFL 98 (167)
Q Consensus 56 ~Cd~C~~~pA~---v~C~~d~a----~LC~~CD~~iH~an~ls~~HqRv~ 98 (167)
.|+.|+..+.. +.|..+.. -||..|-........-...|....
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~ 72 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEP 72 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEE
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEE
Confidence 49999987643 66877765 499999865443222223454433
No 33
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.18 E-value=15 Score=23.42 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=29.4
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccCc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~p 64 (167)
..|.+|+.. +.-.+|..|++..|.. -+ ..||.+++.....|..|...+
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~-----Cl-~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH-----CL-NPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS-----SS-SSCCSSCCSSCCCCTTTTTTC
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc-----cc-CCCcCcCCCCccCChhhcCch
Confidence 468888752 4567788999888853 11 124544555555577665543
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.20 E-value=12 Score=23.35 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=28.2
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCccccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~ 62 (167)
..|.+|+.. +...+|..|++..|.. -+ ..||...+.....|..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~-----Cl-~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD-----CL-DPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS-----SS-SSCCCSCCCSSCCCHHHHC
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc-----cC-CCCcCCCCCCceEChhhhC
Confidence 468888864 4566788999888853 11 1245445555555766643
No 35
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.47 E-value=42 Score=24.06 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=38.4
Q ss_pred ccccccCCCCeEEEecccccccch--hhchhcccCcccccCceeceecccCCCCCCCc-----ccccCceEEEecCCccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCA--KCDVEVHAANKLASKHQRLLLQCLSNKLPPCD-----ICQEKAAFIFCVEDRAL 75 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~--~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd-----~C~~~pA~v~C~~d~a~ 75 (167)
..|.+|+.. .+..+|. .|++-.|..= | -|...+.....|+ .|+.. +.++|..+-..
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~C-l-------~L~~~P~g~W~Cp~c~C~~C~k~-~~~~C~~Cp~s 78 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLLC-L-------NLTQPPYGKWECPWHQCDECSSA-AVSFCEFCPHS 78 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTGG-G-------TCSSCCSSCCCCGGGBCTTTCSB-CCEECSSSSCE
T ss_pred CCCCcCCCC--------CcEeEECCCCCCccccccc-C-------cCCcCCCCCEECCCCCCCcCCCC-CCcCcCCCCcc
Confidence 357777742 3455677 7888777521 1 1444454444455 55544 45788888888
Q ss_pred cccccCCC
Q 031017 76 FCKDCDEP 83 (167)
Q Consensus 76 LC~~CD~~ 83 (167)
||.+|-.+
T Consensus 79 fC~~c~~g 86 (107)
T 4gne_A 79 FCKDHEKG 86 (107)
T ss_dssp ECTTTCTT
T ss_pred hhhhccCC
Confidence 88887644
No 36
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=37.90 E-value=20 Score=24.72 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=26.6
Q ss_pred ceeceecccCCCCCCCcccccCceEEEecCCccccccccCCCCCCCC
Q 031017 42 HQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88 (167)
Q Consensus 42 H~RvpL~~~~~~~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an 88 (167)
|.+.||.-.......|+.|+... ....+.|..|+..+|..+
T Consensus 35 Hp~H~L~L~~~~~~~C~~C~~~~------~~~~Y~C~~C~f~lH~~C 75 (89)
T 1v5n_A 35 HEEHELELTRVQVYTCDKCEEEG------TIWSYHCDECDFDLHAKC 75 (89)
T ss_dssp TTTSCEEEECCSSCCCTTTSCCC------CSCEEECTTTCCCCCHHH
T ss_pred CCCCccEEeeCCCeEeCCCCCcC------CCcEEEcCCCCCeEcHHh
Confidence 33344543333345699999874 346788889998888554
No 37
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.68 E-value=16 Score=32.13 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=42.7
Q ss_pred CccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCceeceecccCCCCCCCcccccCceEEEec--CCcccccc
Q 031017 2 KIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (167)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~pA~v~C~--~d~a~LC~ 78 (167)
+..|-.|++.. .++..-- ...+|..|-...+..+..- .+-+ .-..|..|.+..-.+.|. .+...||.
