Query 031019
Match_columns 167
No_of_seqs 126 out of 211
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 35.5 2.2E+02 0.0075 24.7 11.3 48 114-161 539-586 (597)
2 3ljm_A Coil Ser L9C; de novo d 31.5 59 0.002 19.0 3.4 22 86-107 2-25 (31)
3 3mq9_A Bone marrow stromal ant 22.7 3.5E+02 0.012 22.8 15.0 96 42-139 367-470 (471)
4 2eqb_B RAB guanine nucleotide 21.0 2.4E+02 0.0083 20.4 11.3 38 88-125 38-75 (97)
5 2e7s_A RAB guanine nucleotide 19.7 2.2E+02 0.0074 21.8 5.6 39 87-125 57-95 (135)
6 2iue_A Pactolus I-domain; memb 19.7 53 0.0018 26.5 2.2 37 16-52 52-88 (212)
7 3pzp_A DNA polymerase kappa; D 17.0 3.2E+02 0.011 24.4 6.9 69 39-110 15-86 (517)
8 3na7_A HP0958; flagellar bioge 16.8 4E+02 0.014 21.2 13.2 12 156-167 191-205 (256)
9 3prh_A Tryptophanyl-tRNA synth 15.8 4.7E+02 0.016 22.7 7.5 69 20-102 237-314 (388)
10 1e0n_A Hypothetical protein; Y 15.1 69 0.0024 17.7 1.3 13 8-20 5-17 (27)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.47 E-value=2.2e+02 Score=24.68 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhchhHHHHHHHHHHHhhcCCCCC
Q 031019 114 AEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPK 161 (167)
Q Consensus 114 ~EKm~NKiA~a~kkAEekRA~aeakr~ee~~K~~ekA~kiR~TGk~P~ 161 (167)
.+.+.+++..+.+.-++++.....-+.+-.....+.-.....+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456777777777777766666555544444555555566655554
No 2
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=31.53 E-value=59 Score=18.95 Aligned_cols=22 Identities=50% Similarity=0.863 Sum_probs=12.3
Q ss_pred HHHHhHH--HHHHHHHHHHHHHHH
Q 031019 86 AWENSKK--ASLEAKLKKIEEQLE 107 (167)
Q Consensus 86 aWEn~qK--AKAEA~mrK~E~KLE 107 (167)
.||.+.| |..|.+++-+|.+||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666554 344556666665555
No 3
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.67 E-value=3.5e+02 Score=22.85 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCchhhHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 031019 42 GSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEA-----KLKKIEEQLERKKAEYAEK 116 (167)
Q Consensus 42 gs~~rd~~l~~v~~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA-----~mrK~E~KLEkkRA~a~EK 116 (167)
|..+.+..|..+..+-....-..+.+.|......=.++.....+. |...+.+.| -.--+..-||++.+....+
T Consensus 367 G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T 3mq9_A 367 GRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQK--GFQDVEAQAATANHTVMALMASLDAEKAQGQKK 444 (471)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhh--hHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 445556666665444433333334443333333333333322221 222222222 2223446677777765444
Q ss_pred H---HHHHHHHHHHHHHHHHhHHHHh
Q 031019 117 M---KNKVALVHKEAEEKRAMVEARR 139 (167)
Q Consensus 117 m---~NKiA~a~kkAEekRA~aeakr 139 (167)
+ -++|.....+-++.+|.++.+|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 3777777777777777776654
No 4
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.02 E-value=2.4e+02 Score=20.39 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=33.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019 88 ENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVH 125 (167)
Q Consensus 88 En~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~ 125 (167)
|..++..||....+++.+||-.=+.+.+.-.+=++.++
T Consensus 38 E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 38 ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999998887777764
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=19.75 E-value=2.2e+02 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019 87 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVH 125 (167)
Q Consensus 87 WEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~ 125 (167)
=|..++..||....+++.+||--=+...+.-.+=++.++
T Consensus 57 eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar 95 (135)
T 2e7s_A 57 KENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADAR 95 (135)
