Query 031021
Match_columns 167
No_of_seqs 102 out of 182
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 100.0 2E-45 6.9E-50 297.7 9.7 155 1-165 61-216 (226)
2 4b0z_A RPN12, 26S proteasome r 99.3 1.3E-11 4.6E-16 99.3 11.8 125 5-138 99-228 (229)
3 4b4t_T 26S proteasome regulato 99.1 3.8E-10 1.3E-14 93.1 11.4 119 4-126 104-230 (274)
4 3t5v_A Nuclear mRNA export pro 98.2 6.3E-06 2.2E-10 69.2 9.7 107 16-126 126-255 (316)
5 4b4t_R RPN7, 26S proteasome re 98.0 3.8E-05 1.3E-09 66.2 10.9 128 4-136 248-390 (429)
6 3txn_A 26S proteasome regulato 97.5 0.0011 3.8E-08 57.0 12.4 128 4-137 221-360 (394)
7 1ufm_A COP9 complex subunit 4; 96.9 0.0027 9.4E-08 43.1 6.7 49 71-119 9-57 (84)
8 4b4t_Q 26S proteasome regulato 96.5 0.03 1E-06 45.7 11.5 85 35-119 292-383 (434)
9 4b4t_P 26S proteasome regulato 96.1 0.058 2E-06 46.5 11.4 100 37-140 291-406 (445)
10 4b4t_S RPN3, 26S proteasome re 91.5 0.67 2.3E-05 41.2 8.2 103 38-141 341-450 (523)
11 4b4t_O 26S proteasome regulato 91.0 1.5 5.3E-05 36.9 9.8 113 6-118 214-333 (393)
12 2heo_A Z-DNA binding protein 1 89.4 0.74 2.5E-05 29.1 5.1 48 76-124 9-56 (67)
13 2htj_A P fimbrial regulatory p 88.0 2.5 8.5E-05 27.2 7.0 44 79-124 2-45 (81)
14 3t5x_A PCI domain-containing p 78.3 16 0.00055 27.9 9.1 78 42-119 83-174 (203)
15 3dkw_A DNR protein; CRP-FNR, H 77.8 8.2 0.00028 28.4 7.2 34 91-125 177-210 (227)
16 3rkx_A Biotin-[acetyl-COA-carb 75.2 9.3 0.00032 31.4 7.3 61 77-138 3-64 (323)
17 3dv8_A Transcriptional regulat 73.5 12 0.0004 27.4 7.0 33 92-125 169-201 (220)
18 3e97_A Transcriptional regulat 72.5 15 0.0005 27.2 7.4 34 91-125 174-207 (231)
19 3jth_A Transcription activator 72.2 7 0.00024 25.6 4.9 52 71-125 17-68 (98)
20 2fmy_A COOA, carbon monoxide o 71.6 8.1 0.00028 28.5 5.7 34 91-125 166-199 (220)
21 3ryp_A Catabolite gene activat 71.6 15 0.00051 26.6 7.1 33 92-125 167-199 (210)
22 1y0u_A Arsenical resistance op 71.3 4.2 0.00014 26.8 3.6 51 72-126 26-76 (96)
23 3pqk_A Biofilm growth-associat 71.1 13 0.00045 24.4 6.2 54 69-125 15-68 (102)
24 2oqg_A Possible transcriptiona 70.8 4.2 0.00014 27.3 3.6 50 73-125 17-66 (114)
25 2lnb_A Z-DNA-binding protein 1 70.7 15 0.00053 24.3 6.1 49 72-121 14-62 (80)
26 3cuo_A Uncharacterized HTH-typ 70.2 9 0.00031 24.7 5.1 49 75-125 22-70 (99)
27 1u2w_A CADC repressor, cadmium 69.7 13 0.00046 25.5 6.2 53 71-125 36-88 (122)
28 2y75_A HTH-type transcriptiona 69.7 12 0.0004 25.9 5.9 43 82-125 14-58 (129)
29 1r1u_A CZRA, repressor protein 69.3 4.9 0.00017 27.0 3.7 49 74-125 23-71 (106)
30 3e6c_C CPRK, cyclic nucleotide 68.6 25 0.00085 26.4 8.0 51 74-125 149-209 (250)
31 4ev0_A Transcription regulator 68.1 18 0.00063 26.2 7.0 35 90-125 161-195 (216)
32 3iwz_A CAP-like, catabolite ac 67.8 21 0.00071 26.2 7.3 33 92-125 187-219 (230)
33 1ub9_A Hypothetical protein PH 67.6 10 0.00036 24.4 5.0 51 72-124 11-61 (100)
34 2gau_A Transcriptional regulat 67.0 22 0.00077 26.2 7.4 34 91-125 179-212 (232)
35 2jt1_A PEFI protein; solution 67.0 13 0.00045 24.1 5.3 45 79-125 6-56 (77)
36 1ft9_A Carbon monoxide oxidati 65.6 14 0.00047 27.3 5.9 33 92-125 163-195 (222)
37 3la7_A Global nitrogen regulat 65.5 27 0.00093 26.2 7.7 52 73-125 164-225 (243)
38 3f6o_A Probable transcriptiona 64.3 9.6 0.00033 26.1 4.4 54 69-125 10-63 (118)
39 2kko_A Possible transcriptiona 63.5 5.4 0.00018 27.0 2.9 52 71-125 19-70 (108)
40 2oz6_A Virulence factor regula 62.9 13 0.00044 26.9 5.2 34 91-125 163-196 (207)
41 2zcw_A TTHA1359, transcription 62.7 17 0.00059 26.3 5.9 34 91-125 145-178 (202)
42 2cfx_A HTH-type transcriptiona 62.4 14 0.00047 26.1 5.1 47 76-124 4-50 (144)
43 1uly_A Hypothetical protein PH 62.0 11 0.00038 28.5 4.7 52 71-125 14-65 (192)
44 2jsc_A Transcriptional regulat 61.7 14 0.00047 25.3 4.9 52 71-125 15-66 (118)
45 3kcc_A Catabolite gene activat 61.7 26 0.00089 26.7 7.0 33 92-125 217-249 (260)
46 2bgc_A PRFA; bacterial infecti 61.4 17 0.00058 27.2 5.8 33 92-125 169-202 (238)
47 1xn7_A Hypothetical protein YH 60.8 18 0.00061 23.5 5.0 41 82-124 7-47 (78)
48 3d0s_A Transcriptional regulat 60.3 31 0.0011 25.3 7.0 33 92-125 177-209 (227)
49 1r1t_A Transcriptional repress 59.9 14 0.00049 25.6 4.7 49 74-125 43-91 (122)
50 2b0l_A GTP-sensing transcripti 59.7 12 0.00041 25.4 4.2 59 78-138 29-88 (102)
51 2dbb_A Putative HTH-type trans 59.6 14 0.00048 26.1 4.7 47 76-124 8-54 (151)
52 1qbj_A Protein (double-strande 59.5 33 0.0011 22.3 8.2 49 75-125 8-59 (81)
53 2d1h_A ST1889, 109AA long hypo 59.2 21 0.00073 22.9 5.4 46 78-125 23-68 (109)
54 2w25_A Probable transcriptiona 59.1 18 0.00061 25.6 5.2 47 76-124 6-52 (150)
55 2pn6_A ST1022, 150AA long hypo 58.0 15 0.00053 25.8 4.8 47 76-124 2-48 (150)
56 2k02_A Ferrous iron transport 57.0 20 0.00067 24.0 4.8 41 82-124 7-47 (87)
57 2cg4_A Regulatory protein ASNC 57.0 17 0.00057 25.8 4.8 47 76-124 7-53 (152)
58 2qvo_A Uncharacterized protein 56.5 30 0.001 22.4 5.7 32 93-125 31-62 (95)
59 3f6v_A Possible transcriptiona 55.5 13 0.00044 27.0 4.0 54 69-125 50-103 (151)
60 1sfx_A Conserved hypothetical 55.1 30 0.001 22.1 5.5 46 78-125 21-66 (109)
61 2gxg_A 146AA long hypothetical 55.0 22 0.00076 24.2 5.1 45 78-125 38-82 (146)
62 3fx3_A Cyclic nucleotide-bindi 54.9 23 0.00078 26.2 5.5 30 93-123 179-208 (237)
63 2lkp_A Transcriptional regulat 53.8 16 0.00055 24.6 4.1 46 77-125 32-77 (119)
64 2hr3_A Probable transcriptiona 53.3 29 0.001 23.6 5.5 47 78-125 36-82 (147)
65 2cyy_A Putative HTH-type trans 52.6 22 0.00075 25.1 4.8 47 76-124 6-52 (151)
66 3b02_A Transcriptional regulat 52.3 10 0.00036 27.4 3.1 34 91-125 138-171 (195)
67 3tqn_A Transcriptional regulat 52.3 37 0.0013 23.0 5.8 60 76-138 12-76 (113)
68 1q1h_A TFE, transcription fact 51.4 8.5 0.00029 25.8 2.3 48 77-125 18-65 (110)
69 2fbh_A Transcriptional regulat 51.3 31 0.0011 23.4 5.3 46 79-125 39-84 (146)
70 3kp7_A Transcriptional regulat 50.8 29 0.001 23.9 5.2 43 79-124 40-82 (151)
71 2ia0_A Putative HTH-type trans 50.0 27 0.00091 25.6 5.0 49 74-124 14-62 (171)
72 1oyi_A Double-stranded RNA-bin 49.0 24 0.00082 23.4 4.1 46 77-125 17-62 (82)
73 1tc3_C Protein (TC3 transposas 49.0 30 0.001 18.6 4.2 35 78-115 10-44 (51)
74 1zyb_A Transcription regulator 48.8 15 0.00052 27.4 3.6 34 91-125 185-218 (232)
75 2p5v_A Transcriptional regulat 48.5 29 0.001 24.8 5.0 47 76-124 9-55 (162)
76 2krk_A 26S protease regulatory 47.5 19 0.00065 23.5 3.5 39 78-116 15-57 (86)
77 3e21_A HFAF1, FAS-associated f 46.5 23 0.00077 20.8 3.3 28 95-126 9-37 (45)
78 3oop_A LIN2960 protein; protei 45.4 43 0.0015 22.7 5.3 45 78-124 38-82 (143)
79 3by6_A Predicted transcription 44.9 41 0.0014 23.4 5.1 59 76-137 14-77 (126)
80 1g2h_A Transcriptional regulat 44.2 44 0.0015 20.1 4.6 37 78-121 22-58 (61)
81 1r7j_A Conserved hypothetical 44.2 57 0.0019 21.5 5.6 43 80-126 11-53 (95)
82 3t8r_A Staphylococcus aureus C 44.2 60 0.002 23.0 6.1 47 92-140 28-74 (143)
83 2e1c_A Putative HTH-type trans 43.9 38 0.0013 24.8 5.0 48 75-124 25-72 (171)
84 2ek5_A Predicted transcription 43.3 47 0.0016 23.2 5.3 45 91-138 26-71 (129)
85 3kw6_A 26S protease regulatory 42.8 38 0.0013 21.2 4.3 39 78-116 7-49 (78)
86 1v4r_A Transcriptional repress 42.8 13 0.00044 24.7 2.1 62 74-138 16-78 (102)
87 2di3_A Bacterial regulatory pr 42.5 43 0.0015 25.4 5.4 61 75-140 10-77 (239)
88 3k69_A Putative transcription 42.3 61 0.0021 23.6 5.9 49 91-141 27-75 (162)
89 3c57_A Two component transcrip 42.1 41 0.0014 22.0 4.5 55 65-123 19-73 (95)
90 1i1g_A Transcriptional regulat 41.7 31 0.0011 23.7 4.1 45 78-124 5-49 (141)
91 3deu_A Transcriptional regulat 41.5 44 0.0015 23.8 5.0 47 78-125 54-100 (166)
92 3lsg_A Two-component response 41.2 56 0.0019 21.2 5.2 35 81-115 6-42 (103)
93 1ku9_A Hypothetical protein MJ 40.8 49 0.0017 22.3 5.0 46 79-125 28-73 (152)
94 2fa5_A Transcriptional regulat 40.7 60 0.002 22.4 5.6 44 80-125 52-95 (162)
95 3neu_A LIN1836 protein; struct 40.5 65 0.0022 22.1 5.6 60 75-137 15-79 (125)
96 3c7j_A Transcriptional regulat 39.5 46 0.0016 25.5 5.1 62 74-138 31-92 (237)
97 3bdd_A Regulatory protein MARR 39.4 67 0.0023 21.4 5.5 45 79-125 33-77 (142)
98 3bpv_A Transcriptional regulat 39.0 64 0.0022 21.5 5.4 45 79-125 31-75 (138)
99 3bwg_A Uncharacterized HTH-typ 38.2 1.1E+02 0.0039 23.2 7.2 61 75-141 11-75 (239)
100 1qgp_A Protein (double strande 38.2 75 0.0026 20.1 8.1 48 77-125 14-63 (77)
101 2p4w_A Transcriptional regulat 38.1 39 0.0013 25.6 4.4 53 70-125 8-60 (202)
102 3mn2_A Probable ARAC family tr 38.0 79 0.0027 20.6 5.6 26 90-115 16-41 (108)
103 2a61_A Transcriptional regulat 37.8 72 0.0025 21.4 5.5 45 79-125 35-79 (145)
104 3fm5_A Transcriptional regulat 37.1 55 0.0019 22.4 4.8 47 78-125 40-86 (150)
105 2h09_A Transcriptional regulat 36.8 1E+02 0.0035 21.3 6.3 44 80-125 43-86 (155)
106 1z05_A Transcriptional regulat 36.3 68 0.0023 26.6 6.0 49 75-125 37-85 (429)
107 3boq_A Transcriptional regulat 36.1 40 0.0014 23.4 3.9 47 78-125 48-94 (160)
108 3k2z_A LEXA repressor; winged 35.9 98 0.0034 22.7 6.3 48 77-125 9-56 (196)
109 2hoe_A N-acetylglucosamine kin 35.7 20 0.0007 29.4 2.6 46 77-125 20-65 (380)
110 1s3j_A YUSO protein; structura 35.6 62 0.0021 22.1 4.9 45 79-125 39-83 (155)
111 3aji_B S6C, proteasome (prosom 35.5 46 0.0016 21.0 3.9 40 78-117 5-48 (83)
112 3sxy_A Transcriptional regulat 35.4 61 0.0021 24.2 5.1 61 75-138 18-78 (218)
113 3b73_A PHIH1 repressor-like pr 35.3 50 0.0017 22.7 4.3 53 71-125 7-61 (111)
114 2rdp_A Putative transcriptiona 35.3 83 0.0028 21.3 5.5 45 79-125 44-88 (150)
115 3ihu_A Transcriptional regulat 34.7 85 0.0029 23.4 5.9 61 75-138 22-82 (222)
116 2hs5_A Putative transcriptiona 34.6 82 0.0028 24.0 5.9 58 75-138 34-94 (239)
117 4hbl_A Transcriptional regulat 34.4 64 0.0022 22.1 4.8 46 78-125 42-87 (149)
118 3k9o_A Ubiquitin-conjugating e 34.0 35 0.0012 25.8 3.5 93 23-125 91-192 (201)
119 1z6r_A MLC protein; transcript 33.7 63 0.0021 26.5 5.3 48 76-125 15-62 (406)
120 1j5y_A Transcriptional regulat 33.6 67 0.0023 23.6 5.0 46 79-125 23-68 (187)
121 1ylf_A RRF2 family protein; st 33.6 61 0.0021 22.9 4.6 47 91-140 29-75 (149)
122 3bro_A Transcriptional regulat 33.4 96 0.0033 20.6 5.5 46 79-125 36-82 (141)
123 2nnn_A Probable transcriptiona 32.9 95 0.0033 20.6 5.4 45 79-125 40-84 (140)
124 4aik_A Transcriptional regulat 32.8 74 0.0025 22.3 5.0 44 80-124 34-77 (151)
125 3vlf_B 26S protease regulatory 32.8 67 0.0023 20.7 4.4 38 79-116 6-47 (88)
126 2fu4_A Ferric uptake regulatio 32.7 89 0.003 19.3 5.9 48 77-125 17-70 (83)
127 3bja_A Transcriptional regulat 32.6 71 0.0024 21.2 4.7 46 78-125 34-79 (139)
128 2fbi_A Probable transcriptiona 32.3 84 0.0029 20.9 5.1 44 80-125 39-82 (142)
129 2nyx_A Probable transcriptiona 32.3 78 0.0027 22.2 5.1 45 79-125 47-91 (168)
130 1jgs_A Multiple antibiotic res 32.1 1E+02 0.0035 20.4 5.5 45 79-125 36-80 (138)
131 2k9s_A Arabinose operon regula 32.0 78 0.0027 20.6 4.7 34 82-115 8-43 (107)
132 1j9i_A GPNU1 DBD;, terminase s 32.0 23 0.00077 21.8 1.8 21 93-113 3-23 (68)
133 1xd7_A YWNA; structural genomi 31.9 77 0.0026 22.3 4.9 51 86-140 18-68 (145)
134 3oio_A Transcriptional regulat 31.6 71 0.0024 21.1 4.5 38 84-124 14-52 (113)
135 1hw1_A FADR, fatty acid metabo 31.6 68 0.0023 24.1 4.9 44 91-137 29-73 (239)
136 2qww_A Transcriptional regulat 31.5 83 0.0028 21.4 5.0 45 79-125 43-87 (154)
137 3tgn_A ADC operon repressor AD 31.5 71 0.0024 21.5 4.6 45 78-125 39-83 (146)
138 3s2w_A Transcriptional regulat 31.4 71 0.0024 22.1 4.7 42 81-124 54-95 (159)
139 3bj6_A Transcriptional regulat 31.3 92 0.0031 21.1 5.2 45 79-125 42-86 (152)
140 3nau_A Zinc fingers and homeob 31.3 40 0.0014 21.4 2.9 22 94-115 33-54 (66)
141 2pg4_A Uncharacterized protein 31.3 1E+02 0.0035 19.6 5.6 32 92-124 30-62 (95)
142 2pex_A Transcriptional regulat 31.2 92 0.0032 21.2 5.2 45 79-125 49-93 (153)
143 3eco_A MEPR; mutlidrug efflux 30.8 91 0.0031 20.8 5.1 46 78-124 32-78 (139)
144 3mkl_A HTH-type transcriptiona 30.6 68 0.0023 21.5 4.3 39 82-124 12-51 (120)
145 3ulq_B Transcriptional regulat 30.4 91 0.0031 20.2 4.8 33 90-122 42-74 (90)
146 3ech_A MEXR, multidrug resista 30.4 95 0.0033 20.9 5.1 44 80-125 40-83 (142)
147 2hzt_A Putative HTH-type trans 30.3 92 0.0031 20.5 4.9 48 75-125 12-60 (107)
148 1xmk_A Double-stranded RNA-spe 30.2 1.1E+02 0.0038 19.7 5.0 46 77-124 11-57 (79)
149 3k0l_A Repressor protein; heli 30.1 1E+02 0.0035 21.3 5.4 44 79-124 48-91 (162)
150 2jpc_A SSRB; DNA binding prote 30.0 75 0.0026 18.3 4.0 34 90-123 11-44 (61)