T Consensus 50 e~~C~~CG~~~-~~~~HPl~~v~lC~~Ck~~y~~~~f~~--------D~DG-~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~ 119 (386)
T 2pv0_B 50 EDICICCGSLQ-VHTQHPLFEGGICAPCKDKFLDALFLY--------DDDG-YQSYCSICCSGETLLICGNPDCTRCYCF 119 (386)
T ss_dssp GGSBTTTCCSC-CCSBCSSBSSBCCHHHHHHHHTTTTCB--------CSSS-SBCSCTTTCCCSSCEECCSTTCCCEECH
T ss_pred cceeCCCCCcC-ccccCCCcCcchhhHHHHHHhccCccc--------CCCC-CcccceEcCCCCeEEEeCCCCCCcchHH
Confidence 45788888642 2222222 4667888877666654211 1111 123488998887777788 77777888
Q ss_pred ccC
Q 031017 79 DCD 81 (167)
Q Consensus 79 ~CD 81 (167)
.|-
T Consensus 120 ~Ci 122 (386)
T 2pv0_B 120 ECV 122 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 38
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=37.21 E-value=25 Score=23.79 Aligned_cols=14 Identities=29% Similarity=0.907 Sum_probs=8.9
Q ss_pred ccccchhhchhccc
Q 031017 21 EAALCAKCDVEVHA 34 (167)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (167)
...+|..|++..|.
T Consensus 40 ~ll~CD~C~~~yH~ 53 (77)
T 3shb_A 40 KQLMCDECDMAFHI 53 (77)
T ss_dssp GEEECTTTCCEEET
T ss_pred ceeEeCCCCCccCc
Confidence 44567777766664
No 39
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.12 E-value=11 Score=35.50 Aligned_cols=81 Identities=21% Similarity=0.451 Sum_probs=53.9
Q ss_pred ccccccCCC--CeEEEecccccccchhhchh--cccCccc-ccCceeceeccc---CCCCCCCcccccCceEEEec----
Q 031017 3 IQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKL-ASKHQRLLLQCL---SNKLPPCDICQEKAAFIFCV---- 70 (167)
Q Consensus 3 ~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~~--vH~aN~l-a~rH~RvpL~~~---~~~~~~Cd~C~~~pA~v~C~---- 70 (167)
+.|.+|+-. ..++.|..+.-.||..=+.. -|--|-| .+||.=|-|.+- +-....|-.|+....+....
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~~ 91 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAK 91 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC--
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeecc
Confidence 579999985 68889999999999854422 2333333 458888887532 23466699999997765542
Q ss_pred CC--ccccccc-cCCC
Q 031017 71 ED--RALFCKD-CDEP 83 (167)
Q Consensus 71 ~d--~a~LC~~-CD~~ 83 (167)
.+ ...||+. |-..
T Consensus 92 ~~~~~~~~cr~~c~~~ 107 (802)
T 2xzl_A 92 SEAVVVLLCRIPCAQT 107 (802)
T ss_dssp ----CEEEETTTTTTC
T ss_pred CCceEEEEeCCcccch
Confidence 22 3577884 8543
No 40
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=36.00 E-value=12 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=22.7
Q ss_pred CccccccCCC-CeEEEecccccc-cchhhchh
Q 031017 2 KIQCDVCEKA-PATVICCADEAA-LCAKCDVE 31 (167)
Q Consensus 2 ~~~Cd~C~~~-~A~vyC~aD~A~-LC~~CD~~ 31 (167)
...|+.|.+. ...+.|..+..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4679999975 255889888766 99999644
No 41
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.97 E-value=21 Score=24.71 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=29.7
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCccccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~ 62 (167)
..|.+|+.... .+...+|..|++..|.. -+ ..||..++.....|..|..
T Consensus 17 ~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~-----Cl-~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDE-----DDKLLFCDGCDDNYHIF-----CL-LPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGG-----GGGCEECTTTCCEECSS-----SS-SSCCSSCCSSCCCCHHHHH
T ss_pred CCCccCCCcCC-----CCCEEEcCCCCchhccc-----cC-CCCcccCCCCCcCCccCcC
Confidence 35888886431 34567788999888853 11 2345555555555666644
No 42
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.36 E-value=22 Score=22.89 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=28.4
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccC
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (167)
..|.+|+.. ....+|..|+...|.. -+. .||..++.....|..|...
