Query         031019
Match_columns 167
No_of_seqs    126 out of 211
Neff          4.2 
Searched_HMMs 46136
Date          Fri Mar 29 08:01:57 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031019hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF03763 Remorin_C:  Remorin, C 100.0 4.3E-38 9.2E-43  240.0  15.3  108   55-162     2-109 (111)
  2 PF03763 Remorin_C:  Remorin, C  96.9   0.032 6.9E-07   42.8  11.6   81   54-134    23-103 (111)
  3 PF03766 Remorin_N:  Remorin, N  94.5   0.013 2.8E-07   40.7   0.5   19   35-53     39-57  (57)
  4 PRK09174 F0F1 ATP synthase sub  75.1      45 0.00099   27.8  10.0   64   74-138    83-146 (204)
  5 PRK14162 heat shock protein Gr  66.6      60  0.0013   27.2   8.9   85   19-120    10-94  (194)
  6 cd03404 Band_7_HflK Band_7_Hfl  58.7      81  0.0017   26.3   8.4   50  106-155   192-241 (266)
  7 TIGR01933 hflK HflK protein. H  57.7 1.1E+02  0.0024   25.4   9.4   49  106-154   165-213 (261)
  8 KOG4661 Hsp27-ERE-TATA-binding  50.2 1.4E+02   0.003   30.1   9.4   72   63-134   619-703 (940)
  9 PF10376 Mei5:  Double-strand r  39.0 2.1E+02  0.0045   24.5   7.9   58   81-139   130-187 (221)
 10 COG5269 ZUO1 Ribosome-associat  38.9 3.1E+02  0.0068   25.2  11.5   60   72-131   233-292 (379)
 11 KOG3654 Uncharacterized CH dom  37.5   1E+02  0.0022   30.4   6.3   43   87-140   397-441 (708)
 12 PRK13455 F0F1 ATP synthase sub  34.8 2.4E+02  0.0051   22.6  10.0   58   73-131    56-113 (184)
 13 PRK14475 F0F1 ATP synthase sub  34.0 2.4E+02  0.0051   22.3  10.0   26  117-142   104-129 (167)
 14 PF11559 ADIP:  Afadin- and alp  31.1 1.7E+02  0.0037   22.5   5.8   10   80-89     85-94  (151)
 15 PRK14474 F0F1 ATP synthase sub  30.5 3.4E+02  0.0075   23.1   9.8   15   61-75     41-55  (250)
 16 PF07352 Phage_Mu_Gam:  Bacteri  29.7   2E+02  0.0044   22.4   6.0   39   67-105    16-54  (149)
 17 PRK13665 hypothetical protein;  29.4 1.4E+02  0.0029   27.2   5.4   25   90-114   234-258 (316)
 18 PRK10930 FtsH protease regulat  29.4 3.4E+02  0.0074   25.3   8.3   55  100-154   255-309 (419)
 19 PF12127 YdfA_immunity:  SigmaW  29.0 1.3E+02  0.0029   27.3   5.3   25   90-114   229-253 (316)
 20 PF11875 DUF3395:  Domain of un  25.6 3.2E+02  0.0069   21.7   6.5   37  106-142    11-47  (151)
 21 PF12856 Apc9:  Anaphase-promot  25.4      54  0.0012   25.0   2.0   19   57-75     44-62  (100)
 22 KOG4326 Mitochondrial F1F0-ATP  25.3 2.8E+02  0.0061   20.5   5.7   26   74-99     31-56  (81)
 23 PRK14475 F0F1 ATP synthase sub  24.6 3.5E+02  0.0077   21.3   9.8   38   95-132    60-97  (167)
 24 PRK06569 F0F1 ATP synthase sub  24.4 3.9E+02  0.0084   21.7  10.2   45   94-138    59-103 (155)
 25 PRK14471 F0F1 ATP synthase sub  24.4 3.4E+02  0.0075   21.1   9.8   10   63-72     46-55  (164)
 26 smart00187 INB Integrin beta s  23.4      42 0.00091   31.5   1.2   30   14-43    174-203 (423)
 27 KOG0577 Serine/threonine prote  22.8   8E+02   0.017   25.3   9.8   80   63-142   816-899 (948)
 28 PRK09173 F0F1 ATP synthase sub  22.7 3.7E+02   0.008   20.8   9.7   19  124-142   103-121 (159)
 29 PRK13428 F0F1 ATP synthase sub  22.7 6.2E+02   0.013   23.5   9.8   75   84-158    26-103 (445)
 30 PRK11029 FtsH protease regulat  21.7 3.8E+02  0.0081   24.1   6.9   18  122-139   262-279 (334)
 31 KOG1103 Predicted coiled-coil   20.5 7.5E+02   0.016   23.6  10.4   47   85-131   155-211 (561)

