Query 031019
Match_columns 167
No_of_seqs 126 out of 211
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 12:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tyeb2 c.62.1.1 (B:107-354) I 17.6 29 0.0021 25.8 2.2 33 14-46 81-113 (248)
2 d2d4ca1 a.238.1.1 (A:11-247) E 15.3 1.5E+02 0.011 20.3 5.6 48 73-120 151-198 (237)
3 d1dfup_ b.53.1.1 (P:) Ribosoma 11.7 17 0.0012 23.9 -0.8 17 149-165 16-32 (94)
4 d1oaoc_ e.26.1.3 (C:) Bifuncti 11.1 35 0.0026 30.5 1.0 8 160-167 591-598 (729)
5 d1r6ta2 c.26.1.1 (A:82-467) Tr 8.4 2.5E+02 0.018 22.0 5.4 23 20-42 277-299 (386)
6 d1p9sa_ b.47.1.4 (A:) Coronavi 6.8 1.1E+02 0.0077 24.5 2.2 23 3-25 146-168 (300)
7 d2duca1 b.47.1.4 (A:2-301) Cor 6.6 1.1E+02 0.0081 24.4 2.2 23 3-25 146-168 (300)
8 d1lvoa_ b.47.1.4 (A:) Coronavi 6.4 1.1E+02 0.0083 24.3 2.2 23 3-25 146-168 (299)
9 d3e2ba1 d.39.1.1 (A:3-89) Dyne 5.9 1.1E+02 0.0083 19.2 1.6 20 4-23 60-79 (87)
10 d2clyb1 f.53.1.1 (B:4-123) ATP 4.8 4E+02 0.029 17.7 4.1 15 96-110 105-119 (120)
No 1
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.62 E-value=29 Score=25.80 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=27.0
Q ss_pred ceeeeeeccCCCCCchhhhhhhcccCCCCCchh
Q 031019 14 RFMYFHILPLTETPDSAKKKISGEKKISGSHDR 46 (167)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~r 46 (167)
-|-|.|.+|||..++.....+.....+||.-..
T Consensus 81 ~f~~~~~~~~t~d~~~f~~~l~~~~~~GggD~p 113 (248)
T d1tyeb2 81 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAP 113 (248)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSS
T ss_pred cccceecCCCCCCHHHHHHHHhheecccCCCCc
Confidence 467889999999999999999888877765333
No 2
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.26 E-value=1.5e+02 Score=20.30 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019 73 AENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNK 120 (167)
Q Consensus 73 ~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NK 120 (167)
....|........++.+.....++.+++..+.++|..+..+...|.+=
T Consensus 151 ~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l 198 (237)
T d2d4ca1 151 HLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNL 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666667888888888888888888777653
No 3
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=11.74 E-value=17 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHhhcCCCCCCCCC
Q 031019 149 IAAKYRATGTTPKKLLG 165 (167)
Q Consensus 149 kA~kiR~TGk~P~s~~g 165 (167)
.+.++|+.|.+|.-+.|
T Consensus 16 ~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 16 ASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHcCCccEEEEC
Confidence 47789999999976554
No 4
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=11.08 E-value=35 Score=30.49 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 031019 160 PKKLLGCF 167 (167)
Q Consensus 160 P~s~~gCF 167 (167)
|-+.||||
T Consensus 591 PmTSCGCF 598 (729)
T d1oaoc_ 591 PMTSCGCF 598 (729)
T ss_dssp CCCCCSCC
T ss_pred CCcCchhh
Confidence 33344554
No 5
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.37 E-value=2.5e+02 Score=21.98 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=16.4
Q ss_pred eccCCCCCchhhhhhhcccCCCC
Q 031019 20 ILPLTETPDSAKKKISGEKKISG 42 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~g 42 (167)
.+.|+++|+..++||..-.-++|
T Consensus 277 ~I~l~D~~~~i~~KI~~~~~~~~ 299 (386)
T d1r6ta2 277 SIFLTDTAKQIKTKVNKHAFSGG 299 (386)
T ss_dssp CCBTTCCHHHHHHHHHHHSCCCS
T ss_pred eeeecCCHHHHHHHhhheeeecC
Confidence 56788999999999865443333
No 6
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]}
Probab=6.83 E-value=1.1e+02 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.5
Q ss_pred eeeeeeeccccceeeeeeccCCC
Q 031019 3 SVAYVFSHRSTRFMYFHILPLTE 25 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
||.|+...-...|.|.|-|-|..
T Consensus 146 SvGy~i~~~~v~F~YMH~lEL~n 168 (300)
T d1p9sa_ 146 SPGYNLKNGEVEFVYMHQIELGS 168 (300)
T ss_dssp CEEEEEETTEEEEEEEEEEECTT
T ss_pred CCceEeeCCEEEEEEEEEeecCC
Confidence 89999999999999999998753
No 7
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]}
Probab=6.55 E-value=1.1e+02 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred eeeeeeeccccceeeeeeccCCC
Q 031019 3 SVAYVFSHRSTRFMYFHILPLTE 25 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
||.|+...-...|.|.|-|-|..
T Consensus 146 SvGy~i~~~~v~F~YMHhlEL~n 168 (300)
T d2duca1 146 SVGFNIDYDCVSFCYMHHMELPT 168 (300)
T ss_dssp CEEEEEETTEEEEEEEEEEECTT
T ss_pred CCceEeeCCEEEEEEEEEeecCC
Confidence 89999999999999999998753
No 8
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Transmissible gastroenteritis virus [TaxId: 11149]}
Probab=6.41 E-value=1.1e+02 Score=24.28 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.4
Q ss_pred eeeeeeeccccceeeeeeccCCC
Q 031019 3 SVAYVFSHRSTRFMYFHILPLTE 25 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
||.|+...-...|.|.|-|-|..
T Consensus 146 SvGy~~~~~~v~F~YMH~lEL~n 168 (299)
T d1lvoa_ 146 SVGYVLENGILYFVYMHHLELGN 168 (299)
T ss_dssp CEEEEEETTEEEEEEEEEEECTT
T ss_pred CCceEeeCCEEEEEEEEEeecCC
Confidence 79999999999999999998753
No 9
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.91 E-value=1.1e+02 Score=19.20 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=15.6
Q ss_pred eeeeeeccccceeeeeeccC
Q 031019 4 VAYVFSHRSTRFMYFHILPL 23 (167)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (167)
.+.-++|....|+||.+=++
T Consensus 60 Fgs~vthe~~~~i~F~~g~~ 79 (87)
T d3e2ba1 60 FGSYVTHETRHFIYFYLGQV 79 (87)
T ss_dssp CEEEEEEETTEEEEEEETTE
T ss_pred eeEEEEecCCcEEEEEECCE
Confidence 45667999999999987443
No 10
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.75 E-value=4e+02 Score=17.68 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 031019 96 EAKLKKIEEQLERKK 110 (167)
Q Consensus 96 EA~mrK~E~KLEkkR 110 (167)
.+.|..+|.+||+++
T Consensus 105 ~~rI~~lekeLe~ik 119 (120)
T d2clyb1 105 KTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 334555566665554
Done!