Query 031020
Match_columns 167
No_of_seqs 159 out of 443
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0918 Selenium-binding prote 100.0 2.6E-84 5.5E-89 581.3 14.1 167 1-167 310-476 (476)
2 PF05694 SBP56: 56kDa selenium 100.0 4.6E-75 9.9E-80 525.9 11.3 152 1-167 310-461 (461)
3 PF10282 Lactonase: Lactonase, 99.7 2.7E-17 5.9E-22 141.2 12.0 87 4-136 246-333 (345)
4 COG2706 3-carboxymuconate cycl 99.7 2.5E-17 5.5E-22 146.2 10.2 87 4-136 245-332 (346)
5 PRK11028 6-phosphogluconolacto 99.5 2.2E-13 4.8E-18 114.1 11.7 94 4-146 229-323 (330)
6 PF10282 Lactonase: Lactonase, 99.1 8E-10 1.7E-14 95.1 12.3 94 5-138 194-288 (345)
7 PRK11028 6-phosphogluconolacto 99.1 1.9E-09 4.1E-14 90.4 12.2 83 5-134 128-214 (330)
8 TIGR02658 TTQ_MADH_Hv methylam 98.9 7.4E-09 1.6E-13 92.3 10.1 64 9-99 52-124 (352)
9 PF02239 Cytochrom_D1: Cytochr 98.9 1.5E-08 3.2E-13 89.7 10.2 58 5-98 39-96 (369)
10 PF02239 Cytochrom_D1: Cytochr 98.6 1.3E-06 2.7E-11 77.5 13.3 117 5-145 80-216 (369)
11 TIGR02276 beta_rpt_yvtn 40-res 98.6 3.5E-07 7.6E-12 55.8 6.5 34 12-48 1-34 (42)
12 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 1.2E-06 2.6E-11 69.2 10.7 89 5-149 209-297 (300)
13 TIGR02658 TTQ_MADH_Hv methylam 98.4 2.5E-06 5.4E-11 76.2 11.0 74 6-131 251-334 (352)
14 COG2706 3-carboxymuconate cycl 98.4 3.8E-06 8.3E-11 75.4 11.4 103 6-149 194-304 (346)
15 PF08450 SGL: SMP-30/Gluconola 98.2 2E-05 4.2E-10 63.9 10.3 88 4-144 87-182 (246)
16 PF07433 DUF1513: Protein of u 98.1 8.8E-06 1.9E-10 72.0 7.8 58 9-99 57-118 (305)
17 PF08450 SGL: SMP-30/Gluconola 98.1 5.7E-05 1.2E-09 61.2 10.8 81 4-131 135-216 (246)
18 TIGR03866 PQQ_ABC_repeats PQQ- 98.1 4.3E-05 9.3E-10 60.3 9.6 60 5-99 33-92 (300)
19 PF08309 LVIVD: LVIVD repeat; 97.8 0.00015 3.3E-09 46.9 6.8 42 2-46 1-42 (42)
20 COG3391 Uncharacterized conser 97.7 0.00043 9.3E-09 61.2 10.5 61 4-99 117-179 (381)
21 PF06433 Me-amine-dh_H: Methyl 97.7 0.00016 3.4E-09 65.1 7.7 70 3-99 36-114 (342)
22 PRK02888 nitrous-oxide reducta 97.6 0.00031 6.8E-09 67.5 9.1 99 4-126 236-352 (635)
23 PRK02888 nitrous-oxide reducta 97.5 0.00044 9.6E-09 66.5 8.6 116 2-152 320-466 (635)
24 PLN02919 haloacid dehalogenase 97.4 0.00083 1.8E-08 67.3 10.1 85 5-125 685-770 (1057)
25 PLN02919 haloacid dehalogenase 97.4 0.00092 2E-08 67.0 10.1 95 5-131 742-837 (1057)
26 PF08662 eIF2A: Eukaryotic tra 97.1 0.0038 8.2E-08 50.5 9.1 59 5-99 103-163 (194)
27 COG3391 Uncharacterized conser 97.1 0.0057 1.2E-07 54.1 10.8 62 4-99 208-272 (381)
28 COG3386 Gluconolactonase [Carb 97.0 0.0069 1.5E-07 53.2 10.4 47 82-144 165-211 (307)
29 COG5276 Uncharacterized conser 97.0 0.0051 1.1E-07 55.6 9.4 45 2-49 86-130 (370)
30 COG3490 Uncharacterized protei 96.4 0.007 1.5E-07 54.5 5.6 58 9-99 120-181 (366)
31 TIGR02276 beta_rpt_yvtn 40-res 96.3 0.013 2.9E-07 35.2 5.2 38 89-147 1-38 (42)
32 PRK01742 tolB translocation pr 96.0 0.072 1.6E-06 47.4 10.2 30 3-32 248-277 (429)
33 COG5276 Uncharacterized conser 96.0 0.064 1.4E-06 48.7 9.8 39 7-48 176-214 (370)
34 cd00200 WD40 WD40 domain, foun 96.0 0.15 3.2E-06 38.1 10.3 61 3-98 136-196 (289)
35 PRK03629 tolB translocation pr 95.9 0.073 1.6E-06 47.6 10.0 31 3-33 243-275 (429)
36 PF01731 Arylesterase: Arylest 95.9 0.014 3.1E-07 42.9 4.3 31 4-34 55-85 (86)
37 KOG2055 WD40 repeat protein [G 95.8 0.05 1.1E-06 51.3 8.5 63 1-97 343-405 (514)
38 TIGR02800 propeller_TolB tol-p 95.7 0.12 2.6E-06 44.4 10.2 30 5-34 192-223 (417)
39 PRK01742 tolB translocation pr 95.7 0.093 2E-06 46.7 9.7 31 4-34 205-237 (429)
40 KOG2096 WD40 repeat protein [G 95.7 0.044 9.6E-07 50.1 7.6 61 4-98 88-151 (420)
41 PRK02889 tolB translocation pr 95.6 0.095 2.1E-06 46.7 9.5 30 5-34 198-229 (427)
42 PRK04792 tolB translocation pr 95.5 0.17 3.8E-06 45.6 10.8 29 5-33 308-338 (448)
43 PRK01029 tolB translocation pr 95.5 0.16 3.4E-06 45.8 10.3 17 82-98 329-345 (428)
44 cd00200 WD40 WD40 domain, foun 95.5 0.26 5.7E-06 36.8 9.9 31 3-34 10-40 (289)
45 PRK03629 tolB translocation pr 95.4 0.2 4.4E-06 44.8 10.6 17 82-98 333-349 (429)
46 PRK00178 tolB translocation pr 95.3 0.14 3.1E-06 44.9 9.2 32 3-34 243-276 (430)
47 KOG1539 WD repeat protein [Gen 95.3 0.081 1.8E-06 52.7 8.3 61 3-99 577-637 (910)
48 PRK04792 tolB translocation pr 95.2 0.18 3.9E-06 45.6 9.9 31 3-33 262-294 (448)
49 COG3386 Gluconolactonase [Carb 95.1 0.19 4E-06 44.3 9.5 29 6-34 166-194 (307)
50 PRK04922 tolB translocation pr 95.1 0.19 4.2E-06 44.7 9.7 33 2-34 247-281 (433)
51 PRK04922 tolB translocation pr 95.1 0.3 6.5E-06 43.5 10.7 29 5-33 294-324 (433)
52 PRK02889 tolB translocation pr 95.0 0.21 4.6E-06 44.5 9.5 31 2-32 239-269 (427)
53 PF06433 Me-amine-dh_H: Methyl 94.7 0.16 3.5E-06 46.0 8.0 69 13-125 1-75 (342)
54 PF13449 Phytase-like: Esteras 94.6 0.45 9.7E-06 41.3 10.3 79 7-107 89-172 (326)
55 PRK05137 tolB translocation pr 94.5 0.25 5.4E-06 43.9 8.6 33 2-34 245-279 (435)
56 PF03088 Str_synth: Strictosid 94.4 0.14 3E-06 37.9 5.9 57 7-98 2-75 (89)
57 PRK00178 tolB translocation pr 94.4 0.55 1.2E-05 41.2 10.6 29 5-33 289-319 (430)
58 PRK01029 tolB translocation pr 94.2 0.33 7E-06 43.8 9.0 30 5-34 329-360 (428)
59 PTZ00420 coronin; Provisional 94.2 0.61 1.3E-05 44.5 11.1 60 4-98 127-186 (568)
60 PF07433 DUF1513: Protein of u 94.1 0.81 1.8E-05 40.9 11.0 102 1-156 3-106 (305)
61 TIGR02800 propeller_TolB tol-p 93.7 0.66 1.4E-05 39.9 9.6 29 5-33 324-354 (417)
62 TIGR02604 Piru_Ver_Nterm putat 93.7 1.1 2.3E-05 39.4 11.0 17 81-99 73-89 (367)
63 smart00135 LY Low-density lipo 93.5 0.18 3.9E-06 29.8 4.2 31 4-34 10-40 (43)
64 PF08662 eIF2A: Eukaryotic tra 93.5 1.7 3.6E-05 35.1 11.1 58 4-98 61-119 (194)
65 PRK04043 tolB translocation pr 93.5 0.69 1.5E-05 41.9 9.7 28 6-33 191-221 (419)
66 PRK04043 tolB translocation pr 93.3 1.1 2.4E-05 40.5 10.8 31 3-33 233-265 (419)
67 PRK05137 tolB translocation pr 93.2 1 2.2E-05 40.1 10.2 30 4-33 291-322 (435)
68 PF09826 Beta_propel: Beta pro 93.0 0.93 2E-05 42.7 10.0 40 6-48 15-54 (521)
69 KOG0266 WD40 repeat-containing 92.8 0.99 2.2E-05 40.9 9.6 62 2-98 246-307 (456)
70 COG4946 Uncharacterized protei 92.7 0.43 9.3E-06 45.9 7.3 41 3-45 402-442 (668)
71 KOG1446 Histone H3 (Lys4) meth 92.6 1.1 2.4E-05 40.3 9.5 76 5-130 190-265 (311)
72 TIGR02604 Piru_Ver_Nterm putat 92.5 1.2 2.5E-05 39.2 9.5 46 80-126 124-173 (367)
73 KOG0315 G-protein beta subunit 92.5 0.66 1.4E-05 41.4 7.9 63 3-99 216-278 (311)
74 PRK13616 lipoprotein LpqB; Pro 91.9 1.8 3.9E-05 41.4 10.6 21 78-98 446-466 (591)
75 KOG2110 Uncharacterized conser 91.9 1.5 3.3E-05 40.5 9.6 75 3-124 174-249 (391)
76 KOG0266 WD40 repeat-containing 91.8 1.3 2.7E-05 40.2 9.1 30 4-34 290-319 (456)
77 KOG0639 Transducin-like enhanc 91.8 0.28 6.1E-06 47.3 4.9 57 6-97 513-569 (705)
78 KOG0771 Prolactin regulatory e 91.3 0.65 1.4E-05 43.0 6.7 76 4-127 283-358 (398)
79 KOG0647 mRNA export protein (c 90.5 0.57 1.2E-05 42.5 5.4 63 4-99 29-92 (347)
80 KOG0263 Transcription initiati 90.3 1.1 2.4E-05 44.2 7.6 76 4-130 579-654 (707)
81 PF03022 MRJP: Major royal jel 90.1 3.8 8.3E-05 35.4 10.0 32 3-34 61-97 (287)
82 KOG3881 Uncharacterized conser 90.0 1.1 2.4E-05 41.6 7.0 88 1-141 201-289 (412)
83 PTZ00421 coronin; Provisional 89.8 3.3 7.1E-05 38.6 10.0 30 5-34 128-157 (493)
84 KOG0271 Notchless-like WD40 re 89.6 1 2.2E-05 42.2 6.5 58 6-98 119-176 (480)
85 PF06977 SdiA-regulated: SdiA- 89.6 8.5 0.00018 33.0 11.7 79 5-133 24-102 (248)
86 KOG4499 Ca2+-binding protein R 89.6 2 4.3E-05 38.3 7.9 38 5-46 214-251 (310)
87 KOG0318 WD40 repeat stress pro 89.5 3.1 6.7E-05 40.2 9.7 23 77-99 485-507 (603)
88 PF00400 WD40: WD domain, G-be 89.5 1.4 3.1E-05 25.5 5.0 28 3-31 12-39 (39)
89 PF07676 PD40: WD40-like Beta 89.2 1.2 2.6E-05 26.7 4.6 26 3-28 9-36 (39)
90 PF05694 SBP56: 56kDa selenium 89.2 2.4 5.2E-05 40.0 8.6 85 11-124 255-341 (461)
91 KOG0772 Uncharacterized conser 89.1 1.3 2.8E-05 42.8 6.9 65 5-98 271-336 (641)
92 KOG2321 WD40 repeat protein [G 88.8 3.5 7.5E-05 40.4 9.5 34 1-34 50-83 (703)
93 KOG0293 WD40 repeat-containing 88.7 0.96 2.1E-05 42.7 5.6 100 5-129 272-379 (519)
94 PF09826 Beta_propel: Beta pro 88.7 2.5 5.3E-05 39.9 8.4 51 26-99 403-453 (521)
95 smart00135 LY Low-density lipo 88.7 1.5 3.3E-05 25.7 4.7 19 81-99 10-28 (43)
96 KOG2315 Predicted translation 88.6 1.3 2.7E-05 42.7 6.5 56 7-98 316-373 (566)
97 KOG0318 WD40 repeat stress pro 88.5 13 0.00029 36.1 13.1 90 4-98 322-424 (603)
98 PF05096 Glu_cyclase_2: Glutam 87.8 1.5 3.2E-05 38.5 6.0 66 14-98 184-249 (264)
99 PF01436 NHL: NHL repeat; Int 87.6 2 4.2E-05 24.9 4.6 26 4-30 3-28 (28)
100 PTZ00421 coronin; Provisional 87.5 19 0.00042 33.6 13.4 31 3-34 169-199 (493)
101 PF13360 PQQ_2: PQQ-like domai 87.3 4.2 9.1E-05 31.8 7.8 36 10-49 32-67 (238)
102 KOG2110 Uncharacterized conser 87.2 2.5 5.3E-05 39.1 7.2 118 2-141 218-347 (391)
103 TIGR03032 conserved hypothetic 87.1 7.9 0.00017 35.3 10.3 48 15-99 213-260 (335)
104 COG0823 TolB Periplasmic compo 87.0 1.8 3.9E-05 39.8 6.3 101 4-123 239-344 (425)
105 KOG0639 Transducin-like enhanc 86.6 3.3 7.1E-05 40.3 7.9 73 4-107 421-495 (705)
106 PF01731 Arylesterase: Arylest 86.4 3.3 7.2E-05 30.4 6.3 19 81-99 55-73 (86)
107 TIGR03606 non_repeat_PQQ dehyd 86.4 20 0.00044 33.6 12.9 93 5-131 32-130 (454)
108 PF03088 Str_synth: Strictosid 86.2 1.6 3.5E-05 32.2 4.6 33 3-35 57-89 (89)
109 PF00930 DPPIV_N: Dipeptidyl p 86.1 2.9 6.2E-05 36.3 6.8 17 82-98 45-61 (353)
110 PF10647 Gmad1: Lipoprotein Lp 86.1 16 0.00035 30.7 11.1 18 82-99 114-131 (253)
111 KOG0291 WD40-repeat-containing 85.8 4.7 0.0001 40.6 8.7 81 3-98 521-601 (893)
112 KOG0283 WD40 repeat-containing 85.6 6.1 0.00013 39.2 9.4 94 2-99 451-566 (712)
113 COG3823 Glutamine cyclotransfe 85.4 4 8.7E-05 35.8 7.3 61 16-98 187-247 (262)
114 KOG1036 Mitotic spindle checkp 85.3 5.7 0.00012 36.0 8.4 30 4-34 15-44 (323)
115 PF07995 GSDH: Glucose / Sorbo 84.8 18 0.00039 31.5 11.2 25 5-31 4-28 (331)
116 COG4946 Uncharacterized protei 84.3 10 0.00022 36.8 10.0 54 82-151 404-459 (668)
117 PF13360 PQQ_2: PQQ-like domai 83.5 14 0.0003 28.8 9.1 37 7-47 115-151 (238)
118 KOG2096 WD40 repeat protein [G 83.4 13 0.00029 34.4 10.0 115 6-125 232-382 (420)
119 PF06977 SdiA-regulated: SdiA- 83.3 7.4 0.00016 33.4 8.0 68 5-99 173-240 (248)
120 KOG0291 WD40-repeat-containing 83.2 5.3 0.00012 40.2 7.9 61 4-99 480-540 (893)
121 KOG0283 WD40 repeat-containing 83.0 8 0.00017 38.4 9.0 62 2-98 409-470 (712)
122 KOG0771 Prolactin regulatory e 81.8 9.2 0.0002 35.6 8.4 29 5-35 189-217 (398)
123 PTZ00420 coronin; Provisional 81.7 19 0.0004 34.6 10.8 32 3-34 75-106 (568)
124 KOG1407 WD40 repeat protein [F 81.4 6.6 0.00014 35.3 7.1 80 5-126 192-273 (313)
125 KOG0293 WD40 repeat-containing 80.7 4.3 9.2E-05 38.5 6.0 30 4-34 356-385 (519)
126 KOG1273 WD40 repeat protein [G 80.7 8.7 0.00019 35.5 7.8 60 4-98 25-84 (405)
127 COG0823 TolB Periplasmic compo 80.4 15 0.00033 33.7 9.4 56 9-99 288-345 (425)
128 PF00930 DPPIV_N: Dipeptidyl p 80.3 15 0.00033 31.8 9.0 77 3-98 43-119 (353)
129 KOG0315 G-protein beta subunit 79.6 19 0.00041 32.4 9.4 86 5-99 86-187 (311)
130 PF03022 MRJP: Major royal jel 79.4 14 0.0003 31.9 8.4 68 4-100 187-256 (287)
131 KOG1273 WD40 repeat protein [G 79.3 12 0.00026 34.6 8.2 31 5-36 68-98 (405)
132 KOG0306 WD40-repeat-containing 78.7 9.8 0.00021 38.4 8.0 59 5-99 511-569 (888)
133 PF02897 Peptidase_S9_N: Proly 78.7 16 0.00035 31.8 8.6 30 5-34 126-159 (414)
134 TIGR03606 non_repeat_PQQ dehyd 78.6 11 0.00025 35.2 8.1 29 6-34 82-125 (454)
135 KOG0643 Translation initiation 78.6 8.9 0.00019 34.7 7.1 29 5-34 150-178 (327)
136 KOG2139 WD40 repeat protein [G 78.2 6.9 0.00015 36.6 6.4 67 4-104 197-265 (445)
137 KOG4499 Ca2+-binding protein R 78.1 12 0.00026 33.5 7.6 61 80-161 158-218 (310)
138 KOG0772 Uncharacterized conser 77.8 7.2 0.00016 37.9 6.6 91 4-142 366-456 (641)
139 KOG0265 U5 snRNP-specific prot 77.2 3.4 7.3E-05 37.6 4.1 43 5-49 219-262 (338)
140 KOG3881 Uncharacterized conser 76.7 7.7 0.00017 36.2 6.3 61 4-98 249-309 (412)
141 KOG2055 WD40 repeat protein [G 76.2 11 0.00024 36.1 7.2 22 78-99 343-364 (514)
142 PF02333 Phytase: Phytase; In 75.1 21 0.00046 32.9 8.7 70 13-130 169-242 (381)
143 KOG0303 Actin-binding protein 75.1 28 0.00061 33.0 9.5 90 1-131 172-267 (472)
144 KOG4378 Nuclear protein COP1 [ 74.9 13 0.00028 36.2 7.5 62 3-99 209-270 (673)
145 KOG0290 Conserved WD40 repeat- 74.9 5.4 0.00012 36.4 4.7 32 6-37 200-231 (364)
146 KOG0275 Conserved WD40 repeat- 74.9 28 0.0006 32.6 9.3 123 3-152 349-487 (508)
147 KOG0295 WD40 repeat-containing 74.2 4.4 9.6E-05 37.6 4.1 29 5-34 337-365 (406)
148 KOG0288 WD40 repeat protein Ti 74.1 30 0.00065 32.8 9.5 68 1-99 340-407 (459)
149 KOG2919 Guanine nucleotide-bin 73.9 22 0.00048 33.0 8.4 114 7-127 163-308 (406)
150 PF07995 GSDH: Glucose / Sorbo 73.9 14 0.0003 32.3 6.9 31 4-34 254-290 (331)
151 PF11768 DUF3312: Protein of u 73.0 30 0.00065 33.5 9.4 62 1-99 258-319 (545)
152 KOG1520 Predicted alkaloid syn 72.9 7.3 0.00016 36.0 5.2 64 4-98 220-283 (376)
153 KOG0296 Angio-associated migra 71.7 28 0.00061 32.5 8.6 58 5-98 330-387 (399)
154 TIGR03300 assembly_YfgL outer 71.0 25 0.00055 30.1 7.8 33 13-49 64-96 (377)
155 KOG1446 Histone H3 (Lys4) meth 70.7 51 0.0011 29.9 9.8 58 4-98 102-159 (311)
156 KOG2048 WD40 repeat protein [G 70.7 16 0.00034 36.2 7.1 31 3-34 476-506 (691)
157 KOG1274 WD40 repeat protein [G 69.5 26 0.00057 35.9 8.5 30 4-34 140-169 (933)
158 KOG1063 RNA polymerase II elon 68.2 13 0.00027 37.2 5.9 60 5-98 528-591 (764)
159 KOG0265 U5 snRNP-specific prot 67.9 62 0.0014 29.6 9.8 36 2-38 47-82 (338)
160 KOG0271 Notchless-like WD40 re 67.8 32 0.00069 32.6 8.1 90 3-147 368-463 (480)
161 KOG2394 WD40 protein DMR-N9 [G 66.8 5 0.00011 39.0 2.8 43 4-50 292-336 (636)
162 TIGR03503 conserved hypothetic 66.8 14 0.0003 34.1 5.5 88 3-94 28-121 (374)
163 KOG0272 U4/U6 small nuclear ri 66.0 18 0.00039 34.3 6.2 107 4-166 263-372 (459)
164 KOG2111 Uncharacterized conser 65.6 65 0.0014 29.6 9.5 62 4-98 183-245 (346)
165 KOG0286 G-protein beta subunit 65.0 29 0.00063 31.7 7.1 63 5-107 276-338 (343)
166 PLN00181 protein SPA1-RELATED; 65.0 78 0.0017 30.6 10.5 30 4-34 577-607 (793)
167 smart00320 WD40 WD40 repeats. 64.2 17 0.00036 18.1 3.7 27 4-31 14-40 (40)
168 PF12913 SH3_6: SH3 domain of 64.1 6.9 0.00015 26.7 2.4 22 84-105 31-52 (54)
169 KOG0288 WD40 repeat protein Ti 62.6 62 0.0013 30.8 9.0 55 6-98 306-360 (459)
170 KOG0918 Selenium-binding prote 62.5 5.3 0.00011 37.7 2.1 19 5-23 391-409 (476)
171 KOG0296 Angio-associated migra 62.4 1E+02 0.0022 28.9 10.3 30 4-34 108-137 (399)
172 KOG2139 WD40 repeat protein [G 61.5 32 0.00069 32.4 6.9 84 2-98 280-364 (445)
173 TIGR03300 assembly_YfgL outer 59.8 45 0.00098 28.6 7.3 21 13-34 240-260 (377)
174 KOG0319 WD40-repeat-containing 59.6 41 0.00089 33.8 7.6 58 7-98 24-81 (775)
175 PLN00181 protein SPA1-RELATED; 59.5 98 0.0021 29.9 10.1 73 5-99 711-783 (793)
176 COG2133 Glucose/sorbosone dehy 59.4 30 0.00066 32.1 6.4 76 5-98 179-257 (399)
177 PF02897 Peptidase_S9_N: Proly 59.1 1.1E+02 0.0024 26.6 9.7 30 5-34 229-261 (414)
178 KOG1445 Tumor-specific antigen 59.0 22 0.00047 35.9 5.7 44 4-48 722-765 (1012)
179 KOG0310 Conserved WD40 repeat- 58.9 74 0.0016 30.5 8.9 59 5-99 241-299 (487)
180 KOG0282 mRNA splicing factor [ 56.2 17 0.00036 34.8 4.3 43 1-47 431-473 (503)
181 KOG1407 WD40 repeat protein [F 56.0 86 0.0019 28.4 8.4 18 81-98 108-125 (313)
182 KOG0289 mRNA splicing factor [ 55.6 63 0.0014 31.0 7.9 59 5-98 350-408 (506)
183 KOG0646 WD40 repeat protein [G 54.9 72 0.0016 30.5 8.2 32 2-34 217-248 (476)
184 KOG0279 G protein beta subunit 53.7 78 0.0017 28.8 7.8 33 2-34 15-47 (315)
185 KOG1310 WD40 repeat protein [G 53.7 1.3E+02 0.0028 30.0 9.8 30 7-36 152-181 (758)
186 PRK11138 outer membrane biogen 52.7 1E+02 0.0022 27.0 8.3 21 13-34 255-275 (394)
187 PF11462 DUF3203: Protein of u 52.5 14 0.00031 27.0 2.5 28 53-98 25-52 (74)
188 KOG0646 WD40 repeat protein [G 51.9 1.2E+02 0.0026 29.1 9.1 59 5-99 177-237 (476)
189 PF05935 Arylsulfotrans: Aryls 51.6 2E+02 0.0044 26.6 12.6 129 6-137 274-405 (477)
190 KOG0299 U3 snoRNP-associated p 51.2 32 0.0007 32.8 5.3 63 4-99 382-445 (479)
191 KOG0286 G-protein beta subunit 50.9 98 0.0021 28.4 8.0 93 5-97 189-291 (343)
192 KOG2919 Guanine nucleotide-bin 50.1 32 0.00069 32.0 4.9 36 3-38 251-286 (406)
193 KOG1034 Transcriptional repres 49.7 59 0.0013 30.2 6.5 17 82-98 356-372 (385)
194 PRK13616 lipoprotein LpqB; Pro 49.6 1.2E+02 0.0025 29.3 8.8 20 2-21 447-466 (591)
195 PF08116 Toxin_29: PhTx neurot 49.3 7.6 0.00017 23.9 0.6 11 154-164 3-13 (31)
196 KOG0650 WD40 repeat nucleolar 49.2 31 0.00067 34.3 4.9 41 3-48 567-607 (733)
197 PF08954 DUF1900: Domain of un 49.0 35 0.00076 27.0 4.5 31 9-40 17-47 (136)
198 KOG0306 WD40-repeat-containing 49.0 65 0.0014 32.8 7.1 117 3-144 455-584 (888)
199 PF14870 PSII_BNR: Photosynthe 48.7 1.6E+02 0.0036 26.0 9.1 22 3-24 145-166 (302)
200 KOG0282 mRNA splicing factor [ 48.3 1.7E+02 0.0036 28.3 9.4 95 4-99 344-452 (503)
201 PF06525 SoxE: Sulfocyanin (So 48.2 80 0.0017 26.8 6.7 69 16-94 63-132 (196)
202 TIGR02171 Fb_sc_TIGR02171 Fibr 47.7 1E+02 0.0022 31.8 8.4 39 86-134 356-395 (912)
203 PF10647 Gmad1: Lipoprotein Lp 47.3 1.7E+02 0.0037 24.5 9.9 30 4-33 113-144 (253)
204 KOG2394 WD40 protein DMR-N9 [G 47.1 1.6E+02 0.0035 29.1 9.3 96 6-127 223-322 (636)
205 PF05787 DUF839: Bacterial pro 45.2 2.6E+02 0.0057 26.6 10.4 29 6-34 353-400 (524)
206 KOG0322 G-protein beta subunit 44.9 30 0.00065 31.3 3.8 28 5-33 254-281 (323)
207 KOG0319 WD40-repeat-containing 44.4 38 0.00082 34.1 4.8 31 80-131 22-52 (775)
208 KOG2106 Uncharacterized conser 43.7 1.1E+02 0.0024 30.0 7.7 32 4-36 449-480 (626)
209 COG3204 Uncharacterized protei 43.4 1.9E+02 0.0041 26.4 8.7 41 4-48 87-127 (316)
210 PF15492 Nbas_N: Neuroblastoma 43.4 2.2E+02 0.0048 25.6 9.0 17 83-99 47-63 (282)
211 PF04053 Coatomer_WDAD: Coatom 42.2 1.5E+02 0.0034 27.5 8.2 29 82-125 147-175 (443)
212 KOG0278 Serine/threonine kinas 41.5 2.8E+02 0.006 25.3 9.5 71 3-109 144-215 (334)
213 KOG1520 Predicted alkaloid syn 40.9 28 0.00061 32.2 3.2 17 82-98 221-237 (376)
214 KOG0284 Polyadenylation factor 40.5 77 0.0017 30.2 5.9 30 4-34 182-211 (464)
215 TIGR03118 PEPCTERM_chp_1 conse 40.5 1.6E+02 0.0035 27.0 7.8 21 13-33 150-170 (336)
216 KOG1274 WD40 repeat protein [G 40.1 1.3E+02 0.0028 31.1 7.8 37 5-42 16-53 (933)
217 KOG0267 Microtubule severing p 39.8 39 0.00085 34.1 4.1 89 7-99 159-258 (825)
218 COG2133 Glucose/sorbosone dehy 39.5 1.5E+02 0.0032 27.6 7.6 30 80-124 367-396 (399)
219 COG3490 Uncharacterized protei 39.4 98 0.0021 28.6 6.3 37 59-98 95-132 (366)
220 COG4247 Phy 3-phytase (myo-ino 39.2 1.5E+02 0.0032 27.2 7.3 27 16-43 170-196 (364)
221 PF14298 DUF4374: Domain of un 39.0 1.8E+02 0.0039 27.5 8.2 66 84-160 279-348 (435)
222 KOG0643 Translation initiation 39.0 2.6E+02 0.0055 25.6 8.7 70 8-124 58-127 (327)
223 KOG0294 WD40 repeat-containing 36.5 1.6E+02 0.0035 27.3 7.2 30 4-34 129-158 (362)
224 KOG2048 WD40 repeat protein [G 36.1 2.5E+02 0.0054 28.2 8.8 78 6-131 432-509 (691)
225 KOG0279 G protein beta subunit 36.1 47 0.001 30.1 3.7 30 4-34 65-94 (315)
226 COG4590 ABC-type uncharacteriz 35.4 33 0.00071 33.6 2.8 28 5-34 223-250 (733)
227 KOG4497 Uncharacterized conser 35.3 1.3E+02 0.0028 28.3 6.5 99 2-139 91-194 (447)
228 PF13570 PQQ_3: PQQ-like domai 35.2 61 0.0013 19.3 3.1 21 12-33 19-39 (40)
229 KOG3914 WD repeat protein WDR4 34.6 33 0.00071 32.0 2.6 25 4-29 153-177 (390)
230 PF13449 Phytase-like: Esteras 34.0 3.1E+02 0.0068 23.7 8.9 21 4-24 21-42 (326)
231 TIGR03094 sulfo_cyanin sulfocy 34.0 1.6E+02 0.0034 25.2 6.3 82 16-105 61-142 (195)
232 KOG0640 mRNA cleavage stimulat 34.0 1.4E+02 0.0031 27.9 6.5 28 6-34 220-247 (430)
233 KOG1063 RNA polymerase II elon 33.9 62 0.0013 32.6 4.4 33 5-38 575-607 (764)
234 COG2319 FOG: WD40 repeat [Gene 33.9 2.2E+02 0.0047 21.9 7.2 32 3-34 156-187 (466)
235 KOG1587 Cytoplasmic dynein int 33.8 2.2E+02 0.0048 27.6 8.0 84 2-103 242-327 (555)
236 TIGR03118 PEPCTERM_chp_1 conse 33.7 2E+02 0.0043 26.5 7.3 39 7-46 27-69 (336)
237 KOG0973 Histone transcription 33.6 91 0.002 32.3 5.6 28 5-33 132-159 (942)
238 KOG0321 WD40 repeat-containing 33.1 1E+02 0.0023 30.8 5.8 27 7-34 276-302 (720)
239 PF04841 Vps16_N: Vps16, N-ter 32.9 3.5E+02 0.0075 24.5 8.8 89 5-141 219-318 (410)
240 KOG0268 Sof1-like rRNA process 32.9 1.7E+02 0.0036 27.7 6.8 40 5-47 190-229 (433)
241 cd04480 RPA1_DBD_A_like RPA1_D 32.3 1.7E+02 0.0037 20.2 6.4 59 82-143 21-82 (86)
242 PRK10115 protease 2; Provision 32.3 1.3E+02 0.0028 29.3 6.3 21 5-25 129-149 (686)
243 TIGR02608 delta_60_rpt delta-6 31.9 1E+02 0.0023 20.8 4.1 17 83-99 4-20 (55)
244 KOG1240 Protein kinase contain 31.8 1.7E+02 0.0036 31.6 7.2 30 5-34 1051-1080(1431)
245 cd00216 PQQ_DH Dehydrogenases 31.4 2E+02 0.0043 26.4 7.1 34 13-50 405-438 (488)
246 KOG1539 WD repeat protein [Gen 31.2 1.8E+02 0.0038 30.1 7.1 40 3-45 245-284 (910)
247 PF08553 VID27: VID27 cytoplas 31.2 1.1E+02 0.0024 30.9 5.8 17 82-98 621-637 (794)
248 PF05096 Glu_cyclase_2: Glutam 30.9 3E+02 0.0066 24.3 7.8 87 14-159 99-185 (264)
249 KOG0316 Conserved WD40 repeat- 30.6 1.4E+02 0.0031 26.9 5.7 71 16-140 156-232 (307)
250 COG4590 ABC-type uncharacteriz 30.1 63 0.0014 31.7 3.7 14 85-98 226-239 (733)
251 KOG4659 Uncharacterized conser 30.1 4.2E+02 0.0091 29.4 9.7 99 15-143 1442-1547(1899)
252 PF04053 Coatomer_WDAD: Coatom 29.9 87 0.0019 29.1 4.5 18 81-98 34-51 (443)
253 KOG2111 Uncharacterized conser 29.8 98 0.0021 28.5 4.7 37 3-40 227-263 (346)
254 KOG0278 Serine/threonine kinas 29.1 94 0.002 28.2 4.4 31 2-33 267-297 (334)
255 PF12566 DUF3748: Protein of u 28.8 71 0.0015 25.4 3.2 29 69-98 58-86 (122)
256 PF10168 Nup88: Nuclear pore c 28.7 4.4E+02 0.0095 26.3 9.3 33 13-46 160-192 (717)
257 KOG2119 Predicted bile acid be 28.2 1.2E+02 0.0027 30.9 5.4 105 20-162 62-168 (879)
258 KOG4460 Nuclear pore complex, 28.2 1.8E+02 0.0039 29.0 6.4 109 15-131 182-301 (741)
259 PF04762 IKI3: IKI3 family; I 27.2 5.1E+02 0.011 26.5 9.7 21 78-98 119-139 (928)
260 COG1497 Predicted transcriptio 27.1 2.6E+02 0.0057 24.9 6.7 55 7-61 110-165 (260)
261 KOG1036 Mitotic spindle checkp 26.4 2.5E+02 0.0055 25.7 6.7 16 83-98 137-152 (323)
262 KOG0321 WD40 repeat-containing 26.0 2.5E+02 0.0053 28.3 6.9 28 8-35 223-250 (720)
263 PF02333 Phytase: Phytase; In 25.9 5.4E+02 0.012 23.9 11.2 31 2-33 207-237 (381)
264 PRK11138 outer membrane biogen 25.9 2.2E+02 0.0047 24.9 6.1 18 14-32 120-137 (394)
265 KOG1034 Transcriptional repres 25.8 1.8E+02 0.004 27.1 5.7 32 3-34 136-167 (385)
266 KOG0272 U4/U6 small nuclear ri 25.7 2.2E+02 0.0047 27.2 6.3 29 5-34 348-376 (459)
267 KOG2314 Translation initiation 25.6 2.5E+02 0.0054 28.0 6.9 29 5-33 495-525 (698)
268 KOG1538 Uncharacterized conser 25.4 1.5E+02 0.0033 30.4 5.4 30 4-35 14-43 (1081)
269 KOG0299 U3 snoRNP-associated p 25.2 91 0.002 29.9 3.8 34 5-39 205-238 (479)
270 KOG1009 Chromatin assembly com 25.1 75 0.0016 30.1 3.2 78 6-97 127-204 (434)
271 KOG1408 WD40 repeat protein [F 25.0 1.7E+02 0.0036 30.2 5.7 60 5-98 81-149 (1080)
272 COG4257 Vgb Streptogramin lyas 24.5 3.9E+02 0.0085 24.7 7.5 57 6-98 65-121 (353)
273 cd02955 SSP411 TRX domain, SSP 24.5 1E+02 0.0022 23.6 3.4 24 2-25 79-102 (124)
274 PRK13239 alkylmercury lyase; P 24.3 1.7E+02 0.0038 24.8 5.0 56 79-140 77-135 (206)
275 KOG1188 WD40 repeat protein [G 24.2 3.3E+02 0.0073 25.4 7.1 33 2-34 70-103 (376)
276 PF13970 DUF4221: Domain of un 23.7 4E+02 0.0086 23.0 7.3 36 10-48 51-87 (333)
277 COG5354 Uncharacterized protei 23.6 2.5E+02 0.0053 27.6 6.3 37 7-45 320-358 (561)
278 PF11715 Nup160: Nucleoporin N 23.2 5.9E+02 0.013 23.4 9.6 39 3-45 215-257 (547)
279 KOG4547 WD40 repeat-containing 22.7 1.7E+02 0.0037 28.6 5.1 43 2-47 144-193 (541)
280 KOG0650 WD40 repeat nucleolar 22.6 6E+02 0.013 25.7 8.8 44 3-50 401-444 (733)
281 KOG0645 WD40 repeat protein [G 22.2 6.1E+02 0.013 23.2 9.0 73 8-127 67-139 (312)
282 KOG4497 Uncharacterized conser 21.5 3.5E+02 0.0076 25.5 6.7 18 82-99 94-111 (447)
283 KOG0276 Vesicle coat complex C 20.9 1.7E+02 0.0038 29.5 4.9 18 82-99 354-371 (794)
284 COG3564 Uncharacterized protei 20.6 2.1E+02 0.0045 22.4 4.3 40 84-134 55-96 (116)
No 1
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-84 Score=581.28 Aligned_cols=167 Identities=74% Similarity=1.296 Sum_probs=166.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
||||||||+||+||||||||||+||+||||||+||.+|||.|||++||++.++++|+|++++++..|||+++||||+++|
T Consensus 310 MP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~G 389 (476)
T KOG0918|consen 310 MPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRG 389 (476)
T ss_pred cchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCC
Q 031020 81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD 160 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggd 160 (167)
||||||||+|||||||||||||+||+|||||++++|++|+|+|||+++|+|+||++|+|||++||+||+|||||||||||
T Consensus 390 GPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL~hemRypggd 469 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSLAHEMRYPGGD 469 (476)
T ss_pred CceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcchhhhcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccC
Q 031020 161 CTSDIWI 167 (167)
Q Consensus 161 ctsd~~~ 167 (167)
|||||||
T Consensus 470 Ctsdiwi 476 (476)
