BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031020
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein
From Sulfolobus Tokodaii, St0059
Length = 462
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 107/165 (64%), Gaps = 27/165 (16%)
Query: 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
+P L+TD ISLDD+FLY S W G++RQY+I +P PVLTG++ +GG+F
Sbjct: 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF---------- 368
Query: 61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPE-LKEKGSHM 119
+++D P GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE LK M
Sbjct: 369 -----HRADHP--AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLK---GWM 418
Query: 120 LQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSD 164
++++ N GG+ I+ FFVDF G A +H++R GGD +SD
Sbjct: 419 VKLNANPS-GGLEIDKEFFVDF-----GEARSHQVRLSGGDASSD 457
>pdb|2JFO|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFO|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFP|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFP|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
Length = 293
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 50 FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 109
+ +P + VT P + E +R +++ +L +L ++L C Y
Sbjct: 151 IKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLI--LGCTHY 208
Query: 110 PELKE-----KGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPG 158
P L+ GSH+ ID +E G + D P+ P HE G
Sbjct: 209 PLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEFYTTG 262
>pdb|2VVT|A Chain A, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
pdb|2VVT|B Chain B, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
Length = 290
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 50 FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 109
+ +P + VT P + E +R +++ +L +L ++L C Y
Sbjct: 151 IKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLI--LGCTHY 208
Query: 110 PELKE-----KGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPG 158
P L+ GSH+ ID +E G + D P+ P HE G
Sbjct: 209 PLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEFYTTG 262
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division
Inhibitor Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division
Inhibitor Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division
Inhibitor Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division
Inhibitor Minc From T. Maritima
Length = 210
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 27 IRQY-NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85
I+ Y N+E+ N + +GG F KG + + ++ + D+P + H G ++
Sbjct: 15 IKDYQNLEEVLNAISARITQMGGFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLEVS 74
Query: 86 QL----SLDGK 92
Q+ +++GK
Sbjct: 75 QILVGSTVEGK 85
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To
Cysteine Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV--GGLFRKGS 54
++ FS W H + + I D + PV +W+ G + RK +
Sbjct: 35 EKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNT 77
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 53 GSPVVAVTDDGQPYQSD----VPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF 108
G PV+ V DG PY +D + +V+G R+ P+ ++ +++G VT LF+
Sbjct: 164 GVPVLRVKQDGTPYVTDNGNEILDVKGLRID-DPRALEAAINGWPGVVTVGLFAQRGADL 222
Query: 109 YPELKEKGSHMLQ 121
E G L+
Sbjct: 223 CLLGTEHGVETLR 235
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 49 LFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS 88
LF K + DG Q + + GH+L G P I LS
Sbjct: 37 LFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 49 LFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS 88
LF K + DG Q + + GH+L G P I LS
Sbjct: 68 LFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 26.6 bits (57), Expect = 7.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 138 FVDFEAEPDGPALAHEMRYPGGDCTS 163
F ++EA+P PAL EMR D S
Sbjct: 86 FREWEADPTNPALREEMRIQFNDMNS 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,186,576
Number of Sequences: 62578
Number of extensions: 272865
Number of successful extensions: 512
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 17
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)