151 2qq9_A Diphtheria toxin repres 29.9 1.1E+02 0.0036 23.2 5.7 31 94-125 26-56 (226)
152 1z7u_A Hypothetical protein EF 29.7 1.1E+02 0.0037 20.3 5.2 47 76-125 21-68 (112)
153 3eet_A Putative GNTR-family tr 29.6 1.4E+02 0.0046 23.4 6.5 63 75-140 31-98 (272)
154 3i4p_A Transcriptional regulat 29.6 75 0.0026 22.7 4.6 46 76-123 2-47 (162)
155 3r0a_A Putative transcriptiona 29.6 1.1E+02 0.0038 20.7 5.3 46 78-124 27-73 (123)
156 1us7_B HSP90 CO-chaperone CDC3 29.3 80 0.0027 25.4 5.0 48 38-85 102-157 (265)
157 3e6m_A MARR family transcripti 29.3 88 0.003 21.7 4.9 45 79-125 55-99 (161)
158 3u2r_A Regulatory protein MARR 29.1 86 0.0029 21.9 4.8 45 79-124 48-93 (168)
159 3oou_A LIN2118 protein; protei 29.0 1.1E+02 0.0039 19.8 5.2 25 91-115 20-44 (108)
160 1o5l_A Transcriptional regulat 28.7 12 0.00041 27.6 0.0 33 91-124 163-195 (213)
161 3t5v_B Nuclear mRNA export pro 28.6 2.8E+02 0.0095 23.7 9.8 83 37-119 293-410 (455)
162 3nqo_A MARR-family transcripti 28.2 1.1E+02 0.0039 22.0 5.5 47 78-125 42-89 (189)
163 2x4h_A Hypothetical protein SS 28.1 1E+02 0.0035 20.8 4.9 36 89-125 28-63 (139)
164 1lj9_A Transcriptional regulat 28.0 1.1E+02 0.0036 20.5 5.0 44 80-125 32-75 (144)
165 2bv6_A MGRA, HTH-type transcri 27.9 94 0.0032 20.8 4.7 45 79-125 39-83 (142)
166 3lwf_A LIN1550 protein, putati 27.4 1.8E+02 0.006 21.0 8.1 48 92-141 44-91 (159)
167 2frh_A SARA, staphylococcal ac 27.4 76 0.0026 21.4 4.1 45 79-125 39-85 (127)
168 3e46_A Ubiquitin-conjugating e 27.3 52 0.0018 26.1 3.6 95 23-125 143-244 (253)
169 3jw4_A Transcriptional regulat 27.2 84 0.0029 21.4 4.4 45 79-124 43-88 (148)
170 3g3z_A NMB1585, transcriptiona 27.2 1.4E+02 0.0049 20.0 5.6 45 79-125 33-77 (145)
171 2p8t_A Hypothetical protein PH 27.0 63 0.0022 24.8 3.9 34 91-125 29-62 (200)
172 1whz_A Hypothetical protein; a 26.7 66 0.0023 19.8 3.4 19 104-126 5-23 (70)
173 2l48_A N-acetylmuramoyl-L-alan 26.5 40 0.0014 22.6 2.3 22 103-125 62-83 (85)
174 1tbx_A ORF F-93, hypothetical 26.5 90 0.0031 19.9 4.2 43 81-125 12-58 (99)
175 3f2g_A Alkylmercury lyase; MER 26.5 1.8E+02 0.0062 22.6 6.5 57 75-138 20-76 (220)
176 3cjn_A Transcriptional regulat 26.2 1.3E+02 0.0043 20.7 5.2 45 79-125 54-98 (162)
177 1bia_A BIRA bifunctional prote 26.1 1E+02 0.0036 24.7 5.3 51 78-130 6-56 (321)
178 1ng7_A Poliovirus 3A-N, genome 25.9 35 0.0012 21.4 1.8 18 104-125 29-46 (60)
179 3hsr_A HTH-type transcriptiona 25.9 64 0.0022 21.8 3.5 45 79-125 38-82 (140)
180 1p4w_A RCSB; solution structur 25.8 96 0.0033 20.6 4.3 49 71-123 32-80 (99)
181 2wv0_A YVOA, HTH-type transcri 25.1 1.9E+02 0.0063 22.1 6.4 60 76-138 13-77 (243)
182 2eth_A Transcriptional regulat 25.0 1.5E+02 0.0051 20.2 5.4 45 79-125 46-90 (154)
183 1bl0_A Protein (multiple antib 24.9 99 0.0034 20.9 4.4 25 90-114 25-49 (129)
184 1je8_A Nitrate/nitrite respons 24.9 1.3E+02 0.0045 18.8 4.8 52 68-123 16-67 (82)
185 1v92_A NSFL1 cofactor P47; 3-h 24.9 57 0.0019 18.3 2.6 26 96-125 10-35 (46)
186 1on2_A Transcriptional regulat 24.7 1.4E+02 0.0049 20.1 5.2 36 89-125 19-54 (142)
187 3cdh_A Transcriptional regulat 24.7 1.1E+02 0.0037 20.9 4.6 45 79-125 45-89 (155)
188 3nrv_A Putative transcriptiona 24.2 1.6E+02 0.0054 19.8 5.4 44 80-125 43-86 (148)
189 1wcn_A Transcription elongatio 23.8 39 0.0014 21.3 1.8 30 94-124 38-67 (70)
190 4ham_A LMO2241 protein; struct 23.3 1.8E+02 0.0063 19.9 8.1 47 91-140 36-83 (134)
191 2vn2_A DNAD, chromosome replic 23.1 1.4E+02 0.0049 20.4 4.9 31 93-124 52-82 (128)
192 1z96_A DNA-damage, UBA-domain 23.0 74 0.0025 17.1 2.7 26 95-125 8-33 (40)
193 3f3x_A Transcriptional regulat 22.6 1.5E+02 0.0051 19.8 5.0 44 79-125 39-82 (144)
194 1fse_A GERE; helix-turn-helix 22.1 1.3E+02 0.0045 17.7 4.6 48 71-122 9-56 (74)
195 2zkz_A Transcriptional repress 22.0 81 0.0028 20.5 3.3 51 71-124 21-71 (99)
196 2f2e_A PA1607; transcription f 22.0 1.8E+02 0.0063 20.2 5.5 47 76-125 23-69 (146)
197 2wte_A CSA3; antiviral protein 22.0 1.4E+02 0.0049 23.1 5.2 46 78-125 153-198 (244)
198 3zxw_B Ribulose bisphosphate c 21.8 42 0.0014 23.8 1.8 25 100-125 14-39 (118)
199 2hin_A GP39, repressor protein 21.8 76 0.0026 20.0 2.9 19 95-113 13-31 (71)
200 4b8x_A SCO5413, possible MARR- 21.6 1.4E+02 0.0048 20.6 4.7 43 81-124 39-82 (147)
201 1wi3_A DNA-binding protein SAT 21.2 79 0.0027 20.4 2.9 23 94-116 37-59 (71)
202 2fsw_A PG_0823 protein; alpha- 21.1 1.5E+02 0.0052 19.3 4.6 46 77-125 25-71 (107)
203 1rbl_M Ribulose 1,5 bisphospha 20.8 53 0.0018 22.9 2.2 25 100-125 15-40 (109)
204 1svd_M Ribulose bisphosphate c 20.7 59 0.002 22.7 2.4 25 100-125 17-42 (110)
205 1okr_A MECI, methicillin resis 20.7 1.5E+02 0.0053 19.3 4.6 45 79-125 12-60 (123)
206 1z91_A Organic hydroperoxide r 20.6 1.4E+02 0.0048 20.0 4.4 44 80-125 43-86 (147)
207 3df8_A Possible HXLR family tr 20.5 80 0.0027 21.1 3.0 54 71-125 21-75 (111)
208 1jko_C HIN recombinase, DNA-in 20.4 55 0.0019 17.8 1.9 22 92-113 21-42 (52)
209 2l0k_A Stage III sporulation p 20.3 2E+02 0.0067 19.0 5.3 38 74-113 4-41 (93)
210 3dwl_G Actin-related protein 2 20.3 2E+02 0.0068 21.1 5.3 64 43-110 41-105 (152)
211 3ke2_A Uncharacterized protein 20.1 2.3E+02 0.008 19.9 5.6 44 79-125 22-65 (117)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=100.00 E-value=2e-45 Score=297.75 Aligned_cols=155 Identities=30% Similarity=0.592 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHcCCccchhhhhcCCCccccCchhHHHHHHHHHHHHcCChHHHHHHHhhccchhhcccchHHHHHH
Q 031021 1 MSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQS 80 (167)
Q Consensus 1 ~~~~iv~~ILlKaL~~~P~~DF~lc~~Ll~~~~~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~~~~~~~i~gFed~IR~ 80 (167)
++.+++++||+||||++|++||.+|+||||++.+.+++|++++.|+++||+|+|++||+.+++++++.+.|+||+|+||+
T Consensus 61 ~~~~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~ 140 (226)
T 1rz4_A 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRK 140 (226)
T ss_dssp CCHHHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHH
T ss_pred cchhHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccHHHHHHHhc-CCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCCCCccccccccccccCCccc
Q 031021 81 FAIHVLSLTYQKIPRTVLAEAIN-LKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHI 159 (167)
Q Consensus 81 ~i~~vV~~tyqsI~~~~L~~~Lg-l~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~~N~~~~~~~i~E~i~f~~~ 159 (167)
+|+++|++||++|+++.+++||| ++++++++|+ +++||+++++ | .+ ++.|.+|+++ +|||+|+|+||++
T Consensus 141 ~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi----~~~GW~vd~~---g-~I-~~~n~e~~~k-~~~~~E~i~~~~~ 210 (226)
T 1rz4_A 141 FICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWM----SKYGWSADES---G-QI-FICSQEESIK-PKNIVEKIDFDSV 210 (226)
T ss_dssp HHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHH----HHHTCEECC------CE-ECCCHHHHTS-CCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHH----HHCCCEECCC---c-cE-EeCCCccccc-ceeeeecccHHHH
Confidence 99999999999999999999995 8889999998 6779999743 3 34 5577777766 4999999999999
Q ss_pred cccccc
Q 031021 160 TRIFPI 165 (167)
Q Consensus 160 ~~i~~~ 165 (167)
+++|+.
T Consensus 211 ~~~~~~ 216 (226)
T 1rz4_A 211 SSIMAS 216 (226)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 999997
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.32 E-value=1.3e-11 Score=99.27 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCccchhhhhcCCCccc--cCchhHHHHHHHHHHHHcCChHHHHHHHhhccc--hhhcccchHHHHHH
Q 031021 5 IVARILIKALMAMPAPDFSLCLFLIPERV--QMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRN--IVEAVPGFEQAIQS 80 (167)
Q Consensus 5 iv~~ILlKaL~~~P~~DF~lc~~Ll~~~~--~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~~~--~~~~i~gFed~IR~ 80 (167)
+++--||--|..--.+||...+..+|... +.++-|+..+.|.+.+...+|..||+.+++.+. ...-|.-|.+.+|.
T Consensus 99 ~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~ 178 (229)
T 4b0z_A 99 VTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRN 178 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 33333444454445699999999998763 568999999999999999999999999987632 23456678999999
Q ss_pred HHHHHHHHhcccccHHHHHHHhcCCc-hHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 81 FAIHVLSLTYQKIPRTVLAEAINLKG-LSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 81 ~i~~vV~~tyqsI~~~~L~~~Lgl~~-~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
.++..+..||.+|+.+.++++||+++ +++.+|+ +++||++++ +.|++|+
T Consensus 179 ~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~----~~~gw~i~d-----g~i~F~~ 228 (229)
T 4b0z_A 179 EIATCAEKVYSEIPLSNATSLLYLENTKETEKLA----EERGWDIRD-----GVIYFPK 228 (229)
T ss_dssp HHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHH----HHHTCEEET-----TEEECC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHH----HHcCCEEeC-----CEEecCC
Confidence 99999999999999999999999965 6677777 778999972 4788875
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.8e-10 Score=93.15 Aligned_cols=119 Identities=15% Similarity=0.255 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCccchhhhhcCCCcc---ccCchhHHHHHHHHHHHHcCChHHHHHHHhhccch----hhcccchHH
Q 031021 4 QIVARILIKALMAMPAPDFSLCLFLIPER---VQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNI----VEAVPGFEQ 76 (167)
Q Consensus 4 ~iv~~ILlKaL~~~P~~DF~lc~~Ll~~~---~~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~~~~----~~~i~gFed 76 (167)
.+++-=||-.|..--.+||..-+-.||.. .+.++-|+..+.|.+.|-..+|..||+.+++.+.. .--|.-|.+
T Consensus 104 e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~ 183 (274)
T 4b4t_T 104 KLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS 183 (274)
T ss_dssp HHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45555567777777789999999999864 45689999999999999999999999998875322 224556788
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCc-hHHHHHHHHHhhhcCceeec
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKG-LSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~-~~l~~~~~~~~~~~GW~~~~ 126 (167)
.||..|+..+..||.+|+.+.++++|++++ +++.+|+ +++||++++
T Consensus 184 ~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~----~~~gW~~~~ 230 (274)
T 4b4t_T 184 AIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFA----LERNWPIVN 230 (274)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHH----HHTTCCCCS
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHH----HHcCCEEeC
Confidence 999999999999999999999999999965 6788887 788999973
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.21 E-value=6.3e-06 Score=69.16 Aligned_cols=107 Identities=11% Similarity=0.180 Sum_probs=86.8
Q ss_pred cCCccchhhhhcCCCccccCchhHHHHHHHHHHHHc---------------CChHHHHHHHhhc-cch--hhcccchHHH
Q 031021 16 AMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLET---------------GRFRHFWDEAAKH-RNI--VEAVPGFEQA 77 (167)
Q Consensus 16 ~~P~~DF~lc~~Ll~~~~~~~~~i~~i~~L~~lLe~---------------c~F~~FW~~l~~~-~~~--~~~i~gFed~ 77 (167)
++-.+|+.--+-.+|+....++.|+.-+.+...+.+ .+|..||+.+++. .++ .-.+..|...
T Consensus 126 ~l~~~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~ 205 (316)
T 3t5v_A 126 KIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTD 205 (316)
T ss_dssp STTCTHHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHH
T ss_pred HhccchHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 344567777777788888889999999999888763 6799999999873 233 2346668889
Q ss_pred HHHHHHHHHHHhc----ccccHHHHHHHhcCCc-hHHHHHHHHHhhhcCceeec
Q 031021 78 IQSFAIHVLSLTY----QKIPRTVLAEAINLKG-LSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 78 IR~~i~~vV~~ty----qsI~~~~L~~~Lgl~~-~~l~~~~~~~~~~~GW~~~~ 126 (167)
+|..++..+..|| .+++.+.|+++|++++ +++.+|| +.+||++.+
T Consensus 206 vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~----~~~gl~~~~ 255 (316)
T 3t5v_A 206 IRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC----NYYSIEIIN 255 (316)
T ss_dssp HHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH----HHTTCCEET
T ss_pred HHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH----HHCCCeEeC
Confidence 9999999999999 4899999999999964 7777887 888999974
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.8e-05 Score=66.22 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCccchhhhhcCCCcc-----ccCchhHHHHHHHHHHHHcCChHHHHHHHhhc--------cchhhc
Q 031021 4 QIVARILIKALMAMPAPDFSLCLFLIPER-----VQMEDQFKTLIVLSHYLETGRFRHFWDEAAKH--------RNIVEA 70 (167)
Q Consensus 4 ~iv~~ILlKaL~~~P~~DF~lc~~Ll~~~-----~~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~--------~~~~~~ 70 (167)
+++....|.|+..+|.+|+-- -++... ...+|.+..+..+-..+..|+|..|++.+... .-+.+.