T KOG0918|consen 470 CTSDIWI 476 (476)
T ss_pred ccccccC
Confidence 9999997
No 2
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=100.00 E-value=4.6e-75 Score=525.94 Aligned_cols=152 Identities=72% Similarity=1.282 Sum_probs=100.8
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
||+|+|||+||+||||||||||+||+||||||+||++|||+|||++||++.++ +.+.|+|+++.|
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~---------------~~~~v~g~~l~G 374 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG---------------DHPVVKGKRLRG 374 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-----------------TTS------S
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC---------------CCccccccccCC
Confidence 49999999999999999999999999999999999999999999999988765 668899999999
Q ss_pred CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCC
Q 031020 81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD 160 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggd 160 (167)
||||+|||+|||||||||||||+||+||||+++++|++|+++|||+++|+|+||++|+|||++||+||+|||||||||||
T Consensus 375 gPqMvqlS~DGkRlYvTnSLys~WD~qfYP~~~~~g~~m~~iDvd~~~Ggl~l~~~F~VDFg~ep~Gp~raHe~R~pgGD 454 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTNSLYSAWDKQFYPDGVKNGSWMLKIDVDTENGGLTLDEDFLVDFGKEPDGPARAHEMRYPGGD 454 (461)
T ss_dssp ----EEE-TTSSEEEEE----HHHHHHHSTT------EEEEEEE-TT-S-EEEEEEEEEE-TT-----SEEEEEEETT--
T ss_pred CCCeEEEccCCeEEEEEeecccccccccCCCccccccEEEEEEecCCCCceeeCccceecccccccccccceeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccC
Q 031020 161 CTSDIWI 167 (167)
Q Consensus 161 ctsd~~~ 167 (167)
||||||+
T Consensus 455 ctSDi~~ 461 (461)
T PF05694_consen 455 CTSDIWC 461 (461)
T ss_dssp TTT---S
T ss_pred ccccccC
Confidence 9999996
No 3
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.73 E-value=2.7e-17 Score=141.18 Aligned_cols=87 Identities=28% Similarity=0.478 Sum_probs=75.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEecc-CCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIE-DPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIs-dp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
.+++|+||||+||||||||++++|.+|+|+ +...+++++.++++|.. |
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-------------------------------P 294 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-------------------------------P 294 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-------------------------------E
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-------------------------------c
Confidence 589999999999999999999999999995 34678889999998843 9
Q ss_pred ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCc
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPN 136 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~ 136 (167)
|.|++|+||++||||| ++++.|..+++|+++|.|+....
T Consensus 295 r~~~~s~~g~~l~Va~---------------~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVAN---------------QDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEE-TTSSEEEEEE---------------TTTTEEEEEEEETTTTEEEEEEE
T ss_pred cEEEEeCCCCEEEEEe---------------cCCCeEEEEEEeCCCCcEEEecc
Confidence 9999999999999999 35788999999999999975543
No 4
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.5e-17 Score=146.18 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=77.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
-.|+|+||+||||||+|||+|++|+.|.|+.. ....++++++++|.+ |
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-------------------------------P 293 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-------------------------------P 293 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-------------------------------C
Confidence 36899999999999999999999999999964 346679999999954 9
Q ss_pred ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCc
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPN 136 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~ 136 (167)
|.|.++++|++|+||| ++++++..+.+|++||.|++-..
T Consensus 294 R~F~i~~~g~~Liaa~---------------q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 294 RDFNINPSGRFLIAAN---------------QKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ccceeCCCCCEEEEEc---------------cCCCcEEEEEEcCCCceEEeccc
Confidence 9999999999999999 47889999999999999965443
No 5
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=2.2e-13 Score=114.06 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=76.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
..++|.+|||+|||||+|+.++.|.+|+++.. ...++++.+.+|. +|
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--------------------------------~p 276 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--------------------------------QP 276 (330)
T ss_pred cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--------------------------------cC
Confidence 34679999999999999999999999999753 3457788888753 29
Q ss_pred ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCC
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD 146 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~ 146 (167)
+.|++|+||++|||+|+ .++++..+++|.++|.|+.-..|.+ +..|.
T Consensus 277 ~~~~~~~dg~~l~va~~---------------~~~~v~v~~~~~~~g~l~~~~~~~~--g~~P~ 323 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQ---------------KSHHISVYEIDGETGLLTELGRYAV--GQGPM 323 (330)
T ss_pred CceEECCCCCEEEEEEc---------------cCCcEEEEEEcCCCCcEEEcccccc--CCCce
Confidence 99999999999999993 4667888899889999987776655 44443
No 6
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=8e-10 Score=95.13 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=72.6
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC-CCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-p~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
+-.|++|+|++++||.|-+.+.|.+|++.. ....+.+..+.+... ..+|. -.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~----------------------~~~~~---~~~~ 248 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE----------------------GFTGE---NAPA 248 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----------------------TSCSS---SSEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----------------------ccccc---CCce
Confidence 457999999999999999999999999993 345566777776541 11122 1499
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCcee
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFF 138 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~ 138 (167)
.+.+|||||+|||+| +..+.|..+++|+++|.|++-..+.
T Consensus 249 ~i~ispdg~~lyvsn---------------r~~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 249 EIAISPDGRFLYVSN---------------RGSNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp EEEE-TTSSEEEEEE---------------CTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred eEEEecCCCEEEEEe---------------ccCCEEEEEEEecCCCceEEEEEEe
Confidence 999999999999999 4578899999999999998665543
No 7
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=1.9e-09 Score=90.38 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE----EEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL----TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl----vg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
+..+++|||+|+|||+|.+.+.|++||+......+. .-++.. |.
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~----------------------------g~---- 175 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE----------------------------GA---- 175 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC----------------------------CC----
Confidence 456789999999999999999999999975222110 011222 22
Q ss_pred CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeec
Q 031020 81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN 134 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~ 134 (167)
+|+.+.++|||++|||+| +.++.+..+|++..+|.+++-
T Consensus 176 ~p~~~~~~pdg~~lyv~~---------------~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVN---------------ELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCceEEECCCCCEEEEEe---------------cCCCEEEEEEEeCCCCCEEEE
Confidence 399999999999999999 357788889998777776543
No 8
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.92 E-value=7.4e-09 Score=92.32 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred EEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020 9 LISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 79 (167)
Q Consensus 9 ~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~ 79 (167)
++|+|+|+|||+|- ..+.|.+|| +++.+.+++|.+|++ |+.. -|..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D---~~t~~~~~~i~~p~~------------------p~~~--~~~~-- 106 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVID---PQTHLPIADIELPEG------------------PRFL--VGTY-- 106 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEE---CccCcEEeEEccCCC------------------chhh--ccCc--
Confidence 49999999999999 899999999 456999999999873 1111 1333
Q ss_pred CCCceEEEccCCCEEEEEeC
Q 031020 80 GGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNs 99 (167)
|.+|+||+|||+|||+|.
T Consensus 107 --~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 107 --PWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred --cceEEECCCCCEEEEecC
Confidence 779999999999999993
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=1.5e-08 Score=89.68 Aligned_cols=58 Identities=34% Similarity=0.575 Sum_probs=46.9
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
.+.+.+|+|+|+|||+|+ .|.|.++|+. +.+++.+|.+|. . |+.
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~---~~~~v~~i~~G~----------------------------~----~~~ 82 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLA---TGKVVATIKVGG----------------------------N----PRG 82 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETT---SSSEEEEEE-SS----------------------------E----EEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECC---cccEEEEEecCC----------------------------C----cce
Confidence 456788999999999998 5899999955 478999999988 3 999
Q ss_pred EEEccCCCEEEEEe
Q 031020 85 IQLSLDGKRLYVTN 98 (167)
Q Consensus 85 ~~LS~DGkrLyVaN 98 (167)
+++|+|||+|||+|
T Consensus 83 i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 83 IAVSPDGKYVYVAN 96 (369)
T ss_dssp EEE--TTTEEEEEE
T ss_pred EEEcCCCCEEEEEe
Confidence 99999999999999
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.58 E-value=1.3e-06 Score=77.54 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=67.4
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeec-------------CCc---eeEeeCCCCCC--
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRK-------------GSP---VVAVTDDGQPY-- 66 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~-------------~~~---v~v~~~~~~~~-- 66 (167)
+-.|.+|+|||+|||+|+..+.|.++|. ++.+++.+|++++.-.. ..+ +.+++..+.+.
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~---~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDA---ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEET---TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCceeEecc---ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4579999999999999999999999994 45888999998864321 112 11122111111
Q ss_pred --CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020 67 --QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE 144 (167)
Q Consensus 67 --~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~ 144 (167)
.+.+..++-.+..--|.++.+++|||++++|+. ....|..+|. +++++. ..+|.++.
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~---------------~sn~i~viD~--~~~k~v----~~i~~g~~ 215 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN---------------GSNKIAVIDT--KTGKLV----ALIDTGKK 215 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG---------------GGTEEEEEET--TTTEEE----EEEE-SSS
T ss_pred eccccccceeeecccccccccccCcccceeeeccc---------------ccceeEEEee--ccceEE----EEeecccc
Confidence 122222222223334999999999999999872 2446666665 777764 25677764
Q ss_pred C
Q 031020 145 P 145 (167)
Q Consensus 145 p 145 (167)
|
T Consensus 216 p 216 (369)
T PF02239_consen 216 P 216 (369)
T ss_dssp B
T ss_pred c
Confidence 4
No 11
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=98.55 E-value=3.5e-07 Score=55.79 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred cCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 12 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 12 ~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
||+|+||||||.+++|.++|. .+.+..+++.+|.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECCC
Confidence 689999999999999999985 4588999999965
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.53 E-value=1.2e-06 Score=69.15 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=64.7
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+..|.+|+|++++|+++...+.|++||+.. .++...+..++ .|..
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~--------------------------------~~~~ 253 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQ--------------------------------RVWQ 253 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCC--------------------------------Ccce
Confidence 357899999999999988888999999753 45555554443 2889
Q ss_pred EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCc
Q 031020 85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPA 149 (167)
Q Consensus 85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~ 149 (167)
+.+||||++||++|+ ..+.+..+|+ +++.. -..+- .+++|+|-+
T Consensus 254 ~~~~~~g~~l~~~~~---------------~~~~i~v~d~--~~~~~--~~~~~--~~~~~~~~~ 297 (300)
T TIGR03866 254 LAFTPDEKYLLTTNG---------------VSNDVSVIDV--AALKV--IKSIK--VGRLPWGVV 297 (300)
T ss_pred EEECCCCCEEEEEcC---------------CCCeEEEEEC--CCCcE--EEEEE--cccccceeE
Confidence 999999999999983 3556777887 55553 22222 367888733
No 13
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.42 E-value=2.5e-06 Score=76.25 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=59.3
Q ss_pred eEEEEecCCCEEEEEe---------CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020 6 TDFLISLDDRFLYFSN---------WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH 76 (167)
Q Consensus 6 tdI~IS~DdRfLYVSn---------w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~ 76 (167)
--|++++|++.|||++ -..+.|+++| .++.|.+.+|.+|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD---~~t~kvi~~i~vG~---------------------------- 299 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD---AKTGKRLRKIELGH---------------------------- 299 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE---CCCCeEEEEEeCCC----------------------------
Confidence 3499999999999954 1226899999 56699999999976
Q ss_pred cCCCCCceEEEccCCC-EEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 77 RLRGGPQMIQLSLDGK-RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 77 ~~~g~P~~~~LS~DGk-rLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
. |..+++|+||| +|||||. .++.+..||+ .+++.
T Consensus 300 ~----~~~iavS~Dgkp~lyvtn~---------------~s~~VsViD~--~t~k~ 334 (352)
T TIGR02658 300 E----IDSINVSQDAKPLLYALST---------------GDKTLYIFDA--ETGKE 334 (352)
T ss_pred c----eeeEEECCCCCeEEEEeCC---------------CCCcEEEEEC--cCCeE
Confidence 3 99999999999 9999993 4556777887 66654
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=3.8e-06 Score=75.40 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=71.5
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE--EEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL--TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl--vg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
--|+++|++||.|+-|-+.++|.+|..+.. ..++ ...+.+ .|+. ..|.. |-.
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~t--------------------lP~d--F~g~~---~~a 247 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDT--------------------LPED--FTGTN---WAA 247 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeecc--------------------Cccc--cCCCC---cee
Confidence 469999999999999999999999999853 2332 222221 2322 12222 467
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCce------eEeccCCCCCCc
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNF------FVDFEAEPDGPA 149 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F------~vDf~~~p~gp~ 149 (167)
.+.+|+|||+|||+|. --+.|..+.||+.+|.|++.... -=||.--|.|=.
T Consensus 248 aIhis~dGrFLYasNR---------------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 248 AIHISPDGRFLYASNR---------------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred EEEECCCCCEEEEecC---------------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 8899999999999993 34577789999899988765433 335554455433
No 15
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.18 E-value=2e-05 Score=63.92 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=57.4
Q ss_pred ceeEEEEecCCCEEEEEeCCC--------CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccC
Q 031020 4 LITDFLISLDDRFLYFSNWLH--------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 75 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~h--------g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g 75 (167)
.+-|+++++||+ ||+++-.. |.|.+++-. .+ +..+..+-
T Consensus 87 ~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~-~~~~~~~~--------------------------- 133 (246)
T PF08450_consen 87 RPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GK-VTVVADGL--------------------------- 133 (246)
T ss_dssp EEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SE-EEEEEEEE---------------------------
T ss_pred CCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----Ce-EEEEecCc---------------------------
Confidence 457999999999 89987543 456666633 22 22222211
Q ss_pred ccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020 76 HRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE 144 (167)
Q Consensus 76 ~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~ 144 (167)
..|+-+++|+||+.|||+++ ....|.+++.|..++.+. +...++++...
T Consensus 134 ----~~pNGi~~s~dg~~lyv~ds---------------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (246)
T PF08450_consen 134 ----GFPNGIAFSPDGKTLYVADS---------------FNGRIWRFDLDADGGELS-NRRVFIDFPGG 182 (246)
T ss_dssp ----SSEEEEEEETTSSEEEEEET---------------TTTEEEEEEEETTTCCEE-EEEEEEE-SSS
T ss_pred ----ccccceEECCcchheeeccc---------------ccceeEEEecccccccee-eeeeEEEcCCC
Confidence 12999999999999999995 466799999986666554 44444676554
No 16
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=8.8e-06 Score=71.98 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=51.3
Q ss_pred EEecCCCEEEEEe----CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 9 LISLDDRFLYFSN----WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 9 ~IS~DdRfLYVSn----w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
.+|+|||+||++- -+.|-|.+||.. ...+.+++.+++|. +|-.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GPHe 103 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GPHE 103 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCc-------------------------------Chhh
Confidence 6899999999994 467999999987 36888999999994 3999
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
+.+.+||+.|.|||-
T Consensus 104 l~l~pDG~tLvVANG 118 (305)
T PF07433_consen 104 LLLMPDGETLVVANG 118 (305)
T ss_pred EEEcCCCCEEEEEcC
Confidence 999999999999994
No 17
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.06 E-value=5.7e-05 Score=61.21 Aligned_cols=81 Identities=21% Similarity=0.471 Sum_probs=56.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
.+-.|++|+|++.|||++-..+.|.+|+++.+.. ++.. ++... +. ...|.|
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~~~~~--~~-------------------------~~~g~p 186 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELSNRRVFID--FP-------------------------GGPGYP 186 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEEEEEEEEE---S-------------------------SSSCEE
T ss_pred cccceEECCcchheeecccccceeEEEecccccc-ceeeeeeEEE--cC-------------------------CCCcCC
Confidence 3568999999999999999999999999985332 2221 22211 10 111349
Q ss_pred ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
.-|+++.+| +||||.- .++.+.++|.+ |.+
T Consensus 187 DG~~vD~~G-~l~va~~---------------~~~~I~~~~p~---G~~ 216 (246)
T PF08450_consen 187 DGLAVDSDG-NLWVADW---------------GGGRIVVFDPD---GKL 216 (246)
T ss_dssp EEEEEBTTS--EEEEEE---------------TTTEEEEEETT---SCE
T ss_pred CcceEcCCC-CEEEEEc---------------CCCEEEEECCC---ccE
Confidence 999999999 5899972 46678878763 654
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.05 E-value=4.3e-05 Score=60.32 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=47.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+..+.+|+|++.||+++...+.|+.||+.. .++..++..+. . |..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~----------------------------~----~~~ 77 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT---GEVIGTLPSGP----------------------------D----PEL 77 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCC---CcEEEeccCCC----------------------------C----ccE
Confidence 346889999999999998899999999654 44444444322 2 778
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
+.+++||++||++++
T Consensus 78 ~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 78 FALHPNGKILYIANE 92 (300)
T ss_pred EEECCCCCEEEEEcC
Confidence 999999999999985
No 19
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=97.77 E-value=0.00015 Score=46.91 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=33.2
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 46 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~ 46 (167)
|+-+.+|.++ |.++||+.+. +.+.++||+||.+|++++++.+
T Consensus 1 ~G~a~~v~v~--g~yaYva~~~-~Gl~IvDISnPs~P~~v~~~~T 42 (42)
T PF08309_consen 1 GGDARDVAVS--GNYAYVADGN-NGLVIVDISNPSNPVLVGSYDT 42 (42)
T ss_pred CceEEEEEEE--CCEEEEEeCC-CCEEEEECCCCCCCEEEEEecC
Confidence 3445555554 6799999875 5689999999999999999864
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00043 Score=61.22 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=52.3
Q ss_pred ceeEEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
.+..+++++|++++||+|-+ .+.|.++| +...++...+++|. .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid---~~t~~~~~~~~vG~----------------------------~---- 161 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVID---AATNKVTATIPVGN----------------------------T---- 161 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEe---CCCCeEEEEEecCC----------------------------C----
Confidence 56789999999999999984 67888666 66788888888876 2
Q ss_pred CceEEEccCCCEEEEEeC
Q 031020 82 PQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNs 99 (167)
|-.+.++++|+++||+|+
T Consensus 162 P~~~a~~p~g~~vyv~~~ 179 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNS 179 (381)
T ss_pred cceEEECCCCCeEEEEec
Confidence 889999999999999993
No 21
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.67 E-value=0.00016 Score=65.08 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=47.7
Q ss_pred CceeEEEEecCCCEEEEEeC-------C--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccc
Q 031020 3 GLITDFLISLDDRFLYFSNW-------L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV 73 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw-------~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~ 73 (167)
++.+.+++|+|+|++|+++= + .+-|.+|| +.+.+..+.|.+=++ | ..-
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D---~~TL~~~~EI~iP~k------------------~--R~~ 92 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD---TQTLSPTGEIEIPPK------------------P--RAQ 92 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE---TTTTEEEEEEEETTS---------------------B--
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe---cCcCcccceEecCCc------------------c--hhe
Confidence 45678999999999998652 2 35677888 556888888876441 0 111
Q ss_pred cCccCCCCCceEEEccCCCEEEEEeC
Q 031020 74 QGHRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 74 ~g~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
-+-. +++++||.|||+|||.|-
T Consensus 93 ~~~~----~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 93 VVPY----KNMFALSADGKFLYVQNF 114 (342)
T ss_dssp BS------GGGEEE-TTSSEEEEEEE
T ss_pred eccc----ccceEEccCCcEEEEEcc
Confidence 1123 999999999999999993
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.60 E-value=0.00031 Score=67.50 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=56.3
Q ss_pred ceeEEEEecCCCEEEEEeC---C-----------CCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCC--CC
Q 031020 4 LITDFLISLDDRFLYFSNW---L-----------HGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQ--PY 66 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw---~-----------hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~--~~ 66 (167)
-+--+.+|+||+++|++|- . .+.+..|++..-+...-.| ...++ +..|.|+..... ..
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~ 310 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAG 310 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCC
Confidence 3445789999999999983 1 2233444432100000001 11111 245777765430 01
Q ss_pred -CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeC
Q 031020 67 -QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS 126 (167)
Q Consensus 67 -~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~ 126 (167)
.--.-..-|+. |.-+.+|||||++|||| +-+.++-.||+..