No 1  
>PF03763 Remorin_C:  Remorin, C-terminal region ;  InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00  E-value=4.3e-38  Score=239.96  Aligned_cols=108  Identities=56%  Similarity=0.790  Sum_probs=105.7

Q ss_pred             HHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031019           55 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAM  134 (167)
Q Consensus        55 ~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~  134 (167)
                      .+.+++++++||++|++|+++||++++++|++|||+|+++|+++|+++|++||++|+.++|+|+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHHHHHhhcCCCCCC
Q 031019          135 VEARRGEDVLKAEEIAAKYRATGTTPKK  162 (167)
Q Consensus       135 aeakr~ee~~K~~ekA~kiR~TGk~P~s  162 (167)
                      ++++++++++++.++|++||+||++|++
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~  109 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSK  109 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999999976


No 2  
>PF03763 Remorin_C:  Remorin, C-terminal region ;  InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.88  E-value=0.032  Score=42.84  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=63.5

Q ss_pred             HHHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           54 EKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRA  133 (167)
Q Consensus        54 ~~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA  133 (167)
                      ..++.++.|.+||..+++|+....++.|.++.-=-..---+....|..+..+.|.+|+.+..+-.+.+..+..+|.-.|+
T Consensus        23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~  102 (111)
T PF03763_consen   23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA  102 (111)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence            34567899999999999999999999998764322222224445566678899999999999999999999999988875


Q ss_pred             h
Q 031019          134 M  134 (167)
Q Consensus       134 ~  134 (167)
                      .
T Consensus       103 t  103 (111)
T PF03763_consen  103 T  103 (111)
T ss_pred             C
Confidence            3


No 3  
>PF03766 Remorin_N:  Remorin, N-terminal region ;  InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=94.48  E-value=0.013  Score=40.71  Aligned_cols=19  Identities=58%  Similarity=0.672  Sum_probs=16.2

Q ss_pred             hcccCCCCCchhhHHHHHH
Q 031019           35 SGEKKISGSHDRDVALAEV   53 (167)
Q Consensus        35 ~~~~~~~gs~~rd~~l~~v   53 (167)
                      +.+|+++||+|||+.|++|
T Consensus        39 a~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen   39 AEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             cccccCCCcchhhhhhhcC
Confidence            4567899999999999875


No 4  
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=75.09  E-value=45  Score=27.78  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=34.6

Q ss_pred             HHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 031019           74 ENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEAR  138 (167)
Q Consensus        74 ~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeak  138 (167)
                      ..|.++-...|..=++ .+..|+..+...|.+|..-|.++.+-+.+-...++..+++.+..+++.
T Consensus        83 e~R~~~I~~~L~~Ae~-~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~e  146 (204)
T PRK09174         83 ETRRDRIAQDLDQAAR-LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEAS  146 (204)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333 234555566666666666666666666655555555555555444444