T Consensus 248 ~~~~y~~l~al~~~~r~~l~~--~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h 325 (429)
T 4b4t_R 248 SIATYASVTGLFTLERTDLKS--KVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH 325 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH--SSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHH--HHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH
Confidence 345555667777777766432 122211 12356788888899999999999999875321 333444
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcC--ceeeccCCCceEEEe
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCG--WILEGDQSTSQLIVL 136 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~G--W~~~~~~~~~~~vv~ 136 (167)
+..|.+.||......+...|++|+.+.||+.||++.+++++++.+.+..-- =++|.. + +++.+
T Consensus 326 ~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~--~-giv~~ 390 (429)
T 4b4t_R 326 ADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRV--N-GIVET 390 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETT--T-TEEEE
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCC--C-CEEEE
Confidence 677899999999999999999999999999999999999999877765432 245543 2 46665
No 6
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.54 E-value=0.0011 Score=56.98 Aligned_cols=128 Identities=11% Similarity=0.138 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCccchhhhhcCCCc--cccCchhHHHHHHHHHHHHcCChHHHHHHHhhcc-------chhhcccch
Q 031021 4 QIVARILIKALMAMPAPDFSLCLFLIPE--RVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHR-------NIVEAVPGF 74 (167)
Q Consensus 4 ~iv~~ILlKaL~~~P~~DF~lc~~Ll~~--~~~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~~-------~~~~~i~gF 74 (167)
++..-.+|.+|+...-+|+.--.. .+ ....+|++..+..|......|++.+|=+.+.... -+...+..+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~--~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L 298 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVS--GKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTL 298 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHH--SHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhc--cccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 345556677777777777653111 11 0114788999999999999999999988876642 222335667
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhh---cCceeeccCCCceEEEeC
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKAN---CGWILEGDQSTSQLIVLP 137 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~---~GW~~~~~~~~~~~vv~p 137 (167)
.+.||......+...|++|+.+.+++.||++.+++++.+.+.+.. .| ++|.. + +++.+.
T Consensus 299 ~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a-~IDq~--~-giv~~~ 360 (394)
T 3txn_A 299 YDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSG-ILDQG--E-GVLIVF 360 (394)
T ss_dssp HHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCE-EEETT--T-TEEEEC
T ss_pred HHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeE-EEcCC--C-CEEEEC
Confidence 888999999999999999999999999999999999998776544 23 55643 2 466663
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.94 E-value=0.0027 Score=43.14 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhh
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKAN 119 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~ 119 (167)
..-+.+.|.+.-.+.++..|++|+.+.||++||++.+++++++.+.+..
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~ 57 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITE 57 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 3456677888888889999999999999999999999999998776544
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.03 Score=45.68 Aligned_cols=85 Identities=5% Similarity=0.051 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHhhc-------cchhhcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCch
Q 031021 35 MEDQFKTLIVLSHYLETGRFRHFWDEAAKH-------RNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGL 107 (167)
Q Consensus 35 ~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~-------~~~~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~ 107 (167)
..+++.....+......+.+..|=..+... +.+...+..+.+.+|......+...|++|+.+.+++.||++.+
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~ 371 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQ 371 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHH
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHH
Confidence 356777777888888888887766655443 2233456677888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 031021 108 SLDKFLEHQKAN 119 (167)
Q Consensus 108 ~l~~~~~~~~~~ 119 (167)
++++++.+.+..
T Consensus 372 ~~E~~l~~lI~~ 383 (434)
T 4b4t_Q 372 QVEGKLSQMILD 383 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999988765443
No 9
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.058 Score=46.50 Aligned_cols=100 Identities=10% Similarity=0.138 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHc---CChHHHHHHHhhc----cch------hhcccchHHHHHHHHHHHHHHhcccccHHHHHHHhc
Q 031021 37 DQFKTLIVLSHYLET---GRFRHFWDEAAKH----RNI------VEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAIN 103 (167)
Q Consensus 37 ~~i~~i~~L~~lLe~---c~F~~FW~~l~~~----~~~------~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lg 103 (167)
+++.....|.....+ .+|+.+.+.++.. +-+ ......+.++|++.-...++.-|++|+.+.|+++||
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~ 370 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD 370 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC
Confidence 445554455555544 4567766665432 111 112355888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhc---CceeeccCCCceEEEeCCCC
Q 031021 104 LKGLSLDKFLEHQKANC---GWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 104 l~~~~l~~~~~~~~~~~---GW~~~~~~~~~~~vv~p~n~ 140 (167)
++.+++++++.+.+... | ++|.. + |+|.+..+.
T Consensus 371 l~~~evE~~ls~mI~~g~i~a-kIDq~--~-giV~F~~~~ 406 (445)
T 4b4t_P 371 LTESQTETYISDLVNQGIIYA-KVNRP--A-KIVNFEKPK 406 (445)
T ss_dssp SCHHHHHHHHHHHHHHTSSCC-EEETT--T-TEEEC----
T ss_pred cCHHHHHHHHHHHHHCCCEEE-EEcCC--C-CEEEECCCC
Confidence 99999999987665432 3 34533 2 478875544
No 10
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.67 Score=41.19 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHhhcc------chhhcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCC-chHHH
Q 031021 38 QFKTLIVLSHYLETGRFRHFWDEAAKHR------NIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLK-GLSLD 110 (167)
Q Consensus 38 ~i~~i~~L~~lLe~c~F~~FW~~l~~~~------~~~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~-~~~l~ 110 (167)
.+..-..|.+.....+..+|=+.+..+. .....|.....++.+.-++-++.+|++|+...++..|+++ .++.+
T Consensus 341 ~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE 420 (523)
T 4b4t_S 341 SLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVE 420 (523)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHH
Confidence 4555567889999999999999887662 2223345556678888889999999999999999999995 35566
Q ss_pred HHHHHHhhhcCceeeccCCCceEEEeCCCCC
Q 031021 111 KFLEHQKANCGWILEGDQSTSQLIVLPPNEF 141 (167)
Q Consensus 111 ~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~~ 141 (167)
..+.+.+.+-...---++.+ +.|++..++|
T Consensus 421 ~iVAkmI~dG~I~A~Idh~~-g~v~ske~~d 450 (523)
T 4b4t_S 421 YMVSRAIRDGVIEAKINHED-GFIETTELLN 450 (523)
T ss_dssp HHHHHHHHHTSSCCEECTTT-CCEECCSSSC
T ss_pred HHHHHHHHcCCceEEEecCC-CEEEeCcccc
Confidence 66655544332332222222 4566654444
No 11
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.00 E-value=1.5 Score=36.93 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCccchhhhhcCCC-ccccCchhHHHHHHHHHHHHcCChHHHHHHHhhccchhhcccchHHHHHHHH--
Q 031021 6 VARILIKALMAMPAPDFSLCLFLIP-ERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFA-- 82 (167)
Q Consensus 6 v~~ILlKaL~~~P~~DF~lc~~Ll~-~~~~~~~~i~~i~~L~~lLe~c~F~~FW~~l~~~~~~~~~i~gFed~IR~~i-- 82 (167)
...+++.||+.=--..|.--+..-. ......++...+..|=++...+++.+|=+.++.+.+-.+.+....+.+++.+
T Consensus 214 a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirl 293 (393)
T 4b4t_O 214 AYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICL 293 (393)
T ss_dssp HHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHH
Confidence 3445555555322255543333211 1233457778888888999999999986654443222233333333333322
Q ss_pred HHHHH----HhcccccHHHHHHHhcCCchHHHHHHHHHhh
Q 031021 83 IHVLS----LTYQKIPRTVLAEAINLKGLSLDKFLEHQKA 118 (167)
Q Consensus 83 ~~vV~----~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~ 118 (167)
..++. ..|++|+-+.+++.||++.++++.++-+.+.
T Consensus 294 l~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~ 333 (393)
T 4b4t_O 294 MTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAIS 333 (393)
T ss_dssp HHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 22333 3578899999999999999999999876643
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.44 E-value=0.74 Score=29.12 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+..|+.|+.++...=..++...||+.||++...+.+.++.+ ++.|+..
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L-~~~G~I~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRL-KKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHH-HHTTSEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCcEe
Confidence 34788999999874456999999999999999999998777 7889943
No 13
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.97 E-value=2.5 Score=27.18 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|+.|+..+.. ...++...|++.+|++...+...++.+ .+.|+-.
T Consensus 2 r~~Il~~L~~-~~~~s~~eLa~~lgvs~~tv~r~L~~L-~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNR-HNGGKTAEIAEALAVTDYQARYYLLLL-EKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHH-SCCCCHHHHHHHHTSCHHHHHHHHHHH-HHHTSEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 6677777764 367999999999999999999988776 7789986
No 14
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=78.29 E-value=16 Score=27.86 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCChHHHHHHHhhccchhhc--ccchHHHHHHHHH----HHHH--HhcccccHHHHHHHhcC------Cch
Q 031021 42 LIVLSHYLETGRFRHFWDEAAKHRNIVEA--VPGFEQAIQSFAI----HVLS--LTYQKIPRTVLAEAINL------KGL 107 (167)
Q Consensus 42 i~~L~~lLe~c~F~~FW~~l~~~~~~~~~--i~gFed~IR~~i~----~vV~--~tyqsI~~~~L~~~Lgl------~~~ 107 (167)
-..|.+...+.+...|=+.++.+++.... +--..+.+|.-+. +-|. ..|++|+.+.++.-|.+ +.+
T Consensus 83 y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ 162 (203)
T 3t5x_A 83 FAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDID 162 (203)
T ss_dssp GHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHH
Confidence 45788899999999999998876333221 1112334443222 2222 25999999999999964 556
Q ss_pred HHHHHHHHHhhh
Q 031021 108 SLDKFLEHQKAN 119 (167)
Q Consensus 108 ~l~~~~~~~~~~ 119 (167)
+++-.+...+.+
T Consensus 163 evE~ila~lI~~ 174 (203)
T 3t5x_A 163 EVQCILANLIYM 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777665443
No 15
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=77.81 E-value=8.2 Score=28.44 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=29.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...+|+|||++...+-..+.++ ++.||-.-
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 210 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRL-GDEGIIHL 210 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHH-HHHTSEEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHH-HHCCcEEe
Confidence 35788999999999999988888777 88899754
No 16
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=75.17 E-value=9.3 Score=31.38 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHh-cccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 77 AIQSFAIHVLSLT-YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 77 ~IR~~i~~vV~~t-yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
..|+.|++++..+ -+.+|-+.|++.||+|...+.+.++.+ ++.|..++...+.|....-|.
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L-~~~G~~i~~~~~~GY~L~~~~ 64 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQL-KLEGCKIDSVNHKGHLLQQLP 64 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHH-HHTTCEEEEETTTEEEEEECC
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHH-HhcCCeEEEeCCCeEEEecCc
Confidence 4688899998654 457899999999999999999999877 889998875445566555443
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=73.46 E-value=12 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=29.1
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||+|||++...+-..+.++ ++.|+-.-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L-~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYF-QVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 7899999999999999988888777 88999754
No 18
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=72.45 E-value=15 Score=27.20 Aligned_cols=34 Identities=3% Similarity=-0.019 Sum_probs=29.5
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...+|+|||++...+-..+.++ ++.|+-.-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L-~~~g~I~~ 207 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRL-EAHNILEV 207 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHH-HHCCcEEe
Confidence 46789999999999999999988877 78899764
No 19
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=72.19 E-value=7 Score=25.59 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...+.+..|..|+..+.. ...+...|++.||++...+-..++.. .+.|+-..
T Consensus 17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L-~~~Glv~~ 68 (98)
T 3jth_A 17 LKAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWL-RRDGLVTT 68 (98)
T ss_dssp HHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 334556788999999876 78999999999999999888888776 78899864
No 20
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=71.63 E-value=8.1 Score=28.52 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=29.4
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||++||++.+.+-..+.++ ++.||-.-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 199 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDF-KKMGILER 199 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHH-HHCCCEEE
Confidence 46899999999999999988888877 88999754
No 21
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=71.56 E-value=15 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...+|+|||++...+-..+.++ ++.|+-.-
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L-~~~g~I~~ 199 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKML-EDQNLISA 199 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHH-HHCCcEEe
Confidence 6889999999999999998988877 88898754
No 22
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=71.29 E-value=4.2 Score=26.77 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeec
Q 031021 72 PGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 72 ~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~ 126 (167)
..+.+..|..|+..+ -..++...|++.||++...+-..++.+ .+.|+-...
T Consensus 26 ~~l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L-~~~Glv~~~ 76 (96)
T 1y0u_A 26 YAVTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVL-EAGFCIERV 76 (96)
T ss_dssp HHHSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEE
T ss_pred HHhCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEEE
Confidence 344567888999988 367899999999999999988888776 788998753
No 23
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.07 E-value=13 Score=24.40 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=43.8
Q ss_pred hcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 69 EAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 69 ~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.....+-+..|..|+..+.. ...+...|++.+|++...+-+.++.. .+.|+-..
T Consensus 15 ~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L-~~~Glv~~ 68 (102)
T 3pqk_A 15 NLLKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVL-RESGIVET 68 (102)
T ss_dssp HHHHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 33445567789999999854 67899999999999999988888776 78899864
No 24
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=70.81 E-value=4.2 Score=27.26 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 73 GFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 73 gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+.+..|..|+..+ ....++...|++.||++...+-..++.. .+.||-..
T Consensus 17 ~l~~~~r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L-~~~gli~~ 66 (114)
T 2oqg_A 17 ALSDETRWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNAL-QACGLVES 66 (114)
T ss_dssp HTTCHHHHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HhCChHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeeE
Confidence 33456888899988 4567999999999999999988888776 78899864
No 25
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=70.70 E-value=15 Score=24.32 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 031021 72 PGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCG 121 (167)
Q Consensus 72 ~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~G 121 (167)
||-.+...+.|+.++..+=.=++...+++.+|++..++++.+.++ ++.|
T Consensus 14 ~~~~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~L-KkEg 62 (80)
T 2lnb_A 14 PGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRM-KKEL 62 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHH-HHTT
T ss_pred CcccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHcC
Confidence 566777899999999999999999999999999999999999777 5444
No 26
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=70.21 E-value=9 Score=24.68 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+..|..|+..+.. ...++...|++.||++...+-..+... .+.||-..
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L-~~~glv~~ 70 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARM-RDEGLIDS 70 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 34678888888854 447899999999999999988888776 78899874
No 27
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.68 E-value=13 Score=25.53 Aligned_cols=53 Identities=8% Similarity=-0.011 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...+.+..|..|+..+.. ...++...|++.||++...+-..+..+ .+.||...
T Consensus 36 ~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L-~~~Glv~~ 88 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQ-DEELCVCDIANILGVTIANASHHLRTL-YKQGVVNF 88 (122)
T ss_dssp HHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 344556788889988864 467899999999999999988888776 68899864
No 28
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=69.65 E-value=12 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHHhc--ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 82 AIHVLSLTY--QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 82 i~~vV~~ty--qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
++..++..+ ..++...+++-+|++...+.+.+... ++.|+-..
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L-~~~Glv~~ 58 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPL-RNAGLVKS 58 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHH-HHCCceEe
Confidence 344455544 46899999999999999999998776 88999654
No 29
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=69.28 E-value=4.9 Score=27.01 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 74 FEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-+..|..|+..+. -..++...|++.||++...+-..+... .+.|+...
T Consensus 23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L-~~~Glv~~ 71 (106)
T 1r1u_A 23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLL-KSVHLVKA 71 (106)
T ss_dssp TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 34678888998887 467899999999999999888888776 68999864
No 30
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=68.60 E-value=25 Score=26.44 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHh----------cccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 74 FEQAIQSFAIHVLSLT----------YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 74 Fed~IR~~i~~vV~~t----------yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-++.+..++....... ...++...+|++||++...+-..+.++ ++.|+-.-
T Consensus 149 ~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L-~~~g~I~~ 209 (250)
T 3e6c_C 149 PTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASL-KRENILDK 209 (250)
T ss_dssp HHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHH-HHCCCeEe
Confidence 4555555555544332 246799999999999999998988877 78899864
No 31
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=68.07 E-value=18 Score=26.21 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=30.1
Q ss_pred cccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 90 YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 90 yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...++...+|++||++...+-..+.++ ++.|+-.-
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 195 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHAL-AEEGVVRL 195 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 356899999999999999998888777 88999854
No 32
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=67.83 E-value=21 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||+|||++.+.+-..+.++ ++.|+-.-
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L-~~~g~I~~ 219 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKL-QADGLLHA 219 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH-HHCCCEEE
Confidence 4789999999999999999988777 88999654
No 33
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=67.57 E-value=10 Score=24.35 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 72 PGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 72 ~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
..+.+..|..|+..+.. ...++...|++.+|++...+-..+... .+.||..