T Consensus 311 ~~v~~yIPVGKs----PHGV~vSPDGkylyVan---------------klS~tVSVIDv~k 352 (635)
T PRK02888 311 SALTRYVPVPKN----PHGVNTSPDGKYFIANG---------------KLSPTVTVIDVRK 352 (635)
T ss_pred cceEEEEECCCC----ccceEECCCCCEEEEeC---------------CCCCcEEEEEChh
Confidence 11112334566 99999999999999999 3466777788853
No 23
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.49 E-value=0.00044 Score=66.48 Aligned_cols=116 Identities=21% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC---------CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcc
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN---------PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 72 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~---------pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~ 72 (167)
|-.+-.|.+|||||++|++|.+.++|.++|++.-.. -.+++++.+|=
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl------------------------ 375 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL------------------------ 375 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC------------------------
Confidence 445668999999999999999999999999885221 12466776643
Q ss_pred ccCccCCCCCceEEEccCCCEEEEEeCCCc---cccccc----cccccccCcEEEE-EEeeCCCCCe--------eecCc
Q 031020 73 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFS---AWDCQF----YPELKEKGSHMLQ-IDVNSEKGGM--------AINPN 136 (167)
Q Consensus 73 ~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s---~wD~Qf----yp~~~~~g~~~~~-~dvD~~~G~l--------~l~~~ 136 (167)
+|...+++.+|. .|+|=.|=| .|+-+- |-- ++...++. +||--.-|.+ +-+.+
T Consensus 376 --------GPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g--~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk 444 (635)
T PRK02888 376 --------GPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKG--EKVDPIVQKLDVHYQPGHNHASMGETKEADGK 444 (635)
T ss_pred --------CcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhcc--ccCCcceecccCCCccceeeecCCCcCCCCCC
Confidence 399999999986 777653322 365221 100 11122333 5554333433 34677
Q ss_pred eeEeccC------CCCCCccee
Q 031020 137 FFVDFEA------EPDGPALAH 152 (167)
Q Consensus 137 F~vDf~~------~p~gp~~~h 152 (167)
|+|=..| .|-||+.++
T Consensus 445 ~l~~~nk~skdrfl~vgpl~pe 466 (635)
T PRK02888 445 WLVSLNKFSKDRFLPVGPLHPE 466 (635)
T ss_pred EEEEccccccccccCCCCCCCC
Confidence 7775544 467777654
No 24
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.44 E-value=0.00083 Score=67.29 Aligned_cols=85 Identities=27% Similarity=0.317 Sum_probs=55.9
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC-ceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG-GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G-G~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
+.+|++++++..|||++++.+.|++||..+ .... +..| |... ....... ..... ..|.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~---g~v~--~~~G~G~~~-----------~~~g~~~-~~~~~----~~P~ 743 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISD---GVTR--VFSGDGYER-----------NLNGSSG-TSTSF----AQPS 743 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCC---CeEE--EEecCCccc-----------cCCCCcc-ccccc----cCcc
Confidence 578999999999999999999999999765 2221 1211 1000 0000000 00011 2499
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 125 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD 125 (167)
.+++++||++||||++ .+..|.++|.+
T Consensus 744 GIavspdG~~LYVADs---------------~n~~Irv~D~~ 770 (1057)
T PLN02919 744 GISLSPDLKELYIADS---------------ESSSIRALDLK 770 (1057)
T ss_pred EEEEeCCCCEEEEEEC---------------CCCeEEEEECC
Confidence 9999999999999994 45677778774
No 25
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.42 E-value=0.00092 Score=66.99 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=57.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceee-cCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFR-KGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~-~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
++.|++|+|+++|||++...+.|++||+.... . .+..||.-. ...-.+. .+.+. +. ...... .|.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~----~~~~gg~~~~~~~l~~f-G~~dG---~g-~~~~l~----~P~ 807 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGG-S----RLLAGGDPTFSDNLFKF-GDHDG---VG-SEVLLQ----HPL 807 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-E----EEEEecccccCcccccc-cCCCC---ch-hhhhcc----CCc
Confidence 56799999999999999999999999976421 1 223333100 0000000 00000 00 001122 399
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
-+++++||+ ||||++ .+..|.++|. .+|.+
T Consensus 808 Gvavd~dG~-LYVADs---------------~N~rIrviD~--~tg~v 837 (1057)
T PLN02919 808 GVLCAKDGQ-IYVADS---------------YNHKIKKLDP--ATKRV 837 (1057)
T ss_pred eeeEeCCCc-EEEEEC---------------CCCEEEEEEC--CCCeE
Confidence 999999997 999994 5677887887 44544
No 26
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.15 E-value=0.0038 Score=50.47 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=46.2
Q ss_pred eeEEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 5 ITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
.-.|..||+|++|-++..+ .|+|..||+.+ .+.+.+..... .
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~~~~---------------------------------~ 146 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK---KKKISTFEHSD---------------------------------A 146 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCC---CEEeeccccCc---------------------------------E
Confidence 3469999999999998865 57899999874 55555443322 6
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
..++.|||||+|..+.+
T Consensus 147 t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEEcCCCCEEEEEEe
Confidence 78899999999999985
No 27
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0057 Score=54.13 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=46.7
Q ss_pred ceeEEEEecCCCEEEEEeCCC--CcEEEEeccCCCCCeEEEE-EEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQ-IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsdp~~pklvg~-v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
.+..|.|++|++++||.|..+ +.|..+|.. ..++... ...+. +
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~---~~~v~~~~~~~~~--------------------------~----- 253 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA---TGNVTATDLPVGS--------------------------G----- 253 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCC---CceEEEecccccc--------------------------C-----
Confidence 467899999999999999998 466655533 3444444 33322 1
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
+|++..++|+|+..||+|+
T Consensus 254 ~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 254 APRGVAVDPAGKAAYVANS 272 (381)
T ss_pred CCCceeECCCCCEEEEEec
Confidence 3999999999999999996
No 28
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0069 Score=53.22 Aligned_cols=47 Identities=32% Similarity=0.552 Sum_probs=33.6
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE 144 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~ 144 (167)
|+-+++|||||+||+|-+ ....+.+++.|+.+|. .-+..=+++|..+
T Consensus 165 ~NGla~SpDg~tly~aDT---------------~~~~i~r~~~d~~~g~-~~~~~~~~~~~~~ 211 (307)
T COG3386 165 PNGLAFSPDGKTLYVADT---------------PANRIHRYDLDPATGP-IGGRRGFVDFDEE 211 (307)
T ss_pred cCceEECCCCCEEEEEeC---------------CCCeEEEEecCcccCc-cCCcceEEEccCC
Confidence 999999999999999995 4567777888764443 3333445666543
No 29
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0051 Score=55.58 Aligned_cols=45 Identities=27% Similarity=0.619 Sum_probs=38.5
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCce
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 49 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~ 49 (167)
+.+++|+.+|-+ +.|++-|.. -++.+||++|++|++.|+..+-|.
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ss-GL~IvDIS~P~sP~~~~~lnt~gy 130 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSS-GLRIVDISTPDSPTLIGFLNTDGY 130 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCC-ceEEEeccCCCCcceeccccCCce
Confidence 567889998854 899999855 689999999999999999999663
No 30
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.007 Score=54.55 Aligned_cols=58 Identities=31% Similarity=0.494 Sum_probs=48.2
Q ss_pred EEecCCCEEEEEeC----CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 9 LISLDDRFLYFSNW----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 9 ~IS~DdRfLYVSnw----~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
.+|+||++||.+-- ..|-|-+||.. ++-.-+|.+++-|. ||..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~Gi-------------------------------GpHe 166 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGI-------------------------------GPHE 166 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCc-------------------------------Ccce
Confidence 47999999999864 34789999987 34556888888773 4999
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
+.|.+||+.|.|+|-
T Consensus 167 v~lm~DGrtlvvanG 181 (366)
T COG3490 167 VTLMADGRTLVVANG 181 (366)
T ss_pred eEEecCCcEEEEeCC
Confidence 999999999999994
No 31
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.34 E-value=0.013 Score=35.22 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=25.5
Q ss_pred cCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020 89 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG 147 (167)
Q Consensus 89 ~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g 147 (167)
|||++|||+| +.++.+..+|. .++.+ -.. ++-+++|.+
T Consensus 1 pd~~~lyv~~---------------~~~~~v~~id~--~~~~~--~~~--i~vg~~P~~ 38 (42)
T TIGR02276 1 PDGTKLYVTN---------------SGSNTVSVIDT--ATNKV--IAT--IPVGGYPFG 38 (42)
T ss_pred CCCCEEEEEe---------------CCCCEEEEEEC--CCCeE--EEE--EECCCCCce
Confidence 6899999999 34667777766 55543 222 555777665
No 32
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.01 E-value=0.072 Score=47.42 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=21.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNI 32 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDI 32 (167)
+....+.+||||++|+++....|.+..|.+
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 345578999999999988766666555543
No 33
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.064 Score=48.66 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=33.7
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
+++|| |++-||++|.. -+..-||++|.+|+|+|...+|+
T Consensus 176 ~v~IS--Gn~AYvA~~d~-GL~ivDVSnp~sPvli~~~n~g~ 214 (370)
T COG5276 176 DVAIS--GNYAYVAWRDG-GLTIVDVSNPHSPVLIGSYNTGP 214 (370)
T ss_pred eEEEe--cCeEEEEEeCC-CeEEEEccCCCCCeEEEEEecCC
Confidence 66776 78999999965 56789999999999999999984
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.96 E-value=0.15 Score=38.06 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=43.9
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
..++.+.+++++++|+++. ..+.|..||+.. .+....+.... +..
T Consensus 136 ~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~i 180 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSS-QDGTIKLWDLRT---GKCVATLTGHT-------------------------------GEV 180 (289)
T ss_pred CcEEEEEEcCcCCEEEEEc-CCCcEEEEEccc---cccceeEecCc-------------------------------ccc
Confidence 3578999999999988876 478999999863 33333332111 127
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
..+.++++|++|+++.
T Consensus 181 ~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 181 NSVAFSPDGEKLLSSS 196 (289)
T ss_pred ceEEECCCcCEEEEec
Confidence 7889999999988887
No 35
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.95 E-value=0.073 Score=47.65 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=23.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020 3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIE 33 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs 33 (167)
+...+..+||||++|+++.+..| +|+.||+.
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 44567899999999998766555 58888875
No 36
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.86 E-value=0.014 Score=42.86 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=28.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
++..|.+|+|+|+||||.-....|.+|.+.+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4678999999999999999999999999764
No 37
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=0.05 Score=51.27 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=46.9
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
|+|.++++.+|.|+|.||+|| +.|.|++||+..+ +..-+.--.|.+ +
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~---~~~~rf~D~G~v--------------------------~--- 389 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQN---SCLHRFVDDGSV--------------------------H--- 389 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCc---ceEEEEeecCcc--------------------------c---
Confidence 578999999999999999999 6789999998863 443333333422 2
Q ss_pred CCceEEEccCCCEEEEE
Q 031020 81 GPQMIQLSLDGKRLYVT 97 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVa 97 (167)
-..+++|++|.+|-+.
T Consensus 390 -gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 390 -GTSLCISLNGSYLATG 405 (514)
T ss_pred -eeeeeecCCCceEEec
Confidence 4568999999955443
No 38
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.74 E-value=0.12 Score=44.39 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=22.3
Q ss_pred eeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLH--GDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd 34 (167)
+....+||||++|+.+.+.. ..|.+||+..
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~ 223 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT 223 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 44567899999998877654 4688888764
No 39
>PRK01742 tolB translocation protein TolB; Provisional
Probab=95.71 E-value=0.093 Score=46.70 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=21.7
Q ss_pred ceeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLH--GDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd 34 (167)
.+.....||||+.|+.+.+.+ ..|+.+|+..
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t 237 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS 237 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC
Confidence 356788999999886554443 3688888753
No 40
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.69 E-value=0.044 Score=50.13 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=46.4
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC---CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP---KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp---~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
-+|++.+|.|||+| +++-+++.|+.|++.|= +|--+...|..+ +
T Consensus 88 ~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-----------------------------h--- 134 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKL-ATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-----------------------------H--- 134 (420)
T ss_pred ceeeeEEcCCCcee-EEEeCCceEEEEecchhhhhhhhHhhccccCC-----------------------------C---
Confidence 47999999999999 56668999999999982 222223333332 3
Q ss_pred CCceEEEccCCCEEEEEe
Q 031020 81 GPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaN 98 (167)
|-.+.++||-+-+.|+.
T Consensus 135 -pT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 135 -PTRVVFAPDCKSVVVSV 151 (420)
T ss_pred -ceEEEECCCcceEEEEE
Confidence 99999999999998887
No 41
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.65 E-value=0.095 Score=46.70 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=21.5
Q ss_pred eeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLH--GDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd 34 (167)
+....+||||+.|+++.... ..|+.||+..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~ 229 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT 229 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCC
Confidence 45678999999886554333 4589899864
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.52 E-value=0.17 Score=45.65 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=19.7
Q ss_pred eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs 33 (167)
.+...+|+|+++|+++....+ .|.++|+.
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 456789999999977765444 45555544
No 43
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.48 E-value=0.16 Score=45.83 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.6
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
....++||||++|+.+.
T Consensus 329 ~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCS 345 (428)
T ss_pred ccceeECCCCCEEEEEE
Confidence 34567999999998776
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.47 E-value=0.26 Score=36.76 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.8
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.-++.|.+|+++++|+++.. .|.|..|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~-~g~i~i~~~~~ 40 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG-DGTIKVWDLET 40 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec-CcEEEEEEeeC
Confidence 45789999999999988875 78999999875
No 45
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.36 E-value=0.2 Score=44.81 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.0
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
.....+||||++|+.++
T Consensus 333 ~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 333 NQDADVSSDGKFMVMVS 349 (429)
T ss_pred ccCEEECCCCCEEEEEE
Confidence 45678999999998876
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.28 E-value=0.14 Score=44.91 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=23.0
Q ss_pred CceeEEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsd 34 (167)
+......+||||++|+++....| +|.+||+..
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 34456789999999987665444 688888654
No 47
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.27 E-value=0.081 Score=52.74 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=47.2
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
.-++|+.+|+|||||-.++ +++.|+.|||-. ..++.-+-+-- -+
T Consensus 577 nritd~~FS~DgrWlisas-mD~tIr~wDlpt---~~lID~~~vd~--------------------------------~~ 620 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISAS-MDSTIRTWDLPT---GTLIDGLLVDS--------------------------------PC 620 (910)
T ss_pred cceeeeEeCCCCcEEEEee-cCCcEEEEeccC---cceeeeEecCC--------------------------------cc
Confidence 3489999999999997666 789999999753 45555444322 27
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
-.+.+||.|.+|-++..
T Consensus 621 ~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 621 TSLSFSPNGDFLATVHV 637 (910)
T ss_pred eeeEECCCCCEEEEEEe
Confidence 78999999999988874
No 48
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.23 E-value=0.18 Score=45.59 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=21.1
Q ss_pred CceeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020 3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIE 33 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs 33 (167)
+......+||||++|+++....| +|..+|+.
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 33456789999999987654444 47777764
No 49
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.15 E-value=0.19 Score=44.29 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=26.5
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
=.|++|||+|.||++-...+.|..|+...
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 35899999999999999999999999874
No 50
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.14 E-value=0.19 Score=44.67 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=23.4
Q ss_pred CCceeEEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHG--DIRQYNIED 34 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsd 34 (167)
++......+||||++|+++...+| +|..||+..
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 344457789999999987655444 588888653
No 51
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.07 E-value=0.3 Score=43.47 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=18.2
Q ss_pred eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs 33 (167)
.+...+|+||++|+++.-..| .|.++++.
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 356789999998765542233 45555543
No 52
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.99 E-value=0.21 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNI 32 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDI 32 (167)
++.......||||+.|+++....|....|.+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 3445678899999999876544555444443
No 53
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.68 E-value=0.16 Score=46.01 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCEEEEEeC----CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020 13 DDRFLYFSNW----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS 88 (167)
Q Consensus 13 DdRfLYVSnw----~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS 88 (167)
|-+.+||.-= +-+.|.+|| ..+.|+.|.|.+|= + |+ +.+|
T Consensus 1 ~~~rvyV~D~~~~~~~~rv~viD---~d~~k~lGmi~~g~-~-------------------------------~~-~~~s 44 (342)
T PF06433_consen 1 DAHRVYVQDPVFFHMTSRVYVID---ADSGKLLGMIDTGF-L-------------------------------GN-VALS 44 (342)
T ss_dssp -TTEEEEEE-GGGGSSEEEEEEE---TTTTEEEEEEEEES-S-------------------------------EE-EEE-
T ss_pred CCcEEEEECCccccccceEEEEE---CCCCcEEEEeeccc-C-------------------------------Cc-eeEC
Confidence 4577888654 224566666 55699999999864 1 55 6799
Q ss_pred cCCCEEEEEeCCCcccccccccccc--ccCcEEEEEEee
Q 031020 89 LDGKRLYVTNSLFSAWDCQFYPELK--EKGSHMLQIDVN 125 (167)
Q Consensus 89 ~DGkrLyVaNsl~s~wD~Qfyp~~~--~~g~~~~~~dvD 125 (167)
+|||.+|+++. ||..+. ++.+.+..+|..
T Consensus 45 pdgk~~y~a~T--------~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 45 PDGKTIYVAET--------FYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp TTSSEEEEEEE--------EEEETTEEEEEEEEEEEETT
T ss_pred CCCCEEEEEEE--------EEeccccccceeEEEEEecC
Confidence 99999999995 554443 345666666664
No 54
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.58 E-value=0.45 Score=41.34 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=48.2
Q ss_pred EEEEecCCCEEEEEeCC-----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 7 DFLISLDDRFLYFSNWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~-----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
.|++..|+.|+..+-.. +-.|+.|+.. .++...+.+-..+ .|..-..++++...|
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~~~----------------~~~~~~~~~~~~N~G 148 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD----GRVIRRFPVPAAF----------------LPDANGTSGRRNNRG 148 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC----CcccceEcccccc----------------ccccCccccccCCCC
Confidence 47776677655444443 1688888843 3334444332211 111111156677889
Q ss_pred CceEEEccCCCEEEEEeCCCcccccc
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQ 107 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Q 107 (167)
.+-|++++||++||++.+ ++|...
T Consensus 149 ~E~la~~~dG~~l~~~~E--~~l~~d 172 (326)
T PF13449_consen 149 FEGLAVSPDGRTLFAAME--SPLKQD 172 (326)
T ss_pred eEEEEECCCCCEEEEEEC--ccccCC
Confidence 999999999999999997 555443
No 55
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.47 E-value=0.25 Score=43.92 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCceeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLH--GDIRQYNIED 34 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd 34 (167)
++.+....+||||+.|+++.... .+|.++|+..
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 34456678999999987665433 4577777653
No 56
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.44 E-value=0.14 Score=37.91 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=36.5
Q ss_pred EEEEecCCCEEEEEeC-----------------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCC
Q 031020 7 DFLISLDDRFLYFSNW-----------------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD 69 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw-----------------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~ 69 (167)
|+.|+.|+..+|++.- .+|.+..||.+ +.+. +|-+.|..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~---t~~~--~vl~~~L~------------------- 57 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS---TKET--TVLLDGLY------------------- 57 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT---TTEE--EEEEEEES-------------------
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC---CCeE--EEehhCCC-------------------
Confidence 7889999889999864 45778888844 3332 13333321
Q ss_pred CccccCccCCCCCceEEEccCCCEEEEEe
Q 031020 70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaN 98 (167)
.|+-++||+||..|+||=
T Consensus 58 -----------fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 58 -----------FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -----------SEEEEEE-TTSSEEEEEE
T ss_pred -----------ccCeEEEcCCCCEEEEEe
Confidence 299999999999999986
No 57
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.40 E-value=0.55 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=18.3
Q ss_pred eeEEEEecCCCEEEEEe-CC-CCcEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSN-WL-HGDIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSn-w~-hg~I~qyDIs 33 (167)
.+....|+||++||++. +. ...|..+++.
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 34567899999876554 32 3356666654
No 58
>PRK01029 tolB translocation protein TolB; Provisional
Probab=94.24 E-value=0.33 Score=43.81 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=21.7
Q ss_pred eeEEEEecCCCEEEEEeCC--CCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWL--HGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsd 34 (167)
.+....||||++|+++... ...|.+||+..
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3567899999998876543 34688888653
No 59
>PTZ00420 coronin; Provisional
Probab=94.19 E-value=0.61 Score=44.52 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=44.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-++.|.++|+++.+.+|+-..+.|+.||+.. .+.+-++..++ ...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~~~~--------------------------------~V~ 171 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQINMPK--------------------------------KLS 171 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEecCC--------------------------------cEE
Confidence 3678999999999988877789999999875 22322232111 166
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
-+++|+||+.|.++.
T Consensus 172 SlswspdG~lLat~s 186 (568)
T PTZ00420 172 SLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCCEEEEEe
Confidence 788999999987765
No 60
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.11 E-value=0.81 Score=40.89 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCCceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020 1 MPGLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 79 (167)
Q Consensus 1 ~p~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~ 79 (167)
||.-.=+++++| +.+.+.++-|--.-..+||... .++...+.... ||++.
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~--------------------------gRHFy 53 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPP--------------------------GRHFY 53 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCC--------------------------CCEEe
Confidence 466667899999 6777777777666778888543 55555555432 23322
Q ss_pred CCCceEEEccCCCEEEEEeCCCccccccccccccccC-cEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeec
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKG-SHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY 156 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g-~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~ 156 (167)
| .=.+|+||++||+|=. .| +.| +.|-..|+. .++..-..| . -.| +=+|||++
T Consensus 54 G---Hg~fs~dG~~LytTEn--------d~----~~g~G~IgVyd~~---~~~~ri~E~----~--s~G-IGPHel~l 106 (305)
T PF07433_consen 54 G---HGVFSPDGRLLYTTEN--------DY----ETGRGVIGVYDAA---RGYRRIGEF----P--SHG-IGPHELLL 106 (305)
T ss_pred c---CEEEcCCCCEEEEecc--------cc----CCCcEEEEEEECc---CCcEEEeEe----c--CCC-cChhhEEE
Confidence 2 2479999999999863 22 233 355557773 455444444 1 222 56899975
No 61
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.75 E-value=0.66 Score=39.90 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs 33 (167)
.+.+.+|+||++|++++...+ .|..||+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 356789999999999887654 56666654
No 62
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.74 E-value=1.1 Score=39.44 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
.|+.+.+.++| |||++.
T Consensus 73 ~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CccceeEecCC--EEEeCC
Confidence 39999999999 999974
No 63
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.55 E-value=0.18 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=27.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.+..|+++++++.||.+.+..+.|.+++++.
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3567999999999999999999999999864
No 64
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.51 E-value=1.7 Score=35.10 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=42.1
Q ss_pred ceeEEEEecCCCEEEEEe-CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSn-w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
-+.++.-||+++.+.|.. -....|..||+. .+.+.++..+ . .
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~~~-----------------------------~----~ 103 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFGTQ-----------------------------P----R 103 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeecCC-----------------------------C----c
Confidence 388999999998877664 345689999984 3344333211 1 5
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
+.+..||+|++|.++.
T Consensus 104 n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAG 119 (194)
T ss_pred eEEEECCCCCEEEEEE
Confidence 6789999999999985
No 65
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.49 E-value=0.69 Score=41.88 Aligned_cols=28 Identities=14% Similarity=0.040 Sum_probs=20.1
Q ss_pred eEEEEecCCCE-EE-EEeC-CCCcEEEEecc
Q 031020 6 TDFLISLDDRF-LY-FSNW-LHGDIRQYNIE 33 (167)
Q Consensus 6 tdI~IS~DdRf-LY-VSnw-~hg~I~qyDIs 33 (167)
..-..||||+. +| +|+. ...+|.++|+.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~ 221 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLY 221 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECC
Confidence 34578999984 55 5776 36789988875
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.33 E-value=1.1 Score=40.54 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=20.8
Q ss_pred CceeEEEEecCCCEEEEEeCC--CCcEEEEecc
Q 031020 3 GLITDFLISLDDRFLYFSNWL--HGDIRQYNIE 33 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIs 33 (167)
+....-.+||||+.|.++--. ..+|..+|+.
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 444556789999988766433 3467777764
No 67
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.24 E-value=1 Score=40.07 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=19.9
Q ss_pred ceeEEEEecCCCEEEEEeCC--CCcEEEEecc
Q 031020 4 LITDFLISLDDRFLYFSNWL--HGDIRQYNIE 33 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIs 33 (167)
..+....||||++|+++.-. ...|.++|++
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 34567889999987665432 3467777754
No 68
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=92.97 E-value=0.93 Score=42.70 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=34.5
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
+||.= -||++||+.+ .+.|...|+.+++..+++++|...|
T Consensus 15 aDiVK-TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~ 54 (521)
T PF09826_consen 15 ADIVK-TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDG 54 (521)
T ss_pred CcEEE-ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecCC
Confidence 45544 5999999999 6999999998888999999999887
No 69
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.76 E-value=0.99 Score=40.91 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
+..++.+.+++++ -+.+|+-..+.|+.||+.. .+.+..+.... ++
T Consensus 246 ~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs-------------------------------~~ 290 (456)
T KOG0266|consen 246 STYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---GECVRKLKGHS-------------------------------DG 290 (456)
T ss_pred CCceEEEEecCCC-CEEEEecCCCcEEEEeccC---CeEEEeeeccC-------------------------------Cc
Confidence 4678999999999 7779999999999999875 55555554322 12
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
=.-+.+++||+.|.++.
T Consensus 291 is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSAS 307 (456)
T ss_pred eEEEEECCCCCEEEEcC
Confidence 44567899999888873
No 70
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=92.67 E-value=0.43 Score=45.86 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=34.5
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 45 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~ 45 (167)
+.|-++.+|+|||++-|+| ...+|+++||+ ..+++++.+-.
T Consensus 402 g~I~av~vs~dGK~~vvaN-dr~el~vidid-ngnv~~idkS~ 442 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVAN-DRFELWVIDID-NGNVRLIDKSE 442 (668)
T ss_pred cceEEEEEcCCCcEEEEEc-CceEEEEEEec-CCCeeEecccc
Confidence 4577899999999999999 57899999998 57888876644
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=1.1 Score=40.32 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=50.9
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
.++|.+|+|||+|-+|. .++-|...|-= ...+...+..-- .+++- |-+
T Consensus 190 w~~l~FS~dGK~iLlsT-~~s~~~~lDAf---~G~~~~tfs~~~------------------------~~~~~----~~~ 237 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLST-NASFIYLLDAF---DGTVKSTFSGYP------------------------NAGNL----PLS 237 (311)
T ss_pred eeeeEEcCCCCEEEEEe-CCCcEEEEEcc---CCcEeeeEeecc------------------------CCCCc----cee
Confidence 48999999999999998 46778877633 344433332100 01222 778
Q ss_pred EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020 85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 130 (167)
Q Consensus 85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~ 130 (167)
..++|||++++.+- +.+++...++ ++|.
T Consensus 238 a~ftPds~Fvl~gs----------------~dg~i~vw~~--~tg~ 265 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGS----------------DDGTIHVWNL--ETGK 265 (311)
T ss_pred EEECCCCcEEEEec----------------CCCcEEEEEc--CCCc
Confidence 89999999999876 3456666777 5554
No 72
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.55 E-value=1.2 Score=39.15 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=27.0
Q ss_pred CCCceEEEccCCCEEEEEeCCCcc-c-cccccc--cccccCcEEEEEEeeC
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSA-W-DCQFYP--ELKEKGSHMLQIDVNS 126 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~-w-D~Qfyp--~~~~~g~~~~~~dvD~ 126 (167)
..|+.+++.+|| +||++..-.+. + .++--+ +....++.++++|.|.
T Consensus 124 ~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 124 HSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred ccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 358899999999 59998764322 1 000000 1112356888888764
No 73
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.54 E-value=0.66 Score=41.41 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+.+.-+++|||.|+|- .|-..-.+.+|.+++- -|+.-++. || .+|-
T Consensus 216 ~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~--~kle~~l~-gh------------------------------~rWv 261 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF--FKLELVLT-GH------------------------------QRWV 261 (311)
T ss_pred ceEEEEEECCCCcEEE-eecCCceEEEEecCCc--eeeEEEee-cC------------------------------CceE
Confidence 4578899999999995 4556779999998862 33332222 22 1356
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
=+.++|-||++|+-+.|
T Consensus 262 Wdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASS 278 (311)
T ss_pred EeeeeccCccEEEecCC
Confidence 78899999999998875
No 74
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.93 E-value=1.8 Score=41.44 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCCCCceEEEccCCCEEEEEe
Q 031020 78 LRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 78 ~~g~P~~~~LS~DGkrLyVaN 98 (167)
+.+++..+++||||+||.+..
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE
Confidence 356799999999999999876
No 75
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.89 E-value=1.5 Score=40.46 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=49.0
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecC-CceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~-~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
+-+|.+++|+||..|--+.=-.--||+|.|.+ ..+.- .|++| -+|+
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~---G~kl~------eFRRG~~~~~------------------------ 220 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPE---GQKLY------EFRRGTYPVS------------------------ 220 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCC---ccEee------eeeCCceeeE------------------------
Confidence 34789999999999966554444679999976 22222 22222 1111
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 124 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv 124 (167)
---+++|+|+++|-++.+ .+..+++|++-
T Consensus 221 IySL~Fs~ds~~L~~sS~--------------TeTVHiFKL~~ 249 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN--------------TETVHIFKLEK 249 (391)
T ss_pred EEEEEECCCCCeEEEecC--------------CCeEEEEEecc
Confidence 234679999999998875 45667777654
No 76
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.82 E-value=1.3 Score=40.23 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-++.+.+++|+++|..++. .+.|++||+..