T Consensus 9 ~~C~vC~~~--------g~ll~CD~C~~~fH~~-----Cl~-ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG--------GELICCDGCPRAFHLA-----CLS-PPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC--------SSCEECSSCCCEECTT-----TSS-SCCSSCCSSCCCCHHHHHT
T ss_pred CCCccCCCC--------CCEEEcCCCChhhccc-----ccC-CCcCcCCCCCeECccccCc
Confidence 468888864 3556788899888853 111 2454455445556666544
No 43
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.30 E-value=22 Score=25.29 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=27.4
Q ss_pred cccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCccccc
Q 031017 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (167)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~ 62 (167)
.|.+|+... ..+...+|..||+..|.. -..-||..++.....|..|..
T Consensus 60 ~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~------Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSE-----NDDQLLFCDDCDRGYHMY------CLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCT-----TTTTEEECSSSCCEEETT------TSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccC-----CCCceEEcCCCCcccccc------ccCCCccCCCCCCeECccccc
Confidence 356666532 124566788999888853 122356555555555666643
No 44
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=32.55 E-value=15 Score=34.72 Aligned_cols=80 Identities=20% Similarity=0.439 Sum_probs=53.2
Q ss_pred CccccccCCC--CeEEEecccccccchhhchh--cccCcc-cccCceeceeccc---CCCCCCCcccccCceEEEe----
Q 031017 2 KIQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANK-LASKHQRLLLQCL---SNKLPPCDICQEKAAFIFC---- 69 (167)
Q Consensus 2 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~~--vH~aN~-la~rH~RvpL~~~---~~~~~~Cd~C~~~pA~v~C---- 69 (167)
...|.+|+-. ..++.|..+.-.||..=... -|--|- +.+||.-|-|.+- +-....|-.|+....++..
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 3579999985 58889999999999854422 233333 3458888888543 3346669999999766543
Q ss_pred cCC--cccccc-ccC
Q 031017 70 VED--RALFCK-DCD 81 (167)
Q Consensus 70 ~~d--~a~LC~-~CD 81 (167)
..+ ...||+ .|.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (800)
T 2wjy_A 86 KADSVVVLLCRQPCA 100 (800)
T ss_dssp ----CCEECCTTTTS
T ss_pred ccCceEEEEecCccc
Confidence 223 357888 474
No 45
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.54 E-value=7.8 Score=22.08 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=22.5
Q ss_pred ccccchhhchhcccCcccccCceeceecccCCCCCCCcccc
Q 031017 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (167)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~ 61 (167)
..+-|..|+...-.. ..+.+|+|+-..+. ...|++|+
T Consensus 11 k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDV-YHLNRHKLSHSGEK---PYSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSH-HHHHHHGGGSCSCC---CCCSCCCC
T ss_pred cCeeCCCCCcccCCH-HHHHHHHHhcCCCC---CccCCCCC
Confidence 346688888766543 34578888764332 23477765
No 46
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.33 E-value=45 Score=25.18 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=23.2
Q ss_pred CCCCcccccCceEEEecCCccccccccCC
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE 82 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~ 82 (167)
.-.|..|.+..-.+-|..+...||..|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHH
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcC
Confidence 34599999888777788888888888864
No 47
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.96 E-value=12 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=26.0
Q ss_pred CCccccccCCCCeEEEecccccccchhhchhc
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEV 32 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~v 32 (167)
|+..|..|+ +.-++|=.+-...+|..|...+
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCEE
Confidence 678899999 6888999999999999998544
No 48
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=29.79 E-value=18 Score=25.35 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=24.8
Q ss_pred CCccccccCCCCeEEEecccccccchhhchh
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (167)
|++.|..|+ +.-+||=.+-...+|..|...