No 5  
>PRK14162 heat shock protein GrpE; Provisional
Probab=66.61  E-value=60  Score=27.23  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             eeccCCCCCchhhhhhhcccCCCCCchhhHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHH
Q 031019           19 HILPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAK   98 (167)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~gs~~rd~~l~~v~~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~   98 (167)
                      .-||-.+|.|.|-++-+.+-|......-+.-+..+..     .+.. -+.+...+..+|.|..+.   +||.+       
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-----~l~~-l~~e~~elkd~~lR~~AE---feN~r-------   73 (194)
T PRK14162         10 KDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEK-----EIAD-LKAKNKDLEDKYLRSQAE---IQNMQ-------   73 (194)
T ss_pred             cccchhhcccccccccccccccccccccchhHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHH---HHHHH-------
Confidence            4589999999999988776664433322222222211     1111 123334456677666555   45555       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 031019           99 LKKIEEQLERKKAEYAEKMKNK  120 (167)
Q Consensus        99 mrK~E~KLEkkRA~a~EKm~NK  120 (167)
                       ++.+.+.+..+-.+.+++...
T Consensus        74 -kR~~kE~e~~~~~a~~~~~~~   94 (194)
T PRK14162         74 -NRYAKERAQLIKYESQSLAKD   94 (194)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Confidence             455556666666666655544


No 6  
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains.  Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex.  HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins.  HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=58.71  E-value=81  Score=26.26  Aligned_cols=50  Identities=24%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhHHHHHHHHHHHhh
Q 031019          106 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRA  155 (167)
Q Consensus       106 LEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~K~~ekA~kiR~  155 (167)
                      .++.++++...-...++.|+..|+..+..+++.+.....+++-.|..|+.
T Consensus       192 ~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~  241 (266)
T cd03404         192 RERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFES  241 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34555555333344667888888889999999999998888877777664


No 7  
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=57.70  E-value=1.1e+02  Score=25.42  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhHHHHHHHHHHHh
Q 031019          106 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYR  154 (167)
Q Consensus       106 LEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~K~~ekA~kiR  154 (167)
                      .++.++++...-...+..|...|+..+..|++.+..+..+++-.|..++
T Consensus       165 ~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~  213 (261)
T TIGR01933       165 EERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFT  213 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3555555554444555666666666666666666666666655555543


No 8  
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.24  E-value=1.4e+02  Score=30.09  Aligned_cols=72  Identities=24%  Similarity=0.375  Sum_probs=44.9

Q ss_pred             HhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           63 KAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEE-------------QLERKKAEYAEKMKNKVALVHKEAE  129 (167)
Q Consensus        63 ~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~-------------KLEkkRA~a~EKm~NKiA~a~kkAE  129 (167)
                      ..-+-.+...+..+-.+++-.-.+||...+...++++-++|-             .||++|.+.++.-...-.+||+.-+
T Consensus       619 r~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihreRe  698 (940)
T KOG4661|consen  619 RRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHRERE  698 (940)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence            344445777788888888888899999988887777766652             2334444444444444455554444


Q ss_pred             HHHHh
Q 031019          130 EKRAM  134 (167)
Q Consensus       130 ekRA~  134 (167)
                      +-|-+
T Consensus       699 elRrq  703 (940)
T KOG4661|consen  699 ELRRQ  703 (940)
T ss_pred             HHhhc
Confidence            44433


No 9  
>PF10376 Mei5:  Double-strand recombination repair protein  ;  InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=39.02  E-value=2.1e+02  Score=24.47  Aligned_cols=58  Identities=21%  Similarity=0.187  Sum_probs=46.7

Q ss_pred             HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 031019           81 LSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARR  139 (167)
Q Consensus        81 eakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr  139 (167)
                      +-.++.|+. .+++.+.+++..+..|.+....-+.+++|.+..++..-.+||...+..-
T Consensus       130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l  187 (221)
T PF10376_consen  130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEAL  187 (221)
T ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            445677766 6678888888899999998888889999999999988888887765543


No 10 
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=38.87  E-value=3.1e+02  Score=25.17  Aligned_cols=60  Identities=23%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             HHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           72 KAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEK  131 (167)
Q Consensus        72 K~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEek  131 (167)
                      |...--.+++.+|..||-+--+.+++.....-..-++-|++..-.-.--++.+.++|.|-
T Consensus       233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~  292 (379)
T COG5269         233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEV  292 (379)
T ss_pred             hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHH
Confidence            444455677889999998877766555443322223455555444444455555555443


No 11 
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=37.45  E-value=1e+02  Score=30.35  Aligned_cols=43  Identities=33%  Similarity=0.464  Sum_probs=24.5