T Consensus 290 ~is~~~f~~d~~~l~s~s~-d~~i~vwd~~~ 319 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASY-DGTIRVWDLET 319 (456)
T ss_pred ceEEEEECCCCCEEEEcCC-CccEEEEECCC
Confidence 4788999999999999976 99999999775
No 77
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=91.75 E-value=0.28 Score=47.28 Aligned_cols=57 Identities=25% Similarity=0.428 Sum_probs=42.7
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
-+++||||-|..|.|| -.|.|++||+.+ ..++.+.. | ...|-.-+
T Consensus 513 yALa~spDakvcFscc-sdGnI~vwDLhn---q~~Vrqfq--G-----------------------------htDGascI 557 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCC-SDGNIAVWDLHN---QTLVRQFQ--G-----------------------------HTDGASCI 557 (705)
T ss_pred hhhhcCCccceeeeec-cCCcEEEEEccc---ceeeeccc--C-----------------------------CCCCceeE
Confidence 4688999999886555 789999999876 56676654 3 12346678
Q ss_pred EEccCCCEEEEE
Q 031020 86 QLSLDGKRLYVT 97 (167)
Q Consensus 86 ~LS~DGkrLyVa 97 (167)
.+|.||.+|+..
T Consensus 558 dis~dGtklWTG 569 (705)
T KOG0639|consen 558 DISKDGTKLWTG 569 (705)
T ss_pred EecCCCceeecC
Confidence 899999999854
No 78
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=0.65 Score=42.98 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=52.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
.|+.+.+|+|||||-+.. ..|+|+.|+..+-.....+-+...+ ---
T Consensus 283 siSsl~VS~dGkf~AlGT-~dGsVai~~~~~lq~~~~vk~aH~~---------------------------------~VT 328 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGT-MDGSVAIYDAKSLQRLQYVKEAHLG---------------------------------FVT 328 (398)
T ss_pred cceeEEEcCCCcEEEEec-cCCcEEEEEeceeeeeEeehhhhee---------------------------------eee
Confidence 478899999999999987 5999999997763222223333322 134
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCC
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE 127 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~ 127 (167)
.+++|||-+++--..+ .....++++-+|..
T Consensus 329 ~ltF~Pdsr~~~svSs--------------~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSS--------------DNEAAVTKLAVDKT 358 (398)
T ss_pred eEEEcCCcCccccccc--------------CCceeEEEEeeccc
Confidence 5788998888766443 44667888888743
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.51 E-value=0.57 Score=42.52 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=44.1
Q ss_pred ceeEEEEecCCCEEE-EEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLY-FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLY-VSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
-|++|.+||...+|. .+.| .|.||.|+|.+.+...-..+....| -+
T Consensus 29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~~--------------------------------Pv 75 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHDG--------------------------------PV 75 (347)
T ss_pred chheeEeccccCceEEeccc-CCceEEEEEecCCcccchhhhccCC--------------------------------Ce
Confidence 478999999766776 5555 7899999999742222222333333 36
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
=..+.|.||..+|.+..
T Consensus 76 L~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGC 92 (347)
T ss_pred EEEEEccCCceEEeecc
Confidence 67889999999998874
No 80
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.31 E-value=1.1 Score=44.17 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=53.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-++.+++||+|||| +|.--.|-|-.||+.. .+++.+.. | | .|---
T Consensus 579 ~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~---~~~v~~l~--~----------------------------H-t~ti~ 623 (707)
T KOG0263|consen 579 PVTALAFSPCGRYL-ASGDEDGLIKIWDLAN---GSLVKQLK--G----------------------------H-TGTIY 623 (707)
T ss_pred ceEEEEEcCCCceE-eecccCCcEEEEEcCC---Ccchhhhh--c----------------------------c-cCcee
Confidence 47899999999999 7887899999999875 33433222 1 0 12245
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 130 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~ 130 (167)
-+.+|+||..|.++-. +.++...|+...++.
T Consensus 624 SlsFS~dg~vLasgg~----------------DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGA----------------DNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEEecCCCEEEecCC----------------CCeEEEEEchhhccc
Confidence 6789999999999873 334444677655554
No 81
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.07 E-value=3.8 Score=35.40 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=27.8
Q ss_pred CceeEEEEecCC-----CEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDD-----RFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~Dd-----RfLYVSnw~hg~I~qyDIsd 34 (167)
.+..||+|.... .|.|++.-+.+.|.+||+.+
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence 467899998833 69999999999999999986
No 82
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=1.1 Score=41.58 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCCceeEEEEecC-CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020 1 MPGLITDFLISLD-DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 79 (167)
Q Consensus 1 ~p~l~tdI~IS~D-dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~ 79 (167)
+|-.++||.+-++ ..+-++.|-..+.+|.||+.-. -+.+.++.....
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~------------------------------ 248 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLEN------------------------------ 248 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCccc--CcceeEeccccC------------------------------
Confidence 4667888887554 4666777777789999997743 334555665441
Q ss_pred CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEec
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF 141 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf 141 (167)
.--.+.|.|+|..+|++|. -++|..||. ..| ++-.-|+=++
T Consensus 249 -~is~~~l~p~gn~Iy~gn~----------------~g~l~~FD~--r~~--kl~g~~~kg~ 289 (412)
T KOG3881|consen 249 -PISSTGLTPSGNFIYTGNT----------------KGQLAKFDL--RGG--KLLGCGLKGI 289 (412)
T ss_pred -cceeeeecCCCcEEEEecc----------------cchhheecc--cCc--eeeccccCCc
Confidence 1345679999999999994 457888888 444 3444444444
No 83
>PTZ00421 coronin; Provisional
Probab=89.81 E-value=3.3 Score=38.61 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=23.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+..|.++|++..+.+|+-..+.|+.||+..
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 578999999755555555688999999875
No 84
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=89.64 E-value=1 Score=42.20 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=42.7
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
--..+|||++.| ||.-++..+|.||+. .++|-.+ .|| ..-|-.-+
T Consensus 119 l~~~fsp~g~~l-~tGsGD~TvR~WD~~-TeTp~~t-------------------------------~Kg--H~~WVlcv 163 (480)
T KOG0271|consen 119 LSVQFSPTGSRL-VTGSGDTTVRLWDLD-TETPLFT-------------------------------CKG--HKNWVLCV 163 (480)
T ss_pred EEEEecCCCceE-EecCCCceEEeeccC-CCCccee-------------------------------ecC--CccEEEEE
Confidence 346789999998 888899999999987 3444332 111 12467888
Q ss_pred EEccCCCEEEEEe
Q 031020 86 QLSLDGKRLYVTN 98 (167)
Q Consensus 86 ~LS~DGkrLyVaN 98 (167)
+.||||++|--..
T Consensus 164 awsPDgk~iASG~ 176 (480)
T KOG0271|consen 164 AWSPDGKKIASGS 176 (480)
T ss_pred EECCCcchhhccc
Confidence 9999999987665
No 85
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.62 E-value=8.5 Score=33.04 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=50.9
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+++|...+|.+.||+-+=..+.|..++.+ .++..++++.|.- . |+.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l~g~~--------------------------D----~Eg 69 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD----GKVLRRIPLDGFG--------------------------D----YEG 69 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-S--------------------------S----EEE
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC----CCEEEEEeCCCCC--------------------------C----cee
Confidence 58999999999999888778888877742 6788999998821 3 888
Q ss_pred EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeee
Q 031020 85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAI 133 (167)
Q Consensus 85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l 133 (167)
++..-+|+++.+ . ++...++.++++..+..+..
T Consensus 70 I~y~g~~~~vl~-~---------------Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 70 ITYLGNGRYVLS-E---------------ERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEE-STTEEEEE-E---------------TTTTEEEEEEE----TT--E
T ss_pred EEEECCCEEEEE-E---------------cCCCcEEEEEEeccccccch
Confidence 888766654443 3 24557778888766665543
No 86
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.61 E-value=2 Score=38.35 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=27.6
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 46 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~ 46 (167)
+-.+.|.-+| +|||++|..+.|..+| |-+.|+.-++.+
T Consensus 214 PDGm~ID~eG-~L~Va~~ng~~V~~~d---p~tGK~L~eikl 251 (310)
T KOG4499|consen 214 PDGMTIDTEG-NLYVATFNGGTVQKVD---PTTGKILLEIKL 251 (310)
T ss_pred CCcceEccCC-cEEEEEecCcEEEEEC---CCCCcEEEEEEc
Confidence 3445565544 8999999999999998 555777655543
No 87
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=89.52 E-value=3.1 Score=40.23 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.7
Q ss_pred cCCCCCceEEEccCCCEEEEEeC
Q 031020 77 RLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 77 ~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
+.+|.+-.++.||||++|-++..
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred cccCCceEEEECCCCcEEEEecc
Confidence 45667999999999999999874
No 88
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=89.49 E-value=1.4 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.9
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEe
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYN 31 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyD 31 (167)
..+.+|.+++++++|..++ ..+.|++||
T Consensus 12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 4688999999999997777 578999987
No 89
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.22 E-value=1.2 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=17.7
Q ss_pred CceeEEEEecCCCEEEEEeCCC--CcEE
Q 031020 3 GLITDFLISLDDRFLYFSNWLH--GDIR 28 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~h--g~I~ 28 (167)
+.-....+|||||+||.+...+ |.-.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~d 36 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFD 36 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcC
Confidence 4456789999999887776655 5443
No 90
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.20 E-value=2.4 Score=40.04 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=36.0
Q ss_pred ecCCCEEEEEeCCCCcEEEEeccCCCC--CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020 11 SLDDRFLYFSNWLHGDIRQYNIEDPKN--PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS 88 (167)
Q Consensus 11 S~DdRfLYVSnw~hg~I~qyDIsdp~~--pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS 88 (167)
.|+..+=||.|=+..+|+.|--++... -+-+-+|+. +.-|-+..|+..-.-| .+.+-+-++.||
T Consensus 255 ~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~-------------~~v~~~~lp~ml~~~~-~~P~LitDI~iS 320 (461)
T PF05694_consen 255 DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA-------------KKVEGWILPEMLKPFG-AVPPLITDILIS 320 (461)
T ss_dssp STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE---------------EE--SS---GGGGGG--EE------EEE-
T ss_pred CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC-------------cccCcccccccccccc-cCCCceEeEEEc
Confidence 344667788888888888877543211 111112211 0112233343210001 123448889999
Q ss_pred cCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020 89 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 124 (167)
Q Consensus 89 ~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv 124 (167)
+|.|+|||+|= --+.+.|+||
T Consensus 321 lDDrfLYvs~W---------------~~GdvrqYDI 341 (461)
T PF05694_consen 321 LDDRFLYVSNW---------------LHGDVRQYDI 341 (461)
T ss_dssp TTS-EEEEEET---------------TTTEEEEEE-
T ss_pred cCCCEEEEEcc---------------cCCcEEEEec
Confidence 99999999992 2457888999
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=89.14 E-value=1.3 Score=42.79 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=47.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCC-CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~-~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
++.-...|+-|--+++|-..|++|.||+.++. +.+++-....||. + =-|.
T Consensus 271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~---------------------------R--v~~t 321 (641)
T KOG0772|consen 271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK---------------------------R--VPVT 321 (641)
T ss_pred eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc---------------------------c--cCce
Confidence 45556789999999999999999999999864 3334444444441 1 1288
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
..+.++||+++-.+.
T Consensus 322 sC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGC 336 (641)
T ss_pred eeecCCCcchhhhcc
Confidence 899999999976665
No 92
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.78 E-value=3.5 Score=40.44 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
||...+.|.+|+||+||..+.=--=.|.+||+.+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan 83 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN 83 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc
Confidence 7999999999999999999988888999999875
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.72 E-value=0.96 Score=42.72 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=55.4
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCC-ccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV-PEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~-~~~~g~~~~g~P~ 83 (167)
++-|..|||+||| ++|--...++.||++......+-.+- +|=+. .-.-|-|+. .. +.|+|+
T Consensus 272 V~yi~wSPDdryL-laCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~-----------~sc~W~pDg~~~-----V~Gs~d 333 (519)
T KOG0293|consen 272 VSYIMWSPDDRYL-LACGFDEVLSLWDVDTGDLRHLYPSG-LGFSV-----------SSCAWCPDGFRF-----VTGSPD 333 (519)
T ss_pred eEEEEECCCCCeE-EecCchHheeeccCCcchhhhhcccC-cCCCc-----------ceeEEccCCcee-----EecCCC
Confidence 5779999999999 66767788999998752221111111 11111 011133433 22 233342
Q ss_pred --eEEEccCCCEEEEEeCCCcccccccccccc-----ccCcEEEEEEeeCCCC
Q 031020 84 --MIQLSLDGKRLYVTNSLFSAWDCQFYPELK-----EKGSHMLQIDVNSEKG 129 (167)
Q Consensus 84 --~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~-----~~g~~~~~~dvD~~~G 129 (167)
..+.++||.- ..+|.-+.=|... .+|-.|+.+.+|++.-
T Consensus 334 r~i~~wdlDgn~-------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 334 RTIIMWDLDGNI-------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred CcEEEecCCcch-------hhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 3456667664 3456666544331 3777888888776543
No 94
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.72 E-value=2.5 Score=39.90 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=37.6
Q ss_pred cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020 26 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 26 ~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
.|..|||+||.+||.+.++.+|+.-. . . .+..-++.|.++++-.+|.+.-+
T Consensus 403 KisLFDVSD~~~P~e~~~~~iG~~~s-~--------------S--------~a~~dhkAfl~~~~~~ll~~Pv~ 453 (521)
T PF09826_consen 403 KISLFDVSDPANPKELDKEVIGDRGS-Y--------------S--------EALYDHKAFLFDKEKNLLAFPVS 453 (521)
T ss_pred EEEEEecCCCCCccEeEEEEcCCCCc-c--------------C--------ccccCceEEEEeCCCCEEEEEEE
Confidence 48899999999999999999965211 0 0 12223888999998888877665
No 95
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=88.66 E-value=1.5 Score=25.73 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=17.6
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
.|+.+++++++++||.+++
T Consensus 10 ~~~~la~d~~~~~lYw~D~ 28 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDW 28 (43)
T ss_pred CcCEEEEeecCCEEEEEeC
Confidence 3999999999999999994
No 96
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.64 E-value=1.3 Score=42.73 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=47.5
Q ss_pred EEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 7 DFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
++..||-|++|-++.++ .|+|-+||+.+ -|+++++..-+ ---
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~~---------------------------------tt~ 359 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAAN---------------------------------TTV 359 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccCC---------------------------------ceE
Confidence 57899999999999885 69999999876 77888777655 456
Q ss_pred EEEccCCCEEEEEe
Q 031020 85 IQLSLDGKRLYVTN 98 (167)
Q Consensus 85 ~~LS~DGkrLyVaN 98 (167)
+..||||+++++|+
T Consensus 360 ~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 360 FEWSPDGEYFLTAT 373 (566)
T ss_pred EEEcCCCcEEEEEe
Confidence 88999999999887
No 97
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=88.47 E-value=13 Score=36.08 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=53.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE---------e--CceeecC--CceeEeeCCCCCCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW---------V--GGLFRKG--SPVVAVTDDGQPYQSDV 70 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~---------~--GG~~~~~--~~v~v~~~~~~~~~p~~ 70 (167)
-||.+.+|+|+++||- +--.|-|--|++..-.+-+++|+.. . |..+..+ -.++|+.-++.-.--+.
T Consensus 322 ~ITaLtv~~d~~~i~S-gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYS-GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred ceeEEEEcCCCCEEEe-eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 3789999999999984 4468899999988644444432111 1 1122211 34444432222221221
Q ss_pred ccccCccCCCCCceEEEccCCCEEEEEe
Q 031020 71 PEVQGHRLRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 71 ~~~~g~~~~g~P~~~~LS~DGkrLyVaN 98 (167)
.. ++...|.-++.+.||-.+.|++
T Consensus 401 ~~----~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 401 VV----KLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred ee----ecCCCceeEEEcCCCCEEEEEe
Confidence 11 3444588999999998888888
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.82 E-value=1.5 Score=38.51 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=45.2
Q ss_pred CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCE
Q 031020 14 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR 93 (167)
Q Consensus 14 dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkr 93 (167)
+.+||...|..+.|++.| |.+.+.++.+.+.+..... ......+|+.-+ -+-++..+.+++
T Consensus 184 ~G~IyANVW~td~I~~Id---p~tG~V~~~iDls~L~~~~-------~~~~~~~~~~dV---------LNGIAyd~~~~~ 244 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRID---PETGKVVGWIDLSGLRPEV-------GRDKSRQPDDDV---------LNGIAYDPETDR 244 (264)
T ss_dssp TTEEEEEETTSSEEEEEE---TTT-BEEEEEE-HHHHHHH-------TSTTST--TTS----------EEEEEEETTTTE
T ss_pred cCEEEEEeCCCCeEEEEe---CCCCeEEEEEEhhHhhhcc-------cccccccccCCe---------eEeEeEeCCCCE
Confidence 458999999999999887 8889999999998854210 011111222222 566889999999
Q ss_pred EEEEe
Q 031020 94 LYVTN 98 (167)
Q Consensus 94 LyVaN 98 (167)
||||=
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 99
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=87.56 E-value=2 Score=24.87 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=22.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEE
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQY 30 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qy 30 (167)
.+.+|++++ +-.|||+.+....|++|
T Consensus 3 ~P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 478999995 45899999999999987
No 100
>PTZ00421 coronin; Provisional
Probab=87.49 E-value=19 Score=33.61 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=25.6
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
..+..|.+|+|++.|..++ .++.|+.||+..
T Consensus 169 ~~V~sla~spdG~lLatgs-~Dg~IrIwD~rs 199 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTS-KDKKLNIIDPRD 199 (493)
T ss_pred CceEEEEEECCCCEEEEec-CCCEEEEEECCC
Confidence 3578899999999887666 478999999764
No 101
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.30 E-value=4.2 Score=31.78 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=27.7
Q ss_pred EecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCce
Q 031020 10 ISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 49 (167)
Q Consensus 10 IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~ 49 (167)
..++++.||++. ..+.|..||+.+ .++.-+..+.+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~t---G~~~W~~~~~~~ 67 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKT---GKVLWRFDLPGP 67 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTT---SEEEEEEECSSC
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCC---CCEEEEeecccc
Confidence 556889999996 678999999654 778777777653
No 102
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.17 E-value=2.5 Score=39.14 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE---EEEeCceeecCC----ceeEeeCCCCCCCCCCcccc
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG---QIWVGGLFRKGS----PVVAVTDDGQPYQSDVPEVQ 74 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg---~v~~GG~~~~~~----~v~v~~~~~~~~~p~~~~~~ 74 (167)
|.-|.-|.+|+|..||-+|. ..+.|.+|.+++..+++... .....+.+.+.. |-.|.+. +-..+-..
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~-----~~~~R~FA 291 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV-----LDQSRKFA 291 (391)
T ss_pred eeEEEEEEECCCCCeEEEec-CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh-----hhhcccee
Confidence 44578899999999997765 57899999999754443321 111122222110 0011111 11112233
Q ss_pred CccCCCCC--ceEEEc--cCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCC-CeeecCceeEec
Q 031020 75 GHRLRGGP--QMIQLS--LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG-GMAINPNFFVDF 141 (167)
Q Consensus 75 g~~~~g~P--~~~~LS--~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G-~l~l~~~F~vDf 141 (167)
..++.+.+ +...|+ ..+.+++||.+ .+++..+.+++++| ...+-++...++
T Consensus 292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~----------------dG~~y~y~l~~~~gGec~lik~h~~~~ 347 (391)
T KOG2110|consen 292 TAKLPESGRKNICSLSSIQKIPRVLVASY----------------DGHLYSYRLPPKEGGECALIKRHFLDG 347 (391)
T ss_pred EEEccCCCccceEEeeccCCCCEEEEEEc----------------CCeEEEEEcCCCCCceeEEEEeeccCC
Confidence 44566667 566677 48899999994 56888899998754 455555544544
No 103
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.13 E-value=7.9 Score=35.29 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=34.3
Q ss_pred CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEE
Q 031020 15 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL 94 (167)
Q Consensus 15 RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrL 94 (167)
-.||++|++.|.|..+|.+. .+...+.++ .|-|+-+.+- |+.|
T Consensus 213 grLwvldsgtGev~~vD~~~-G~~e~Va~v----------------------------------pG~~rGL~f~--G~ll 255 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQA-GKFQPVAFL----------------------------------PGFTRGLAFA--GDFA 255 (335)
T ss_pred CeEEEEECCCCEEEEEcCCC-CcEEEEEEC----------------------------------CCCCccccee--CCEE
Confidence 36899999999999998442 223333333 2338888876 9999
Q ss_pred EEEeC
Q 031020 95 YVTNS 99 (167)
Q Consensus 95 yVaNs 99 (167)
+|.-|
T Consensus 256 vVgmS 260 (335)
T TIGR03032 256 FVGLS 260 (335)
T ss_pred EEEec
Confidence 99887
No 104
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.97 E-value=1.8 Score=39.75 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=50.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCC--cEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHG--DIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 79 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~ 79 (167)
.-.+-..|||||+|-+|-=..| +|.++|++....++|.. .+.+..++..+|.--| ++. .-.
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv-------------f~S--dr~ 303 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV-------------FTS--DRG 303 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEE-------------EEe--CCC
Confidence 3345678999999877654444 56677766544444321 1222222222211111 111 112
Q ss_pred CCCceEEEccCCCEE-EEEeCCCccccccccccccccCcEEEEEE
Q 031020 80 GGPQMIQLSLDGKRL-YVTNSLFSAWDCQFYPELKEKGSHMLQID 123 (167)
Q Consensus 80 g~P~~~~LS~DGkrL-yVaNsl~s~wD~Qfyp~~~~~g~~~~~~d 123 (167)
|.||-+..+++|+-. -+|.+....+ +|..--+|..|+..-
T Consensus 304 G~p~I~~~~~~g~~~~riT~~~~~~~----~p~~SpdG~~i~~~~ 344 (425)
T COG0823 304 GRPQIYLYDLEGSQVTRLTFSGGGNS----NPVWSPDGDKIVFES 344 (425)
T ss_pred CCcceEEECCCCCceeEeeccCCCCc----CccCCCCCCEEEEEe
Confidence 447777777777632 2233344444 444444566666544
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=86.60 E-value=3.3 Score=40.28 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=53.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
++-+..||..-|++|.. +.|.|-+|||+.|.+-.-+.++.+-- ++. - -|
T Consensus 421 vVcAvtIS~~trhVyTg--GkgcVKVWdis~pg~k~PvsqLdcl~-------------------rdn------y----iR 469 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTG--GKGCVKVWDISQPGNKSPVSQLDCLN-------------------RDN------Y----IR 469 (705)
T ss_pred EEEEEEecCCcceeEec--CCCeEEEeeccCCCCCCccccccccC-------------------ccc------c----ee
Confidence 56788999999999987 56899999999976555555554321 111 1 67
Q ss_pred eEEEccCCCEEEEEeC--CCcccccc
Q 031020 84 MIQLSLDGKRLYVTNS--LFSAWDCQ 107 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNs--l~s~wD~Q 107 (167)
..-|++|||.|.|.-+ -.|-||=.
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred eeEecCCCceEEeccccceeeeeecc
Confidence 7889999999999764 25667744
No 106
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.40 E-value=3.3 Score=30.37 Aligned_cols=19 Identities=42% Similarity=0.399 Sum_probs=17.5
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
.|+-+.+|+|+|+||||..
T Consensus 55 ~aNGI~~s~~~k~lyVa~~ 73 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASS 73 (86)
T ss_pred CCceEEEcCCCCEEEEEec
Confidence 3999999999999999994
No 107
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.38 E-value=20 Score=33.59 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=53.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+.+|.+.|||+ |||+-+..|.|+.++-.+ ...+.+..++ + . +.. .-++|+-.
T Consensus 32 Pw~maflPDG~-llVtER~~G~I~~v~~~~-~~~~~~~~l~--~---------------------v--~~~-~ge~GLlg 83 (454)
T TIGR03606 32 PWALLWGPDNQ-LWVTERATGKILRVNPET-GEVKVVFTLP--E---------------------I--VND-AQHNGLLG 83 (454)
T ss_pred ceEEEEcCCCe-EEEEEecCCEEEEEeCCC-CceeeeecCC--c---------------------e--ecc-CCCCceee
Confidence 56889999995 778988789999876322 2222221111 1 0 000 01567999
Q ss_pred EEEccCC------CEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 85 IQLSLDG------KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 85 ~~LS~DG------krLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
++|+||= ++|||+.+--.. +.+ + .....++++..+..+..+
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~-~~~-~----~~~~~I~R~~l~~~~~~l 130 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNG-DKE-L----PNHTKIVRYTYDKSTQTL 130 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCC-CCC-c----cCCcEEEEEEecCCCCcc
Confidence 9999874 699999851100 000 0 024578888776444433
No 108
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.18 E-value=1.6 Score=32.19 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.1
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 35 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp 35 (167)
.++..|++|+|+.||.||--....|.+|-|+.|
T Consensus 57 ~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 57 YFPNGVALSPDESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp SSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred CccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence 367899999999999999999999999988753
No 109
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.11 E-value=2.9 Score=36.30 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=13.7
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
.+..++||||++|....
T Consensus 45 ~~~~~~sP~g~~~~~v~ 61 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVR 61 (353)
T ss_dssp BSEEEE-SSSTEEEEEE
T ss_pred cccceeecCCCeeEEEe
Confidence 78899999999887765
No 110
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.07 E-value=16 Score=30.68 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.8
Q ss_pred CceEEEccCCCEEEEEeC
Q 031020 82 PQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNs 99 (167)
-..|++||||+|+-+..+
T Consensus 114 I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 114 ITALRVSPDGTRVAVVVE 131 (253)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 678999999999988773
No 111
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.80 E-value=4.7 Score=40.59 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=51.5
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
.-++++.++||||.|-|+. +.|.|.-||+.+ .+++|.|..--.+.++ + .+....-..---+|+. =
T Consensus 521 sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~---~~q~~~IdgrkD~~~g---R----~~~D~~ta~~sa~~K~----F 585 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVAT-LDGQITFFDIKE---AVQVGSIDGRKDLSGG---R----KETDRITAENSAKGKT----F 585 (893)
T ss_pred cceeEEEEcCCCCeEEEEE-ecceEEEEEhhh---ceeeccccchhhcccc---c----cccceeehhhcccCCc----e
Confidence 4568899999999999998 789999999775 5566555422111111 0 0000111111223444 5
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
..+.+|.||+.+..+-
T Consensus 586 tti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 586 TTICYSADGKCILAGG 601 (893)
T ss_pred EEEEEcCCCCEEEecC
Confidence 6788999999999876
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.60 E-value=6.1 Score=39.20 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=54.0
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE--EEEEeC-------c-----eeecC-Cc-eeEeeCC---
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT--GQIWVG-------G-----LFRKG-SP-VVAVTDD--- 62 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv--g~v~~G-------G-----~~~~~-~~-v~v~~~~--- 62 (167)
.-+||++..+|||++..|-+. .|..+.|++.+ .|++ .+|.+- + .+..+ +. |-|+...
T Consensus 451 ~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~---lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 451 RDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEG---LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred hhhheeEEeccCCceEEEEEe-ccEEEEEEccC---CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCce
Confidence 358999999999999988884 78889999775 4443 233322 1 11111 11 2222211
Q ss_pred ---CCCCCCCCccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020 63 ---GQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 63 ---~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
++...--..-.||-+-....---+|+.|||++..+..
T Consensus 527 RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 527 RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 1111111233455554444455569999999988873
No 113
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=4 Score=35.79 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=46.2
Q ss_pred EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEE
Q 031020 16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 95 (167)
Q Consensus 16 fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLy 95 (167)
.||..-|....|++.| |.+.|.++.|.+-|.. ++.-.. +.+ ..-++-++..+++.|+|
T Consensus 187 ~lyANVw~t~~I~rI~---p~sGrV~~widlS~L~-----------------~~~~~~-~~~-~nvlNGIA~~~~~~r~~ 244 (262)
T COG3823 187 ELYANVWQTTRIARID---PDSGRVVAWIDLSGLL-----------------KELNLD-KSN-DNVLNGIAHDPQQDRFL 244 (262)
T ss_pred EEEEeeeeecceEEEc---CCCCcEEEEEEccCCc-----------------hhcCcc-ccc-cccccceeecCcCCeEE
Confidence 7899999999999877 8889999999988743 111111 111 12388899999999999
Q ss_pred EEe
Q 031020 96 VTN 98 (167)
Q Consensus 96 VaN 98 (167)
+|-
T Consensus 245 iTG 247 (262)
T COG3823 245 ITG 247 (262)
T ss_pred Eec
Confidence 999
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.29 E-value=5.7 Score=36.02 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=27.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.|+.+.+|+...+|-||+| +|+++.||+..