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCCE
Confidence 677899998 578889889999999999743
No 49
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=29.49 E-value=74 Score=21.59 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=23.9
Q ss_pred CccccccCCCC---eEEEeccccc----ccchhhchhcc
Q 031017 2 KIQCDVCEKAP---ATVICCADEA----ALCAKCDVEVH 33 (167)
Q Consensus 2 ~~~Cd~C~~~~---A~vyC~aD~A----~LC~~CD~~vH 33 (167)
.+.||.|+..+ -.+.|..+.. -||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 46799999765 4578888765 59999976543
No 50
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=29.22 E-value=43 Score=21.93 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=10.2
Q ss_pred cccccchhhchhccc
Q 031017 20 DEAALCAKCDVEVHA 34 (167)
Q Consensus 20 D~A~LC~~CD~~vH~ 34 (167)
+...+|..|++..|.
T Consensus 31 ~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 31 DKQLMCDECDMAFHI 45 (70)
T ss_dssp GGEEECTTTCCEEEG
T ss_pred CCEEEcCCCCCceec
Confidence 345567788877775
No 51
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.86 E-value=35 Score=21.40 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=29.3
Q ss_pred CccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccC
Q 031017 2 KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (167)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (167)
...|.+|+.. +.-.+|..|++..|.. -+ ..||...+.....|..|...
T Consensus 5 ~~~C~vC~~~--------g~ll~Cd~C~~~fH~~-----Cl-~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS--------GQLLMCDTCSRVYHLD-----CL-DPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC--------SSCEECSSSSCEECGG-----GS-SSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC--------CcEEEcCCCCcCEECC-----cC-CCCcCCCCCCceEChhccCh
Confidence 3578999874 3566778898887852 11 12454455555667776543
No 52
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.77 E-value=36 Score=21.93 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=18.6
Q ss_pred CCCcccccCceEEEecCCcccccc
Q 031017 55 PPCDICQEKAAFIFCVEDRALFCK 78 (167)
Q Consensus 55 ~~Cd~C~~~pA~v~C~~d~a~LC~ 78 (167)
..|.+|+. ++.+.|..+.+.+|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 35999999 888888888877775
No 53
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.76 E-value=15 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.498 Sum_probs=25.1
Q ss_pred CCccccccCCCCeEEEecccccccchhhchhc
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEV 32 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~v 32 (167)
|+..|..|+ +.-++|=.+-...+|..|...+
T Consensus 14 m~VkCp~C~-~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCG-NEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEECSSSC-CEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccCcCCEE
Confidence 677899998 5778888888899999997443
No 54
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.45 E-value=43 Score=23.33 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=27.6
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccC
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (167)
..|.+|++.. .-.+|..|++..|.. -+ .-||.+.+.....|..|...
T Consensus 26 ~~C~vC~~~g--------~LL~CD~C~~~fH~~-----Cl-~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPG--------DLVMCNQCEFCFHLD-----CH-LPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSS--------CCEECTTSSCEECTT-----SS-STTCCCCCSSSCCCCSCCCC
T ss_pred CcCcCcCCCC--------CEEECCCCCCceecc-----cC-CCCCCCCcCCCcCCccccCC
Confidence 4688888643 456688899888853 11 12454455445556665543
No 55
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.68 E-value=15 Score=25.61 Aligned_cols=30 Identities=23% Similarity=0.680 Sum_probs=24.8
Q ss_pred CCccccccCCCCeEEEecccccccchhhchh
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (167)
|++.|..|+ +.-+||=.+-...+|..|...
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCCE
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCCE
Confidence 677899998 578888888888999999743
No 56
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.44 E-value=49 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=8.9
Q ss_pred ccccchhhchhccc
Q 031017 21 EAALCAKCDVEVHA 34 (167)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (167)
.-.+|..|+...|.