Q ss_pred             HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 031019           87 WENSKKASLEAKLKK--IEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG  140 (167)
Q Consensus        87 WEn~qKAKAEA~mrK--~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~  140 (167)
                      .|..|+-.-|++.||  +|.+.|.+|.+           +.++|||-|+-.|..++
T Consensus       397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~a  441 (708)
T KOG3654|consen  397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEVA  441 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhhh
Confidence            345555555555554  45666666654           45666666666655443


No 12 
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.77  E-value=2.4e+02  Score=22.56  Aligned_cols=58  Identities=10%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             HHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           73 AENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEK  131 (167)
Q Consensus        73 ~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEek  131 (167)
                      +.+|-++-...|..=|. .+..|+..+...+.+|+.-|.++.+-+.+-...++...++.
T Consensus        56 L~~R~~~I~~~l~~Ae~-~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~  113 (184)
T PRK13455         56 LDKRAEGIRSELEEARA-LREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQA  113 (184)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444443322 22344444444445555555444444444333333333333


No 13 
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.99  E-value=2.4e+02  Score=22.31  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhchh
Q 031019          117 MKNKVALVHKEAEEKRAMVEARRGED  142 (167)
Q Consensus       117 m~NKiA~a~kkAEekRA~aeakr~ee  142 (167)
                      ....+..+....+..|..+...-..+
T Consensus       104 a~~~~~~A~~~I~~e~~~a~~el~~e  129 (167)
T PRK14475        104 IKRRAEMAERKIAQAEAQAAADVKAA  129 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344433333343333333333


No 14 
>PF11559 ADIP:  Afadin- and alpha -actinin-Binding;  InterPro: IPR021622  This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. 
Probab=31.14  E-value=1.7e+02  Score=22.50  Aligned_cols=10  Identities=20%  Similarity=0.039  Sum_probs=3.8

Q ss_pred             hHHhHHHHHH
Q 031019           80 KLSAVAAWEN   89 (167)
Q Consensus        80 eeakI~aWEn   89 (167)
                      .+..+..+++
T Consensus        85 ~ere~~~~~~   94 (151)
T PF11559_consen   85 LERELASAEE   94 (151)
T ss_pred             HHHHHHHHHH
Confidence            3333333333


No 15 
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.52  E-value=3.4e+02  Score=23.14  Aligned_cols=15  Identities=20%  Similarity=0.658  Sum_probs=7.9

Q ss_pred             hHHhHHHHHHhHHHH
Q 031019           61 FIKAWEESEKTKAEN   75 (167)
Q Consensus        61 ~a~AWEeaEkaK~~~   75 (167)
                      .....++++..+...
T Consensus        41 I~~~l~~Ae~~~~eA   55 (250)
T PRK14474         41 IANRWQDAEQRQQEA   55 (250)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            335566666554443


No 16 
>PF07352 Phage_Mu_Gam:  Bacteriophage Mu Gam like protein;  InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.75  E-value=2e+02  Score=22.38  Aligned_cols=39  Identities=18%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             HHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHH
Q 031019           67 ESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQ  105 (167)
Q Consensus        67 eaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~K  105 (167)
                      ..+.+.+.+.++.+-+.|..|-..+.+.....+.-++.-
T Consensus        16 ~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~   54 (149)
T PF07352_consen   16 QREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL   54 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777777777777777666666666655533


No 17 
>PRK13665 hypothetical protein; Provisional
Probab=29.43  E-value=1.4e+02  Score=27.18  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           90 SKKASLEAKLKKIEEQLERKKAEYA  114 (167)
Q Consensus        90 ~qKAKAEA~mrK~E~KLEkkRA~a~  114 (167)
                      +|-.+|||..+-.+.|.|..|+.+.
T Consensus       234 Lq~dQAEADk~iAqAkAEeRRAmAv  258 (316)
T PRK13665        234 LQTDQAEADKRIAQAKAEERRAMAV  258 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777766666666666554


No 18 
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=29.39  E-value=3.4e+02  Score=25.25  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhHHHHHHHHHHHh
Q 031019          100 KKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYR  154 (167)
Q Consensus       100 rK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~K~~ekA~kiR  154 (167)
                      ...+...++.+.++...-..-+..|+..|+...+.|++.+...+++++-.|+.|.
T Consensus       255 ~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~  309 (419)
T PRK10930        255 IAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFA  309 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3334445566666665556666788888888888888888888888877776543