T Consensus 11 ~~l~~~~~~~iL~~L~~-~~~~~~~ela~~l~is~~tvs~~l~~L-~~~gli~ 61 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLP-RRKAPFSQIQKVLDLTPGNLDSHIRVL-ERNGLVK 61 (100)
T ss_dssp HHHHSHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHH-HHTTSEE
T ss_pred cccCChHHHHHHHHHHh-cCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 45667788889988863 467999999999999999888888776 7789986
No 34
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=66.98 E-value=22 Score=26.17 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=29.2
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||++||++.+.+-..+.++ ++.|+-.-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 212 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTF-VSERMLAL 212 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEee
Confidence 46899999999999999998888877 88899653
No 35
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.97 E-value=13 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHHHHHHHh------cccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLT------YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~t------yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
++.|+..|... | ..+...+++.||+|...+...+..+ .+.|.-.-
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS~~TVrr~L~~L-e~kG~I~R 56 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAAGLSIYQVRLYLEQL-HDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCCHHHHHHHHHHH-HHCCcEEe
Confidence 34455555544 5 5999999999999988899988777 66776643
No 36
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.59 E-value=14 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=28.4
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||+|||++.+.+-..+.++ ++.||-.-
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L-~~~g~I~~ 195 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSL-IKEGYISR 195 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHH-HHTTSSEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHH-HHCCcEEE
Confidence 4899999999999999988888777 88999643
No 37
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=65.54 E-value=27 Score=26.18 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHh----------cccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 73 GFEQAIQSFAIHVLSLT----------YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 73 gFed~IR~~i~~vV~~t----------yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++.+..++....... -..++...||++||++.+.+-..+.++ ++.|+-.-
T Consensus 164 ~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L-~~~GlI~~ 225 (243)
T 3la7_A 164 DMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDL-REKKMISI 225 (243)
T ss_dssp SHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHH-HHCCCEEE
Confidence 34555555555554321 236789999999999999999988877 78899764
No 38
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=64.28 E-value=9.6 Score=26.06 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=44.7
Q ss_pred hcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 69 EAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 69 ~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.....+-+..|..|+..+. -...+...|++.||++...+-..+... .+.|+...
T Consensus 10 ~~~~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L-~~~GlV~~ 63 (118)
T 3f6o_A 10 GIFQALADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFL-EDSGWIRT 63 (118)
T ss_dssp HHHHHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHH-HHCCCeEE
Confidence 3445566789999999997 378899999999999999888888776 78999864
No 39
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=63.48 E-value=5.4 Score=27.04 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=41.3
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...+.+..|..|+..+.. ..++...|++.||++...+-..++.+ .+.|+-..
T Consensus 19 ~~al~~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L-~~~GlV~~ 70 (108)
T 2kko_A 19 GKALANGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQAL-KSGGLVEA 70 (108)
T ss_dssp HHHHTTSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 334445678888888863 78899999999999999988888776 78899863
No 40
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=62.92 E-value=13 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=29.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||+|||++...+-..+.++ ++.||-.-
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 196 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSL-EEQGLVHV 196 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 35899999999999999988888777 78999643
No 41
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=62.73 E-value=17 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||++||++.+.+-..++++ ++.||-.-
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L-~~~g~I~~ 178 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGEL-AREGYIRS 178 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 35789999999999999998888777 88999753
No 42
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=62.39 E-value=14 Score=26.10 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|.++..|+..+.. ..+++...|++.||++...+...++.+ .+.|+-.
T Consensus 4 d~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 50 (144)
T 2cfx_A 4 DQIDLNIIEELKK-DSRLSMRELGRKIKLSPPSVTERVRQL-ESFGIIK 50 (144)
T ss_dssp CHHHHHHHHHHHH-CSCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeE
Confidence 3456677877754 478999999999999999988888777 7889875
No 43
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=61.98 E-value=11 Score=28.50 Aligned_cols=52 Identities=10% Similarity=0.175 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..+.+..|..|+..+. . ..++...|++.+|++...+..-++.+ .+.|+-..
T Consensus 14 ~k~l~d~~~~~IL~~L~-~-~~~s~~eLA~~lglS~stv~~~l~~L-e~~GlI~~ 65 (192)
T 1uly_A 14 IKVMLEDTRRKILKLLR-N-KEMTISQLSEILGKTPQTIYHHIEKL-KEAGLVEV 65 (192)
T ss_dssp HHHHHSHHHHHHHHHHT-T-CCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 34456788999999998 3 78999999999999999988888776 78898753
No 44
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=61.74 E-value=14 Score=25.33 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...+.+..|..|+..+.. ...+...|++.||++...+-..++.+ .+.|+-..
T Consensus 15 ~~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L-~~~GlV~~ 66 (118)
T 2jsc_A 15 GRALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCL-RGCGLVVA 66 (118)
T ss_dssp HHHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHH-TTTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCceEE
Confidence 334456789999998863 46788899999999999888888776 77899864
No 45
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=61.67 E-value=26 Score=26.72 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||+|||++...+-..+.++ ++.|+-.-
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L-~~~GlI~~ 249 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKML-EDQNLISA 249 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEE
Confidence 6889999999999999998988777 88899764
No 46
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=61.45 E-value=17 Score=27.21 Aligned_cols=33 Identities=6% Similarity=0.066 Sum_probs=28.5
Q ss_pred cccHHHHHHHhcCCc-hHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKG-LSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~-~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||+|||++. +.+-..+.++ ++.||-.-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l-~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKL-KQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHH-HHCCCEEe
Confidence 688999999999999 7988888877 88999643
No 47
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=60.83 E-value=18 Score=23.51 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 82 AIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 82 i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|.+.| .....++.+.|++.||+|+..++.-++++ .+.|--.
T Consensus 7 Il~~L-~~~g~vsv~eLa~~l~VS~~TIRrdL~~L-e~~G~l~ 47 (78)
T 1xn7_A 7 VRDLL-ALRGRMEAAQISQTLNTPQPMINAMLQQL-ESMGKAV 47 (78)
T ss_dssp HHHHH-HHSCSBCHHHHHHHTTCCHHHHHHHHHHH-HHHTSEE
T ss_pred HHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 44444 35789999999999999999999998887 6677654
No 48
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=60.28 E-value=31 Score=25.26 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.4
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.++...||++||++...+-..+.++ ++.|+-.-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l-~~~g~I~~ 209 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADF-AHRGWIRL 209 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH-HHCCCEEe
Confidence 5799999999999999988888777 88899643
No 49
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=59.86 E-value=14 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 74 FEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-+..|..|+..+.. ...+...|++.||++...+-..++.+ .+.|+...
T Consensus 43 L~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~L-e~~Glv~~ 91 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSL-RNLRLVSY 91 (122)
T ss_dssp HCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred hCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 345578888888863 57889999999999999888888776 67999874
No 50
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=59.67 E-value=12 Score=25.38 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 78 IQSFAIHVLSLTYQKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
+|+.|...+.. -..+ +...|++.+|+|...+.+.+..+ .+.|+-.-..+|+.+.++.+.
T Consensus 29 i~~~I~~~l~~-g~~lps~~eLa~~lgVSr~tVr~al~~L-~~~GlI~~~~gG~~G~~V~~~ 88 (102)
T 2b0l_A 29 AIEHIFEELDG-NEGLLVASKIADRVGITRSVIVNALRKL-ESAGVIESRSLGMKGTYIKVL 88 (102)
T ss_dssp HHHHHTTSSBT-TEEEECHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEEECSSSCEEEEEC
T ss_pred HHHHHHhhhcC-CCcCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEEEeCCCCcEEEecC
Confidence 37777633322 2345 99999999999999999988776 788997643312135666643
No 51
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=59.58 E-value=14 Score=26.12 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|.++..|+..+.. ..+++...|++.||+|...+...++.+ .+.|+-.
T Consensus 8 d~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKL-KKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHH-HHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 4566778887764 478999999999999999988888777 6778875
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.47 E-value=33 Score=22.28 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcc---cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 75 EQAIQSFAIHVLSLTYQ---KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyq---sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+.+.+.|+..+. ... .++...||+-||++...+.+.+..+ ++.|+-..
T Consensus 8 ~~~~~~~IL~~L~-~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L-e~~G~I~~ 59 (81)
T 1qbj_A 8 YQDQEQRILKFLE-ELGEGKATTAHDLSGKLGTPKKEINRVLYSL-AKKGKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHH-HHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred chHHHHHHHHHHH-HcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEe
Confidence 4456677777777 445 8999999999999999999999877 78898764
No 53
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=59.16 E-value=21 Score=22.92 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+..+..++ .....++...|++.+|++...+-..+..+ .+.||-..
T Consensus 23 ~~~~l~~l~-~~~~~~t~~ela~~l~is~~tv~~~l~~L-~~~g~v~~ 68 (109)
T 2d1h_A 23 DVAVLLKMV-EIEKPITSEELADIFKLSKTTVENSLKKL-IELGLVVR 68 (109)
T ss_dssp HHHHHHHHH-HHCSCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEe
Confidence 334444444 44678999999999999999888888776 78899864
No 54
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=59.08 E-value=18 Score=25.57 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|..+..|+..+. ....++...|++.+|++...+..-++.+ .+.|+-.
T Consensus 6 d~~~~~iL~~L~-~~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 52 (150)
T 2w25_A 6 DDIDRILVRELA-ADGRATLSELATRAGLSVSAVQSRVRRL-ESRGVVQ 52 (150)
T ss_dssp CHHHHHHHHHHH-HCTTCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEE
T ss_pred CHHHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 456777888875 4578999999999999999988888777 7789874
No 55
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.03 E-value=15 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|.+|..|+..+.. -.+++...|++.||++...+..-++.+ .+.|+-.
T Consensus 2 d~~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 48 (150)
T 2pn6_A 2 DEIDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKL-EKDGVIK 48 (150)
T ss_dssp CHHHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHH-HHTTSSC
T ss_pred ChHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCcEE
Confidence 4567788888764 457999999999999999988888777 7788764
No 56
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.03 E-value=20 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 82 AIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 82 i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|...| .....++...|++.||+|+..++.-+..+ .+.|--.
T Consensus 7 Il~~L-~~~g~vsv~eLA~~l~VS~~TIRrDL~~L-e~~G~l~ 47 (87)
T 2k02_A 7 VRDML-ALQGRMEAKQLSARLQTPQPLIDAMLERM-EAMGKVV 47 (87)
T ss_dssp HHHHH-HHSCSEEHHHHHHHTTCCHHHHHHHHHHH-HTTCCSE
T ss_pred HHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 33444 34789999999999999999999999887 6677543
No 57
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=56.98 E-value=17 Score=25.76 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|.++..|+..+.. ..+++...|++.+|+|...+..-++.+ .+.|+-.
T Consensus 7 d~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 53 (152)
T 2cg4_A 7 DNLDRGILEALMG-NARTAYAELAKQFGVSPETIHVRVEKM-KQAGIIT 53 (152)
T ss_dssp CHHHHHHHHHHHH-CTTSCHHHHHHHHTSCHHHHHHHHHHH-HHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHcCCcc
Confidence 4566778887754 368999999999999999988888777 7778765
No 58
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=56.46 E-value=30 Score=22.42 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=27.9
Q ss_pred ccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 93 IPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 93 I~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
++...|++.+|++...+-..+... .+.||-.+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~L-e~~Glv~~ 62 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKF-EEAKMVEC 62 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH-HHCcCccC
Confidence 899999999999998888888766 78999954
No 59
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.52 E-value=13 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=45.0
Q ss_pred hcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 69 EAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 69 ~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.....+-+..|..|+..+. -...+...|++.||++...+-..++.+ ++.||...
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L-~~aGlV~~ 103 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVL-TEAGLVTP 103 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 4455567789999999997 578999999999999998888888766 78999864
No 60
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=55.11 E-value=30 Score=22.12 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+..|+..+.. ...++...|++.+|++...+-..++.+ .+.||-..
T Consensus 21 ~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L-~~~glv~~ 66 (109)
T 1sfx_A 21 SDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVL-LKRGFVRR 66 (109)
T ss_dssp HHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEE
Confidence 45666666643 578999999999999999988888777 78899763
No 61
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=54.97 E-value=22 Score=24.20 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.|+..+. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~L-e~~glv~r 82 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKL-EEMGLVVR 82 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHH-HHCCCEEe
Confidence 4556777777 889999999999999999888888776 67899863
No 62
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=54.85 E-value=23 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.7
Q ss_pred ccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 93 IPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 93 I~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
++...+|+|||++...+-..+.++ ++.|+.
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L-~~~gi~ 208 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRL-KAAGVT 208 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHH-GGGTEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH-HHCCeE
Confidence 448899999999999998988777 788974
No 63
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=53.76 E-value=16 Score=24.60 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..|-.|+..+.. ..++...+++.||++...+-..++.+ .+.|+..-
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~L-e~~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVL-RNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHH-HHHCSEEE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 457777777775 57999999999999999888888777 55899863
No 64
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.31 E-value=29 Score=23.63 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.++..+......++...|++.+|++...+-..+... .+.||-.-
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~L-e~~glv~r 82 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLREL-ERGGLIVR 82 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHH-HHCCCEee
Confidence 445677777665778999999999999999888888776 77899863
No 65
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=52.56 E-value=22 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|..+..|+..+.. ..+++...|++.||+|...+..-++.+ .+.|+-.
T Consensus 6 d~~~~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 52 (151)
T 2cyy_A 6 DEIDKKIIKILQN-DGKAPLREISKITGLAESTIHERIRKL-RESGVIK 52 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHCSCHHHHHHHHHHH-HHHTSSC
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeE
Confidence 4566778887754 368999999999999999888888776 6677753
No 66
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=52.35 E-value=10 Score=27.42 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=29.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||++||++...+-..++++ ++.||-.-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L-~~~g~I~~ 171 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADL-RREGLIAT 171 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHH-HHHTSEEE
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 35889999999999999998888877 78899653
No 67
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.25 E-value=37 Score=22.96 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHH-Hhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 76 QAIQSFAIHVLS-LTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 76 d~IR~~i~~vV~-~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
+.|...+..-|. ..| +.+ +...|++.+|+|...+.+.+..+ ...|+-.-.. +. +.+|.+.
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L-~~~Gli~~~~-~~-G~~V~~~ 76 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSL-LDDNVIEKRR-GL-GMLVKAG 76 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECTT
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEEec-CC-eEEEeCC
Confidence 334444444443 344 356 78899999999999999998777 7899965433 43 5677654
No 68
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.45 E-value=8.5 Score=25.78 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..|..|+..+...=+.++...|++.+|++...+.+.+... .+.|+-.-
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L-~~~GlV~~ 65 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLL-EEQGFVSY 65 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHH-HHHTSCEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 3566677766544446999999999999999999988776 78899653
No 69
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.33 E-value=31 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+......++...|++.+|++...+-..+... .+.||-.-
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L-~~~glv~r 84 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGL-ESQGLVRR 84 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHH-HHCCCeee
Confidence 34566777556788999999999999999888888776 77899863
No 70
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=50.83 E-value=29 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+-.++..+ ....++...|++.+|++...+-..+... .+.||-.
T Consensus 40 q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~L-e~~Glv~ 82 (151)
T 3kp7_A 40 QSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKL-LNAELVK 82 (151)
T ss_dssp HHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEE
Confidence 44566677 7889999999999999999888888777 7789987
No 71
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=50.04 E-value=27 Score=25.59 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 74 FEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
-.|.++..|+..+.. -.+++...|++.||+|...+..-++.+ .+.|+-.
T Consensus 14 ~ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L-~~~G~I~ 62 (171)
T 2ia0_A 14 HLDDLDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKL-QERGVIE 62 (171)
T ss_dssp CCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEE
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 346677788888865 457999999999999999988888777 7888864
No 72
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=49.02 E-value=24 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
++++.|+.++. .-. ++...||+-||++...+.+.+..+ .+.|....
T Consensus 17 ~~~~~IL~lL~-~~g-~sa~eLAk~LgiSk~aVr~~L~~L-e~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEG-ATAAQLTRQLNMEKREVNKALYDL-QRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHS-SST-EEHHHHHHHSSSCHHHHHHHHHHH-HHHTSSEE
T ss_pred HHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEe
Confidence 57888888888 444 999999999999999999998776 55666553
No 73
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.01 E-value=30 Score=18.58 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHH
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
.|..|.... .+..+...+|+.||++...+..++..
T Consensus 10 ~~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 10 ERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 444444443 35678899999999999888888743
No 74
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=48.85 E-value=15 Score=27.37 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=28.9
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++...||+|||++.+.+-..+.++ ++.|+-.-
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l-~~~glI~~ 218 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNEL-QDNGLIEL 218 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHH-HHTTSCEE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHH-HHCCCEEe
Confidence 45899999999999999988888777 78899643
No 75
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=48.55 E-value=29 Score=24.77 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
|..+..|+..+.. ..+++...|++.+|+|...+...++.+ .+.|+-.