T Consensus 15 ~IS~v~f~~~~~~LLvssW-DgslrlYdv~~ 44 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSW-DGSLRLYDVPA 44 (323)
T ss_pred ceeeEEEcCcCCcEEEEec-cCcEEEEeccc
Confidence 5899999999999999998 78999999874
No 115
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.80 E-value=18 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEe
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYN 31 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyD 31 (167)
+..|++.||+| |||+-+ .|.|+.++
T Consensus 4 P~~~a~~pdG~-l~v~e~-~G~i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLVAER-SGRIWVVD 28 (331)
T ss_dssp EEEEEEETTSC-EEEEET-TTEEEEEE
T ss_pred ceEEEEeCCCc-EEEEeC-CceEEEEe
Confidence 67899999985 578888 99999999
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=84.33 E-value=10 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=38.6
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcce
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALA 151 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~ 151 (167)
-..+.+|+|||.+.||| +.-.+..+|+|+.|-.| +-...-.+||.=-|++-.+|
T Consensus 404 I~av~vs~dGK~~vvaN----------------dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 404 IEAVKVSPDGKKVVVAN----------------DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred eEEEEEcCCCcEEEEEc----------------CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence 56788999999999999 34467779996555444 34456677887777764433
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.48 E-value=14 Score=28.81 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=25.1
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 47 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G 47 (167)
......++..+|+++. .+.|+.+|+. +.+++-+..++
T Consensus 115 ~~~~~~~~~~~~~~~~-~g~l~~~d~~---tG~~~w~~~~~ 151 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTS-SGKLVALDPK---TGKLLWKYPVG 151 (238)
T ss_dssp -SEEEEETTEEEEEET-CSEEEEEETT---TTEEEEEEESS
T ss_pred ccCceEecCEEEEEec-cCcEEEEecC---CCcEEEEeecC
Confidence 3444455888888886 7888988855 47777666653
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=83.42 E-value=13 Score=34.39 Aligned_cols=115 Identities=22% Similarity=0.266 Sum_probs=66.0
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCe--EEEEEE-eCc------------------eeecCCceeEe-----
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV--LTGQIW-VGG------------------LFRKGSPVVAV----- 59 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pk--lvg~v~-~GG------------------~~~~~~~v~v~----- 59 (167)
.+.++|||||||-+|.+-- +|-+|.+-=..... .+-+++ +-| ..+++|..+|-
T Consensus 232 ~~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 4678999999999998754 67778764221111 111110 000 12233333332
Q ss_pred --eC---CCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEe----CCCcccccccccccc-ccCcEEEEEEee
Q 031020 60 --TD---DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN----SLFSAWDCQFYPELK-EKGSHMLQIDVN 125 (167)
Q Consensus 60 --~~---~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN----sl~s~wD~Qfyp~~~-~~g~~~~~~dvD 125 (167)
.+ +-+.+-|.+.+-.|-. |=-+.|||.|+-|-++. .+|.+=|-.-||++- -.+..|--|..+
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~----p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSE----PVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYS 382 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCC----ceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence 11 2233344555555655 88999999999999875 345555666777763 125556556554
No 119
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=83.33 E-value=7.4 Score=33.40 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+++|.+.|.-..|||=.=-...|..+|-+ .+.++...+-+.+. .++. +-.+ |+-
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~--------------gl~~----~~~Q----pEG 226 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFH--------------GLSK----DIPQ----PEG 226 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGG--------------G-SS-------S----EEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCccc--------------Cccc----ccCC----ccE
Confidence 57889999988898877677788877722 44555555433110 0000 0013 999
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
+++++|| +||++|+
T Consensus 227 Ia~d~~G-~LYIvsE 240 (248)
T PF06977_consen 227 IAFDPDG-NLYIVSE 240 (248)
T ss_dssp EEE-TT---EEEEET
T ss_pred EEECCCC-CEEEEcC
Confidence 9999999 8999995
No 120
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.25 E-value=5.3 Score=40.21 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=43.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-++.+.+|+++..||-+.| +..|+.|||=+. .|++.+=. ++----
T Consensus 480 PVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s-----~~~vEtl~-----------------------------i~sdvl 524 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSW-DKTVRIWDIFSS-----SGTVETLE-----------------------------IRSDVL 524 (893)
T ss_pred cceeeEEccccCeEEeccc-cceEEEEEeecc-----CceeeeEe-----------------------------ecccee
Confidence 4677889999999988888 569999999762 22332211 001145
Q ss_pred eEEEccCCCEEEEEeC
Q 031020 84 MIQLSLDGKRLYVTNS 99 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNs 99 (167)
.++++|||+.|.||+.
T Consensus 525 ~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATL 540 (893)
T ss_pred EEEEcCCCCeEEEEEe
Confidence 6889999999999984
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.03 E-value=8 Score=38.42 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
+-++|-|++.|-|..-|+|.-+++.||.|.|.| -+.+..-.+-. -
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---~~Vv~W~Dl~~--------------------------------l 453 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD---KKVVDWNDLRD--------------------------------L 453 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCc---CeeEeehhhhh--------------------------------h
Confidence 347899999997777789999999999999998 33443222222 2
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
--.++++|||+...|..
T Consensus 454 ITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGT 470 (712)
T ss_pred heeEEeccCCceEEEEE
Confidence 45678999999999987
No 122
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=9.2 Score=35.60 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=21.7
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 35 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp 35 (167)
+-|+.+|||++|| +|--. +..++|++.+-
T Consensus 189 V~DL~FS~dgk~l-asig~-d~~~VW~~~~g 217 (398)
T KOG0771|consen 189 VKDLDFSPDGKFL-ASIGA-DSARVWSVNTG 217 (398)
T ss_pred cccceeCCCCcEE-EEecC-CceEEEEeccC
Confidence 5689999999998 34333 38889998763
No 123
>PTZ00420 coronin; Provisional
Probab=81.73 E-value=19 Score=34.63 Aligned_cols=32 Identities=19% Similarity=0.034 Sum_probs=24.9
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+-+.+|.+||++..+.+|+-..+.|++||+..
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Confidence 45789999998544556666789999999975
No 124
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=81.43 E-value=6.6 Score=35.33 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=53.1
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+--|.|+|||||+-+-. -...+..||+++--..+... ++...-|.
T Consensus 192 CicI~f~p~GryfA~Gs-ADAlvSLWD~~ELiC~R~is----------------------------------RldwpVRT 236 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGS-ADALVSLWDVDELICERCIS----------------------------------RLDWPVRT 236 (313)
T ss_pred eEEEEECCCCceEeecc-ccceeeccChhHhhhheeec----------------------------------cccCceEE
Confidence 45689999999996654 45677889988622222221 34445789
Q ss_pred EEEccCCCEEEEEeCCCccccccccccc--cccCcEEEEEEeeC
Q 031020 85 IQLSLDGKRLYVTNSLFSAWDCQFYPEL--KEKGSHMLQIDVNS 126 (167)
Q Consensus 85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~--~~~g~~~~~~dvD~ 126 (167)
+.+|-|||.|--+.+ ..|=+. ++.|+.+-+|-.+.
T Consensus 237 lSFS~dg~~lASaSE-------Dh~IDIA~vetGd~~~eI~~~~ 273 (313)
T KOG1407|consen 237 LSFSHDGRMLASASE-------DHFIDIAEVETGDRVWEIPCEG 273 (313)
T ss_pred EEeccCcceeeccCc-------cceEEeEecccCCeEEEeeccC
Confidence 999999999987775 333343 35566666666543
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.74 E-value=4.3 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=26.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-+.|++|+.||++||..+ -+-.|+.|+..+
T Consensus 356 ~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVT-VDKKIRLYNREA 385 (519)
T ss_pred eeEEEEEcCCCcEEEEEe-cccceeeechhh
Confidence 468999999999999998 677899888765
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=80.70 E-value=8.7 Score=35.49 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=43.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
++.-+.+|+-|-+|-|-| ..|.|..||... .+ ++++.. +.+ +. -+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc-~nG~vvI~D~~T-~~---iar~ls-aH~-------------------------~p----i~ 69 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGC-ANGRVVIYDFDT-FR---IARMLS-AHV-------------------------RP----IT 69 (405)
T ss_pred ccceEEeccCcceeeeec-cCCcEEEEEccc-cc---hhhhhh-ccc-------------------------cc----ee
Confidence 356789999999999988 689999999874 32 334332 211 11 46
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
-++-|+|||.|.-+.
T Consensus 70 sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSS 84 (405)
T ss_pred EEEecCCCCEeeeec
Confidence 788999999998776
No 127
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=80.43 E-value=15 Score=33.73 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=34.0
Q ss_pred EEecCCCEEEEEeCCCC--cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020 9 LISLDDRFLYFSNWLHG--DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ 86 (167)
Q Consensus 9 ~IS~DdRfLYVSnw~hg--~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~ 86 (167)
.+|||||++|...=..| .|.+++..- . -+.++...+. +...-.
T Consensus 288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g-~---~~~riT~~~~-------------------------------~~~~p~ 332 (425)
T COG0823 288 SWSPDGSKIVFTSDRGGRPQIYLYDLEG-S---QVTRLTFSGG-------------------------------GNSNPV 332 (425)
T ss_pred cCCCCCCEEEEEeCCCCCcceEEECCCC-C---ceeEeeccCC-------------------------------CCcCcc
Confidence 47999999876654444 555555431 2 2233333331 133456
Q ss_pred EccCCCEEEEEeC
Q 031020 87 LSLDGKRLYVTNS 99 (167)
Q Consensus 87 LS~DGkrLyVaNs 99 (167)
.||||+++...++
T Consensus 333 ~SpdG~~i~~~~~ 345 (425)
T COG0823 333 WSPDGDKIVFESS 345 (425)
T ss_pred CCCCCCEEEEEec
Confidence 8999999999994
No 128
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=80.26 E-value=15 Score=31.83 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=39.5
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+.+.+...||||++|.... .++|...+.... ..-++...|. . .|. ...|+= |--+++-+..
T Consensus 43 ~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~----~~~~lT~dg~---~---~i~-----nG~~dw--vyeEEv~~~~ 103 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR--DNNLYLRDLATG----QETQLTTDGE---P---GIY-----NGVPDW--VYEEEVFDRR 103 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE--TTEEEEESSTTS----EEEESES--T---T---TEE-----ESB--H--HHHHHTSSSS
T ss_pred cccccceeecCCCeeEEEe--cCceEEEECCCC----CeEEeccccc---e---eEE-----cCccce--eccccccccc
Confidence 3467889999999986654 368888776532 2223333330 0 000 011110 0001122336
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
..+-.||||++|...-
T Consensus 104 ~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLR 119 (353)
T ss_dssp BSEEE-TTSSEEEEEE
T ss_pred cceEECCCCCEEEEEE
Confidence 8899999999987754
No 129
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=79.59 E-value=19 Score=32.38 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=56.0
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE------EEEE----eCceeec--CCceeEeeCCCC--CCC--C
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT------GQIW----VGGLFRK--GSPVVAVTDDGQ--PYQ--S 68 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv------g~v~----~GG~~~~--~~~v~v~~~~~~--~~~--p 68 (167)
++.+-+.-|||++|-+. .+|.++.||+..+..+++- -.|- -+..|.. .++|+|-.-.+- .++ |
T Consensus 86 VtaVgF~~dgrWMyTgs-eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGS-EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eEEEEEeecCeEEEecC-CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 67889999999999776 6899999999876544431 1111 0122222 277877654332 222 3
Q ss_pred CCccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020 69 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 69 ~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
|.. .. -|-+++-+||+.|..+|.
T Consensus 165 e~~----~~----i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 165 EDD----TS----IQSLTVMPDGSMLAAANN 187 (311)
T ss_pred CCC----cc----eeeEEEcCCCcEEEEecC
Confidence 332 22 678899999999999884
No 130
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.42 E-value=14 Score=31.92 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=43.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-...+.++++| -||++...+++|..|+...+-+++-...|.. |++ .--+|.
T Consensus 187 ~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--------------d~~--------------~l~~pd 237 (287)
T PF03022_consen 187 QSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--------------DPR--------------TLQWPD 237 (287)
T ss_dssp SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE---------------CC---------------GSSEE
T ss_pred CCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEE--------------cCc--------------eeeccc
Confidence 45678888855 8999999999999999776554444433332 111 112599
Q ss_pred eEEEcc--CCCEEEEEeCC
Q 031020 84 MIQLSL--DGKRLYVTNSL 100 (167)
Q Consensus 84 ~~~LS~--DGkrLyVaNsl 100 (167)
.|.+.. +|.....+|+|
T Consensus 238 ~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp EEEE-T--TS-EEEEE-S-
T ss_pred eeeeccccCceEEEEECcc
Confidence 999999 88877777754
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=79.35 E-value=12 Score=34.61 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=26.5
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 36 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~ 36 (167)
++-+.-|+|||+|.-|.+ ..+|.+||+.++.
T Consensus 68 i~sl~WS~dgr~LltsS~-D~si~lwDl~~gs 98 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGS 98 (405)
T ss_pred eeEEEecCCCCEeeeecC-CceeEEEeccCCC
Confidence 577899999999987776 6799999999844
No 132
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.67 E-value=9.8 Score=38.37 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=44.1
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+..+.+|||||||-||- +.+.|.+|=+++ |.-.+.+=|.- - . -.-
T Consensus 511 vL~v~~Spdgk~LaVsL-LdnTVkVyflDt-----lKFflsLYGHk--L-----------------------P----V~s 555 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSL-LDNTVKVYFLDT-----LKFFLSLYGHK--L-----------------------P----VLS 555 (888)
T ss_pred EEEEEEcCCCcEEEEEe-ccCeEEEEEecc-----eeeeeeecccc--c-----------------------c----eeE
Confidence 45789999999999997 789999999887 44456666621 0 1 467
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
|++|+|++-+. |.|
T Consensus 556 mDIS~DSkliv-TgS 569 (888)
T KOG0306|consen 556 MDISPDSKLIV-TGS 569 (888)
T ss_pred EeccCCcCeEE-ecc
Confidence 99999999554 443
No 133
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.67 E-value=16 Score=31.84 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=21.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCc----EEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGD----IRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~----I~qyDIsd 34 (167)
+..+.+|||+++|-++--..|+ |+++|+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t 159 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET 159 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC
Confidence 4578999999999877544444 77777654
No 134
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.64 E-value=11 Score=35.24 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEecC------CCEEEEEeC---------CCCcEEEEeccC
Q 031020 6 TDFLISLD------DRFLYFSNW---------LHGDIRQYNIED 34 (167)
Q Consensus 6 tdI~IS~D------dRfLYVSnw---------~hg~I~qyDIsd 34 (167)
-+|+++|| .++|||+.- .+..|++|..++
T Consensus 82 lglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~ 125 (454)
T TIGR03606 82 LGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDK 125 (454)
T ss_pred eeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecC
Confidence 47899977 479999851 245788887753
No 135
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=78.64 E-value=8.9 Score=34.67 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=23.5
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
|+-.+.++=+++| +++--.|+|++||+..
T Consensus 150 it~a~Wg~l~~~i-i~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 150 ITSALWGPLGETI-IAGHEDGSISIYDART 178 (327)
T ss_pred eeeeeecccCCEE-EEecCCCcEEEEEccc
Confidence 4566778888888 6777889999999875
No 136
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=78.25 E-value=6.9 Score=36.63 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=44.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
.+|-+.-.+||-.|--+..+..+|..||++....-.|. +.|+ ||-.
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~gl-------------------------------gg~s 242 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGL-------------------------------GGFS 242 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCC-------------------------------Ccee
Confidence 35667777888888888888888888886642222222 2221 3467
Q ss_pred eEEEccCCCEEEEEe--CCCccc
Q 031020 84 MIQLSLDGKRLYVTN--SLFSAW 104 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN--sl~s~w 104 (167)
|+-.||||..||+|. ..|+-|
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred eEEEcCCCCEEEEecccceeeee
Confidence 899999999999986 344444
No 137
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.08 E-value=12 Score=33.52 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCC
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG 159 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pgg 159 (167)
+=|+-++.+.|-|..|+..| .+-.+..+|-|-.+|. ..|++-..|..+ ..+.|--+|.|
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDs---------------ln~~V~a~dyd~~tG~-~snr~~i~dlrk-----~~~~e~~~PDG 216 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDS---------------LNYEVDAYDYDCPTGD-LSNRKVIFDLRK-----SQPFESLEPDG 216 (310)
T ss_pred cCCccccccccCcEEEEEcc---------------CceEEeeeecCCCccc-ccCcceeEEecc-----CCCcCCCCCCc
Confidence 34888999999999999995 4556666777667776 457888888877 23444445555
Q ss_pred Cc
Q 031020 160 DC 161 (167)
Q Consensus 160 dc 161 (167)
-|
T Consensus 217 m~ 218 (310)
T KOG4499|consen 217 MT 218 (310)
T ss_pred ce
Confidence 44
No 138
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=77.78 E-value=7.2 Score=37.90 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=57.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-||-|.+|.||++| +|--..+++.+||+.+...|-.+ ++|= . .++ ---
T Consensus 366 ~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~---~tgL-~-------------------t~~--------~~t 413 (641)
T KOG0772|consen 366 DITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNV---RTGL-P-------------------TPF--------PGT 413 (641)
T ss_pred ceeEEEeccccchh-hhccCCCceeeeeccccccchhh---hcCC-C-------------------ccC--------CCC
Confidence 47899999999999 56556899999999886555433 3321 1 000 023
Q ss_pred eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEecc
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE 142 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~ 142 (167)
+..+|||-+.++...|+-. ... .+.++-+|. |+++.-+-|||.
T Consensus 414 dc~FSPd~kli~TGtS~~~---------~~~-~g~L~f~d~------~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 414 DCCFSPDDKLILTGTSAPN---------GMT-AGTLFFFDR------MTLDTVYKIDIS 456 (641)
T ss_pred ccccCCCceEEEecccccC---------CCC-CceEEEEec------cceeeEEEecCC
Confidence 5679999998888776211 111 124444443 566666666664
No 139
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.21 E-value=3.4 Score=37.56 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=36.5
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE-EEEEeCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT-GQIWVGGL 49 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv-g~v~~GG~ 49 (167)
||.|.+|++|.|| .||-+.+.|++||+. |.+|..- =+|+.|+.
T Consensus 219 It~lsls~~gs~l-lsnsMd~tvrvwd~r-p~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 219 ITGLSLSRYGSFL-LSNSMDNTVRVWDVR-PFAPSQRCVKIFQGHI 262 (338)
T ss_pred eeeEEeccCCCcc-ccccccceEEEEEec-ccCCCCceEEEeecch
Confidence 7899999999999 899999999999998 6777653 46787774
No 140
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.71 E-value=7.7 Score=36.23 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=45.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
.++.+.+-|++.|+|+.| -++.+.-||+.. .|+.|. ..+| +.|+++
T Consensus 249 ~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~---~kl~g~-~~kg-----------------------------~tGsir 294 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGN-TKGQLAKFDLRG---GKLLGC-GLKG-----------------------------ITGSIR 294 (412)
T ss_pred cceeeeecCCCcEEEEec-ccchhheecccC---ceeecc-ccCC-----------------------------ccCCcc
Confidence 367889999999999999 589999999764 555443 2223 667899
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
.++..|.++.|--+-
T Consensus 295 sih~hp~~~~las~G 309 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCG 309 (412)
T ss_pred eEEEcCCCceEEeec
Confidence 999988877665443
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.21 E-value=11 Score=36.07 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCCCceEEEccCCCEEEEEeC
Q 031020 78 LRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 78 ~~g~P~~~~LS~DGkrLyVaNs 99 (167)
++|--..+.+|-|||+||++++
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcC
Confidence 4444788999999999999994
No 142
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.14 E-value=21 Score=32.85 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=46.0
Q ss_pred CCCEEEEEeCCCCcEEEEeccCCCCCe----EEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020 13 DDRFLYFSNWLHGDIRQYNIEDPKNPV----LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS 88 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsdp~~pk----lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS 88 (167)
++++--+.+.-+|.+.||.+++..+.+ ++-+..+++ .|+-+...
T Consensus 169 ~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--------------------------------Q~EGCVVD 216 (381)
T PF02333_consen 169 TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--------------------------------QPEGCVVD 216 (381)
T ss_dssp T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---------------------------------EEEEEEE
T ss_pred CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------------------------------cceEEEEe
Confidence 566544555567999999999766654 444444433 27888888
Q ss_pred cCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020 89 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 130 (167)
Q Consensus 89 ~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~ 130 (167)
..-.+||++=+ +.-|-+++.||+.+.
T Consensus 217 De~g~LYvgEE----------------~~GIW~y~Aep~~~~ 242 (381)
T PF02333_consen 217 DETGRLYVGEE----------------DVGIWRYDAEPEGGN 242 (381)
T ss_dssp TTTTEEEEEET----------------TTEEEEEESSCCC-S
T ss_pred cccCCEEEecC----------------ccEEEEEecCCCCCC
Confidence 88899999873 557777888877653
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=75.11 E-value=28 Score=32.95 Aligned_cols=90 Identities=17% Similarity=0.345 Sum_probs=57.9
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
+|-++.-+..+-||..|--+|+ +-.||+|| |...+++..- .+. .|.+
T Consensus 172 hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~d---pr~~~~v~e~-~~h-------------------------eG~k--- 218 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCK-DKKVRVID---PRRGTVVSEG-VAH-------------------------EGAK--- 218 (472)
T ss_pred CCCeEEEEEeccCCceeeeecc-cceeEEEc---CCCCcEeeec-ccc-------------------------cCCC---
Confidence 4788899999999999988887 55899888 6656665432 111 1334
Q ss_pred CCceEEEccCCCEEEEE------eCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 81 GPQMIQLSLDGKRLYVT------NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVa------Nsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
|+-..+-.+|+ ++.| +..++-||... ++.. +..-++|+-+|-|
T Consensus 219 -~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n----l~eP--~~~~elDtSnGvl 267 (472)
T KOG0303|consen 219 -PARAIFLASGK-IFTTGFSRMSERQIALWDPNN----LEEP--IALQELDTSNGVL 267 (472)
T ss_pred -cceeEEeccCc-eeeeccccccccceeccCccc----ccCc--ceeEEeccCCceE
Confidence 55555556777 4433 34455677654 3333 4556777778876
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.93 E-value=13 Score=36.23 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=49.1
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
|-+++|.+||-.--|+||--.+-.|..||+.. .+++.++---- . -
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s---~~s~~~l~y~~----------------------------P----l 253 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRS---QASTDRLTYSH----------------------------P----L 253 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeeccc---ccccceeeecC----------------------------C----c
Confidence 34689999999999999999999999999884 44454443221 1 3
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
-.++++++|.+|.+.||
T Consensus 254 stvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNS 270 (673)
T ss_pred ceeeecCCceEEEeecC
Confidence 56889999999999995
No 145
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=74.90 E-value=5.4 Score=36.44 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=28.6
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCC
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN 37 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~ 37 (167)
-||+++.+++-+|+|+-..|+||.||+.+-+|
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 48999999999999999999999999887443
No 146
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=74.87 E-value=28 Score=32.63 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=71.1
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc---------eeecC-CceeEeeCC------CCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG---------LFRKG-SPVVAVTDD------GQPY 66 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG---------~~~~~-~~v~v~~~~------~~~~ 66 (167)
.++.+..++.||.++ +|+-.+|.|.+|+--..+. ..+...+| .+.+. .+..||... .+..
T Consensus 349 Syvn~a~ft~dG~~i-isaSsDgtvkvW~~KtteC---~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHI-ISASSDGTVKVWHGKTTEC---LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccccceEEcCCCCeE-EEecCCccEEEecCcchhh---hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 467888999999988 6788899999998643221 11111111 11122 233344221 1223
Q ss_pred CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCC
Q 031020 67 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD 146 (167)
Q Consensus 67 ~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~ 146 (167)
|--..+-.|++-.|.=-...|||.|.++|..-+ ...|+-|.+ .+|+|+ .++.=-.+.+-
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigE----------------D~vlYCF~~--~sG~LE---~tl~VhEkdvI 483 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGE----------------DGVLYCFSV--LSGKLE---RTLPVHEKDVI 483 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEcc----------------CcEEEEEEe--ecCcee---eeeeccccccc
Confidence 333344456553333344569999999999882 457888988 889884 22222344455
Q ss_pred CCccee
Q 031020 147 GPALAH 152 (167)
Q Consensus 147 gp~~~h 152 (167)
| ++|
T Consensus 484 G--l~H 487 (508)
T KOG0275|consen 484 G--LTH 487 (508)
T ss_pred c--ccc
Confidence 5 554
No 147
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.16 E-value=4.4 Score=37.62 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=26.6
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+.+++|||-|||| +||-..+++++||+.+
T Consensus 337 Vr~~af~p~Gkyi-~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 337 VRGVAFSPGGKYI-LSCADDKTLRVWDLKN 365 (406)
T ss_pred eeeeEEcCCCeEE-EEEecCCcEEEEEecc
Confidence 5689999999999 7999999999999886
No 148
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.10 E-value=30 Score=32.77 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=45.6
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
|-+.+|.+-+|+|++.|-.|.+ ++.+-++|... -...+....-|-.+ +-.
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssR-Ddtl~viDlRt---~eI~~~~sA~g~k~-----------------------asD--- 389 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSR-DDTLKVIDLRT---KEIRQTFSAEGFKC-----------------------ASD--- 389 (459)
T ss_pred cCcceeeEeeccCCeEEeeecC-CCceeeeeccc---ccEEEEeecccccc-----------------------ccc---
Confidence 3467899999999999988754 67888888663 33333333333211 112
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
=.-.++||||.++....+
T Consensus 390 -wtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred -cceeEECCCCceeeeccC
Confidence 445789999998887763
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=73.90 E-value=22 Score=32.96 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=61.0
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE------EEEEEeCceeecC--Cc--------------eeEeeCCCC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL------TGQIWVGGLFRKG--SP--------------VVAVTDDGQ 64 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl------vg~v~~GG~~~~~--~~--------------v~v~~~~~~ 64 (167)
-+.+|+||..||.- -...|++||++-|..--- .|+...-|.++-. .| +-+-.+
T Consensus 163 sL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~--- 237 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND--- 237 (406)
T ss_pred eEEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec---
Confidence 36789999999875 367999999976643211 1111111211100 11 111111
Q ss_pred CCCCCCccccCccCCCCCceEEEccCCCEEEEEeC---CCcccccccccccc-------ccCcEEEEEEeeCC
Q 031020 65 PYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS---LFSAWDCQFYPELK-------EKGSHMLQIDVNSE 127 (167)
Q Consensus 65 ~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs---l~s~wD~Qfyp~~~-------~~g~~~~~~dvD~~ 127 (167)
+--.+..+-|. -.||--.++.-+||.+||+.-. -.--||-..|-+++ .+..+=+.||.|+.
T Consensus 238 -~~~~pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~ 308 (406)
T KOG2919|consen 238 -DGRRPLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK 308 (406)
T ss_pred -CCCCceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC
Confidence 11123333332 2688999999999999998752 11236655555443 22334445666643
No 150
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=73.88 E-value=14 Score=32.28 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=24.0
Q ss_pred ceeEEEEecCCCE------EEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRF------LYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRf------LYVSnw~hg~I~qyDIsd 34 (167)
.++.|.+-...+| +++++|..+.|..+++.+
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~ 290 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDE 290 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeec
Confidence 4677888777666 889999999999999864
No 151
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=73.03 E-value=30 Score=33.53 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
+|+-++-++.||+...|-+.| -+|+|..||..- .++-.+.. . + .
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~----~~t~~~ka-~-~--------------------------~--- 301 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGC-EDGSIILYDTTR----GVTLLAKA-E-F--------------------------I--- 301 (545)
T ss_pred cCCcceEEecCcccceEEEEe-cCCeEEEEEcCC----Ceeeeeee-c-c--------------------------c---
Confidence 466778889999999999999 689999999753 12222221 1 1 1
Q ss_pred CCceEEEccCCCEEEEEeC
Q 031020 81 GPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaNs 99 (167)
|..++-.|+|-.+.|+|+
T Consensus 302 -P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 302 -PTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred -ceEEEEcCCCcEEEEEcC
Confidence 999999999999999994
No 152
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=72.88 E-value=7.3 Score=35.97 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=49.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
++..|++|+|+.|+-+|--.-..|.+|=|..+... ..++++.| +.|-|.
T Consensus 220 F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g--t~EvFa~~-----------------------------LPG~PD 268 (376)
T KOG1520|consen 220 FPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG--TSEVFAEG-----------------------------LPGYPD 268 (376)
T ss_pred ccccccCCCCCCEEEEEeeccceeeeeEecCCccC--chhhHhhc-----------------------------CCCCCc
Confidence 56789999999999999888888999998864321 12444433 678899
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
++..+.+|.+...-+
T Consensus 269 NIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 269 NIRRDSTGHFWVALH 283 (376)
T ss_pred ceeECCCCCEEEEEe
Confidence 999999998766654
No 153
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=71.66 E-value=28 Score=32.47 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=39.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
++.+..-+ ..+||.+| ..|.|++||.. ...+.... +|= ..+-..
T Consensus 330 V~~l~w~~-t~~l~t~c-~~g~v~~wDaR---tG~l~~~y-~GH------------------------------~~~Il~ 373 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTAC-ANGKVRQWDAR---TGQLKFTY-TGH------------------------------QMGILD 373 (399)
T ss_pred eEEEEEcC-cchheeec-cCceEEeeecc---ccceEEEE-ecC------------------------------chheeE
Confidence 56666666 78999999 68999999954 34454332 221 223789
Q ss_pred EEEccCCCEEEEEe
Q 031020 85 IQLSLDGKRLYVTN 98 (167)
Q Consensus 85 ~~LS~DGkrLyVaN 98 (167)
|+||+|++++.-+.
T Consensus 374 f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 374 FALSPQKRLVVTVS 387 (399)
T ss_pred EEEcCCCcEEEEec
Confidence 99999887665444
No 154
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=70.97 E-value=25 Score=30.13 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCce
Q 031020 13 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 49 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~ 49 (167)
++..||+.+. .|.|..||..+ .++.=+..+++.
