BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031021
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k
          Length = 226

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 3   TQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAA 62
           T + A+IL+KAL  +P  DF+LC   I +  Q E   + ++ L   LET  F+ FW    
Sbjct: 63  TTVTAQILLKALTNLPHTDFTLCKCXIDQAHQEERPIRQILYLGDLLETCHFQAFWQALD 122

Query: 63  KHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 122
           ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW
Sbjct: 123 ENXDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEXL---GDLSDSQLKVWXSKYGW 179

Query: 123 ILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 162
               D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct: 180 --SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,559,918
Number of Sequences: 62578
Number of extensions: 165629
Number of successful extensions: 491
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 3
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)