T Consensus 9 d~~~~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 55 (162)
T 2p5v_A 9 DKTDIKILQVLQE-NGRLTNVELSERVALSPSPCLRRLKQL-EDAGIVR 55 (162)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEe
Confidence 4566778887754 456999999999999999988888777 7788864
No 76
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=47.49 E-value=19 Score=23.51 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhc---ccccHHHHHHHh-cCCchHHHHHHHHH
Q 031021 78 IQSFAIHVLSLTY---QKIPRTVLAEAI-NLKGLSLDKFLEHQ 116 (167)
Q Consensus 78 IR~~i~~vV~~ty---qsI~~~~L~~~L-gl~~~~l~~~~~~~ 116 (167)
-|..|+.+....+ ..++.+.|++.. |+||.++...|.+.
T Consensus 15 ~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eA 57 (86)
T 2krk_A 15 ARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 57 (86)
T ss_dssp HHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4777777766655 368889999998 99999999988655
No 77
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=46.53 E-value=23 Score=20.81 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCc-hHHHHHHHHHhhhcCceeec
Q 031021 95 RTVLAEAINLKG-LSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 95 ~~~L~~~Lgl~~-~~l~~~~~~~~~~~GW~~~~ 126 (167)
+..+.++.|.++ ++...++ .+++|-++.
T Consensus 9 ia~F~~iTG~~d~~~A~~~L----ea~nWDLe~ 37 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLL----EQNNWDLVA 37 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHH----HHTTTCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH----HHcCCcHHH
Confidence 346677889987 7777777 778998763
No 78
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=45.44 E-value=43 Score=22.72 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
-+-.++..+... ..++...|++.+|++...+-..+... .+.||-.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L-~~~Glv~ 82 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVL-LRKELIV 82 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHH-HHCCCee
Confidence 344566666554 88999999999999999888888776 7789986
No 79
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.90 E-value=41 Score=23.35 Aligned_cols=59 Identities=5% Similarity=-0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH-Hhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeC
Q 031021 76 QAIQSFAIHVLS-LTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLP 137 (167)
Q Consensus 76 d~IR~~i~~vV~-~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p 137 (167)
+.|...+.+-|. ..| +.+ +...|++.+|+|...+.+.+..+ ...|+-.-.. |. +.+|.+
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L-~~~Gli~~~~-g~-G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKEL-EAQKVIRTIP-GK-GTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEEec-CC-eEEEcc
Confidence 344444444333 345 367 89999999999999999988776 7899986533 43 567765
No 80
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=44.25 E-value=44 Score=20.11 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCG 121 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~G 121 (167)
=|.+|.+++..+ . +....|+.||++...|-..+ +++|
T Consensus 22 Er~~I~~aL~~~-g--n~~~aA~~LGIsr~tL~rkl----kk~g 58 (61)
T 1g2h_A 22 EAQVLKLFYAEY-P--STRKLAQRLGVSHTAIANKL----KQYG 58 (61)
T ss_dssp HHHHHHHHHHHS-C--SHHHHHHHTTSCTHHHHHHH----HTTT
T ss_pred HHHHHHHHHHHh-C--CHHHHHHHhCCCHHHHHHHH----HHhC
Confidence 367788888877 4 56678999999998777666 6555
No 81
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=44.25 E-value=57 Score=21.55 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeec
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~ 126 (167)
..|+..++ +. +....++..+|++...+.+.++.. ++.|.-...
T Consensus 11 ~~IL~~i~--~~-~~~t~La~~~~ls~~~~~~~l~~L-~~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACK--SG-SPKTRIMYGANLSYALTGRYIKML-MDLEIIRQE 53 (95)
T ss_dssp HHHHHHHT--TC-BCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEE
T ss_pred HHHHHHHH--cC-CCHHHHHHHhCcCHHHHHHHHHHH-HHCCCeEEE
Confidence 34555554 33 999999999999999999998777 889998754
No 82
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=44.22 E-value=60 Score=22.97 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=34.9
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCC
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~ 140 (167)
.++...+|+-+|++..-+.+.+..+ ++.|+-.... |.++-+.....+
T Consensus 28 ~~s~~~IA~~~~i~~~~l~kil~~L-~~aGlv~s~r-G~~GGy~Lar~p 74 (143)
T 3t8r_A 28 CISLKSIAEENNLSDLYLEQLVGPL-RNAGLIRSVR-GAKGGYQLRVPA 74 (143)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEECS-SSSSEEEESSCG
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH-HHCCEEEecC-CCCCCeeecCCc
Confidence 5899999999999999999998777 8899965432 332345554444
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=43.86 E-value=38 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.|.++..|+..+.. ..+++...|++.+|++...+..-++.+ .+.|+-.
T Consensus 25 ld~~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~rl~~L-~~~G~I~ 72 (171)
T 2e1c_A 25 LDEIDKKIIKILQN-DGKAPLREISKITGLAESTIHERIRKL-RESGVIK 72 (171)
T ss_dssp CCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSSC
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeE
Confidence 35577788888765 358999999999999999988888777 6778753
No 84
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=43.35 E-value=47 Score=23.16 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=34.6
Q ss_pred ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 91 QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 91 qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
..+ +...|++.+|+|...+.+.+..+ ...|+-.-.. |. +.+|.+.
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L-~~~Gli~~~~-g~-G~~V~~~ 71 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLL-VEAGILYKKR-GI-GMFVSAQ 71 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHH-HTTTSEEEET-TT-EEEECTT
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCcEEEec-CC-EEEEecC
Confidence 456 78999999999999999988776 7889976433 43 5677653
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=42.80 E-value=38 Score=21.16 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhc---ccccHHHHHHHh-cCCchHHHHHHHHH
Q 031021 78 IQSFAIHVLSLTY---QKIPRTVLAEAI-NLKGLSLDKFLEHQ 116 (167)
Q Consensus 78 IR~~i~~vV~~ty---qsI~~~~L~~~L-gl~~~~l~~~~~~~ 116 (167)
-|..|+.+....+ ..++.+.|++.. |+||.++...|.+.
T Consensus 7 ~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA 49 (78)
T 3kw6_A 7 ARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 49 (78)
T ss_dssp HHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3666666665555 367788888887 79999998888654
No 86
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=42.78 E-value=13 Score=24.67 Aligned_cols=62 Identities=5% Similarity=0.003 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHhcccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 74 FEQAIQSFAIHVLSLTYQKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
..+.+|..|..-.-..=..+ +...|++.+|+|...+.+.+..+ .+.|+-.... +. +.++.+.
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L-~~~Gli~~~~-g~-G~~v~~~ 78 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVL-KSEGLVSSRG-AL-GTVVEKN 78 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTT-TTSSCCEEET-TT-EEESCSC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEEeC-CC-eEEEccC
Confidence 34445555543111122456 89999999999999999988666 7889976433 33 4566544
No 87
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=42.50 E-value=43 Score=25.42 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceee--ccCC-CceEEEeCCCC
Q 031021 75 EQAIQSFAIHVLSLTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILE--GDQS-TSQLIVLPPNE 140 (167)
Q Consensus 75 ed~IR~~i~~vV~~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~--~~~~-~~~~vv~p~n~ 140 (167)
.+.||..|. +..| +.+ +...|++-||+|-..+.+.+..+ ...|+..- .. | ++|.+|.+...
T Consensus 10 ~~~L~~~I~---~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L-~~~GlV~~~~~~-~~~~G~~V~~~~~ 77 (239)
T 2di3_A 10 MDWVTEELR---SGRLKIGDHLPSERALSETLGVSRSSLREALRVL-EALGTISTATGS-GPRSGTIITAAPG 77 (239)
T ss_dssp HHHHHHHHH---HTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHH-HHHTSEECCSTT-SGGGCCEECCCCC
T ss_pred HHHHHHHHH---hCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCeEeeccc-CCCCCceeeCCcc
Confidence 344555543 3444 478 47799999999999999998776 78899865 43 3 02567776554
No 88
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=42.32 E-value=61 Score=23.57 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCCC
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEF 141 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~~ 141 (167)
..++...+|+-+|++..-+.+.+..+ ++.|+-.. ..|.++-+...+.++
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L-~~aGlv~s-~rG~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVL-HKHGYLTG-TVGKNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHH-HHTTSSEE-ECSTTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEe-ecCCCCCeEecCChh
Confidence 45899999999999999999998777 88999654 223333466554443
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.11 E-value=41 Score=21.98 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=35.3
Q ss_pred cchhhcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 65 RNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 65 ~~~~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
..+...+..+-+.-|+.+. ++ ++-.+....|+.||++...+...+....++.|-.
T Consensus 19 ~~l~~~l~~Lt~~e~~vl~-l~---~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 19 SHMQDPLSGLTDQERTLLG-LL---SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp --------CCCHHHHHHHH-HH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCHHHHHHHH-HH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3444455556555554433 33 7778889999999999999999988887777654
No 90
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.70 E-value=31 Score=23.73 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.+..|+..+.. -..++...|++.+|+|...+...++.+ .+.|+-.
T Consensus 5 ~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L-~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEK-DARTPFTEIAKKLGISETAVRKRVKAL-EEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHH-HHHTSSC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEe
Confidence 45667776653 357899999999999999988888776 6778763
No 91
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=41.48 E-value=44 Score=23.75 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+-.++..+......++...|++.+|++...+-..+... .+.||..-
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L-e~~GlV~r 100 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQL-EDKGLISR 100 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHH-HHCCCEEe
Confidence 345677777766677999999999999998888888776 77899863
No 92
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.22 E-value=56 Score=21.16 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=26.5
Q ss_pred HHHHHHHHhcc--cccHHHHHHHhcCCchHHHHHHHH
Q 031021 81 FAIHVLSLTYQ--KIPRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 81 ~i~~vV~~tyq--sI~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
.+...|..-|. .++.+.||+.+|++...+...+++
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44445555664 699999999999999888887743
No 93
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.85 E-value=49 Score=22.30 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...+..++...-..++...|++.+|++...+-..+... .+.||-.-
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L-~~~G~v~r 73 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKL-EELGFVRK 73 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 34455666545578999999999999998888888766 78899864
No 94
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=40.66 E-value=60 Score=22.43 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.|+..+.. ...++...|++.+|++...+-..+..+ .+.||-.-
T Consensus 52 ~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~L-e~~glv~r 95 (162)
T 2fa5_A 52 WRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARL-LERGFIRR 95 (162)
T ss_dssp HHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEC
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEee
Confidence 445566654 678999999999999999888888776 67799863
No 95
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=40.55 E-value=65 Score=22.12 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH-Hhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeC
Q 031021 75 EQAIQSFAIHVLS-LTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLP 137 (167)
Q Consensus 75 ed~IR~~i~~vV~-~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p 137 (167)
.+.|...+.+-|. ..| +.+ +...|++-+|+|...+.+.+..+ ...|+-.-.. |. +.+|.+
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L-~~~G~i~~~~-g~-G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL-ERAGYIYAKR-GM-GSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCeEEEec-CC-EEEEec
Confidence 3344444444443 344 466 49999999999999999998777 7889986533 33 567765
No 96
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=39.48 E-value=46 Score=25.49 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 74 FEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
..+.||..|..-.=..=+.++...|++.||+|...+.+.+..+ ...|+-.-.. + +|.+|.+.
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L-~~~Glv~~~~-~-~G~~V~~~ 92 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQL-EAQSLLRVET-H-KGAVVAPL 92 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEEET-T-TEEEECCC
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEeC-C-CceEEecC
Confidence 5566666665422223368899999999999999999998776 7889986543 3 35666643
No 97
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.37 E-value=67 Score=21.43 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 33 ~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L-~~~gli~~ 77 (142)
T 3bdd_A 33 RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLL-EESGYIIR 77 (142)
T ss_dssp HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 4456666654 467999999999999999988888776 77899863
No 98
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.95 E-value=64 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. ...++...|++.+|++...+-..+... .+.||-..
T Consensus 31 ~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L-~~~glv~~ 75 (138)
T 3bpv_A 31 QVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRL-EESGFIER 75 (138)
T ss_dssp HHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 4456666655 478999999999999999888888776 77899864
No 99
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=38.21 E-value=1.1e+02 Score=23.25 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCCC
Q 031021 75 EQAIQSFAIHVLSLTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEF 141 (167)
Q Consensus 75 ed~IR~~i~~vV~~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~~ 141 (167)
.+.+|+.|.. ..| +.+ +...|++.+|+|..-+.+.+..+ ...|+-.-.. |. |.+|.+....
T Consensus 11 ~~~l~~~I~~---g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L-~~~g~i~~~~-g~-G~~V~~~~~~ 75 (239)
T 3bwg_A 11 ATEIETYIEE---HQLQQGDKLPVLETLMAQFEVSKSTITKSLELL-EQKGAIFQVR-GS-GIFVRKHKRK 75 (239)
T ss_dssp HHHHHHHHHH---TTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECCCCCC
T ss_pred HHHHHHHHHh---CCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCcEEEeC-Cc-eEEEecCccc
Confidence 3444444432 344 478 79999999999999999998777 7789987533 43 5677665443
No 100
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=38.21 E-value=75 Score=20.10 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhc--ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTY--QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~ty--qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+...|+.++..-= ..++...||+.||++...+...+... ++.|+-..
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L-~~~G~I~~ 63 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL-AKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEe
Confidence 44566777776654 37999999999999999999998877 77888754
No 101
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=38.13 E-value=39 Score=25.63 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 70 AVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 70 ~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
....+.+..|..|+.++. ....+...|++.||++...+-..+..+ .+.||-..
T Consensus 8 ilkaL~~~~rl~IL~~L~--~~~~s~~eLa~~l~is~stvs~hLk~L-e~~GLV~~ 60 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLT--KRPYFVSELSRELGVGQKAVLEHLRIL-EEAGLIES 60 (202)
T ss_dssp HHHHHHSHHHHHHHHHHH--HSCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCceEE
Confidence 344566789999999984 578999999999999999888888766 78899864
No 102
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=37.97 E-value=79 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.7
Q ss_pred cccccHHHHHHHhcCCchHHHHHHHH
Q 031021 90 YQKIPRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 90 yqsI~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
-..++.+.||+.+|++...+...+++
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46799999999999999888887743
No 103
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=37.80 E-value=72 Score=21.40 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 35 ~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L-~~~glv~r 79 (145)
T 2a61_A 35 QFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRL-EADGYLTR 79 (145)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHH-HHCCCeee
Confidence 4456666654 568999999999999999888888776 77899864
No 104
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=37.06 E-value=55 Score=22.39 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.-.++..+...-..++...|++.+|++...+-..+... .+.||-.-
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L-e~~Glv~r 86 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDEL-EERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHH-HTTTSEEC
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHH-HHCCCEEe
Confidence 344566666655557899999999999999888888776 77899863
No 105
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=36.85 E-value=1e+02 Score=21.33 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+.|...+... ..++...|++.||++...+...+... .+.||-.-
T Consensus 43 ~~i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~L-e~~Glv~r 86 (155)
T 2h09_A 43 ELISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRL-ATMGLIEM 86 (155)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHH-HHTTCEEE
T ss_pred HHHHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHH-HHCCCEEE
Confidence 3444444332 56889999999999999988888777 66799654
No 106
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=36.30 E-value=68 Score=26.65 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
...=|+.|++.+.. ...+++..|++.+|||...+-+.++++ .+.|+-.+
T Consensus 37 r~~n~~~il~~l~~-~~~~sr~ela~~~gls~~tv~~~v~~L-~~~gli~~ 85 (429)
T 1z05_A 37 KQINAGRVYKLIDQ-KGPISRIDLSKESELAPASITKITREL-IDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 34455668888865 578999999999999999988888877 56898766
No 107
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=36.10 E-value=40 Score=23.35 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.|+..+......++...|++.+|++...+-..+... .+.||-.-
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~L-e~~Gli~r 94 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRL-IKDGMVVK 94 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHH-HHCCCEEe
Confidence 345577777656678999999999999998888888776 67899864
No 108
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=35.87 E-value=98 Score=22.73 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.|-.+|.+.+...=...+...|++.||++...+...++.. ++.|+-.-
T Consensus 9 ~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L-e~~G~i~~ 56 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIAL-EKKGYIER 56 (196)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH-HHCCCEEe
Confidence 4455566555555556899999999999988888887665 78898764
No 109
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=35.71 E-value=20 Score=29.40 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.-|+.|++.+. ...+++..|++.+|||...+-+.++++ .+.|+-.+
T Consensus 20 ~~~~~il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L-~~~gli~~ 65 (380)
T 2hoe_A 20 ENISRILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIF-LEKGIVVE 65 (380)
T ss_dssp --CCCSHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEe
Confidence 34456888887 789999999999999999988888777 67898875
No 110
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.59 E-value=62 Score=22.10 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+..+ .+.||-.-
T Consensus 39 ~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~L-e~~glv~r 83 (155)
T 1s3j_A 39 QLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRL-EQKNLIAR 83 (155)
T ss_dssp HHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEee
Confidence 3456666654 567999999999999999888888776 77899863
No 111
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=35.49 E-value=46 Score=20.98 Aligned_cols=40 Identities=3% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhc---ccccHHHHHHHh-cCCchHHHHHHHHHh
Q 031021 78 IQSFAIHVLSLTY---QKIPRTVLAEAI-NLKGLSLDKFLEHQK 117 (167)
Q Consensus 78 IR~~i~~vV~~ty---qsI~~~~L~~~L-gl~~~~l~~~~~~~~ 117 (167)
-|..|+......+ ..++...|++.. |++|.++...|.+.+
T Consensus 5 ~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~ 48 (83)
T 3aji_B 5 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESG 48 (83)
T ss_dssp HHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4677777666554 367788899888 899999999886553
No 112
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=35.36 E-value=61 Score=24.15 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
.+.||..|..--=..=+.++...|++-||+|-..+.+.+..+ ...|+-.-.. ++ |.+|.+.