T Consensus 64 ~~~~v~v~~~-~g~v~a~d~~t---G~~~W~~~~~~~ 96 (377)
T TIGR03300 64 AGGKVYAADA-DGTVVALDAET---GKRLWRVDLDER 96 (377)
T ss_pred ECCEEEEECC-CCeEEEEEccC---CcEeeeecCCCC
Confidence 4668898885 46788888543 555555555553
No 155
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=51 Score=29.93 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=45.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
.+..|.+||=+ -.++|.-.++.|+.||+.- ++-.|.+.+.+ +-
T Consensus 102 ~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~---~~cqg~l~~~~---------------------------------~p 144 (311)
T KOG1446|consen 102 RVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV---KKCQGLLNLSG---------------------------------RP 144 (311)
T ss_pred eEEEEEecCCC-CeEEecccCCeEEeeEecC---CCCceEEecCC---------------------------------Cc
Confidence 46788888866 4556777899999999874 45566677766 67
Q ss_pred eEEEccCCCEEEEEe
Q 031020 84 MIQLSLDGKRLYVTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN 98 (167)
-.+++|.|=.+-++|
T Consensus 145 i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN 159 (311)
T ss_pred ceeECCCCcEEEEec
Confidence 788999998888888
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=70.72 E-value=16 Score=36.24 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=27.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+.|+-|.+|+||.|+-|++ ..|.|.+|++..
T Consensus 476 ~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAIS-TRGQIFVYNLET 506 (691)
T ss_pred CcceeEEEcCCCCEEEEEe-ccceEEEEEccc
Confidence 4578899999999999999 889999999875
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=69.55 E-value=26 Score=35.88 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=26.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-+..+.++|.+.||-||. ..|.|.+||+++
T Consensus 140 pVl~l~~~p~~~fLAvss-~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSS-CDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeEcCCCCEEEEEe-cCceEEEEEccc
Confidence 467789999999998877 789999999987
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=68.19 E-value=13 Score=37.19 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=42.4
Q ss_pred eeEEEEecCCCEEEEEeCC----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020 5 ITDFLISLDDRFLYFSNWL----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 80 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g 80 (167)
+.++.+||++.+|--||+- |..|+.|..+. =+.++.+.-- ++ +
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~~H-sL------T----------------------- 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---WLQVQELEGH-SL------T----------------------- 574 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccc---hhhhheeccc-ce------E-----------------------
Confidence 5789999999999999984 67899998664 2223322211 11 1
Q ss_pred CCceEEEccCCCEEEEEe
Q 031020 81 GPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaN 98 (167)
-..+.+|||||+|..+.
T Consensus 575 -VT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 575 -VTRLAFSPDGRYLLSVS 591 (764)
T ss_pred -EEEEEECCCCcEEEEee
Confidence 45688999999999876
No 159
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=67.88 E-value=62 Score=29.62 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 38 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~p 38 (167)
++.|--|.++|||.+| +|.--+-.|..|.+.+..+-
T Consensus 47 ~geI~~~~F~P~gs~~-aSgG~Dr~I~LWnv~gdceN 82 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCF-ASGGSDRAIVLWNVYGDCEN 82 (338)
T ss_pred cceEEEEEECCCCCeE-eecCCcceEEEEeccccccc
Confidence 4667789999988776 56555668999998764433
No 160
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=67.78 E-value=32 Score=32.60 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=56.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+++-.+.+|||+|++- |.--+.+|+.||-.+ .|...... |.+ +.-
T Consensus 368 ~lVn~V~fSPd~r~IA-SaSFDkSVkLW~g~t---Gk~lasfR--GHv-----------------------------~~V 412 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIA-SASFDKSVKLWDGRT---GKFLASFR--GHV-----------------------------AAV 412 (480)
T ss_pred hheeeEEECCCccEEE-EeecccceeeeeCCC---cchhhhhh--hcc-----------------------------cee
Confidence 4667899999999995 444578999999554 44332211 211 112
Q ss_pred ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee------ecCceeEeccCCCCC
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA------INPNFFVDFEAEPDG 147 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~------l~~~F~vDf~~~p~g 147 (167)
=.++.|.| .||.|+.| +..++-.+||- +-+|+ -|+-|-||+ -|+|
T Consensus 413 YqvawsaD-sRLlVS~S---------------kDsTLKvw~V~--tkKl~~DLpGh~DEVf~vDw--spDG 463 (480)
T KOG0271|consen 413 YQVAWSAD-SRLLVSGS---------------KDSTLKVWDVR--TKKLKQDLPGHADEVFAVDW--SPDG 463 (480)
T ss_pred EEEEeccC-ccEEEEcC---------------CCceEEEEEee--eeeecccCCCCCceEEEEEe--cCCC
Confidence 23456666 46778885 46688888984 44443 357788998 3555
No 161
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=66.84 E-value=5 Score=39.05 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=29.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE--EEEEeCcee
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT--GQIWVGGLF 50 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv--g~v~~GG~~ 50 (167)
.|-.+.+|+|||+|-+-. -+|-+|+||... .+|. .+-.-||.+
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt---~eLlg~mkSYFGGLL 336 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDGFLRIFDFDT---QELLGVMKSYFGGLL 336 (636)
T ss_pred cccceeEcCCCceEEEEe-cCceEEEeeccH---HHHHHHHHhhccceE
Confidence 355789999999996544 478999999764 3443 344556644
No 162
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=66.79 E-value=14 Score=34.14 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=58.5
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC-----CCCCeEEEEEEeCceeecCCceeEeeCCCCCCCC-CCccccCc
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED-----PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS-DVPEVQGH 76 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-----p~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p-~~~~~~g~ 76 (167)
+...-++++|||+-.|.+.-...+|+.|+-.+ -.+| ..|...+-|.+..++.|+|+++-.+...| ..+.-+|.
T Consensus 28 gs~pvvLV~PDGsk~ya~~~~p~~V~W~~~~~~DlItI~~P-mpGpWq~~G~v~p~sri~viS~L~L~v~plP~~l~~gE 106 (374)
T TIGR03503 28 GSPPVILVRPDGSKYYAWRVHPEDVKWYDESTMDIISIKNP-MPGPWQAIGKITPGNRVKVISNLRLEVEPLPSPLFQGE 106 (374)
T ss_pred CCCCeEEECCCCcEEeccCCCCCCceEEecCCceEEEeCCC-CCCCcEEeeeeCCCCeEEEEeccEEEEecCCccccCCC
Confidence 34566899999999998763455677665332 1222 24666777777788899999998887777 34666666
Q ss_pred cCCCCCceEEEccCCCEE
Q 031020 77 RLRGGPQMIQLSLDGKRL 94 (167)
Q Consensus 77 ~~~g~P~~~~LS~DGkrL 94 (167)
++ .=...|.-||+.|
T Consensus 107 ~l---k~ta~L~~d~~~i 121 (374)
T TIGR03503 107 TL---KVTAKLLNDGEPL 121 (374)
T ss_pred eE---EEEEEEecCCEEe
Confidence 41 1223367788766
No 163
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=65.95 E-value=18 Score=34.27 Aligned_cols=107 Identities=23% Similarity=0.384 Sum_probs=67.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
-+++++++|+||||--+|..+ +=|.||+.. ...-|. ..|. -+ +--
T Consensus 263 RVs~VafHPsG~~L~TasfD~-tWRlWD~~t-k~ElL~----QEGH-----------------------s~------~v~ 307 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDS-TWRLWDLET-KSELLL----QEGH-----------------------SK------GVF 307 (459)
T ss_pred hheeeeecCCCceeeeccccc-chhhccccc-chhhHh----hccc-----------------------cc------ccc
Confidence 468899999999999888866 679999874 111111 1120 01 144
Q ss_pred eEEEccCCCEEEEEe---CCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCC
Q 031020 84 MIQLSLDGKRLYVTN---SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD 160 (167)
Q Consensus 84 ~~~LS~DGkrLyVaN---sl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggd 160 (167)
.+++.+||.. .+|- +|-.-||-- .|..++-++- -+.+=|-|+| .|+| -+|-=-++|
T Consensus 308 ~iaf~~DGSL-~~tGGlD~~~RvWDlR-------tgr~im~L~g-------H~k~I~~V~f--sPNG----y~lATgs~D 366 (459)
T KOG0272|consen 308 SIAFQPDGSL-AATGGLDSLGRVWDLR-------TGRCIMFLAG-------HIKEILSVAF--SPNG----YHLATGSSD 366 (459)
T ss_pred eeEecCCCce-eeccCccchhheeecc-------cCcEEEEecc-------cccceeeEeE--CCCc----eEEeecCCC
Confidence 6677778863 3333 223346544 3555554433 3556678888 6788 456668999
Q ss_pred cCcccc
Q 031020 161 CTSDIW 166 (167)
Q Consensus 161 ctsd~~ 166 (167)
||--||
T Consensus 367 nt~kVW 372 (459)
T KOG0272|consen 367 NTCKVW 372 (459)
T ss_pred CcEEEe
Confidence 999888
No 164
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=65.55 E-value=65 Score=29.65 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=40.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCC-cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHG-DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg-~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
-||-++|+.||..|--+ --.| -||.||..+ ..+.....=|- . +.--
T Consensus 183 ~Iacv~Ln~~Gt~vATa-StkGTLIRIFdt~~---g~~l~E~RRG~----------------------------d-~A~i 229 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATA-STKGTLIRIFDTED---GTLLQELRRGV----------------------------D-RADI 229 (346)
T ss_pred ceeEEEEcCCccEEEEe-ccCcEEEEEEEcCC---CcEeeeeecCC----------------------------c-hheE
Confidence 36778899999777444 4444 478888554 55554433222 1 1115
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
.-|++|+|+.+|-|+.
T Consensus 230 y~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSS 245 (346)
T ss_pred EEEEeCCCccEEEEEc
Confidence 5688999999999988
No 165
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=65.04 E-value=29 Score=31.73 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=44.6
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
++-+++|.-||.||.. -....+.+||.-. .+.+|.+. |. +..---
T Consensus 276 itSv~FS~SGRlLfag-y~d~~c~vWDtlk---~e~vg~L~--GH-----------------------------eNRvSc 320 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAG-YDDFTCNVWDTLK---GERVGVLA--GH-----------------------------ENRVSC 320 (343)
T ss_pred ceeEEEcccccEEEee-ecCCceeEeeccc---cceEEEee--cc-----------------------------CCeeEE
Confidence 5789999999999875 6788899999543 55666554 31 111556
Q ss_pred EEEccCCCEEEEEeCCCcccccc
Q 031020 85 IQLSLDGKRLYVTNSLFSAWDCQ 107 (167)
Q Consensus 85 ~~LS~DGkrLyVaNsl~s~wD~Q 107 (167)
+.+||||--|--+ +||.+
T Consensus 321 l~~s~DG~av~Tg-----SWDs~ 338 (343)
T KOG0286|consen 321 LGVSPDGMAVATG-----SWDST 338 (343)
T ss_pred EEECCCCcEEEec-----chhHh
Confidence 7899999766443 48876
No 166
>PLN00181 protein SPA1-RELATED; Provisional
Probab=65.00 E-value=78 Score=30.61 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.7
Q ss_pred ceeEEEEec-CCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISL-DDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-+..|.+++ |+.+| +|+-..+.|+.||+..
T Consensus 577 ~V~~l~~~p~~~~~L-~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 577 RVWSIDYSSADPTLL-ASGSDDGSVKLWSINQ 607 (793)
T ss_pred CEEEEEEcCCCCCEE-EEEcCCCEEEEEECCC
Confidence 477899997 55555 5666789999999874
No 167
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=64.20 E-value=17 Score=18.11 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=17.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEe
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYN 31 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyD 31 (167)
.+..+.++++++++..++ .++.|+.|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 356777777777664444 466777664
No 168
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=64.06 E-value=6.9 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=15.7
Q ss_pred eEEEccCCCEEEEEeCCCcccc
Q 031020 84 MIQLSLDGKRLYVTNSLFSAWD 105 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~wD 105 (167)
.+..|.||+++||-+..++-|=
T Consensus 31 i~H~S~D~~W~fV~t~~~~GWV 52 (54)
T PF12913_consen 31 ILHTSRDGAWAFVQTPFYSGWV 52 (54)
T ss_dssp EEEE-TTSSEEEEE-SS-EEEE
T ss_pred EEEECCCCCEEEEecCCeeEee
Confidence 4458999999999999888873
No 169
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.61 E-value=62 Score=30.77 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=43.0
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
-||..+ -...+|.-....||-|||.. ++.+-.|++||.+ --+
T Consensus 306 nDI~~~---~~~~~SgH~DkkvRfwD~Rs---~~~~~sv~~gg~v--------------------------------tSl 347 (459)
T KOG0288|consen 306 NDIVCS---ISDVISGHFDKKVRFWDIRS---ADKTRSVPLGGRV--------------------------------TSL 347 (459)
T ss_pred cceEec---ceeeeecccccceEEEeccC---CceeeEeecCcce--------------------------------eeE
Confidence 466666 35677877788999999875 6677889999954 357
Q ss_pred EEccCCCEEEEEe
Q 031020 86 QLSLDGKRLYVTN 98 (167)
Q Consensus 86 ~LS~DGkrLyVaN 98 (167)
.+|.+|.+|..+.
T Consensus 348 ~ls~~g~~lLsss 360 (459)
T KOG0288|consen 348 DLSMDGLELLSSS 360 (459)
T ss_pred eeccCCeEEeeec
Confidence 8999999999885
No 170
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=62.47 E-value=5.3 Score=37.73 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.2
Q ss_pred eeEEEEecCCCEEEEEeCC
Q 031020 5 ITDFLISLDDRFLYFSNWL 23 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~ 23 (167)
+.=|.+|+|||.|||+|-+
T Consensus 391 PQMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 391 PQMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred ceeEEeccCCcEEEEEchh
Confidence 4458899999999999964
No 171
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=62.37 E-value=1e+02 Score=28.87 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.++.+.+|.||.|| ++.-+.|.|.+|+.+.
T Consensus 108 SVt~~~FshdgtlL-ATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLL-ATGDMSGKVLVFKVST 137 (399)
T ss_pred ceEEEEEccCceEE-EecCCCccEEEEEccc
Confidence 36889999999888 7777999999999885
No 172
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=61.52 E-value=32 Score=32.38 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc-CCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR-LRG 80 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~-~~g 80 (167)
++.+..-.-||+||||.+++- ++=+.|.++=+..+-+--. .++.- .+..+- ..++.-.-.|++ +-|
T Consensus 280 sgrvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~--~~~~k----~~llia-----DL~e~ti~ag~~l~cg 346 (445)
T KOG2139|consen 280 SGRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLR--PQSIK----RVLLIA-----DLQEVTICAGQRLCCG 346 (445)
T ss_pred CCceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccC--cccce----eeeeec-----cchhhhhhcCcccccC
Confidence 345556677999999999995 4556666654332222111 12210 111111 123333333434 556
Q ss_pred CCceEEEccCCCEEEEEe
Q 031020 81 GPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaN 98 (167)
.+|-|+..|.|.||-|+-
T Consensus 347 eaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 347 EAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ccceeeECCCCCEEEEEE
Confidence 799999999999999975
No 173
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.77 E-value=45 Score=28.56 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=16.3
Q ss_pred CCCEEEEEeCCCCcEEEEeccC
Q 031020 13 DDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsd 34 (167)
++.++|++++ .|.+..||..+
T Consensus 240 ~~~~vy~~~~-~g~l~a~d~~t 260 (377)
T TIGR03300 240 DGGQVYAVSY-QGRVAALDLRS 260 (377)
T ss_pred ECCEEEEEEc-CCEEEEEECCC
Confidence 4679999987 56788888863
No 174
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=59.56 E-value=41 Score=33.84 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=38.9
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ 86 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~ 86 (167)
.++.|++|++||..| .+.|-+-|++. ..-+ ++.|- .++++ . --.+.
T Consensus 24 ~~~~s~nG~~L~t~~--~d~Vi~idv~t-~~~~----l~s~~----------~ed~d-------------~----ita~~ 69 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC--GDRVIIIDVAT-GSIA----LPSGS----------NEDED-------------E----ITALA 69 (775)
T ss_pred ceeECCCCCEEEEec--CceEEEEEccC-Ccee----cccCC----------ccchh-------------h----hheee
Confidence 489999999999998 35688888774 1111 34332 01111 1 45688
Q ss_pred EccCCCEEEEEe
Q 031020 87 LSLDGKRLYVTN 98 (167)
Q Consensus 87 LS~DGkrLyVaN 98 (167)
|++|+++||.+-
T Consensus 70 l~~d~~~L~~a~ 81 (775)
T KOG0319|consen 70 LTPDEEVLVTAS 81 (775)
T ss_pred ecCCccEEEEee
Confidence 999999999875
No 175
>PLN00181 protein SPA1-RELATED; Provisional
Probab=59.45 E-value=98 Score=29.94 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=42.4
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+..+.+|+++++|...+ ..+.|.+|+...+ .+...-.....+.+. ... . ......-..
T Consensus 711 i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~-~~~~s~~~~~~~~~~-----------------~~~-~--~~~~~~V~~ 768 (793)
T PLN00181 711 KNFVGLSVSDGYIATGS-ETNEVFVYHKAFP-MPVLSYKFKTIDPVS-----------------GLE-V--DDASQFISS 768 (793)
T ss_pred eeEEEEcCCCCEEEEEe-CCCEEEEEECCCC-CceEEEecccCCccc-----------------ccc-c--CCCCcEEEE
Confidence 45688999999886666 5789999996542 222222111111000 000 0 001112467
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
++++++|..|+++++
T Consensus 769 v~ws~~~~~lva~~~ 783 (793)
T PLN00181 769 VCWRGQSSTLVAANS 783 (793)
T ss_pred EEEcCCCCeEEEecC
Confidence 889999999999994
No 176
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=59.40 E-value=30 Score=32.06 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=41.1
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE---EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG---QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg---~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
...|+++||| +||||--..++.. ... .+-++.| ++.-.|.+.. +.+-+....+--|.+ .
T Consensus 179 g~~l~f~pDG-~Lyvs~G~~~~~~--~aq--~~~~~~Gk~~r~~~a~~~~~----------d~p~~~~~i~s~G~R---N 240 (399)
T COG2133 179 GGRLVFGPDG-KLYVTTGSNGDPA--LAQ--DNVSLAGKVLRIDRAGIIPA----------DNPFPNSEIWSYGHR---N 240 (399)
T ss_pred cccEEECCCC-cEEEEeCCCCCcc--ccc--CccccccceeeeccCccccc----------CCCCCCcceEEeccC---C
Confidence 3579999999 9999985444433 111 1222333 2222222211 111111222333433 4
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
||-|++.|-...||++.
T Consensus 241 ~qGl~w~P~tg~Lw~~e 257 (399)
T COG2133 241 PQGLAWHPVTGALWTTE 257 (399)
T ss_pred ccceeecCCCCcEEEEe
Confidence 88999999988888876
No 177
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=59.05 E-value=1.1e+02 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=22.6
Q ss_pred eeEEEEecCCCEEEEEeCCCC---cEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHG---DIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg---~I~qyDIsd 34 (167)
..++.+|.|+|||+++...+. +|...|..+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 678999999999998766554 477777765
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=59.00 E-value=22 Score=35.85 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=31.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
-|-+|+-|||||.+---| -+|.|++|.-.....|..-|.-++|+
T Consensus 722 qIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~pv~Eg~gpvgt 765 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQPVYEGKGPVGT 765 (1012)
T ss_pred ceeEEEECCCCcceeeee-cCceEEEeCCCCCCCccccCCCCccC
Confidence 366899999999987666 58899999855444555555555554
No 179
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.89 E-value=74 Score=30.55 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+|-+.+.-|++.|+ |.-+++-|.+||+++ -|++..+..-| .-=.
T Consensus 241 VTcL~l~s~~~rLl-S~sLD~~VKVfd~t~---~Kvv~s~~~~~--------------------------------pvLs 284 (487)
T KOG0310|consen 241 VTCLRLASDSTRLL-SGSLDRHVKVFDTTN---YKVVHSWKYPG--------------------------------PVLS 284 (487)
T ss_pred EEEEEeecCCceEe-ecccccceEEEEccc---eEEEEeeeccc--------------------------------ceee
Confidence 56778888998885 566999999999886 67776665444 2346
Q ss_pred EEEccCCCEEEEEeC
Q 031020 85 IQLSLDGKRLYVTNS 99 (167)
Q Consensus 85 ~~LS~DGkrLyVaNs 99 (167)
+.+|||++.+++.-+
T Consensus 285 iavs~dd~t~viGms 299 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMS 299 (487)
T ss_pred EEecCCCceEEEecc
Confidence 899999999999873
No 180
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=56.17 E-value=17 Score=34.82 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=34.9
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC
Q 031020 1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 47 (167)
Q Consensus 1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G 47 (167)
++|+...+.+||||+|| +|.=..|.+..||-. .-|++..+..+
T Consensus 431 vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk---t~kl~~~lkah 473 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK---TTKLVSKLKAH 473 (503)
T ss_pred ccCceeeEEEcCCCCeE-EeecCCccEEEeech---hhhhhhccccC
Confidence 47889999999999999 677789999999954 35677666655
No 181
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=56.02 E-value=86 Score=28.41 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.7
Q ss_pred CCceEEEccCCCEEEEEe
Q 031020 81 GPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaN 98 (167)
+--.+.-||||++..|.|
T Consensus 108 eni~i~wsp~g~~~~~~~ 125 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGN 125 (313)
T ss_pred cceEEEEcCCCCEEEEec
Confidence 356788999999999999
No 182
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=55.59 E-value=63 Score=30.97 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=40.1
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 84 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~ 84 (167)
+|.+.++||| .|++..-..+.|..||+..+. -+...+ | ..|--..
T Consensus 350 ~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~---~~a~Fp--g-----------------------------ht~~vk~ 394 (506)
T KOG0289|consen 350 YTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT---NVAKFP--G-----------------------------HTGPVKA 394 (506)
T ss_pred eEEeeEcCCc-eEEeccCCCceEEEEEcCCcc---ccccCC--C-----------------------------CCCceeE
Confidence 4567778887 566777777888888877532 222211 2 1233678
Q ss_pred EEEccCCCEEEEEe
Q 031020 85 IQLSLDGKRLYVTN 98 (167)
Q Consensus 85 ~~LS~DGkrLyVaN 98 (167)
+++|-.|-+|.++.
T Consensus 395 i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 395 ISFSENGYWLATAA 408 (506)
T ss_pred EEeccCceEEEEEe
Confidence 99999999999998
No 183
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=54.94 E-value=72 Score=30.51 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
|-.+.+++++|-+|.+|+-+. .|.|+|.++..
T Consensus 217 p~si~av~lDpae~~~yiGt~-~G~I~~~~~~~ 248 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTE-EGKIFQNLLFK 248 (476)
T ss_pred CCcceeEEEcccccEEEecCC-cceEEeeehhc
Confidence 677899999999999999985 78999999876
No 184
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=53.68 E-value=78 Score=28.77 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
|.-++.|+|.+.++-+|+|.-..-.|.+|+++.
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~ 47 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTS 47 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEecc
Confidence 456899999999999999999999999999885
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=53.65 E-value=1.3e+02 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=25.1
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPK 36 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~ 36 (167)
-|+.-|++-..+-|+--.|.|+||||..|.
T Consensus 152 ria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 152 RIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred heecCCCCCceEEEecCCcceeeecccCCc
Confidence 366778887888899999999999999754
No 186
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.66 E-value=1e+02 Score=26.97 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=13.2
Q ss_pred CCCEEEEEeCCCCcEEEEeccC
Q 031020 13 DDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.+..||++++ .|.+..+|+.+
T Consensus 255 ~~~~vy~~~~-~g~l~ald~~t 275 (394)
T PRK11138 255 VGGVVYALAY-NGNLVALDLRS 275 (394)
T ss_pred ECCEEEEEEc-CCeEEEEECCC
Confidence 3556777765 46677777543
No 187
>PF11462 DUF3203: Protein of unknown function (DUF3203); InterPro: IPR021564 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria. ; PDB: 1YWY_A.
Probab=52.46 E-value=14 Score=26.98 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=19.1
Q ss_pred CCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEe
Q 031020 53 GSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 53 ~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN 98 (167)
.+.|+|..|++ -+|-.+-.+|+|+|+|-
T Consensus 25 ~~~v~I~TD~e------------------~~MSv~~l~g~Ri~ItE 52 (74)
T PF11462_consen 25 APDVEIITDPE------------------KRMSVVELDGERIYITE 52 (74)
T ss_dssp GGGEEEEEETT------------------TTEEEEEETT--EE--H
T ss_pred cCceEEecChH------------------HceEEEEEcCcEEecCH
Confidence 35677777776 68999999999999985
No 188
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=51.95 E-value=1.2e+02 Score=29.07 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=41.7
Q ss_pred eeEEEEecC--CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 5 ITDFLISLD--DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 5 ~tdI~IS~D--dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+||+.|+.- .-+||-+. .+..|+.||++- .+|.-++..- ..+
T Consensus 177 ITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~---g~LLlti~fp--------------------------------~si 220 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTAS-EDRTIKLWDLSL---GVLLLTITFP--------------------------------SSI 220 (476)
T ss_pred eEEEEecCCCccceEEEec-CCceEEEEEecc---ceeeEEEecC--------------------------------Ccc
Confidence 688888765 34566554 567899999885 3444444321 127
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
.-++++|-+++.|+.++
T Consensus 221 ~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTE 237 (476)
T ss_pred eeEEEcccccEEEecCC
Confidence 88999999999999996
No 189
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=51.62 E-value=2e+02 Score=26.59 Aligned_cols=129 Identities=11% Similarity=-0.010 Sum_probs=61.2
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
-+|...+.+--|.+|.|-.+.|...|.. ++++.=.+...+.+.....=.+..--+....|-...-.+-....+....
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~---t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~ 350 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYR---TGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTA 350 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-T---TS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEE
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECC---CCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccce
Confidence 3566677677889999999999988843 4666533322221211100000000000001100001122344556678
Q ss_pred EEccCC---CEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCce
Q 031020 86 QLSLDG---KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNF 137 (167)
Q Consensus 86 ~LS~DG---krLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F 137 (167)
.+.++| ..+..-|.-+..-...-|+....+.+..+++.||..++..++--.|
T Consensus 351 ~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw~y 405 (477)
T PF05935_consen 351 HLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVWEY 405 (477)
T ss_dssp EE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEEEe
Confidence 889999 9999999877776665555555557888888998777665544433
No 190
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.21 E-value=32 Score=32.78 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=45.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCC-CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~-~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
-|+.+++.+-- =|..|.-..|.|+.|.|.+.. .-.+...+++-| .-
T Consensus 382 Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G--------------------------------fV 428 (479)
T KOG0299|consen 382 WITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG--------------------------------FV 428 (479)
T ss_pred ceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeeccccc--------------------------------EE
Confidence 35666666654 455676678999999999742 234455555444 46
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
+-++++.+|+||+|+.-
T Consensus 429 Nsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEEccCCCEEEEecc
Confidence 78999999999999975
No 191
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=50.88 E-value=98 Score=28.40 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCe----------EEEEEEeCceeecCCceeEeeCCCCCCCCCCcccc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV----------LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ 74 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pk----------lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~ 74 (167)
+..+.|||.+--.|||+--......||+.++.... -+-..+.|-.|.+++.=-.+.=.|+..--+.....
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 45678888555678998888888999988642211 12334455555444332222223333322333333
Q ss_pred CccCCCCCceEEEccCCCEEEEE
Q 031020 75 GHRLRGGPQMIQLSLDGKRLYVT 97 (167)
Q Consensus 75 g~~~~g~P~~~~LS~DGkrLyVa 97 (167)
...+..+-.-+.+|..||.||..
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred cCcccCCceeEEEcccccEEEee
Confidence 44556677889999999999994
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=50.12 E-value=32 Score=31.99 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 38 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~p 38 (167)
+-+|.+...+||..||+-.|-.+.|-+|||..-..|
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 347889999999999999999999999999864444
No 193
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=49.75 E-value=59 Score=30.22 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=16.1
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
-|.+++|.||..|...|
T Consensus 356 VRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 356 VRQTSFSRDGSILVLVC 372 (385)
T ss_pred eeeeeecccCcEEEEEe
Confidence 88999999999999988
No 194
>PRK13616 lipoprotein LpqB; Provisional
Probab=49.60 E-value=1.2e+02 Score=29.34 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.1
Q ss_pred CCceeEEEEecCCCEEEEEe
Q 031020 2 PGLITDFLISLDDRFLYFSN 21 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSn 21 (167)
++-++++.+|+||++|.+..