T Consensus 40 ~ll~CD~C~~~yH~ 53 (77)
T 2e6s_A 40 MQLLCDECNVAYHI 53 (77)
T ss_dssp TEEECSSSCCEEET
T ss_pred CEEEcCCCCccccc
Confidence 45557777776664
No 57
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.27 E-value=43 Score=25.97 Aligned_cols=70 Identities=16% Similarity=0.315 Sum_probs=39.5
Q ss_pred CccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCceeceecccCCCCCCCcccccCceEEEec--CCcccccc
Q 031017 2 KIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (167)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~pA~v~C~--~d~a~LC~ 78 (167)
...|-.|++. .+++-..- ...||..|-...+..... ..+-+ .-..|..|.+....+.|. .+...||.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~--------~DeDG-~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQ--------YDDDG-YQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTC--------BCTTS-SBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccc--------cCCCC-CcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 3456666653 22222222 455666665555443211 01111 133499999988777788 68889999
Q ss_pred ccC
Q 031017 79 DCD 81 (167)
Q Consensus 79 ~CD 81 (167)
.|-
T Consensus 106 ~CI 108 (159)
T 3a1b_A 106 ECV 108 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 58
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.22 E-value=18 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.607 Sum_probs=23.8
Q ss_pred CCccccccCCCCeEEEecccccccchhhchh
Q 031017 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (167)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (167)
|+..|..|+ +.-+||=.+-...+|..|...
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCCE
Confidence 567788888 577888888888888888743
No 59
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.67 E-value=52 Score=25.40 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=30.8
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecccCCCCCCCcccccCc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~p 64 (167)
..|.+|+.. +.-.+|..|++..|.. .| +-+|...+.....|..|...+
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----Cl-~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLD-----CH-LPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCST-----TS-TTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC--------CceeECCCCCchhccc-----cC-CCCcccCCCCCCCCcCccCCC
Confidence 468888854 3466788999888852 11 124555555566688887664
No 60
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.52 E-value=55 Score=23.05 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=20.0
Q ss_pred ccccchhhchhcccCcccccCceeceecccCCCCCCCcccc
Q 031017 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (167)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~ 61 (167)
...+|..||+..|..= .+-||.+.+.....|..|.
T Consensus 76 ~ll~Cd~C~~~yH~~C------l~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMEC------CDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CCEECTTTCCEECGGG------CSSCCSSCCSSCCCCTTTS
T ss_pred ceEEcCCCCCeeeccc------CCCCCCCCCCCCeECCCCC
Confidence 4567888888888521 1124555554455566554
No 61
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=24.99 E-value=25 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.810 Sum_probs=20.2
Q ss_pred ccccccCCCCeEEEecccccccchhhchhccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (167)
..|+.|++ .+| .+..|..|...+|.
T Consensus 15 t~C~~C~~---~l~----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 15 AFCDICQK---FLL----NGFRCQTCGYKFHE 39 (52)
T ss_dssp EECTTSSS---EEC----SEEECTTTTCCBCS
T ss_pred cCCCCccc---ccc----cCCEeCCCCCeECh
Confidence 46899986 344 78899999999996
No 62
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=24.69 E-value=23 Score=23.22 Aligned_cols=30 Identities=30% Similarity=0.741 Sum_probs=25.1
Q ss_pred cccccCC---CCeEEEecccccccch-hhchhccc
Q 031017 4 QCDVCEK---APATVICCADEAALCA-KCDVEVHA 34 (167)
Q Consensus 4 ~Cd~C~~---~~A~vyC~aD~A~LC~-~CD~~vH~ 34 (167)
+|.+|.. .++...|..+.+..|. .|-+ .|.
T Consensus 13 ~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~Hk 46 (59)
T 1x4s_A 13 PCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-THG 46 (59)
T ss_dssp EECSSCTTCCEEECEECTTTCCEESSHHHHH-HHC
T ss_pred cCcCCCCCcCCCccccCcCCCCCccChHHHH-HHh
Confidence 7999985 6899999999999998 8864 553
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=24.50 E-value=38 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.2
Q ss_pred ccccchhhchhccc
Q 031017 21 EAALCAKCDVEVHA 34 (167)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (167)
...+|..|++..|.