No 19 
>PF12127 YdfA_immunity:  SigmaW regulon antibacterial;  InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known.  The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins. 
Probab=29.00  E-value=1.3e+02  Score=27.32  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=15.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           90 SKKASLEAKLKKIEEQLERKKAEYA  114 (167)
Q Consensus        90 ~qKAKAEA~mrK~E~KLEkkRA~a~  114 (167)
                      +|-.+|||.++-.+.|.|..|+-+.
T Consensus       229 Lq~dQAeADk~iAqAkAEeRRA~Av  253 (316)
T PF12127_consen  229 LQTDQAEADKRIAQAKAEERRAMAV  253 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677776666666666655443


No 20 
>PF11875 DUF3395:  Domain of unknown function (DUF3395);  InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length. 
Probab=25.65  E-value=3.2e+02  Score=21.69  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchh
Q 031019          106 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGED  142 (167)
Q Consensus       106 LEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee  142 (167)
                      +++.|....+.+..+.+.+....+.|+..++.++..|
T Consensus        11 ~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E   47 (151)
T PF11875_consen   11 IEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKE   47 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444455555555554444


No 21 
>PF12856 Apc9:  Anaphase-promoting complex subunit 9;  InterPro: IPR024274  The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=25.37  E-value=54  Score=25.00  Aligned_cols=19  Identities=47%  Similarity=0.496  Sum_probs=15.2

Q ss_pred             HHHHhHHhHHHHHHhHHHH
Q 031019           57 KRESFIKAWEESEKTKAEN   75 (167)
Q Consensus        57 k~~s~a~AWEeaEkaK~~~   75 (167)
                      -++|+|.+|+.+|++-.+-
T Consensus        44 l~eSkI~~~l~sEra~h~l   62 (100)
T PF12856_consen   44 LRESKIKAWLSSERAAHCL   62 (100)
T ss_pred             HHHHHHHHHHHHHHHhcce
Confidence            5799999999999865443


No 22 
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=25.30  E-value=2.8e+02  Score=20.45  Aligned_cols=26  Identities=12%  Similarity=0.097  Sum_probs=20.4

Q ss_pred             HHHHHHhHHhHHHHHHhHHHHHHHHH
Q 031019           74 ENKAQKKLSAVAAWENSKKASLEAKL   99 (167)
Q Consensus        74 ~~R~~reeakI~aWEn~qKAKAEA~m   99 (167)
                      .++......+|..|+.++|+.+.|+.
T Consensus        31 ~~~l~~~~e~~Rei~a~eKav~da~~   56 (81)
T KOG4326|consen   31 LRQLREYHEDIREIDAHEKAVADAEE   56 (81)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence            34556668899999999999888754


No 23 
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.57  E-value=3.5e+02  Score=21.30  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           95 LEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKR  132 (167)
Q Consensus        95 AEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekR  132 (167)
                      |+..+...+.+|..-|.++.+-+.+-...+....++.+
T Consensus        60 Ae~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~   97 (167)
T PRK14475         60 AQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAK   97 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444554444444444444444443333333


No 24 
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.45  E-value=3.9e+02  Score=21.73  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 031019           94 SLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEAR  138 (167)
Q Consensus        94 KAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeak  138 (167)
                      .|+......|..|..-|.++.+--......+...|+..|+.+++.
T Consensus        59 eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~  103 (155)
T PRK06569         59 EVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD  103 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433333444444444444444443


No 25 
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.36  E-value=3.4e+02  Score=21.10  Aligned_cols=10  Identities=20%  Similarity=0.398  Sum_probs=4.6

Q ss_pred             HhHHHHHHhH
Q 031019           63 KAWEESEKTK   72 (167)
Q Consensus        63 ~AWEeaEkaK   72 (167)
                      ...++++..+
T Consensus        46 ~~l~~A~~~~   55 (164)
T PRK14471         46 NALASAEEAR   55 (164)
T ss_pred             HHHHHHHHHH
Confidence            4455554433