T ss_dssp HTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999998877777664
No 6
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=19.69 E-value=53 Score=26.45 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=28.3
Q ss_pred eeeeeccCCCCCchhhhhhhcccCCCCCchhhHHHHH
Q 031019 16 MYFHILPLTETPDSAKKKISGEKKISGSHDRDVALAE 52 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~rd~~l~~ 52 (167)
-|+|.||||..++.....+.....+||.-..+..+.-
T Consensus 52 ~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~PE~g~da 88 (212)
T 2iue_A 52 TFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDA 88 (212)
T ss_dssp CEEEEEEEESCHHHHHHHHHTCCCCCCSSSSBCHHHH
T ss_pred cceecCCcCCCHHHHHHHHhhccccCCCCCCchHHHH
Confidence 3799999999999999999887777765444444433
No 7
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=17.01 E-value=3.2e+02 Score=24.38 Aligned_cols=69 Identities=7% Similarity=0.124 Sum_probs=30.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhHHhHHHHHH---hHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 031019 39 KISGSHDRDVALAEVEKEKRESFIKAWEESEK---TKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKK 110 (167)
Q Consensus 39 ~~~gs~~rd~~l~~v~~ek~~s~a~AWEeaEk---aK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkR 110 (167)
+-=.++|.+.+-.-+.....- +.+-+.|. ..++.|.+++..+...-...+..+++.++.++..+||.-|
T Consensus 15 ag~~~~d~~~i~~ii~~~s~g---s~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r 86 (517)
T 3pzp_A 15 AGMEGLDKEKINKIIMEATKG---SRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSR 86 (517)
T ss_dssp CSCCSCCHHHHHHHHHHTTTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcc
Confidence 333466666555544332222 22333222 2233333333333333344444555555555555555544
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=16.82 E-value=4e+02 Score=21.16 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=6.7
Q ss_pred cCCCCCC---CCCCC
Q 031019 156 TGTTPKK---LLGCF 167 (167)
Q Consensus 156 TGk~P~s---~~gCF 167 (167)
+|-+|-. ..|||
T Consensus 191 ~avv~v~~~~C~GC~ 205 (256)
T 3na7_A 191 TSIVTIKKQACGGCF 205 (256)
T ss_dssp GSEEECBTTBCTTTC
T ss_pred ceEEEeeCCccCCCC
Confidence 4445522 45897
No 9
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=15.76 E-value=4.7e+02 Score=22.72 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred eccCCCCCchhhhhhhccc-CCCCCc--------hhhHHHHHHHHHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHh
Q 031019 20 ILPLTETPDSAKKKISGEK-KISGSH--------DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENS 90 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~gs~--------~rd~~l~~v~~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~ 90 (167)
.+.|+++|+..++||+.-. .+.+.+ +.+..+.- .......+...+...|. .. .|-..
T Consensus 237 ~I~L~D~p~~I~kKI~ka~TD~~~~~~~~~~~~p~v~~l~~i---------~~~~~~~~~eel~~~y~---g~--~~g~l 302 (388)
T 3prh_A 237 YITLLDEPKQLEKKIKSAVTDSEGIVKFDKENKPGVSNLLTI---------YSILGNTTIEELEAKYE---GK--GYGEF 302 (388)
T ss_dssp CCBTTCCHHHHHHHHHTCCCCSSCCCCCCTTTCHHHHHHHHH---------HHHHHTCCHHHHHHHTT---TC--CHHHH
T ss_pred eeecCCCHHHHHHHHhhccCCCCCcccCCCCCCCCcchHHHH---------HHhcCCCcHHHHHHHHc---CC--CHHHH
Confidence 4678999999999997643 222221 11222222 12233344555666665 12 78888
Q ss_pred HHHHHHHHHHHH
Q 031019 91 KKASLEAKLKKI 102 (167)
Q Consensus 91 qKAKAEA~mrK~ 102 (167)
|++-|++=...+
T Consensus 303 K~~lae~l~~~l 314 (388)
T 3prh_A 303 KGDLAEVVVNAL 314 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887644433
No 10
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=15.07 E-value=69 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=11.0
Q ss_pred eeccccceeeeee
Q 031019 8 FSHRSTRFMYFHI 20 (167)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (167)
|++.+.|++||+.
T Consensus 5 ~~~~~g~~YYyN~ 17 (27)
T 1e0n_A 5 IIHENGRPLYYNA 17 (27)
T ss_dssp EEESSSSEEEEET
T ss_pred EECCCCCeEEEEC
Confidence 6788899999985
Done!