T Consensus 447 ~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE
Confidence 34588999999999988754
No 195
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=49.31 E-value=7.6 Score=23.93 Aligned_cols=11 Identities=64% Similarity=1.153 Sum_probs=10.0
Q ss_pred eecCCCCcCcc
Q 031020 154 MRYPGGDCTSD 164 (167)
Q Consensus 154 ~r~pggdctsd 164 (167)
-||+|--||||
T Consensus 3 C~~nGqQCtSD 13 (31)
T PF08116_consen 3 CRYNGQQCTSD 13 (31)
T ss_pred cccCccccCcC
Confidence 38999999999
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.20 E-value=31 Score=34.25 Aligned_cols=41 Identities=17% Similarity=0.468 Sum_probs=30.8
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
+++-...+.|---+|+||. ...|+.||++. ..|+-++-+|-
T Consensus 567 G~vq~v~FHPs~p~lfVaT--q~~vRiYdL~k---qelvKkL~tg~ 607 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVAT--QRSVRIYDLSK---QELVKKLLTGS 607 (733)
T ss_pred CceeEEEecCCCceEEEEe--ccceEEEehhH---HHHHHHHhcCC
Confidence 5677889999999999997 57899999885 44444444443
No 197
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=49.05 E-value=35 Score=26.97 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEecCCCEEEEEeCCCCcEEEEeccCCCCCeE
Q 031020 9 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 40 (167)
Q Consensus 9 ~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl 40 (167)
...+|-+-||++.+|++.|+.|.|++ ..|.+
T Consensus 17 ~yD~dt~llyl~gKGD~~ir~yEv~~-~~p~l 47 (136)
T PF08954_consen 17 FYDEDTNLLYLAGKGDGNIRYYEVSD-ESPYL 47 (136)
T ss_dssp EE-TTT-EEEEEETT-S-EEEEEE-S-STTSE
T ss_pred eEcCCCCEEEEEeccCcEEEEEEEcC-CCCce
Confidence 34678899999999999999999996 45655
No 198
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.96 E-value=65 Score=32.83 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=61.3
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+.|=.|.+|||++.. |..-.+..|.-||.. ++-. .+|.-.+- +++++...+ +++.--
T Consensus 455 gaIWsi~~~pD~~g~-vT~saDktVkfWdf~------l~~~--~~gt~~k~--lsl~~~rtL------------el~ddv 511 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGF-VTGSADKTVKFWDFK------LVVS--VPGTQKKV--LSLKHTRTL------------ELEDDV 511 (888)
T ss_pred cceeeeeecCCCCce-EEecCCcEEEEEeEE------EEec--cCccccee--eeeccceEE------------eccccE
Confidence 346679999999876 455567889988843 3322 34422111 222332111 111113
Q ss_pred ceEEEccCCCEEEEEeCCCcccc-------ccccccccccCcEEEEEEeeCCCCCe---eecCceeE---eccCC
Q 031020 83 QMIQLSLDGKRLYVTNSLFSAWD-------CQFYPELKEKGSHMLQIDVNSEKGGM---AINPNFFV---DFEAE 144 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNsl~s~wD-------~Qfyp~~~~~g~~~~~~dvD~~~G~l---~l~~~F~v---Df~~~ 144 (167)
--+.+|||||+|.|+ |+.+== =.||=.+.-..--++-+|+-++.-.+ ..|++.-| |||..
T Consensus 512 L~v~~Spdgk~LaVs--LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVS--LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EEEEEcCCCcEEEEE--eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 345689999999874 222222 23555554334445556775543322 24444443 77653
No 199
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=48.71 E-value=1.6e+02 Score=26.03 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=14.2
Q ss_pred CceeEEEEecCCCEEEEEeCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLH 24 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~h 24 (167)
+.+.++.-++||++|.||.+++
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSS
T ss_pred ceeEeEEECCCCcEEEEECccc
Confidence 4567788889999888887643
No 200
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=48.33 E-value=1.7e+02 Score=28.34 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=57.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEE-----------EeCceeecC--CceeEeeC-CCCCCCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI-----------WVGGLFRKG--SPVVAVTD-DGQPYQSD 69 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v-----------~~GG~~~~~--~~v~v~~~-~~~~~~p~ 69 (167)
.+-+|.+=+++|+. ||.-...+|++|+..-|---|++..+ +-|+.+.-. .+-+++-. .++-.+..
T Consensus 344 ~i~~i~F~~~g~rF-issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 344 AILDITFVDEGRRF-ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred heeeeEEccCCceE-eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 45678888888775 66678889999997754333332111 111211100 11122211 22222223
Q ss_pred CccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020 70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
-...+|..+.|.+=.+.+||||++|.-.++
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 355678889999999999999999999884
No 201
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=48.22 E-value=80 Score=26.84 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=41.3
Q ss_pred EEEEEeCCCCc-EEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEE
Q 031020 16 FLYFSNWLHGD-IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL 94 (167)
Q Consensus 16 fLYVSnw~hg~-I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrL 94 (167)
|+|+..|..+. .--|+-+...++++. |+.|-.+ .|+++..+.++- +...++- -..-|.+-.++.|||-|
T Consensus 63 ~i~l~a~~~~~~~~nfnGts~G~m~i~--VPAGw~V----~i~f~N~~~l~H--nl~iv~~--~~~~p~~~~i~~DgkIl 132 (196)
T PF06525_consen 63 FIYLVAWSSGTNPFNFNGTSNGQMTIY--VPAGWNV----QITFTNQESLPH--NLVIVQN--DTPTPNNPPISSDGKIL 132 (196)
T ss_pred EEEEEEccCCCCceeeecccCCcEEEE--EcCCCEE----EEEEEcCCCCCe--eEEEEeC--CCCCCCccccCCCCcee
Confidence 78899999886 777777766666665 7887644 244444332221 1111110 01127777899999976
No 202
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=47.67 E-value=1e+02 Score=31.82 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=22.9
Q ss_pred EEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe-eec
Q 031020 86 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM-AIN 134 (167)
Q Consensus 86 ~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l-~l~ 134 (167)
.+||||++|--+.| | +.+.....++..|+++...+| ||+
T Consensus 356 ~~SPDG~~vAY~ts--------~--e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 356 DISPDGKKVAFCTG--------I--EGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred cCCCCCCEEEEEEe--------e--cCCCCCceEEEEehhccCCCceEee
Confidence 57999999877554 2 221224456666776665553 543
No 203
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.28 E-value=1.7e+02 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.004 Sum_probs=20.9
Q ss_pred ceeEEEEecCCCEEEEEeC--CCCcEEEEecc
Q 031020 4 LITDFLISLDDRFLYFSNW--LHGDIRQYNIE 33 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw--~hg~I~qyDIs 33 (167)
-|+++.||+||..+-+-.. +.+.|.+--|.
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 4789999999988766552 24566655555
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=47.12 E-value=1.6e+02 Score=29.07 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=56.5
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCC---CCeEEEEEEeCceeecCCceeEeeCCC-CCCCCCCccccCccCCCC
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPK---NPVLTGQIWVGGLFRKGSPVVAVTDDG-QPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~---~pklvg~v~~GG~~~~~~~v~v~~~~~-~~~~p~~~~~~g~~~~g~ 81 (167)
|-|.-=|-+.-+++..-..|.+..||..-+. +|.. .-+..|+.| +|.+.+- ....|-.+...|+ |+
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~-~~~k~~~~f------~i~t~ksk~~rNPv~~w~~~~---g~ 292 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY-QALKDGDQF------AILTSKSKKTRNPVARWHIGE---GS 292 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc-cccCCCCee------EEeeeeccccCCccceeEecc---cc
Confidence 3444444444555555557888888764321 2221 123333333 3444422 2337777776665 48
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCC
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE 127 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~ 127 (167)
++.|++|+||++|-+-. | .+.+-.||-|+.
T Consensus 293 in~f~FS~DG~~LA~VS--------q--------DGfLRvF~fdt~ 322 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVS--------Q--------DGFLRIFDFDTQ 322 (636)
T ss_pred ccceeEcCCCceEEEEe--------c--------CceEEEeeccHH
Confidence 99999999999998766 2 446666888765
No 205
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=45.20 E-value=2.6e+02 Score=26.56 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=22.1
Q ss_pred eEEEEecCCCEEEEEeC-------------------CCCcEEEEeccC
Q 031020 6 TDFLISLDDRFLYFSNW-------------------LHGDIRQYNIED 34 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw-------------------~hg~I~qyDIsd 34 (167)
-+|.++|.+..||+++- .+|.|..|+.+.
T Consensus 353 Egi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~ 400 (524)
T PF05787_consen 353 EGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDG 400 (524)
T ss_pred cCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccC
Confidence 36889999999999863 345788887653
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=44.89 E-value=30 Score=31.34 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.7
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIs 33 (167)
++.+.|-+|+|-|--+.|.| .||+|.-.
T Consensus 254 v~gvrIRpD~KIlATAGWD~-RiRVyswr 281 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDH-RIRVYSWR 281 (323)
T ss_pred ccceEEccCCcEEeecccCC-cEEEEEec
Confidence 57899999999999999965 89999876
No 207
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.38 E-value=38 Score=34.10 Aligned_cols=31 Identities=39% Similarity=0.822 Sum_probs=24.6
Q ss_pred CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
||| +++|++|+.||.++ |+.+..+|+ .+|..
T Consensus 22 GG~--~~~s~nG~~L~t~~-----------------~d~Vi~idv--~t~~~ 52 (775)
T KOG0319|consen 22 GGP--VAWSSNGQHLYTAC-----------------GDRVIIIDV--ATGSI 52 (775)
T ss_pred CCc--eeECCCCCEEEEec-----------------CceEEEEEc--cCCce
Confidence 447 99999999999988 666777777 66655
No 208
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=43.70 E-value=1.1e+02 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 36 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~ 36 (167)
-++.++.||||.||-|.. -.+.|..|.|++..
T Consensus 449 ~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGS-HDNHIYIYRVSANG 480 (626)
T ss_pred ceEEEEEcCCCCEEEEec-CCCeEEEEEECCCC
Confidence 468899999999999887 46899999999743
No 209
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.42 E-value=1.9e+02 Score=26.38 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=28.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
-++++.-+||.|+||+-.=-.-.|.- ++ ....++.++++-|
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVE--lt--~~GdlirtiPL~g 127 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVE--LT--KEGDLIRTIPLTG 127 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEE--Ee--cCCceEEEecccc
Confidence 36889999999999976533334443 33 2467888888877
No 210
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=43.36 E-value=2.2e+02 Score=25.56 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=15.2
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
|-++.|||+..|..|+|
T Consensus 47 Rkl~WSpD~tlLa~a~S 63 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAES 63 (282)
T ss_pred eEEEECCCCcEEEEEcC
Confidence 46889999999999996
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.17 E-value=1.5e+02 Score=27.49 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=20.0
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 125 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD 125 (167)
.+.+..|+||.++-.++ +++-.+++++-+
T Consensus 147 vk~V~Ws~~g~~val~t---------------~~~i~il~~~~~ 175 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVT---------------KDSIYILKYNLE 175 (443)
T ss_dssp -EEEEE-TTSSEEEEE----------------S-SEEEEEE-HH
T ss_pred CcEEEEECCCCEEEEEe---------------CCeEEEEEecch
Confidence 48899999999999988 466777777776
No 212
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=41.52 E-value=2.8e+02 Score=25.30 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=46.3
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 82 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P 82 (167)
+-|-+.+.-.-++.+. |.-..+.||.||+.. .+.+.++.+-- + +
T Consensus 144 g~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rT---gt~v~sL~~~s----------------------------~----V 187 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCIL-SSADDKTVRLWDHRT---GTEVQSLEFNS----------------------------P----V 187 (334)
T ss_pred CcceeEEEeccCceEE-eeccCCceEEEEecc---CcEEEEEecCC----------------------------C----C
Confidence 3444444444455443 446789999999653 67777776543 2 7
Q ss_pred ceEEEccCCCEEEEEeC-CCcccccccc
Q 031020 83 QMIQLSLDGKRLYVTNS-LFSAWDCQFY 109 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs-l~s~wD~Qfy 109 (167)
.-+.+|.||+.|-.|.. --+=||...+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccc
Confidence 88899999998877652 2334666543
No 213
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=40.94 E-value=28 Score=32.24 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=15.8
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
|+-+|||+|+.++.+|-
T Consensus 221 ~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 221 PNGLALSPDGSFVLVAE 237 (376)
T ss_pred cccccCCCCCCEEEEEe
Confidence 99999999999999876
No 214
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=40.48 E-value=77 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=24.4
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.|.|+++||.| --|++|-..|.|..||..-
T Consensus 182 aIRdlafSpnD-skF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 182 AIRDLAFSPND-SKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhheeccCCCC-ceeEEecCCCeEEEEeccC
Confidence 46789999866 3457999999999999765
No 215
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=40.46 E-value=1.6e+02 Score=27.05 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.6
Q ss_pred CCCEEEEEeCCCCcEEEEecc
Q 031020 13 DDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIs 33 (167)
-+-+||.+|+..+.|.+||-+
T Consensus 150 ~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 150 GGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCceEEEeccCCCceEEecCc
Confidence 478999999999999999844
No 216
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=40.08 E-value=1.3e+02 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=30.5
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEE
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTG 42 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg 42 (167)
.|.|++.+||.|||+|+ -.++|+.|+..++ +.|+.+-
T Consensus 16 ~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~ 53 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETID 53 (933)
T ss_pred eEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhh
Confidence 47899999999999887 5789999998776 6676553
No 217
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.78 E-value=39 Score=34.11 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=47.9
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe---CceeecCCceeEeeCC-------CCCCCC-CCccccC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV---GGLFRKGSPVVAVTDD-------GQPYQS-DVPEVQG 75 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~---GG~~~~~~~v~v~~~~-------~~~~~p-~~~~~~g 75 (167)
=+.+||||||+-.-+ ....|..||.+. .++.-.... -+....+.|..|+... -.|+.- -.....|
T Consensus 159 ~l~lsP~Gr~v~~g~-ed~tvki~d~~a---gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGG-EDNTVKIWDLTA---GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred EEeecCCCceeeccC-Ccceeeeecccc---cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 368999999985443 357899999764 333311110 0000011222222110 001111 1133445
Q ss_pred ccCCCCCceEEEccCCCEEEEEeC
Q 031020 76 HRLRGGPQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 76 ~~~~g~P~~~~LS~DGkrLyVaNs 99 (167)
+....++|-..+++||+.++-.-+
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCccCCceeeeecCCceeeecCch
Confidence 556778999999999999986553
No 218
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=39.47 E-value=1.5e+02 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 124 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv 124 (167)
|-|+++..-+||-.|..++ +.++.|+|+.-
T Consensus 367 gR~~dV~v~~DGallv~~D---------------~~~g~i~Rv~~ 396 (399)
T COG2133 367 GRPRDVAVAPDGALLVLTD---------------QGDGRILRVSY 396 (399)
T ss_pred CcccceEECCCCeEEEeec---------------CCCCeEEEecC
Confidence 3499999999999888877 23568887643
No 219
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=98 Score=28.55 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=23.1
Q ss_pred eeCCCCCCCCCC-ccccCccCCCCCceEEEccCCCEEEEEe
Q 031020 59 VTDDGQPYQSDV-PEVQGHRLRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 59 ~~~~~~~~~p~~-~~~~g~~~~g~P~~~~LS~DGkrLyVaN 98 (167)
.=|.....+|.+ .-.+|||+.|- =++|+||++||.|-
T Consensus 95 vfD~~~~~~pv~~~s~~~RHfyGH---Gvfs~dG~~LYATE 132 (366)
T COG3490 95 VFDPNGAQEPVTLVSQEGRHFYGH---GVFSPDGRLLYATE 132 (366)
T ss_pred EECCCCCcCcEEEecccCceeecc---cccCCCCcEEEeec
Confidence 334444445543 44556664442 36899999999986
No 220
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=39.18 E-value=1.5e+02 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcEEEEeccCCCCCeEEEE
Q 031020 16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQ 43 (167)
Q Consensus 16 fLYVSnw~hg~I~qyDIsdp~~pklvg~ 43 (167)
+++|+- -+|+|+||.+.|.++.|..++
T Consensus 170 yvfV~~-~qG~~~Qy~l~d~gnGkv~~k 196 (364)
T COG4247 170 YVFVNR-RQGDIAQYKLIDQGNGKVGTK 196 (364)
T ss_pred EEEEec-CCCceeEEEEEecCCceEcce
Confidence 566655 569999999999888876543
No 221
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=39.04 E-value=1.8e+02 Score=27.52 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=42.1
Q ss_pred eEEEccCCCEEEEEeCCCccc----cccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCC
Q 031020 84 MIQLSLDGKRLYVTNSLFSAW----DCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG 159 (167)
Q Consensus 84 ~~~LS~DGkrLyVaNsl~s~w----D~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pgg 159 (167)
.+....+|. +||-..=+..+ ..|. .+-+-++||. +|..++|+++|.|+.+..+| -....|-|=|+
T Consensus 279 ~i~~~enGD-vYvfS~s~a~~~~~~~~~s-----tkPSGilRIk----~G~teFD~~Yffnle~~sgg-~~~~~~~yIG~ 347 (435)
T PF14298_consen 279 GIWKDENGD-VYVFSPSYAKTMSDGKSQS-----TKPSGILRIK----KGTTEFDKSYFFNLEAKSGG-YKFFRVWYIGN 347 (435)
T ss_pred eeeEeCCCC-EEEEcCccccccccccccc-----CCccEEEEEC----CCCcccCcceEeeeecccCC-cceEEEEEecC
Confidence 455677787 66443323322 2333 4456777774 57889999999999998887 33445556565
Q ss_pred C
Q 031020 160 D 160 (167)
Q Consensus 160 d 160 (167)
+
T Consensus 348 ~ 348 (435)
T PF14298_consen 348 N 348 (435)
T ss_pred C
Confidence 4
No 222
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=39.03 E-value=2.6e+02 Score=25.60 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=41.2
Q ss_pred EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020 8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 87 (167)
Q Consensus 8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L 87 (167)
|.|+-|-+.| ++.-...++..||+.. .|...++.++-. -+-+.+
T Consensus 58 ~Did~~s~~l-iTGSAD~t~kLWDv~t---Gk~la~~k~~~~--------------------------------Vk~~~F 101 (327)
T KOG0643|consen 58 CDIDWDSKHL-ITGSADQTAKLWDVET---GKQLATWKTNSP--------------------------------VKRVDF 101 (327)
T ss_pred EEecCCccee-eeccccceeEEEEcCC---CcEEEEeecCCe--------------------------------eEEEee
Confidence 4445555544 4444556666666543 555555555441 456779
Q ss_pred ccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020 88 SLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 124 (167)
Q Consensus 88 S~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv 124 (167)
|.+|.+..++. |+|- .+...+-.+|+
T Consensus 102 ~~~gn~~l~~t------D~~m-----g~~~~v~~fdi 127 (327)
T KOG0643|consen 102 SFGGNLILAST------DKQM-----GYTCFVSVFDI 127 (327)
T ss_pred ccCCcEEEEEe------hhhc-----CcceEEEEEEc
Confidence 99999988887 4552 34445555665
No 223
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.54 E-value=1.6e+02 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-+++|.|+|-+|. -+|--++..+|.|++-.
T Consensus 129 ~Vt~lsiHPS~KL-ALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 129 QVTDLSIHPSGKL-ALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccceeEecCCCce-EEEEcCCceeeeehhhc
Confidence 4789999999974 57888899999999764
No 224
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=36.14 E-value=2.5e+02 Score=28.21 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=45.8
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
+.|.++-|..-|++..=.+.++-.++.+.|.--++.+..+. + .. +.-.-+
T Consensus 432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~--------------------~~---------~~I~~l 481 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A--------------------KC---------PSISRL 481 (691)
T ss_pred eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c--------------------CC---------CcceeE
Confidence 56777777666655543455666666554333333333222 1 01 114568
Q ss_pred EEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020 86 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 131 (167)
Q Consensus 86 ~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l 131 (167)
..|+||.+|.|++. -+.|..+++ +++..
T Consensus 482 ~~SsdG~yiaa~~t----------------~g~I~v~nl--~~~~~ 509 (691)
T KOG2048|consen 482 VVSSDGNYIAAIST----------------RGQIFVYNL--ETLES 509 (691)
T ss_pred EEcCCCCEEEEEec----------------cceEEEEEc--cccee
Confidence 89999999999993 346666777 55554
No 225
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=36.09 E-value=47 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.694 Sum_probs=26.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+++|+.+|+|+.|..-.+| ++.++.||+..
T Consensus 65 ~v~dv~~s~dg~~alS~sw-D~~lrlWDl~~ 94 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASW-DGTLRLWDLAT 94 (315)
T ss_pred EecceEEccCCceEEeccc-cceEEEEEecC
Confidence 5899999999999987777 67999999875
No 226
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.45 E-value=33 Score=33.56 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=22.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
...+.+.||||.|||-|. +.+.+|++..
T Consensus 223 v~qllL~Pdg~~LYv~~g--~~~~v~~L~~ 250 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG--SELVVALLDK 250 (733)
T ss_pred hHhhEECCCCCEEEEecC--CeEEEEeecc
Confidence 467899999999999997 6777777654
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=35.28 E-value=1.3e+02 Score=28.29 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 81 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~ 81 (167)
|+-++.|.-|||||.+....--|-.|-+|.+... ...++-... -+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~~~~~~pK----------------------------------~~ 135 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KGYLLPHPK----------------------------------TN 135 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccc-eeEEecccc----------------------------------cC
Confidence 4557889999999999887777888888887641 111221111 12
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEE--EEeeCCC-CCe--eecCceeE
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ--IDVNSEK-GGM--AINPNFFV 139 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~--~dvD~~~-G~l--~l~~~F~v 139 (167)
-+-.++.+||++.-.+. .-|..-|=.+.+..++++. +++|+.. -++ ..|.+.++
T Consensus 136 ~kg~~f~~dg~f~ai~s----RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 136 VKGYAFHPDGQFCAILS----RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred ceeEEECCCCceeeeee----cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE
Confidence 46788999999876655 4476555554434445444 5665442 222 35555554
No 228
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=35.15 E-value=61 Score=19.34 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCEEEEEeCCCCcEEEEecc
Q 031020 12 LDDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 12 ~DdRfLYVSnw~hg~I~qyDIs 33 (167)
.++..||+.+. .|.|..+|..
T Consensus 19 v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 19 VAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp ECTSEEEEE-T-TSEEEEEETT
T ss_pred EECCEEEEEcC-CCEEEEEeCC
Confidence 35679999997 7889988864
No 229
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=34.63 E-value=33 Score=31.99 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEE
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQ 29 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~q 29 (167)
+++|+++|+|++|+--|-| .+.||+
T Consensus 153 ml~dVavS~D~~~IitaDR-DEkIRv 177 (390)
T KOG3914|consen 153 MLLDVAVSPDDQFIITADR-DEKIRV 177 (390)
T ss_pred hhheeeecCCCCEEEEecC-CceEEE
Confidence 5799999999999998887 457774
No 230
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=34.03 E-value=3.1e+02 Score=23.73 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=17.3
Q ss_pred ceeEEEEe-cCCCEEEEEeCCC
Q 031020 4 LITDFLIS-LDDRFLYFSNWLH 24 (167)
Q Consensus 4 l~tdI~IS-~DdRfLYVSnw~h 24 (167)
-+++|... .+++|+-||-+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGP 42 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCC
Confidence 35889998 7889998998876
No 231
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=34.00 E-value=1.6e+02 Score=25.23 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=49.2
Q ss_pred EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEE
Q 031020 16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 95 (167)
Q Consensus 16 fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLy 95 (167)
|||...|..|..+.|+.+........=-|+.|-.+ .|+++..+.++-.= ....++.. .|+...++.|||+|.
T Consensus 61 fI~Lvv~~~g~~~~fNfnGts~G~mtIyiPaGw~V----~V~f~N~e~~pHnl-~iv~n~t~---~P~~~~~s~dgkil~ 132 (195)
T TIGR03094 61 FLTLVVWGSGNAYPFNFNGTSYGAMTIYLPAGWNV----YVTFTNYESLPHNL-KLLPNSTQ---TPRGPIWAHTGKIIN 132 (195)
T ss_pred EEEEEEeccCCcccccccCccCCceEEEEeCCCEE----EEEEEcCCCCCccE-EEecCCCC---CCCccccccCceeEe
Confidence 78999999999888888875554444447766533 23333334333211 11222222 388888999999997
Q ss_pred EEeCCCcccc
Q 031020 96 VTNSLFSAWD 105 (167)
Q Consensus 96 VaNsl~s~wD 105 (167)
..=.--+.|.
T Consensus 133 ~vG~~~s~~~ 142 (195)
T TIGR03094 133 STGATTSIYY 142 (195)
T ss_pred ecccccCccc
Confidence 7554334443
No 232
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=33.98 E-value=1.4e+02 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.4
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-.|.++|-|.||.|.. .|..++.|||..
T Consensus 220 rsiSfHPsGefllvgT-dHp~~rlYdv~T 247 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT-DHPTLRLYDVNT 247 (430)
T ss_pred eeEeecCCCceEEEec-CCCceeEEeccc
Confidence 4588999999998877 799999999974
No 233
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=33.89 E-value=62 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.0
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 38 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~p 38 (167)
+|.|.+|||||||.-.+|. -.+..|.+.+..++
T Consensus 575 VT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEEECCCCcEEEEeecC-ceEEeeeeecccch
Confidence 6899999999999888874 47888887654333
No 234
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=33.86 E-value=2.2e+02 Score=21.88 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=23.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
.-+.++.++++++++.......+.+..|++..
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 34568999999995544432489999999875
No 235
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=33.76 E-value=2.2e+02 Score=27.57 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC--CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN--PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 79 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~--pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~ 79 (167)
|..++-+.++|.+-.|-+..=-+|.|..||+..... +.-....... ++++= .-+.+.+..
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s---h~~~v---------------~~vvW~~~~ 303 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS---HSEPV---------------TAVVWLQNE 303 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc---CCcCe---------------EEEEEeccC
Confidence 345788999999999999998999999999987544 2111111111 11111 111122211
Q ss_pred CCCceEEEccCCCEEEEEeCCCcc
Q 031020 80 GGPQMIQLSLDGKRLYVTNSLFSA 103 (167)
Q Consensus 80 g~P~~~~LS~DGkrLyVaNsl~s~ 103 (167)
..-+.+.+|.||+..+.-..+++.
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~ 327 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSL 327 (555)
T ss_pred CCCceEEEecCCcEeeeecccccc
Confidence 224578899999999986655443
No 236
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=33.71 E-value=2e+02 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=29.0
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccC---CCCC-eEEEEEEe
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIED---PKNP-VLTGQIWV 46 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsd---p~~p-klvg~v~~ 46 (167)
.|.+||-+ +++||+=+.+....||..- +..+ .|+-.|+.
T Consensus 27 Gia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~ 69 (336)
T TIGR03118 27 GLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPA 69 (336)
T ss_pred eeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecC
Confidence 47899977 9999999999999999861 1112 35666664
No 237
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.55 E-value=91 Score=32.26 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.4
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIs 33 (167)
++|+.-||||++| ||+-..+.|.+|+-.
T Consensus 132 V~Dv~Wsp~~~~l-vS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 132 VLDVNWSPDDSLL-VSVSLDNSVIIWNAK 159 (942)
T ss_pred cceeccCCCccEE-EEecccceEEEEccc
Confidence 6899999999988 999999999999955
No 238
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.08 E-value=1e+02 Score=30.80 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
-+.+..-|.+||+||- +++|..|++..
T Consensus 276 nL~lDssGt~L~AsCt-D~sIy~ynm~s 302 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT-DNSIYFYNMRS 302 (720)
T ss_pred EEEecCCCCeEEEEec-CCcEEEEeccc
Confidence 3445555699999997 99999999874
No 239
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=32.94 E-value=3.5e+02 Score=24.52 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred eeEEEEecCCCEE----------EEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcccc
Q 031020 5 ITDFLISLDDRFL----------YFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ 74 (167)
Q Consensus 5 ~tdI~IS~DdRfL----------YVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~ 74 (167)
+..|.+||++||| .+|.-....+..|++.....|+.. .|.|...
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~--~WCG~da------------------------ 272 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQM--AWCGNDA------------------------ 272 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEE--EEECCCc------------------------
Q ss_pred CccCCCCCceEEE-ccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEec
Q 031020 75 GHRLRGGPQMIQL-SLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF 141 (167)
Q Consensus 75 g~~~~g~P~~~~L-S~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf 141 (167)
-+-.+++.+.| .++|.++-... ++...+.-.+| |+++=..--++|
T Consensus 273 --v~l~~~~~l~lvg~~~~~~~~~~----------------~~~~~l~~E~D----G~riit~~~~~~ 318 (410)
T PF04841_consen 273 --VVLSWEDELLLVGPDGDSISFWY----------------DGPVILVSEID----GVRIITSTSHEF 318 (410)
T ss_pred --EEEEeCCEEEEECCCCCceEEec----------------cCceEEeccCC----ceEEEeCCceEE
No 240
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.90 E-value=1.7e+02 Score=27.72 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=30.3
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 47 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G 47 (167)
|.-|..+|-..++.+||..+++|..||.-. .+....|-++
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~---~~Pl~KVi~~ 229 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQ---ASPLKKVILT 229 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEeccc---CCccceeeee
Confidence 466888999999999999999999999653 3333444443
No 241
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=32.32 E-value=1.7e+02 Score=20.23 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=41.6
Q ss_pred CceEEEccCCCEEEEEeCCCccccccccccccccCcEEE--EEEeeCCCCCee-ecCceeEeccC
Q 031020 82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML--QIDVNSEKGGMA-INPNFFVDFEA 143 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~--~~dvD~~~G~l~-l~~~F~vDf~~ 143 (167)
..|+-+.-.|.++.++- ++.+-+.|+|.+.+ |.+.. .+.|-+.++..+ .+.+|-+-|..
T Consensus 21 ~~miL~De~G~~I~a~i--~~~~~~~f~~~L~e-g~vy~is~f~v~~~~~~y~~~~~~y~I~f~~ 82 (86)
T cd04480 21 LEMVLVDEKGNRIHATI--PKRLAAKFRPLLKE-GKWYTISNFEVAPNTGSYRPTDHPYKIKFMS 82 (86)
T ss_pred EEEEEEcCCCCEEEEEE--CHHHHHhhhhhcee-CCEEEEeeEEEEcCCCcccccCCcEEEEeec
Confidence 78888999999999987 45556667776654 54443 277877777774 44557777754
No 242
>PRK10115 protease 2; Provisional
Probab=32.30 E-value=1.3e+02 Score=29.29 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=14.2
Q ss_pred eeEEEEecCCCEEEEEeCCCC
Q 031020 5 ITDFLISLDDRFLYFSNWLHG 25 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg 25 (167)
++.+.+|||+|+|..+---.|
T Consensus 129 l~~~~~Spdg~~la~~~d~~G 149 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLS 149 (686)
T ss_pred EeEEEECCCCCEEEEEecCCC
Confidence 456778888888777744333
No 243
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=31.95 E-value=1e+02 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.0
Q ss_pred ceEEEccCCCEEEEEeC
Q 031020 83 QMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaNs 99 (167)
+.+++-+|||.|.+.+.