T Consensus 68 ~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 68 KMLVCDTCDKGYHT 81 (111)
T ss_dssp TEEECSSSCCEEEG
T ss_pred CeeECCCCCcHHhH
Confidence 35668888887775
No 64
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=23.10 E-value=13 Score=23.80 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCchhhhcccccccc-----CCcceeEe
Q 031017 143 SPWAVDDFLQFSDFE-----SSGKVIKI 165 (167)
Q Consensus 143 ~~~~~~~~~~~~~~~-----~~~~~~~~ 165 (167)
+-|.+-+=|.||||| ..|.+||+
T Consensus 23 q~~e~h~glslsdfev~ygn~~~eiikl 50 (56)
T 2le2_A 23 QYYEYHKGLSLSDFEVLYGNTADEIIKL 50 (56)
T ss_dssp EEEEEEEEECHHHHHHHHHHSCSCEEEE
T ss_pred eeeeeecCcccccEEEEeCCChhHeeEE
Confidence 347888889999998 56777775
No 65
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=26 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=16.9
Q ss_pred ccccchhhchhcccCcccccCceecee
Q 031017 21 EAALCAKCDVEVHAANKLASKHQRLLL 47 (167)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (167)
..+-|..|+...-... .+.+|+|+-.
T Consensus 11 ~~~~C~~C~k~f~~~~-~L~~H~~~H~ 36 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRV-HLTQHQRVHT 36 (46)
T ss_dssp CSEECTTTCCEESSSH-HHHTTGGGGS
T ss_pred CCeECCCCCcccCCHH-HHHHHHHHcC
Confidence 4466888887665533 4578887654
No 66
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.54 E-value=22 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.657 Sum_probs=12.8
Q ss_pred CCCCcccccCceEEEecCCccccccccC
Q 031017 54 LPPCDICQEKAAFIFCVEDRALFCKDCD 81 (167)
Q Consensus 54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD 81 (167)
..+|-+|+..+..- .|++|..|-
T Consensus 57 ~~rCIiCg~~~g~~-----dAYYC~eC~ 79 (109)
T 2k0a_A 57 AKNCIICNLNVGVN-----DAFYCWECC 79 (109)
T ss_dssp TSBCTTTSSSBCCE-----ECEECHHHH
T ss_pred CCceEEcCCCCCcc-----cceehHhhh
Confidence 45566666443321 467777664
No 67
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.06 E-value=10 Score=21.05 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=21.8
Q ss_pred ccccchhhchhcccCcccccCceeceecccCCCCCCCcccc
Q 031017 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (167)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~ 61 (167)
..+-|..|+...-... .+.+|+|+-..+. ...|+.|+
T Consensus 9 k~~~C~~C~k~f~~~~-~l~~H~~~H~~~~---~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKD-RMSYHVRSHDGSV---GKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHH-HHHHHHHHHSCCC---CCCCCCCC
T ss_pred CCCcCCCCCcccCCHH-HHHHHHHHccCCC---CCCCcCCC
Confidence 4566888887765433 4578887754322 23366653
No 68
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.50 E-value=64 Score=22.72 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=21.0
Q ss_pred ccccccCCCC---eEEEecccc-cccchhhch
Q 031017 3 IQCDVCEKAP---ATVICCADE-AALCAKCDV 30 (167)
Q Consensus 3 ~~Cd~C~~~~---A~vyC~aD~-A~LC~~CD~ 30 (167)
..||.|+..+ -.+.|..+. --||..|-.
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~ 63 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 63 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHc
Confidence 6799999754 557888774 559999953
No 69
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.38 E-value=38 Score=21.40 Aligned_cols=29 Identities=24% Similarity=0.668 Sum_probs=18.9
Q ss_pred ccccccCCCCeEEEecccccccchhhchhccc
Q 031017 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (167)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (167)
..|.+|+..... ..+...+|..|+...|.
T Consensus 7 ~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~ 35 (66)
T 2yt5_A 7 GVCTICQEEYSE---APNEMVICDKCGQGYHQ 35 (66)
T ss_dssp CCBSSSCCCCCB---TTBCEEECSSSCCEEET
T ss_pred CCCCCCCCCCCC---CCCCEEECCCCChHHHh
Confidence 568888864211 12345668899988885
No 70
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=1e+02 Score=19.81 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=22.5
Q ss_pred ccccccCCCC---eEEEecccc-cccchhhchhc
Q 031017 3 IQCDVCEKAP---ATVICCADE-AALCAKCDVEV 32 (167)
Q Consensus 3 ~~Cd~C~~~~---A~vyC~aD~-A~LC~~CD~~v 32 (167)
+.||.|+..+ -.+.|..+. --||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999764 557888775 45999997553
Done!