T Consensus 18 ~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L-~~eGlv~~~~-~~-G~~V~~~ 78 (218)
T 3sxy_A 18 YNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQL-ATEGLVKVVP-RV-GFFVTDV 78 (218)
T ss_dssp HHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHH-HHHTSEEEET-TT-EEEECCC
T ss_pred HHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEeC-CC-ceEEcCC
Confidence 455666555422222367899999999999999999998776 7889987543 33 5666654
No 113
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=35.35 E-value=50 Score=22.74 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHh--cCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI--NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~L--gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..++.+.+++.|+..+.. ...++...|++-+ |++...+.+-+..+ .+.|....
T Consensus 7 ~~~~md~~d~~IL~~L~~-~g~~s~~eLA~~l~~giS~~aVs~rL~~L-e~~GLV~~ 61 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHE-EGNGSPKELEDRDEIRISKSSVSRRLKKL-ADHDLLQP 61 (111)
T ss_dssp CCTTCCHHHHHHHHHHHH-HSCBCHHHHHTSTTCCSCHHHHHHHHHHH-HHTTSEEE
T ss_pred hhhhcCHHHHHHHHHHHH-cCCCCHHHHHHHHhcCCCHHHHHHHHHHH-HHCCCEEe
Confidence 345677888999998865 3589999999999 99999999998777 78888764
No 114
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=35.29 E-value=83 Score=21.28 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. ...++...|++.+|++...+-..+... .+.||..-
T Consensus 44 ~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L-e~~Glv~r 88 (150)
T 2rdp_A 44 QFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRM-ERNGLVAR 88 (150)
T ss_dssp HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHH-HHCCCeee
Confidence 4455666654 468999999999999999988888776 67899863
No 115
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=34.65 E-value=85 Score=23.38 Aligned_cols=61 Identities=15% Similarity=-0.047 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
.+.||..|..--=..=+.++...|++-||+|-.-+.+.+..+ ...|+-.-.. ++ |.+|.+.
T Consensus 22 ~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L-~~eGlv~~~~-~~-G~~V~~~ 82 (222)
T 3ihu_A 22 FFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRL-AAEGIVDLQR-HR-GAVIRRL 82 (222)
T ss_dssp HHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEECS-TT-CEEECCC
T ss_pred HHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEec-CC-CeEEecC
Confidence 334444444322222268999999999999999999998776 7889987543 33 4666654
No 116
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=34.64 E-value=82 Score=23.98 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhc---ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 75 EQAIQSFAIHVLSLTY---QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 75 ed~IR~~i~~vV~~ty---qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
.+.||..|. +..| +.++...|++-||+|-..+.+.+..+ ...|+-.-.. +. +.+|.+.
T Consensus 34 ~~~l~~~I~---~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L-~~eGlv~~~~-~~-G~~V~~~ 94 (239)
T 2hs5_A 34 AGILRDAII---DGTFRPGARLSEPDICAALDVSRNTVREAFQIL-IEDRLVAHEL-NR-GVFVRVP 94 (239)
T ss_dssp HHHHHHHHH---HTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECCC
T ss_pred HHHHHHHHH---cCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEeC-CC-eeEEeCC
Confidence 344555444 3445 57899999999999999999998776 7899987543 33 5666654
No 117
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=34.42 E-value=64 Score=22.14 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 42 ~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L-~~~Glv~r 87 (149)
T 4hbl_A 42 SQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRL-EQSGWVKR 87 (149)
T ss_dssp HHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHH-HHHTSEEC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEee
Confidence 34456666654 488999999999999999888888776 77899863
No 118
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=34.03 E-value=35 Score=25.84 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=46.2
Q ss_pred hhhhcCCCccccCchhHHHHH-HHHHHHHcCChHH-----HHHHHhhccchhhcccchHHHHHHHHHHHHHHhccccc-H
Q 031021 23 SLCLFLIPERVQMEDQFKTLI-VLSHYLETGRFRH-----FWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIP-R 95 (167)
Q Consensus 23 ~lc~~Ll~~~~~~~~~i~~i~-~L~~lLe~c~F~~-----FW~~l~~~~~~~~~i~gFed~IR~~i~~vV~~tyqsI~-~ 95 (167)
..|+.+|.+...-.-.|.+|+ .+..+|-..+-.. -- .-+...-.+|...+|..+-.--+.....-. .
T Consensus 91 ~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa------~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~e 164 (201)
T 3k9o_A 91 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA------NQYKQNPEMFKQTARLWAHVYAGAPVSSPEYT 164 (201)
T ss_dssp BBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHH------HHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred eeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHH------HHHHHCHHHHHHHHHHHHHHhcccccccchhH
Confidence 568887765543222344333 5555665544321 11 122223456666666655443322211100 2
Q ss_pred HHHHHHh--cCCchHHHHHHHHHhhhcCceee
Q 031021 96 TVLAEAI--NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 96 ~~L~~~L--gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+.+.++. |.+.++..+.+ +..+|.++
T Consensus 165 ekV~~l~~MGf~~~~a~~AL----~~~~wd~~ 192 (201)
T 3k9o_A 165 KKIENLCAMGFDRNAVIVAL----SSKSWDVE 192 (201)
T ss_dssp HHHHHHHTTTCCHHHHHHHH----HHTTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHH----HHcCCCHH
Confidence 2333333 77777766666 78899875
No 119
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.68 E-value=63 Score=26.52 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..=|+.|++.+. ....+++..|++.+|||...+-+.++++ .+.|+-.+
T Consensus 15 ~~n~~~il~~l~-~~~~~sr~~la~~~~ls~~tv~~~v~~L-~~~g~i~~ 62 (406)
T 1z6r_A 15 QTNAGAVYRLID-QLGPVSRIDLSRLAQLAPASITKIVHEM-LEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHH-SSCSCCHHHHHHHTTCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HhHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCcEEe
Confidence 444556777775 4688999999999999999988888777 66899876
No 120
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=33.59 E-value=67 Score=23.59 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..|...+...-+.++...|++.||+|...+..-++.+ ++.|..+.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L-~~~G~~I~ 68 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL-RSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH-HHHTCCCE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCeEE
Confidence 45677777755456999999999999999988888766 66787444
No 121
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=33.57 E-value=61 Score=22.94 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=33.4
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCC
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~ 140 (167)
..++...+++-+|++..-+.+.+..+ ++.|+-.... |. +-+....++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L-~~~Glv~s~r-G~-GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYL-KQAGFVYVNR-GP-GGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEEC-----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCcEEEcc-CC-CceEeCCCh
Confidence 35889999999999999999998777 8899965422 32 335554443
No 122
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.44 E-value=96 Score=20.63 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcc-cccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQ-KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyq-sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+...-. .++...|++.+|++...+-..+... .+.||-.-
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~L-e~~Gli~r 82 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRM-EIKKLLYR 82 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHH-HHCCCEEe
Confidence 4456666655422 7999999999999998888888776 77899863
No 123
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.91 E-value=95 Score=20.55 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 40 ~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L-~~~glv~r 84 (140)
T 2nnn_A 40 QWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERL-DKRGLIQR 84 (140)
T ss_dssp HHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHH-HHTTCEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 3455666643 458999999999999999988888776 77899863
No 124
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=32.81 E-value=74 Score=22.27 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
-.++..+...-..+....|++.+|++...+-..+... .+.||..
T Consensus 34 ~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~L-e~~GlV~ 77 (151)
T 4aik_A 34 WVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQL-EEKGLIT 77 (151)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHH-HhCCCeE
Confidence 3566677665566777899999999999888888776 7889986
No 125
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=32.81 E-value=67 Score=20.69 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHHh-cCCchHHHHHHHHH
Q 031021 79 QSFAIHVLSLTY---QKIPRTVLAEAI-NLKGLSLDKFLEHQ 116 (167)
Q Consensus 79 R~~i~~vV~~ty---qsI~~~~L~~~L-gl~~~~l~~~~~~~ 116 (167)
|..|+.+..... ..+..+.|++.. |++|.++...|.+.
T Consensus 6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eA 47 (88)
T 3vlf_B 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 47 (88)
T ss_dssp HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555665554333 356778888877 78888888887544
No 126
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.73 E-value=89 Score=19.31 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhc-ccccHHHHHHHh-----cCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTY-QKIPRTVLAEAI-----NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~ty-qsI~~~~L~~~L-----gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.-|..|+.++...- ..++...+++.| +++...+-..++.. .+.|+-..
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L-~~~Glv~~ 70 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF-DDAGIVTR 70 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH-HHCCCeEE
Confidence 36788999998765 689999999999 89888877777665 67898764
No 127
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=32.59 E-value=71 Score=21.20 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 34 ~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L-~~~gli~r 79 (139)
T 3bja_A 34 VQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRM-KRDGYVMT 79 (139)
T ss_dssp HHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHH-HHCCCeee
Confidence 34456666643 568999999999999998888888776 67899863
No 128
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.34 E-value=84 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.++..+.. ...++...|++.+|++...+-..++.. .+.||-.-
T Consensus 39 ~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~L-e~~glv~r 82 (142)
T 2fbi_A 39 WRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARL-ERDGIVRR 82 (142)
T ss_dssp HHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHH-HHCCCEEe
Confidence 345555543 457999999999999999888888776 78899863
No 129
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=32.30 E-value=78 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+..+ .+.||..-
T Consensus 47 ~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~L-e~~GlV~r 91 (168)
T 2nyx_A 47 QFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRL-VGAELIDR 91 (168)
T ss_dssp HHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEe
Confidence 3445566654 468999999999999999888888776 77899863
No 130
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=32.11 E-value=1e+02 Score=20.42 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 36 ~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L-~~~gli~r 80 (138)
T 1jgs_A 36 QFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRL-VCKGWVER 80 (138)
T ss_dssp HHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHH-HHCCCEEe
Confidence 3445555543 567899999999999999888888776 77899863
No 131
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=32.01 E-value=78 Score=20.61 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHhc--ccccHHHHHHHhcCCchHHHHHHHH
Q 031021 82 AIHVLSLTY--QKIPRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 82 i~~vV~~ty--qsI~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
++..|..-| ..++.+.||+.+|++...+...+++
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445555556 4899999999999999888877743
No 132
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=31.98 E-value=23 Score=21.77 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=17.8
Q ss_pred ccHHHHHHHhcCCchHHHHHH
Q 031021 93 IPRTVLAEAINLKGLSLDKFL 113 (167)
Q Consensus 93 I~~~~L~~~Lgl~~~~l~~~~ 113 (167)
++...++++||+|...+..|+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~ 23 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQ 23 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHH
Confidence 567889999999998887776
No 133
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=31.90 E-value=77 Score=22.28 Aligned_cols=51 Identities=8% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCC
Q 031021 86 LSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 86 V~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~ 140 (167)
++..+.. +...+|+-+|++..-+++.+..+ ++.|+-...- |+| -+...+.+
T Consensus 18 La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L-~~aGlv~s~r-G~G-Gy~Lar~p 68 (145)
T 1xd7_A 18 ISMDEKT-SSEIIADSVNTNPVVVRRMISLL-KKADILTSRA-GVP-GASLKKDP 68 (145)
T ss_dssp HHTCSCC-CHHHHHHHHTSCHHHHHHHHHHH-HHTTSEECCS-SSS-SCEESSCG
T ss_pred HHhCCCC-CHHHHHHHHCcCHHHHHHHHHHH-HHCCceEeec-CCC-CceecCCH
Confidence 3333445 89999999999999999998777 8899976433 222 34554433
No 134
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=31.65 E-value=71 Score=21.06 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHh-cccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 84 HVLSLT-YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 84 ~vV~~t-yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
..|..- -+.++.+.||+.+|++...+...+++. .|-+.
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G~s~ 52 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY---LGTVP 52 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH---TSSCH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH---HCcCH
Confidence 333443 356999999999999998888877433 26553
No 135
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=31.57 E-value=68 Score=24.05 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeC
Q 031021 91 QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLP 137 (167)
Q Consensus 91 qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p 137 (167)
+.+ +...|++-+|+|-..+.+.+..+ ...|+-.-.. |. |++|.+
T Consensus 29 ~~LPsE~eLa~~~gVSR~tVReAL~~L-~~eGlv~~~~-g~-G~~V~~ 73 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQRL-ARDGWLTIQH-GK-PTKVNN 73 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TE-EEEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCcEEEec-CC-CcEeeC
Confidence 578 69999999999999999998777 7889987543 43 567764
No 136
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=31.51 E-value=83 Score=21.44 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 43 ~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGL-ISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 3456666654 367999999999999998888888776 67898864
No 137
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=31.51 E-value=71 Score=21.54 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+-.|+..+.. .. ++...|++.+|++...+-..+... .+.||-.-
T Consensus 39 ~~~~iL~~l~~-~~-~t~~eLa~~l~~s~~tvs~~l~~L-~~~Glv~r 83 (146)
T 3tgn_A 39 TQEHILMLLSE-ES-LTNSELARRLNVSQAAVTKAIKSL-VKEGMLET 83 (146)
T ss_dssp HHHHHHHHHTT-CC-CCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEC
T ss_pred HHHHHHHHHHh-CC-CCHHHHHHHHCCCHHHHHHHHHHH-HHCCCeEe
Confidence 45667777764 34 999999999999999888888776 78899863
No 138
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=31.44 E-value=71 Score=22.09 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 81 FAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 81 ~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.++..+.. ...++...|++.+|++...+-..+... .+.||-.
T Consensus 54 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~ 95 (159)
T 3s2w_A 54 PFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKL-VDEGYVF 95 (159)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEE
Confidence 45555543 377999999999999999888888776 7889986
No 139
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=31.32 E-value=92 Score=21.10 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 42 ~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~L-e~~Glv~r 86 (152)
T 3bj6_A 42 QRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEV-QRAGLIER 86 (152)
T ss_dssp HHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCeee
Confidence 4455666653 468999999999999999888888776 77899864
No 140
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=31.29 E-value=40 Score=21.36 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.1
Q ss_pred cHHHHHHHhcCCchHHHHHHHH
Q 031021 94 PRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 94 ~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
.+..||..+||+..++..|..+
T Consensus 33 er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 33 EVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhccc
Confidence 4678999999999999999854
No 141
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=31.27 E-value=1e+02 Score=19.56 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=27.7
Q ss_pred cccHHHHHHHhcCCchH-HHHHHHHHhhhcCcee
Q 031021 92 KIPRTVLAEAINLKGLS-LDKFLEHQKANCGWIL 124 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~-l~~~~~~~~~~~GW~~ 124 (167)
.++...|++.+|++... +-..++.. .+.||-.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~L-e~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRL-IRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHH-HHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHH-HHCCCee
Confidence 79999999999999988 77777666 7789986
No 142
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=31.23 E-value=92 Score=21.21 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||..-
T Consensus 49 ~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~L-e~~glv~r 93 (153)
T 2pex_A 49 QYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRL-QAAGLVTR 93 (153)
T ss_dssp HHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHH-HHCCCEee
Confidence 3445566654 578999999999999999888888776 78899864
No 143
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=30.76 E-value=91 Score=20.79 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhc-ccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 78 IQSFAIHVLSLTY-QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 78 IR~~i~~vV~~ty-qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
-+-.++..+...= ..++...|++.+|++...+-..+... .+.||-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~L-e~~Gli~ 78 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNL-ERKKLIY 78 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHH-HHCCCEe
Confidence 3445666665432 48899999999999999888888776 7789986
No 144
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.64 E-value=68 Score=21.47 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=26.9
Q ss_pred HHHHHHHh-cccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 82 AIHVLSLT-YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 82 i~~vV~~t-yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+.+.|..- ...++.+.||+.+|++...+...+ ++.|-+.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~f----k~~G~s~ 51 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKL----REEETSY 51 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHH----HHTTCCH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHH----HHcCCCH
Confidence 33333333 357899999999999998887777 4446543
No 145
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.40 E-value=91 Score=20.19 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.5
Q ss_pred cccccHHHHHHHhcCCchHHHHHHHHHhhhcCc
Q 031021 90 YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 122 (167)
Q Consensus 90 yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW 122 (167)
++-.+....|+.||++...+...+....++.|=
T Consensus 42 ~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 42 EKGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 367788899999999999999988888777763
No 146
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.39 E-value=95 Score=20.89 Aligned_cols=44 Identities=2% Similarity=0.024 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 40 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-~~~Glv~r 83 (142)
T 3ech_A 40 VHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIREL-EGRNLVRR 83 (142)
T ss_dssp HHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHH-HHTTSEEC
T ss_pred HHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEee
Confidence 455555554 357999999999999998888888776 78899863
No 147
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=30.30 E-value=92 Score=20.48 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+..|-.|+..+. ...++...|++.+ |++...+-..+... .+.|+-..