T Consensus 4 ~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYV 20 (55)
T ss_pred EEEEECCCCcEEEEEEe
Confidence 46788899999999874
No 244
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=31.84 E-value=1.7e+02 Score=31.61 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=26.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
+..++.|.+..=|+||+-.+|.|++|+...
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k 1080 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRK 1080 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehh
Confidence 447899999988999999999999999654
No 245
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=31.36 E-value=2e+02 Score=26.40 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=23.6
Q ss_pred CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCcee
Q 031020 13 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLF 50 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~ 50 (167)
.+..||+.+ ..|.|..+|.. +.++.-+..+++.+
T Consensus 405 ~g~~v~~g~-~dG~l~ald~~---tG~~lW~~~~~~~~ 438 (488)
T cd00216 405 AGNLVFAGA-ADGYFRAFDAT---TGKELWKFRTPSGI 438 (488)
T ss_pred cCCeEEEEC-CCCeEEEEECC---CCceeeEEECCCCc
Confidence 557888876 57788888844 46777777776633
No 246
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=31.22 E-value=1.8e+02 Score=30.05 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=33.8
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 45 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~ 45 (167)
|-+|.+.+.-||+.+.+|..-.|++..||+++ -|++.++.
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~---kkl~~v~~ 284 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK---KKLINVTR 284 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCC---Ceeeeeee
Confidence 56899999999999999999999999999886 55555444
No 247
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=31.16 E-value=1.1e+02 Score=30.94 Aligned_cols=17 Identities=29% Similarity=0.306 Sum_probs=15.0
Q ss_pred CceEEEccCCCEEEEEe
Q 031020 82 PQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaN 98 (167)
--.+.+|.|||||.+|+
T Consensus 621 I~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 621 IIGIDVTADGKWILATC 637 (794)
T ss_pred eeEEEecCCCcEEEEee
Confidence 45688999999999999
No 248
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.91 E-value=3e+02 Score=24.25 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCE
Q 031020 14 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR 93 (167)
Q Consensus 14 dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkr 93 (167)
+..||.=.|-.+..-+||.. +.+.++++..-| .|. =|.-||++
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~---tl~~~~~~~y~~-------------------------EGW---------GLt~dg~~ 141 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPN---TLKKIGTFPYPG-------------------------EGW---------GLTSDGKR 141 (264)
T ss_dssp TTEEEEEESSSSEEEEEETT---TTEEEEEEE-SS-------------------------S-----------EEEECSSC
T ss_pred CCEEEEEEecCCeEEEEccc---cceEEEEEecCC-------------------------cce---------EEEcCCCE
Confidence 44799999999999999954 588888876543 022 34589999
Q ss_pred EEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCC
Q 031020 94 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG 159 (167)
Q Consensus 94 LyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pgg 159 (167)
|++++- ++.+..+|. ++- ++....-|-.++.|-. ..-|+-|=+|
T Consensus 142 Li~SDG----------------S~~L~~~dP--~~f--~~~~~i~V~~~g~pv~--~LNELE~i~G 185 (264)
T PF05096_consen 142 LIMSDG----------------SSRLYFLDP--ETF--KEVRTIQVTDNGRPVS--NLNELEYING 185 (264)
T ss_dssp EEEE-S----------------SSEEEEE-T--TT---SEEEEEE-EETTEE-----EEEEEEETT
T ss_pred EEEECC----------------ccceEEECC--ccc--ceEEEEEEEECCEECC--CcEeEEEEcC
Confidence 999882 455555554 443 2333334433333333 5566666555
No 249
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.62 E-value=1.4e+02 Score=26.88 Aligned_cols=71 Identities=24% Similarity=0.385 Sum_probs=45.4
Q ss_pred EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEE
Q 031020 16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 95 (167)
Q Consensus 16 fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLy 95 (167)
...|+.--.|.+|.|||.+ |+..+-= + |.. -.-+.+|+||.-+.
T Consensus 156 heIvaGS~DGtvRtydiR~-------G~l~sDy-~------------------------g~p----it~vs~s~d~nc~L 199 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRK-------GTLSSDY-F------------------------GHP----ITSVSFSKDGNCSL 199 (307)
T ss_pred cEEEeeccCCcEEEEEeec-------ceeehhh-c------------------------CCc----ceeEEecCCCCEEE
Confidence 4567777788888888875 4433210 0 112 45678999999999
Q ss_pred EEeCCCccccccccccccccCcEEEEEEeeCCCCCee------ecCceeEe
Q 031020 96 VTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA------INPNFFVD 140 (167)
Q Consensus 96 VaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~------l~~~F~vD 140 (167)
+..- ++++-.+|- ++|+|. .|..|-+|
T Consensus 200 a~~l----------------~stlrLlDk--~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 200 ASSL----------------DSTLRLLDK--ETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred Eeec----------------cceeeeccc--chhHHHHHhcccccceeeee
Confidence 8872 556655666 778762 45555555
No 250
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=30.14 E-value=63 Score=31.70 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=12.0
Q ss_pred EEEccCCCEEEEEe
Q 031020 85 IQLSLDGKRLYVTN 98 (167)
Q Consensus 85 ~~LS~DGkrLyVaN 98 (167)
+-|.||||+|||-|
T Consensus 226 llL~Pdg~~LYv~~ 239 (733)
T COG4590 226 LLLTPDGKTLYVRT 239 (733)
T ss_pred hEECCCCCEEEEec
Confidence 34789999999988
No 251
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=30.08 E-value=4.2e+02 Score=29.36 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=61.5
Q ss_pred CEEEEEeCCCCcEEEEeccCCCCCeEEEEEE--eCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCC
Q 031020 15 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW--VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK 92 (167)
Q Consensus 15 RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~--~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGk 92 (167)
|-.+-+| +|.--||=..++.+|+++..+. .-+.+.+ += . .+.|-|=.|++| +|.
T Consensus 1442 rVs~k~n--~g~hlqfyYa~~~tP~lVTHvynhk~seits------Lf-Y--------------DdqghlfAME~s-sg~ 1497 (1899)
T KOG4659|consen 1442 RVSSKQN--LGDHLQFYYADLDTPTLVTHVYNHKNSEITS------LF-Y--------------DDQGHLFAMESS-SGT 1497 (1899)
T ss_pred eEEEecc--CCceEEEEeccCCCCeEEEEEeccCCcceee------EE-E--------------cCCCcEEEEEcC-CCc
Confidence 4445555 6777889899999999998887 3332211 10 0 123335556554 788
Q ss_pred EEEEEeCCCcccccccccccc-ccCcEEEEEEeeCCCCCe--eecCceeE--eccC
Q 031020 93 RLYVTNSLFSAWDCQFYPELK-EKGSHMLQIDVNSEKGGM--AINPNFFV--DFEA 143 (167)
Q Consensus 93 rLyVaNsl~s~wD~Qfyp~~~-~~g~~~~~~dvD~~~G~l--~l~~~F~v--Df~~ 143 (167)
|.|||+ |+.-=|.-+ ++++.|++.+.-+.-|.+ .-+++|++ +|..
T Consensus 1498 rYyvat------DntgTplAvfs~ng~mik~~~yt~yg~Iy~ds~p~fflpIgfhG 1547 (1899)
T KOG4659|consen 1498 RYYVAT------DNTGTPLAVFSDNGLMIKQIRYTAYGEIYSDSNPDFFLPIGFHG 1547 (1899)
T ss_pred eEEEEE------cCCCCeeEEEcCCCcEEEEEeccccceeccCCCCCceeEEeecc
Confidence 999998 333323222 667788887776666666 45677765 6654
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.86 E-value=87 Score=29.12 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.6
Q ss_pred CCceEEEccCCCEEEEEe
Q 031020 81 GPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 81 ~P~~~~LS~DGkrLyVaN 98 (167)
.||.++.+|.||.+.|+.
T Consensus 34 ~p~~ls~npngr~v~V~g 51 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG 51 (443)
T ss_dssp --SEEEE-TTSSEEEEEE
T ss_pred CCeeEEECCCCCEEEEEc
Confidence 399999999999999963
No 253
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.77 E-value=98 Score=28.51 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=30.0
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 40 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl 40 (167)
+=+--|++|||..+|-||. .+|.|.+|.+-|+.+.+-
T Consensus 227 A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTENTED 263 (346)
T ss_pred heEEEEEeCCCccEEEEEc-CCCeEEEEEeecCCCCcc
Confidence 3455789999999999987 799999999998554433
No 254
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=29.10 E-value=94 Score=28.23 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=27.0
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIs 33 (167)
++-+-.+.+|||| -||.|.--+|.||.|..+
T Consensus 267 ~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 267 FGPVHCVRFSPDG-ELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCceEEEEECCCC-ceeeccCCCceEEEEEec
Confidence 3456678999999 799999999999999977
No 255
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=28.84 E-value=71 Score=25.41 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=24.1
Q ss_pred CCccccCccCCCCCceEEEccCCCEEEEEe
Q 031020 69 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 69 ~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN 98 (167)
.+|+..|. |+||---=++||||+||=.|-
T Consensus 58 t~Pyt~GA-LRGGtHvHvfSpDG~~lSFTY 86 (122)
T PF12566_consen 58 TPPYTPGA-LRGGTHVHVFSPDGSWLSFTY 86 (122)
T ss_pred cCCCCCcc-ccCCccceEECCCCCEEEEEe
Confidence 34566674 899999999999999998776
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.67 E-value=4.4e+02 Score=26.29 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020 13 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 46 (167)
Q Consensus 13 DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~ 46 (167)
+|..|-|=. ..+.||.|||+++.+|.++..+..
T Consensus 160 ~~~~l~vLt-sdn~lR~y~~~~~~~p~~v~~~~~ 192 (717)
T PF10168_consen 160 SDSHLVVLT-SDNTLRLYDISDPQHPWQVLSLSP 192 (717)
T ss_pred CCCeEEEEe-cCCEEEEEecCCCCCCeEEEEccc
Confidence 356665544 478999999999999999877653
No 257
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=28.25 E-value=1.2e+02 Score=30.90 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=72.5
Q ss_pred EeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCC--EEEEE
Q 031020 20 SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK--RLYVT 97 (167)
Q Consensus 20 Snw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGk--rLyVa 97 (167)
--|-+|.-+.+|+-...+-+-..-|++||.-+ .--||..+|+=+.|+|.|-=+ -+..|
T Consensus 62 ~e~~~grk~~id~f~k~~~~~~~gVPlGGiG~--------------------GsIgr~frGeF~~f~l~Pgi~e~~~~~~ 121 (879)
T KOG2119|consen 62 EEAWNGRKAFIDIFNKENHKSSHGVPLGGIGC--------------------GSIGRDFRGEFQRFQLFPGICEEEPVLA 121 (879)
T ss_pred hhhhCCcccceecccccccccccccccccccc--------------------ccccCccCCccceEEecCcccccchhhh
Confidence 34567888888888777778788899998431 123778899999999988433 34556
Q ss_pred eCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCCcC
Q 031020 98 NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCT 162 (167)
Q Consensus 98 Nsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggdct 162 (167)
| ||+--..+++..+.+.-.-+.+++ -++.|++++-+|.--.||=+||
T Consensus 122 n--------QF~~~vs~~~g~iy~svLs~~~~~----------c~~~~~~gl~sWd~ni~~~~~~ 168 (879)
T KOG2119|consen 122 N--------QFIVFVSRPGGKIYQSVLSPGDPQ----------CGQRPATGLSSWDWNIPGEKST 168 (879)
T ss_pred c--------eEEEEEEcCCceEEEEeecCCCcc----------cccCCCCCccccccccCCccee
Confidence 7 776555555656666544333333 5667888888888888887775
No 258
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.25 E-value=1.8e+02 Score=28.98 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=55.9
Q ss_pred CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCC----CCCCC-ccccCccCCC-CCceEEEc
Q 031020 15 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP----YQSDV-PEVQGHRLRG-GPQMIQLS 88 (167)
Q Consensus 15 RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~----~~p~~-~~~~g~~~~g-~P~~~~LS 88 (167)
..+..+| .+.||.|+.+.+.+.-+.+ |.--+++.++.++.=.|.. +.|.+ +-|-|.+-.+ --.| +.
T Consensus 182 hL~iL~s--dnviRiy~lS~~telylqp----gepgRS~tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~--l~ 253 (741)
T KOG4460|consen 182 HLVLLTS--DNVIRIYSLSEPTELYLQP----GEPGRSPTNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGP--LA 253 (741)
T ss_pred eEEEEec--CcEEEEEecCCcchhhccC----CCcCCCCccceeeccCCcceeeeccCcccccccCchhhccCccc--cc
Confidence 3344444 5789999999865543321 1222334444444222221 12211 2222222111 0222 44
Q ss_pred cCCCEEEEEeCCCcc-ccccccccccccC----cEEEEEEeeCCCCCe
Q 031020 89 LDGKRLYVTNSLFSA-WDCQFYPELKEKG----SHMLQIDVNSEKGGM 131 (167)
Q Consensus 89 ~DGkrLyVaNsl~s~-wD~Qfyp~~~~~g----~~~~~~dvD~~~G~l 131 (167)
...|.|+++||+.+. |=.--+|.+.++| ..|++..++..+++|
T Consensus 254 ~S~ktL~~~nSs~k~E~iE~p~~~L~EnG~~~NIyi~~~~~~~~~~~L 301 (741)
T KOG4460|consen 254 ASPKTLFGQNSSGKDEVVEYPLYILYENGETFNIYISLLHSPGNIGKL 301 (741)
T ss_pred cCccceeeecccccceeEecceeeeeccCcceeEEEEEccCcchhhhh
Confidence 477999999997653 4444456676776 345556676666554
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.21 E-value=5.1e+02 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.7
Q ss_pred CCCCCceEEEccCCCEEEEEe
Q 031020 78 LRGGPQMIQLSLDGKRLYVTN 98 (167)
Q Consensus 78 ~~g~P~~~~LS~DGkrLyVaN 98 (167)
+.+|=.-++.|||+..|.+++
T Consensus 119 vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVT 139 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEe
Confidence 344578899999999999998
No 260
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=27.10 E-value=2.6e+02 Score=24.88 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=43.8
Q ss_pred EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecC-CceeEeeC
Q 031020 7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVTD 61 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~-~~v~v~~~ 61 (167)
.|.+.|-+-+||+|-...|.-.--.++|.+....++-..++|.+.-. +.|+|+.-
T Consensus 110 ~V~L~M~dG~LyA~~~~kg~A~g~A~~dA~~GedV~it~i~G~Id~e~G~v~i~~v 165 (260)
T COG1497 110 TVYLRMKDGYLYASRSAKGGATGVALTDAEKGEDVGITEIGGMIDVEKGEVTIVKV 165 (260)
T ss_pred EEEEEecCcEEEEeccCCCcceeEEecccccCCeeeeeeccCcccCCCCeEEEEEC
Confidence 57889999999999998885555556667788999999999988655 77777754
No 261
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=26.42 E-value=2.5e+02 Score=25.68 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.6
Q ss_pred ceEEEccCCCEEEEEe
Q 031020 83 QMIQLSLDGKRLYVTN 98 (167)
Q Consensus 83 ~~~~LS~DGkrLyVaN 98 (167)
.-+++|.-|.+|.|+.
T Consensus 137 kVy~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVVGT 152 (323)
T ss_pred eEEEEeccCCEEEEee
Confidence 3577888899999955
No 262
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=26.01 E-value=2.5e+02 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=22.3
Q ss_pred EEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020 8 FLISLDDRFLYFSNWLHGDIRQYNIEDP 35 (167)
Q Consensus 8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp 35 (167)
.++..|+..|--+.-.++.|.+|||..+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeeccc
Confidence 6788899888555555899999999863
No 263
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=25.94 E-value=5.4e+02 Score=23.87 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 33 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIs 33 (167)
++-+-.|.+.-.-.+||++-=.. -||+|+..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Ae 237 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDV-GIWRYDAE 237 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTT-EEEEEESS
T ss_pred CCcceEEEEecccCCEEEecCcc-EEEEEecC
Confidence 45567788888888999998654 78999866
No 264
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=25.93 E-value=2.2e+02 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=9.3
Q ss_pred CCEEEEEeCCCCcEEEEec
Q 031020 14 DRFLYFSNWLHGDIRQYNI 32 (167)
Q Consensus 14 dRfLYVSnw~hg~I~qyDI 32 (167)
+..||+.+ ..|.+..+|.
T Consensus 120 ~~~v~v~~-~~g~l~ald~ 137 (394)
T PRK11138 120 GGKVYIGS-EKGQVYALNA 137 (394)
T ss_pred CCEEEEEc-CCCEEEEEEC
Confidence 44556654 2445555553
No 265
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.81 E-value=1.8e+02 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=29.0
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
..|.+|...|+.-.|-+|+--+-+|+.|+|+.
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 35778999999999999999999999999996
No 266
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=25.71 E-value=2.2e+02 Score=27.24 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=24.6
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd 34 (167)
|-++..||+| |...++-.++.+++||+.-
T Consensus 348 I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 348 ILSVAFSPNG-YHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred eeeEeECCCc-eEEeecCCCCcEEEeeecc
Confidence 4578999999 5668888999999999874
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=25.63 E-value=2.5e+02 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=24.7
Q ss_pred eeEEEEecCCCEEEEEeCC--CCcEEEEecc
Q 031020 5 ITDFLISLDDRFLYFSNWL--HGDIRQYNIE 33 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~--hg~I~qyDIs 33 (167)
+..+-.||-|||+-|.+=. .|++.-||.+
T Consensus 495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred cceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 4567899999999998876 7899999976
No 268
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.45 E-value=1.5e+02 Score=30.41 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020 4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 35 (167)
Q Consensus 4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp 35 (167)
.+-||+.-|||..|.++. .+.+..||.+|-
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG 43 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG 43 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCc
Confidence 356899999999999996 678999999873
No 269
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.19 E-value=91 Score=29.87 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=24.8
Q ss_pred eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCe
Q 031020 5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV 39 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pk 39 (167)
+..+++|+|+|||-.+.++ .-|.+|++.+-.+.+
T Consensus 205 il~~avS~Dgkylatgg~d-~~v~Iw~~~t~ehv~ 238 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRD-RHVQIWDCDTLEHVK 238 (479)
T ss_pred eEEEEEcCCCcEEEecCCC-ceEEEecCcccchhh
Confidence 4578999999999666553 467799988644433
No 270
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=25.13 E-value=75 Score=30.06 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=44.8
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
-|++-|+|++|| +|..+.+++++||+.. |++-.++.=++.-. ....|-|...+|.-...---|+-+
T Consensus 127 ydL~Ws~d~~~l-~s~s~dns~~l~Dv~~-------G~l~~~~~dh~~yv------qgvawDpl~qyv~s~s~dr~~~~~ 192 (434)
T KOG1009|consen 127 YDLAWSPDSNFL-VSGSVDNSVRLWDVHA-------GQLLAILDDHEHYV------QGVAWDPLNQYVASKSSDRHPEGF 192 (434)
T ss_pred hhhhccCCCcee-eeeeccceEEEEEecc-------ceeEeecccccccc------ceeecchhhhhhhhhccCccccee
Confidence 467789999999 5666899999999874 44444331111000 112233444443322211127778
Q ss_pred EEccCCCEEEEE
Q 031020 86 QLSLDGKRLYVT 97 (167)
Q Consensus 86 ~LS~DGkrLyVa 97 (167)
++..++.--++.
T Consensus 193 ~~~~~~~~~~~~ 204 (434)
T KOG1009|consen 193 SAKLKQVIKRHG 204 (434)
T ss_pred eeeeeeeeeeee
Confidence 887777766666
No 271
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=24.98 E-value=1.7e+02 Score=30.24 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred eeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020 5 ITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 83 (167)
Q Consensus 5 ~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~ 83 (167)
+|.+++|++||||-.---+| -.+.+|++.- +-.+...- +..++-.
T Consensus 81 ~t~vAfS~~GryvatGEcG~~pa~kVw~la~---h~vVAEfv-------------------------------dHKY~vt 126 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGECGRTPASKVWSLAF---HGVVAEFV-------------------------------DHKYNVT 126 (1080)
T ss_pred eeEEEEcCCCcEEEecccCCCccceeeeecc---ccchhhhh-------------------------------hccccce
Q ss_pred eEEEccCCCEEE--------EEe
Q 031020 84 MIQLSLDGKRLY--------VTN 98 (167)
Q Consensus 84 ~~~LS~DGkrLy--------VaN 98 (167)
-.++||-+|+|. +-|
T Consensus 127 cvaFsp~~kyvvSVGsQHDMIVn 149 (1080)
T KOG1408|consen 127 CVAFSPGNKYVVSVGSQHDMIVN 149 (1080)
T ss_pred eeeecCCCcEEEeeccccceEEE
No 272
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=24.48 E-value=3.9e+02 Score=24.66 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=37.8
Q ss_pred eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020 6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 85 (167)
Q Consensus 6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~ 85 (167)
-|++.++||.--|-..| .+.|-..| |.+.+. .++++|. |.+ |..+
T Consensus 65 ~dvapapdG~VWft~qg-~gaiGhLd---P~tGev-~~ypLg~--------------------------Ga~----Phgi 109 (353)
T COG4257 65 FDVAPAPDGAVWFTAQG-TGAIGHLD---PATGEV-ETYPLGS--------------------------GAS----PHGI 109 (353)
T ss_pred cccccCCCCceEEecCc-cccceecC---CCCCce-EEEecCC--------------------------CCC----CceE
Confidence 36677788866555554 55777666 555543 4677765 556 9999
Q ss_pred EEccCCCEEEEEe
Q 031020 86 QLSLDGKRLYVTN 98 (167)
Q Consensus 86 ~LS~DGkrLyVaN 98 (167)
++-|||. +++|.
T Consensus 110 v~gpdg~-~Witd 121 (353)
T COG4257 110 VVGPDGS-AWITD 121 (353)
T ss_pred EECCCCC-eeEec
Confidence 9999997 34444
No 273
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=24.47 E-value=1e+02 Score=23.56 Aligned_cols=24 Identities=8% Similarity=0.175 Sum_probs=20.7
Q ss_pred CCceeEEEEecCCCEEEEEeCCCC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHG 25 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg 25 (167)
.+++|-|.++++|+-||.+.+.+.
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~ 102 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPP 102 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCC
Confidence 578999999999999999977643
No 274
>PRK13239 alkylmercury lyase; Provisional
Probab=24.27 E-value=1.7e+02 Score=24.84 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=36.2
Q ss_pred CCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe---eecCceeEe
Q 031020 79 RGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM---AINPNFFVD 140 (167)
Q Consensus 79 ~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l---~l~~~F~vD 140 (167)
...|-...+..||++||.-+ +||.=.+|.+.... +..--.++.+|.. +++++-.++
T Consensus 77 S~~pT~H~v~v~Gr~lyt~C----A~DALg~~a~lg~~--a~I~S~cp~tG~~I~ltv~~~~v~~ 135 (206)
T PRK13239 77 TLRPTPHRFEVDGRQLYTWC----ALDTLIFPALIGRT--ARVESHCPATGAPVRLTVTPSGVTA 135 (206)
T ss_pred cCCCcCcEEEECCEEEEeeh----HHHHhhhHHHcCCC--eEEEecCCCCCCeEEEEEcCCceee
Confidence 33355556666999999987 69999999998533 3323444456643 445555544
No 275
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=24.17 E-value=3.3e+02 Score=25.41 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCceeEEEEecC-CCEEEEEeCCCCcEEEEeccC
Q 031020 2 PGLITDFLISLD-DRFLYFSNWLHGDIRQYNIED 34 (167)
Q Consensus 2 p~l~tdI~IS~D-dRfLYVSnw~hg~I~qyDIsd 34 (167)
|+.+.+|+++-+ .-.+-.||--.|.|+.|||.-
T Consensus 70 ~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 70 PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred CCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence 566777777664 566667777899999999864
No 276
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=23.73 E-value=4e+02 Score=22.95 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=24.9
Q ss_pred EecCCCEEEEEe-CCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020 10 ISLDDRFLYFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGG 48 (167)
Q Consensus 10 IS~DdRfLYVSn-w~hg~I~qyDIsdp~~pklvg~v~~GG 48 (167)
.+.+.++||+-| .....|.+||+.+ .+++.+++..-
T Consensus 51 ~~~~~~yL~f~n~~~~~~i~~~Dl~~---~~l~~~i~~ek 87 (333)
T PF13970_consen 51 SSDGKKYLYFLNNYKSHSIDIYDLDS---GKLVKKIPFEK 87 (333)
T ss_dssp EETTEEEEEEEE-ST--EEEEEETTT---TEEEEEEE-BS
T ss_pred EcCCcEEEEEEcCCCcceEEEEECCC---Cceeeeeeeee
Confidence 566667776666 3336999999876 89999998754
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=23.59 E-value=2.5e+02 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=26.1
Q ss_pred EEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEE
Q 031020 7 DFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIW 45 (167)
Q Consensus 7 dI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~ 45 (167)
.|.+||-.|++-++..+ .|+|-.||..+ +-+.+|.+-
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~--rf~~~~~~~ 358 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAG--RFKVAGAFN 358 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCC--ceEEEEEee
Confidence 36789999999998874 69999888432 233444443
No 278
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=23.16 E-value=5.9e+02 Score=23.38 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred CceeEEEEec----CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE
Q 031020 3 GLITDFLISL----DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 45 (167)
Q Consensus 3 ~l~tdI~IS~----DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~ 45 (167)
...+.+.++. +..+|++-|+ ++.+++||+.. .+++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~-D~~LRiW~l~t---~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSR-DHTLRIWSLET---GQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEET-TSEEEEEETTT---TCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeC-CCeEEEEECCC---CeEEEEec
Confidence 3457778888 9999999997 55999999875 44444433
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.69 E-value=1.7e+02 Score=28.56 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCceeEEEEecCCCEEEEEeCCCCcEEEEeccC-------CCCCeEEEEEEeC
Q 031020 2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIED-------PKNPVLTGQIWVG 47 (167)
Q Consensus 2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-------p~~pklvg~v~~G 47 (167)
+...+-|.||+|++.|-++. ..|-+|||.+ ++|+..+..+..+
T Consensus 144 ~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEE
No 280
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=6e+02 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=35.1
Q ss_pred CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCcee
Q 031020 3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLF 50 (167)
Q Consensus 3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~ 50 (167)
++...|.+++-|.+| +|....|.|++|.|.. .+-+-++.+.+.+
T Consensus 401 g~Vr~iSvdp~G~wl-asGsdDGtvriWEi~T---gRcvr~~~~d~~I 444 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWL-ASGSDDGTVRIWEIAT---GRCVRTVQFDSEI 444 (733)
T ss_pred CeEEEEEecCCccee-eecCCCCcEEEEEeec---ceEEEEEeeccee
Confidence 456788899988887 8999999999999874 6666677777744
No 281
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=22.17 E-value=6.1e+02 Score=23.16 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020 8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 87 (167)
Q Consensus 8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L 87 (167)
|+-||.||+|-.+.+ ...+..|.=.| ....=.--+.| ++.| -.-++.
T Consensus 67 vAwsp~g~~La~aSF-D~t~~Iw~k~~---~efecv~~lEG-----------HEnE------------------VK~Vaw 113 (312)
T KOG0645|consen 67 VAWSPHGRYLASASF-DATVVIWKKED---GEFECVATLEG-----------HENE------------------VKCVAW 113 (312)
T ss_pred eeecCCCcEEEEeec-cceEEEeecCC---CceeEEeeeec-----------cccc------------------eeEEEE
Q ss_pred ccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCC
Q 031020 88 SLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE 127 (167)
Q Consensus 88 S~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~ 127 (167)
|.+|.+|-.+.. .++.++.++|-|.|
T Consensus 114 s~sG~~LATCSR--------------DKSVWiWe~deddE 139 (312)
T KOG0645|consen 114 SASGNYLATCSR--------------DKSVWIWEIDEDDE 139 (312)
T ss_pred cCCCCEEEEeeC--------------CCeEEEEEecCCCc
No 282
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=21.48 E-value=3.5e+02 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.6
Q ss_pred CceEEEccCCCEEEEEeC
Q 031020 82 PQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNs 99 (167)
---..-|||||.+..|.+
T Consensus 94 ls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSE 111 (447)
T ss_pred ceeeeECCCcceEeeeec
Confidence 345668999999999984
No 283
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=1.7e+02 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.0
Q ss_pred CceEEEccCCCEEEEEeC
Q 031020 82 PQMIQLSLDGKRLYVTNS 99 (167)
Q Consensus 82 P~~~~LS~DGkrLyVaNs 99 (167)
||.++-||.||.+.|++.
T Consensus 354 Pq~L~hsPNGrfV~Vcgd 371 (794)
T KOG0276|consen 354 PQTLAHSPNGRFVVVCGD 371 (794)
T ss_pred hHHhccCCCCcEEEEecC
Confidence 999999999999888773
No 284
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.56 E-value=2.1e+02 Score=22.40 Aligned_cols=40 Identities=33% Similarity=0.732 Sum_probs=30.1
Q ss_pred eEEE-ccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe-eec
Q 031020 84 MIQL-SLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM-AIN 134 (167)
Q Consensus 84 ~~~L-S~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l-~l~ 134 (167)
++-| -.||--+|++-+-|..|.+. + +.|||=+--|+| .|+
T Consensus 55 DvlLG~i~gvPvyIs~~QyeaWKHT----------q-LIIDVVpGRGGmFSLd 96 (116)
T COG3564 55 DVLLGEIDGVPVYISGPQYEAWKHT----------Q-LIIDVVPGRGGMFSLD 96 (116)
T ss_pred ceEEeeeCCEEEEecCcHHhhhhcc----------E-EEEEEecCCCceeEcc
Confidence 4443 45889999999999999876 2 448887788887 555
Done!