No 26 
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular  matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=23.41  E-value=42  Score=31.53  Aligned_cols=30  Identities=17%  Similarity=0.361  Sum_probs=23.6

Q ss_pred             ceeeeeeccCCCCCchhhhhhhcccCCCCC
Q 031019           14 RFMYFHILPLTETPDSAKKKISGEKKISGS   43 (167)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs   43 (167)
                      -|-|.|+||||...+.-...+...+-+|+-
T Consensus       174 ~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~  203 (423)
T smart00187      174 PYGFKHVLSLTDDTDEFNEEVKKQRISGNL  203 (423)
T ss_pred             CcceeeeccCCCCHHHHHHHHhhceeecCC
Confidence            578999999999988888887766655543


No 27 
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.81  E-value=8e+02  Score=25.31  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=58.3

Q ss_pred             HhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 031019           63 KAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE----RKKAEYAEKMKNKVALVHKEAEEKRAMVEAR  138 (167)
Q Consensus        63 ~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLE----kkRA~a~EKm~NKiA~a~kkAEekRA~aeak  138 (167)
                      +.|.++|---.....+.+..-+.+.++.-|+.++.+..+.-.+||    -.|+-..+||-.+++.++.---+.--+...+
T Consensus       816 de~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~er  895 (948)
T KOG0577|consen  816 DEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLER  895 (948)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhh
Confidence            778889988899999999999999999999998887666554554    4677888888888877764433332344444


Q ss_pred             hchh
Q 031019          139 RGED  142 (167)
Q Consensus       139 r~ee  142 (167)
                      +..+
T Consensus       896 ~~~e  899 (948)
T KOG0577|consen  896 HARE  899 (948)
T ss_pred             hHHH
Confidence            4333


No 28 
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.69  E-value=3.7e+02  Score=20.83  Aligned_cols=19  Identities=0%  Similarity=-0.069  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHhHHHHhchh
Q 031019          124 VHKEAEEKRAMVEARRGED  142 (167)
Q Consensus       124 a~kkAEekRA~aeakr~ee  142 (167)
                      ++...+..|..+...-..+
T Consensus       103 a~~~I~~ek~~a~~el~~~  121 (159)
T PRK09173        103 AEQKIAQAETDAINAVRSS  121 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4433333343333333333


No 29 
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.69  E-value=6.2e+02  Score=23.46  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhHHHHHHHHHHHhhcCC
Q 031019           84 VAAWENSKKASLEAKLKKIE---EQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGT  158 (167)
Q Consensus        84 I~aWEn~qKAKAEA~mrK~E---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~K~~ekA~kiR~TGk  158 (167)
                      |...=+..+.+....|...|   .+++..++.|.+.+.+--..++.+-++.+..++..+.+....+.+.++.+...++
T Consensus        26 i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~  103 (445)
T PRK13428         26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGA  103 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


No 30 
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=21.73  E-value=3.8e+02  Score=24.12  Aligned_cols=18  Identities=17%  Similarity=0.115  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHhHHHHh
Q 031019          122 ALVHKEAEEKRAMVEARR  139 (167)
Q Consensus       122 A~a~kkAEekRA~aeakr  139 (167)
                      +.+.+.|...|+..++.+
T Consensus       262 AeA~~~a~i~~aegeA~a  279 (334)
T PRK11029        262 AEAERQGRIMRGEGDAEA  279 (334)
T ss_pred             HHHHHHHHHHHhhhHHHH
Confidence            333344444444444433


No 31 
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=20.54  E-value=7.5e+02  Score=23.61  Aligned_cols=47  Identities=32%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 031019           85 AAWENSKKASLEAKLKKIEEQLERKKAEY----------AEKMKNKVALVHKEAEEK  131 (167)
Q Consensus        85 ~aWEn~qKAKAEA~mrK~E~KLEkkRA~a----------~EKm~NKiA~a~kkAEek  131 (167)
                      ..+|-.++-|+|-+-+|+|+.||..|.+-          -.++.||.+....+|++-
T Consensus       155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei  211 (561)
T KOG1103|consen  155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI  211 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            46888999999999999999998766532          135668888888888765


Done!