T Consensus 12 ~~~~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~L-e~~GlI~r 60 (107)
T 2hzt_A 12 GGKWKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLREL-EADGVINR 60 (107)
T ss_dssp CSTTHHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCccHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHH-HHCCCEEE
Confidence 3445666777775 5789999999999 99999888888776 78899863
No 148
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.20 E-value=1.1e+02 Score=19.74 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCCch-HHHHHHHHHhhhcCcee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAINLKGL-SLDKFLEHQKANCGWIL 124 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~-~l~~~~~~~~~~~GW~~ 124 (167)
+++..|+..+. +-...+...||+.||++.. .+.+.+... .+.|...
T Consensus 11 ~~~~~IL~~Lk-~~g~~ta~eiA~~Lgit~~~aVr~hL~~L-e~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLF-NVSDSSALNLAKNIGLTKARDINAVLIDM-ERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHH-HTCCEEHHHHHHHHCGGGHHHHHHHHHHH-HHTTSEE
T ss_pred hHHHHHHHHHH-HcCCcCHHHHHHHcCCCcHHHHHHHHHHH-HHCCCEE
Confidence 68888888776 4467889999999999998 999998776 6667665
No 149
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=30.07 E-value=1e+02 Score=21.35 Aligned_cols=44 Identities=32% Similarity=0.371 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||..
T Consensus 48 q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~ 91 (162)
T 3k0l_A 48 QFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDL-LANGWIE 91 (162)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCcCeE
Confidence 4456666654 468999999999999999888888776 7889986
No 150
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.04 E-value=75 Score=18.25 Aligned_cols=34 Identities=3% Similarity=-0.048 Sum_probs=25.5
Q ss_pred cccccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 90 YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 90 yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
++-.+....|+.||++...+...+....++.|-.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 5566778889999998888888877776665543
No 151
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=29.86 E-value=1.1e+02 Score=23.18 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=25.9
Q ss_pred cHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 94 PRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 94 ~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
....|++.||++...+-..+..+ .+.||-.-
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~L-e~~GlV~r 56 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARM-ERDGLVVV 56 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEE
Confidence 34899999999998888888776 77899865
No 152
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=29.66 E-value=1.1e+02 Score=20.31 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..|-.|+..+.. ..++...|++.+ |++...+-..+... .+.||-.-
T Consensus 21 ~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~L-e~~GlI~r 68 (112)
T 1z7u_A 21 GKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREM-EKDGLVHR 68 (112)
T ss_dssp STTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHH-HHHTSEEE
T ss_pred CccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHH-HHCCCEEE
Confidence 3445567777763 789999999999 99999888888776 78899863
No 153
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=29.63 E-value=1.4e+02 Score=23.43 Aligned_cols=63 Identities=5% Similarity=-0.075 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHH-Hhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCC
Q 031021 75 EQAIQSFAIHVLS-LTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 75 ed~IR~~i~~vV~-~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~ 140 (167)
.+.|...+..-|. ..| ..+ +...|++-+|+|...+.+.+..+ .+.|+-.-.. |. +.+|.+...
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L-~~~G~i~~~~-g~-G~~V~~~~~ 98 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVL-MAEGLVEGRS-GS-GTYVRERPV 98 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEECC-C---EEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEec-Cc-eEEEecCCc
Confidence 3444554544443 355 578 79999999999999999998777 7899976433 44 567776544
No 154
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.61 E-value=75 Score=22.67 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
|.+.+.|++.+..- .+++...||+-||+|...+..-++.+ .+.|.-
T Consensus 2 D~~d~~il~~L~~~-~~~s~~~la~~lg~s~~tv~~rl~~L-~~~g~i 47 (162)
T 3i4p_A 2 DRLDRKILRILQED-STLAVADLAKKVGLSTTPCWRRIQKM-EEDGVI 47 (162)
T ss_dssp CHHHHHHHHHHTTC-SCSCHHHHHHHHTCCHHHHHHHHHHH-HHTTSS
T ss_pred CHHHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCe
Confidence 45667788877643 56899999999999999988888777 666753
No 155
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.58 E-value=1.1e+02 Score=20.72 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhccc-ccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 78 IQSFAIHVLSLTYQK-IPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 78 IR~~i~~vV~~tyqs-I~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.+..|+..+...-.. ++...|++.||++...+-..++.+ .+.|+-.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L-~~~GlV~ 73 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKL-HEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 466677777665555 999999999999999888888777 7889975
No 156
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=29.34 E-value=80 Score=25.43 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHc---CChHHHHHHHhhc-----cchhhcccchHHHHHHHHHHH
Q 031021 38 QFKTLIVLSHYLET---GRFRHFWDEAAKH-----RNIVEAVPGFEQAIQSFAIHV 85 (167)
Q Consensus 38 ~i~~i~~L~~lLe~---c~F~~FW~~l~~~-----~~~~~~i~gFed~IR~~i~~v 85 (167)
-++.|..|+..|.. .=+..|++.+... .-+...+..|.+.||.+.-..
T Consensus 102 lLQYIlELak~L~~dpr~~v~~FF~ki~~~~~~~~~~F~ddV~~~~~RIk~Ra~~~ 157 (265)
T 1us7_B 102 VMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLR 157 (265)
T ss_dssp HHHHHHHHHHHHSSCGGGTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777 7899999999653 234455667777777666544
No 157
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=29.26 E-value=88 Score=21.68 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 55 q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L-e~~Glv~r 99 (161)
T 3e6m_A 55 KLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQL-VDEGLAAR 99 (161)
T ss_dssp HHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 4456666654 368999999999999999888888776 77899863
No 158
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.13 E-value=86 Score=21.92 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHHHHHHh-cccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 79 QSFAIHVLSLT-YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 79 R~~i~~vV~~t-yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.-.|+..+... -..++...|++.+|++...+-..+..+ .+.||-.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~ 93 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRL-DDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHH-HHCCCEe
Confidence 44566666664 368999999999999998888888777 7789986
No 159
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=29.04 E-value=1.1e+02 Score=19.80 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=21.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHH
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEH 115 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~ 115 (167)
..++.+.||+.+|++...+...+++
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999888877743
No 160
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=28.71 E-value=12 Score=27.59 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
..++...||++||++...+-..+.++ ++.|+-.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~L-~~~G~I~ 195 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQEL-EREGYIE 195 (213)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCeEE
Confidence 36889999999999998888887766 7788853
No 161
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.56 E-value=2.8e+02 Score=23.72 Aligned_cols=83 Identities=10% Similarity=0.110 Sum_probs=54.9
Q ss_pred hhHHH-HHHHHHHHHcCChHHHHHHHhhccchh-------hcccchHHH-HHHHHHHH---HHHhc--ccccHHHHHHHh
Q 031021 37 DQFKT-LIVLSHYLETGRFRHFWDEAAKHRNIV-------EAVPGFEQA-IQSFAIHV---LSLTY--QKIPRTVLAEAI 102 (167)
Q Consensus 37 ~~i~~-i~~L~~lLe~c~F~~FW~~l~~~~~~~-------~~i~gFed~-IR~~i~~v---V~~ty--qsI~~~~L~~~L 102 (167)
+.+.. -..|.+...+.+..+|=+.++.+++.. ..+...... +|.-+-.+ ...+| ++|+.+.++.-|
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL 372 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVL 372 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHH
Confidence 56766 458999999999999999998773322 222222222 22222223 46678 899999999999
Q ss_pred cC---------------------CchHHHHHHHHHhhh
Q 031021 103 NL---------------------KGLSLDKFLEHQKAN 119 (167)
Q Consensus 103 gl---------------------~~~~l~~~~~~~~~~ 119 (167)
++ +.++++-.+...+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~ 410 (455)
T 3t5v_B 373 QLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINL 410 (455)
T ss_dssp HHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHH
T ss_pred hhccCccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 73 566777777666443
No 162
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=28.16 E-value=1.1e+02 Score=22.03 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH-hcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSL-TYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~-tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-+-.++..+.. ....++...|++.+|++...+-..+..+ .+.||-.-
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L-e~~GlV~r 89 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL-EKNGYVDV 89 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 44556666654 2568999999999999998888888776 78899863
No 163
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=28.06 E-value=1e+02 Score=20.81 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=30.3
Q ss_pred hcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 89 TYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 89 tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.-..++...+++.||++...+-..++.. .+.||-.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~L-e~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHL-EEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHH-HHCCCEEe
Confidence 4567899999999999999888888777 67799864
No 164
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=27.98 E-value=1.1e+02 Score=20.53 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 32 ~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~L-e~~gli~r 75 (144)
T 1lj9_A 32 YLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRL-EEQGFIYR 75 (144)
T ss_dssp HHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHH-HHCCCEEe
Confidence 345555543 357899999999999999888888776 67899863
No 165
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.90 E-value=94 Score=20.81 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 39 ~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L-~~~gli~r 83 (142)
T 2bv6_A 39 QFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRM-EQVDLIKR 83 (142)
T ss_dssp HHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHH-HHCCCEEe
Confidence 3445555543 457999999999999998888888776 67899863
No 166
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=27.42 E-value=1.8e+02 Score=21.04 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=36.1
Q ss_pred cccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCCC
Q 031021 92 KIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEF 141 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~~ 141 (167)
.++...+|+-+|++..-+++.+..+ ++.|+-.... |.++-+...+.++
T Consensus 44 ~~s~~eIA~~~~i~~~~l~kil~~L-~~aGlv~s~r-G~~GGy~Lar~p~ 91 (159)
T 3lwf_A 44 PISLRSIAQDKNLSEHYLEQLIGPL-RNAGIVKSIR-GAHGGYVLNGDPE 91 (159)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEEC-STTCEEEECSCTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH-HHCCeEEEec-CCCCceEecCCHH
Confidence 5899999999999999999998777 8899976433 3333455555444
No 167
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=27.39 E-value=76 Score=21.41 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhc--ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTY--QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~ty--qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. . ..++...|++.||++...+-..+..+ .+.||-.-
T Consensus 39 q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~r 85 (127)
T 2frh_A 39 EFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKIL-SQEDYFDK 85 (127)
T ss_dssp HHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHH-HHTTSSCC
T ss_pred HHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 3445666654 4 67999999999999998888888776 78899863
No 168
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=27.31 E-value=52 Score=26.10 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=44.0
Q ss_pred hhhhcCCCccccCchhHHHHH-HHHHHHHcCChHHHHHHHhhc--cchhhcccchHHHHHHHHHHHHHHhcccc----cH
Q 031021 23 SLCLFLIPERVQMEDQFKTLI-VLSHYLETGRFRHFWDEAAKH--RNIVEAVPGFEQAIQSFAIHVLSLTYQKI----PR 95 (167)
Q Consensus 23 ~lc~~Ll~~~~~~~~~i~~i~-~L~~lLe~c~F~~FW~~l~~~--~~~~~~i~gFed~IR~~i~~vV~~tyqsI----~~ 95 (167)
..|+.+|.+...-.-.|.+|+ .+-.+|-..+-..- ++.+ .-+...-..|...+|..+-.--+.....- -.
T Consensus 143 ~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~P---ln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~~v 219 (253)
T 3e46_A 143 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP---QDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 219 (253)
T ss_dssp BBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSC---SCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCHHHHHHH
T ss_pred eeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 568887765543222333333 55556655443110 0000 11222345566666655443222211110 11
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 96 TVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 96 ~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+.|.+| |.+.++....+ .+.||.++
T Consensus 220 ~~l~~m-gf~~~~~~~al----~~~nWd~~ 244 (253)
T 3e46_A 220 ENLCAA-GFDRNAVIVAL----SSKSWDVE 244 (253)
T ss_dssp HHHHHT-TCCHHHHHHHH----HHTTTCHH
T ss_pred HHHHHc-CCCHHHHHHHH----HHcCCCHH
Confidence 223333 77776666655 78899875
No 169
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.18 E-value=84 Score=21.36 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhc-ccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 79 QSFAIHVLSLTY-QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 79 R~~i~~vV~~ty-qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+-.++..+...- ..++...|++.+|++...+-..+... .+.||..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L-~~~Glv~ 88 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGL-EKKGYIE 88 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHH-HHTTSBC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHH-HHCCCEE
Confidence 345666665542 68999999999999998888888776 7889986
No 170
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.15 E-value=1.4e+02 Score=19.95 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||..-
T Consensus 33 q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-e~~Glv~r 77 (145)
T 3g3z_A 33 LFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTL-AGQGLIEW 77 (145)
T ss_dssp HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEee
Confidence 3455566643 456999999999999999888888776 77899863
No 171
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=27.05 E-value=63 Score=24.82 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred ccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 91 QKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 91 qsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+.+.+..||+.||+++..+...++.+ ++.|+-.-
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL-~e~GLV~~ 62 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKL-SHLDIIRS 62 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEE
Confidence 78999999999999999999998777 88999864
No 172
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=26.68 E-value=66 Score=19.78 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=13.4
Q ss_pred CCchHHHHHHHHHhhhcCceeec
Q 031021 104 LKGLSLDKFLEHQKANCGWILEG 126 (167)
Q Consensus 104 l~~~~l~~~~~~~~~~~GW~~~~ 126 (167)
++..++.+.+ ++.||....
T Consensus 5 ~~~~elik~L----~~~G~~~~r 23 (70)
T 1whz_A 5 PRPEEVARKL----RRLGFVERM 23 (70)
T ss_dssp CCHHHHHHHH----HHTTCEEEE
T ss_pred CCHHHHHHHH----HHCCCEEeC
Confidence 4556677776 788999753
No 173
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=26.47 E-value=40 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.2
Q ss_pred cCCchHHHHHHHHHhhhcCceee
Q 031021 103 NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 103 gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+++.+|+++ +.|+.+.||=-+
T Consensus 62 ~~s~~eLdk~-t~wLD~rgWwYe 83 (85)
T 2l48_A 62 PTSDAQLKAM-KEYLDRKGWWYE 83 (85)
T ss_dssp CCCHHHHHHH-HHHHHHTTCCEE
T ss_pred CCCHHHHHHH-HHHHhccCceEE
Confidence 4577888886 888899999653
No 174
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=26.45 E-value=90 Score=19.87 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=32.5
Q ss_pred HHHHHHHHhcccccHHHH----HHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 81 FAIHVLSLTYQKIPRTVL----AEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 81 ~i~~vV~~tyqsI~~~~L----~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.|+..+.. ...++...| ++.+|++...+-..+... .+.||-..
T Consensus 12 ~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~L-e~~gli~r 58 (99)
T 1tbx_A 12 IVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFL-IQEGFVKE 58 (99)
T ss_dssp HHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHCCCEEE
Confidence 45555543 467888888 899999998888888776 67899864
No 175
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=26.45 E-value=1.8e+02 Score=22.56 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 75 EQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 75 ed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
.-.++..+.+.+. .=+-.+.+.|+..+|.+.+++.+.+++. .+...|.+ |.+|-.|-
T Consensus 20 ~~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l---~~~~~D~~---G~Ivgyp~ 76 (220)
T 3f2g_A 20 TADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQA---TSTEYDKD---GNIIGYGL 76 (220)
T ss_dssp HHHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHC---TTCEECTT---SCEEESSE
T ss_pred chHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhC---CcEEECCC---CCEEEecC
Confidence 3347788888888 8889999999999999999999998654 26666643 45655543
No 176
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=26.18 E-value=1.3e+02 Score=20.71 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||..-
T Consensus 54 ~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~L-e~~Gli~r 98 (162)
T 3cjn_A 54 KMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGL-QADGLVRR 98 (162)
T ss_dssp HHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHH-HHCCCEEe
Confidence 3445555543 467999999999999999888888776 77899863
No 177
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=26.10 E-value=1e+02 Score=24.70 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCC
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQST 130 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~ 130 (167)
-+..|...+. .-..++...|++.||+|...+.+.++.. ++.|-.++...+.
T Consensus 6 r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L-~~~G~~i~~~~g~ 56 (321)
T 1bia_A 6 VPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTL-RDWGVDVFTVPGK 56 (321)
T ss_dssp HHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHH-HHTTCCCEEETTT
T ss_pred HHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHH-HhCCCcEEEecCC
Confidence 3566777774 5567999999999999999999998776 6788876543343
No 178
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=25.91 E-value=35 Score=21.38 Aligned_cols=18 Identities=17% Similarity=0.601 Sum_probs=13.5
Q ss_pred CCchHHHHHHHHHhhhcCceee
Q 031021 104 LKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 104 l~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..+++.++| +++||.+-
T Consensus 29 vds~eV~~YC----~~kGwIiP 46 (60)
T 1ng7_A 29 VDSQEVRDYC----EKKGWIVN 46 (60)
T ss_dssp HCCHHHHHHH----HHHTCCCC
T ss_pred CCCHHHHHHH----HHCCceec
Confidence 3457778888 77799983
No 179
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.86 E-value=64 Score=21.85 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 38 q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L-~~~Glv~r 82 (140)
T 3hsr_A 38 GYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKL-EKKDYVVR 82 (140)
T ss_dssp HHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHH-HHCCCeEe
Confidence 3455566643 578999999999999999888888776 78899863
No 180
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.84 E-value=96 Score=20.57 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
...+-+.-|+. +.++ ++-.+....|+.||++...+...+....++.|-.
T Consensus 32 ~~~Lt~re~~V-l~l~---~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEV-LRLF---AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHH-HHHH---HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHH-HHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 34455544443 3333 4677889999999999988888887777766643
No 181
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=25.12 E-value=1.9e+02 Score=22.08 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHH-HHhc---ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCC
Q 031021 76 QAIQSFAIHVL-SLTY---QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPP 138 (167)
Q Consensus 76 d~IR~~i~~vV-~~ty---qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~ 138 (167)
+.|...+.+-| +..| ..+ +...|++.+|+|..-+.+.+..+ ...|+-.-.. |. |++|.+.
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L-~~~G~i~~~~-g~-G~~V~~~ 77 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNL-VNEGLLYRLK-GR-GTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEECT-TS-CEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHH-HHCCcEEEeC-CC-eEEEeCC
Confidence 34444444433 3345 478 78999999999999999998776 7889987533 44 5677654
No 182
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.99 E-value=1.5e+02 Score=20.22 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 46 ~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~L-e~~Gli~r 90 (154)
T 2eth_A 46 ELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSL-EKRGLVVR 90 (154)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 4455666654 357999999999999998888888776 77899864
No 183
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.89 E-value=99 Score=20.94 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=20.2
Q ss_pred cccccHHHHHHHhcCCchHHHHHHH
Q 031021 90 YQKIPRTVLAEAINLKGLSLDKFLE 114 (167)
Q Consensus 90 yqsI~~~~L~~~Lgl~~~~l~~~~~ 114 (167)
-..++.+.||+.+|++...+...++
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3468999999999999887777774
No 184
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.88 E-value=1.3e+02 Score=18.75 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=35.2
Q ss_pred hhcccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCce
Q 031021 68 VEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWI 123 (167)
Q Consensus 68 ~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~ 123 (167)
...+..+-+.-|+. +.++ ++-.+...+|+.||++...+...+....++.|-.
T Consensus 16 ~~~~~~Lt~~e~~v-l~l~---~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 16 ERDVNQLTPRERDI-LKLI---AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp -CCGGGSCHHHHHH-HHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCCHHHHHH-HHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 33444555544433 3333 6778999999999999998888887776666543
No 185
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.86 E-value=57 Score=18.27 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=16.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 96 TVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 96 ~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..+.+..|.+.+....++ ..++|-++
T Consensus 10 ~~F~~iTg~~~~~A~~~L----~~~~wdle 35 (46)
T 1v92_A 10 REFVAVTGAEEDRARFFL----ESAGWDLQ 35 (46)
T ss_dssp HHHHHHTCCCHHHHHHHH----HHTTSCSH
T ss_pred HHHHHHhCcCHHHHHHHH----HHcCCCHH
Confidence 334455566666666666 77899875
No 186
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.75 E-value=1.4e+02 Score=20.14 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=30.3
Q ss_pred hcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 89 TYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 89 tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
....++...|++.||++...+-..+... .+.||-.-
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~L-e~~Glv~r 54 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKL-DKDEYLIY 54 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHH-HHTTSEEE
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEE
Confidence 3467999999999999999888888776 67899864
No 187
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=24.72 E-value=1.1e+02 Score=20.88 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.|+..+.. ...++...|++.+|++...+-..+... .+.||..-
T Consensus 45 ~~~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~L-e~~Glv~r 89 (155)
T 3cdh_A 45 EWRVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQM-DARGLVTR 89 (155)
T ss_dssp HHHHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 3456666643 467999999999999999888888776 77899863
No 188
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.22 E-value=1.6e+02 Score=19.76 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.++..+. ....++...|++.+|++...+-..+... .+.||-.-
T Consensus 43 ~~iL~~l~-~~~~~t~~ela~~l~~~~~tvs~~l~~L-e~~Glv~r 86 (148)
T 3nrv_A 43 WRIISVLS-SASDCSVQKISDILGLDKAAVSRTVKKL-EEKKYIEV 86 (148)
T ss_dssp HHHHHHHH-HSSSBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEC
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEe
Confidence 34555554 3458999999999999999888888777 67799863
No 189
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=23.77 E-value=39 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=23.6
Q ss_pred cHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 94 PRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 94 ~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
+.+.|.+..|++.+..++.+... ++.||-.
T Consensus 38 ~~~eL~~i~gise~kA~~ii~aA-r~~~w~~ 67 (70)
T 1wcn_A 38 GIDDLADIEGLTDEKAGALIMAA-RNICWFG 67 (70)
T ss_dssp CHHHHHTSSSCCHHHHHHHHHHH-HHHHTTC
T ss_pred CHHHHHHccCCCHHHHHHHHHHH-HHccCcc
Confidence 77889999999999988888665 3358963
No 190
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.32 E-value=1.8e+02 Score=19.85 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccc-cHHHHHHHhcCCchHHHHHHHHHhhhcCceeeccCCCceEEEeCCCC
Q 031021 91 QKI-PRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNE 140 (167)
Q Consensus 91 qsI-~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~~~~~~~~~vv~p~n~ 140 (167)
..+ +...|++-||+|..-+.+.+..+ ...|+-.-.. |. |.+|.+..+
T Consensus 36 ~~LPser~La~~~gVSr~tVReAl~~L-~~eGlv~~~~-g~-G~~V~~~~~ 83 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVSKAYQEL-ERQEVIITVK-GK-GTFIANQTD 83 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEEET-TT-EEEECCCSS
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHH-HHCCcEEEEc-Cc-EEEEeCCch
Confidence 467 67789999999999999998776 7899987543 43 567765443
No 191
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=23.10 E-value=1.4e+02 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=26.9
Q ss_pred ccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 93 IPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 93 I~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
++...||+.+|++...+...+..+ .+.|+-.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~L-e~kGlI~ 82 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRL-LQKGMIA 82 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHH-HHTTSSE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEE
Confidence 899999999999999999999877 5677764
No 192
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.00 E-value=74 Score=17.08 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 95 RTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 95 ~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..|.+| |.+.+...+.+ ...||-++
T Consensus 8 i~~L~~m-Gf~~~~a~~AL----~~~~~n~e 33 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQAL----DAANGDLD 33 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHH----HHTTTCHH
T ss_pred HHHHHHc-CCCHHHHHHHH----HHcCCCHH
Confidence 4556776 88877666665 66677554
No 193
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=22.61 E-value=1.5e+02 Score=19.83 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+-.++..+... .. +...|++.+|++...+-..+... .+.||-.-
T Consensus 39 ~~~iL~~l~~~-~~-~~~~la~~l~~~~~tvs~~l~~L-e~~Glv~r 82 (144)
T 3f3x_A 39 DFSILKATSEE-PR-SMVYLANRYFVTQSAITAAVDKL-EAKGLVRR 82 (144)
T ss_dssp HHHHHHHHHHS-CE-EHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHHC-CC-CHHHHHHHHCCChhHHHHHHHHH-HHCCCEEe
Confidence 34566666543 33 89999999999999888888777 67799863
No 194
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.14 E-value=1.3e+02 Score=17.71 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCc
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 122 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW 122 (167)
+..+.+.-|+ |+..+ ++..+...+|+.||++...+...+....++.|-
T Consensus 9 ~~~L~~~e~~-il~~~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKRERE-VFELL---VQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHH-HHHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHH-HHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3444444443 33333 566788999999999998888888766655553
No 195
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=22.05 E-value=81 Score=20.48 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
...+.+..|..|+..+.. ....+...+++.||++...+-..+... .+. +..
T Consensus 21 ~~aL~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~L-~~~-lv~ 71 (99)
T 2zkz_A 21 LKTMAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCKM-RGK-VLK 71 (99)
T ss_dssp HHHHCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHH-BTT-TBE
T ss_pred HHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHH-HHH-hhh
Confidence 334556788888854432 367899999999999999888888766 445 654
No 196
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.03 E-value=1.8e+02 Score=20.24 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 76 QAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 76 d~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..|-.|+..+. ...++...|++.||++...+-+.++.+ .+.|+-.-
T Consensus 23 ~~w~l~IL~~L~--~g~~~~~eLa~~lgis~~tls~~L~~L-e~~GlI~r 69 (146)
T 2f2e_A 23 DGWSMLIVRDAF--EGLTRFGEFQKSLGLAKNILAARLRNL-VEHGVMVA 69 (146)
T ss_dssp SSSHHHHHHHHH--TTCCSHHHHHHHHCCCHHHHHHHHHHH-HHTTSEEE
T ss_pred CchHHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHHHH-HHCCCEEE
Confidence 445556776664 577899999999999999988888776 78899763
No 197
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.01 E-value=1.4e+02 Score=23.09 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 78 IQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 78 IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
.+..|+..+. ....++...|++.||++...+-..++.+ .+.||-..
T Consensus 153 ~~~~IL~~L~-~~~~~s~~eLA~~lglsksTv~r~L~~L-e~~GlV~r 198 (244)
T 2wte_A 153 EEMKLLNVLY-ETKGTGITELAKMLDKSEKTLINKIAEL-KKFGILTQ 198 (244)
T ss_dssp HHHHHHHHHH-HHTCBCHHHHHHHHTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHH-HHCCCEEE
Confidence 4566777765 4578999999999999999888888776 78899864
No 198
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=21.79 E-value=42 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 100 EAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 100 ~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+|| .|+++++.+.|+-. -++||...
T Consensus 14 SyLP~Lt~eqI~kQV~yl-l~qGw~~~ 39 (118)
T 3zxw_B 14 SYLPPLSDAQIARQIQYA-IDQGYHPC 39 (118)
T ss_dssp CCSCCCCHHHHHHHHHHH-HHHTCEEE
T ss_pred ccCCCCCHHHHHHHHHHH-HhCCCeeE
Confidence 455 78999998888766 67999984
No 199
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=21.78 E-value=76 Score=20.05 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCchHHHHHH
Q 031021 95 RTVLAEAINLKGLSLDKFL 113 (167)
Q Consensus 95 ~~~L~~~Lgl~~~~l~~~~ 113 (167)
...||++||++...+-+|+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~ 31 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWL 31 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 7889999999887777765
No 200
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=21.61 E-value=1.4e+02 Score=20.56 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=33.3
Q ss_pred HHHHHHHHh-cccccHHHHHHHhcCCchHHHHHHHHHhhhcCcee
Q 031021 81 FAIHVLSLT-YQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWIL 124 (167)
Q Consensus 81 ~i~~vV~~t-yqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~ 124 (167)
.++.++... ...++...|++.+|++...+-..+... .+.||..
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~L-e~~Glv~ 82 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRL-VRSGLVA 82 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHH-HHTTSEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHH-HhCCCEE
Confidence 455555433 345899999999999998888888776 7889986
No 201
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.21 E-value=79 Score=20.38 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.5
Q ss_pred cHHHHHHHhcCCchHHHHHHHHH
Q 031021 94 PRTVLAEAINLKGLSLDKFLEHQ 116 (167)
Q Consensus 94 ~~~~L~~~Lgl~~~~l~~~~~~~ 116 (167)
.++.|+..|||+...+..|.++.
T Consensus 37 ~r~~La~~tGL~~~~IqVWFQNr 59 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTIIKFFQNQ 59 (71)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhhccc
Confidence 46889999999999999998543
No 202
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.15 E-value=1.5e+02 Score=19.30 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 77 AIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 77 ~IR~~i~~vV~~tyqsI~~~~L~~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..|-.|+..+. ...++...|++.+ |++...+-..+... .+.||-.-
T Consensus 25 ~~~~~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~L-e~~GlV~r 71 (107)
T 2fsw_A 25 KWTLLIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFL-CGKGLIKK 71 (107)
T ss_dssp SSHHHHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred ccHHHHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHH-HHCCCEEE
Confidence 34455666664 5678999999999 59999888888776 78899863
No 203
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=20.83 E-value=53 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 100 EAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 100 ~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+|| .|+++++.+.|+-. -++||...
T Consensus 15 SyLP~lt~eqI~kQI~Yl-l~qGw~p~ 40 (109)
T 1rbl_M 15 SYLPPLSDRQIAAQIEYM-IEQGFHPL 40 (109)
T ss_dssp TTSSCCCHHHHHHHHHHH-HHHTCEEE
T ss_pred ccCCCCCHHHHHHHHHHH-HHCCCEEE
Confidence 345 78999999988766 57899984
No 204
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=20.72 E-value=59 Score=22.67 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=19.6
Q ss_pred HHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 100 EAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 100 ~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+|| .|+++++.+.|+-. -++||...
T Consensus 17 SyLP~lt~eqI~kQV~Yl-l~qGw~p~ 42 (110)
T 1svd_M 17 SYLPPMNAERIRAQIKYA-IAQGWSPG 42 (110)
T ss_dssp TTSCCCCHHHHHHHHHHH-HHTTCEEE
T ss_pred ccCCCCCHHHHHHHHHHH-HHCCCeeE
Confidence 355 78999999988766 57899974
No 205
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=20.67 E-value=1.5e+02 Score=19.34 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhc----CCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAIN----LKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lg----l~~~~l~~~~~~~~~~~GW~~~ 125 (167)
+..|+..+.. ...++...|++.+| ++...+-..+... .+.||-.-
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L-~~~Glv~r 60 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRL-YKKGFIDR 60 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHTSEEE
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH-HHCCCeEE
Confidence 4456666665 67899999999998 7787877887766 78899864
No 206
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=20.62 E-value=1.4e+02 Score=19.97 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 80 SFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 80 ~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
-.++..+.. ...++...|++.+|++...+-..+... .+.||-.-
T Consensus 43 ~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L-~~~glv~r 86 (147)
T 1z91_A 43 YLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRM-EQQGLITR 86 (147)
T ss_dssp HHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHH-HHHTSEEC
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHH-HHCCCEEe
Confidence 345555554 357899999999999999888888776 67799864
No 207
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=20.47 E-value=80 Score=21.10 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=40.6
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHHh-cCCchHHHHHHHHHhhhcCceee
Q 031021 71 VPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 71 i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~L-gl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
..-+.+.-|-.|+..+...-.+++...|++.+ |++...+-+.+... .+.|+-.-
T Consensus 21 l~~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~L-e~~GlV~r 75 (111)
T 3df8_A 21 LHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDL-IDSGLVER 75 (111)
T ss_dssp HHHHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHH-HHTTSEEE
T ss_pred HHHHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHH-HHCCCEEE
Confidence 34455667888888886333335599999999 99999988888776 78898764
No 208
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.36 E-value=55 Score=17.75 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.9
Q ss_pred cccHHHHHHHhcCCchHHHHHH
Q 031021 92 KIPRTVLAEAINLKGLSLDKFL 113 (167)
Q Consensus 92 sI~~~~L~~~Lgl~~~~l~~~~ 113 (167)
..+...+++.+|++...+..++
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999987766665
No 209
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=20.30 E-value=2e+02 Score=19.04 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHH
Q 031021 74 FEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFL 113 (167)
Q Consensus 74 Fed~IR~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~ 113 (167)
+.+.=+..|...+.... ++...+++.+|+|...+-..+
T Consensus 4 ~~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 4 YIKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp THHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHH
Confidence 33334556666666544 778888888888776655555
No 210
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=20.26 E-value=2e+02 Score=21.14 Aligned_cols=64 Identities=9% Similarity=0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHcCChHHHHHHHhhccchhhcccchHHHHHHHHHHHHHHhcccccHHHHHHHh-cCCchHHH
Q 031021 43 IVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLD 110 (167)
Q Consensus 43 ~~L~~lLe~c~F~~FW~~l~~~~~~~~~i~gFed~IR~~i~~vV~~tyqsI~~~~L~~~L-gl~~~~l~ 110 (167)
-++.++|.+.++.+-=+.+-+++.+-... +.++.....+|-...++|....+..++ +|+.++.+
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~pP~~~~~----~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D 105 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSYVPYGNDV----QEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEID 105 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSCCCSCSC----HHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHH
Confidence 57788999999999777776766665543 678888888888888899988888888 47766544
No 211
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=20.10 E-value=2.3e+02 Score=19.87 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhcCCchHHHHHHHHHhhhcCceee
Q 031021 79 QSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILE 125 (167)
Q Consensus 79 R~~i~~vV~~tyqsI~~~~L~~~Lgl~~~~l~~~~~~~~~~~GW~~~ 125 (167)
|-+++++|.. .+=++..|.+..|++.-.++..+..+ ...|=.++
T Consensus 22 RLyla~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL-~elgI~~~ 65 (117)
T 3ke2_A 22 KLYLAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASF-ADIGIEVE 65 (117)
T ss_dssp HHHHHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTG-GGGTCEEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHh-hhCCeEEE
Confidence 5689999999 66699999999999998888888666 46666654
Done!