Query 031022
Match_columns 167
No_of_seqs 127 out of 1109
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.7E-42 3.6E-47 272.3 18.3 152 2-153 2-153 (212)
2 cd03759 proteasome_beta_type_3 100.0 2.8E-41 6E-46 262.2 17.9 147 6-152 1-148 (195)
3 cd03760 proteasome_beta_type_4 100.0 3E-40 6.5E-45 256.7 18.0 148 7-154 1-151 (197)
4 cd03761 proteasome_beta_type_5 100.0 9.8E-40 2.1E-44 252.2 18.5 142 9-151 1-142 (188)
5 COG0638 PRE1 20S proteasome, a 100.0 1.3E-39 2.8E-44 259.8 18.7 147 5-152 27-175 (236)
6 cd03758 proteasome_beta_type_2 100.0 5.1E-39 1.1E-43 249.2 18.6 145 9-153 2-148 (193)
7 TIGR03634 arc_protsome_B prote 100.0 7.8E-39 1.7E-43 246.1 18.5 144 8-152 1-144 (185)
8 cd03754 proteasome_alpha_type_ 100.0 7.3E-39 1.6E-43 252.2 17.0 150 4-154 25-178 (215)
9 cd03764 proteasome_beta_archea 100.0 3.8E-38 8.2E-43 243.0 18.3 143 9-152 1-143 (188)
10 PTZ00488 Proteasome subunit be 100.0 4.2E-38 9.1E-43 252.5 19.0 147 4-151 35-181 (247)
11 cd03752 proteasome_alpha_type_ 100.0 4.3E-38 9.3E-43 247.3 18.4 148 5-152 26-177 (213)
12 cd03755 proteasome_alpha_type_ 100.0 4.7E-38 1E-42 246.2 18.2 148 5-153 24-175 (207)
13 TIGR03690 20S_bact_beta protea 100.0 5.5E-38 1.2E-42 247.9 18.4 147 7-153 1-152 (219)
14 cd03750 proteasome_alpha_type_ 100.0 1.1E-37 2.3E-42 247.3 18.2 147 5-153 24-174 (227)
15 cd03751 proteasome_alpha_type_ 100.0 1.6E-37 3.4E-42 244.2 17.8 147 5-153 27-177 (212)
16 cd03762 proteasome_beta_type_6 100.0 3E-37 6.6E-42 237.9 18.3 144 9-153 1-144 (188)
17 cd03749 proteasome_alpha_type_ 100.0 4.7E-37 1E-41 241.3 18.4 145 5-153 24-172 (211)
18 cd01912 proteasome_beta protea 100.0 7.8E-37 1.7E-41 235.3 18.4 145 9-153 1-145 (189)
19 KOG0179 20S proteasome, regula 100.0 1.9E-37 4.2E-42 236.9 14.6 163 2-167 23-185 (235)
20 cd03763 proteasome_beta_type_7 100.0 9.9E-37 2.1E-41 235.4 18.5 142 9-152 1-142 (189)
21 PTZ00246 proteasome subunit al 100.0 7.7E-37 1.7E-41 246.0 18.5 147 5-151 28-178 (253)
22 cd01906 proteasome_protease_Hs 100.0 3.8E-36 8.3E-41 229.5 18.9 145 9-153 1-147 (182)
23 cd01911 proteasome_alpha prote 100.0 4E-36 8.7E-41 235.4 17.7 148 5-153 24-175 (209)
24 PRK03996 proteasome subunit al 100.0 5.5E-36 1.2E-40 239.3 17.8 145 5-151 33-181 (241)
25 cd03756 proteasome_alpha_arche 100.0 6.8E-36 1.5E-40 234.5 17.9 146 5-152 25-174 (211)
26 TIGR03633 arc_protsome_A prote 100.0 8.6E-36 1.9E-40 235.8 18.3 145 5-151 26-174 (224)
27 KOG0176 20S proteasome, regula 100.0 1.8E-36 3.8E-41 230.1 13.0 147 5-153 31-186 (241)
28 PF00227 Proteasome: Proteasom 100.0 1.1E-35 2.3E-40 228.5 17.4 147 6-152 2-154 (190)
29 cd03753 proteasome_alpha_type_ 100.0 1.8E-35 3.8E-40 232.4 18.0 146 5-152 24-178 (213)
30 cd03765 proteasome_beta_bacter 100.0 1E-34 2.2E-39 231.3 17.8 142 10-153 2-162 (236)
31 KOG0184 20S proteasome, regula 100.0 3.6E-35 7.9E-40 226.2 14.6 148 4-153 30-181 (254)
32 TIGR03691 20S_bact_alpha prote 100.0 6E-34 1.3E-38 226.1 17.2 141 5-153 24-170 (228)
33 KOG0178 20S proteasome, regula 100.0 3E-33 6.5E-38 214.2 12.3 146 5-150 28-177 (249)
34 KOG0177 20S proteasome, regula 100.0 1.7E-32 3.7E-37 206.8 12.5 145 9-153 2-148 (200)
35 KOG0175 20S proteasome, regula 100.0 3.4E-31 7.4E-36 207.9 12.5 145 5-150 68-212 (285)
36 KOG0183 20S proteasome, regula 100.0 1.7E-31 3.8E-36 204.9 10.3 145 5-150 27-175 (249)
37 KOG0181 20S proteasome, regula 100.0 5.1E-31 1.1E-35 199.9 10.5 149 4-154 28-180 (233)
38 KOG0180 20S proteasome, regula 100.0 5E-29 1.1E-33 185.8 13.7 152 1-152 1-153 (204)
39 cd01901 Ntn_hydrolase The Ntn 100.0 1.2E-27 2.5E-32 177.1 18.8 145 9-154 1-147 (164)
40 cd01913 protease_HslV Protease 100.0 3.4E-28 7.3E-33 184.8 15.3 134 9-153 1-138 (171)
41 PRK05456 ATP-dependent proteas 100.0 6.1E-28 1.3E-32 184.1 16.3 135 8-153 1-139 (172)
42 KOG0863 20S proteasome, regula 100.0 7.8E-28 1.7E-32 186.6 13.3 142 5-150 29-174 (264)
43 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.6E-27 3.6E-32 181.1 14.7 133 9-152 1-137 (171)
44 KOG0174 20S proteasome, regula 100.0 6.1E-28 1.3E-32 183.0 11.7 145 5-150 16-160 (224)
45 KOG0182 20S proteasome, regula 100.0 2.8E-27 6E-32 181.6 14.5 143 6-149 34-180 (246)
46 KOG0185 20S proteasome, regula 100.0 7.2E-28 1.6E-32 187.1 10.6 147 4-150 37-186 (256)
47 KOG0173 20S proteasome, regula 99.9 4.4E-26 9.6E-31 178.7 12.0 145 4-150 33-177 (271)
48 COG5405 HslV ATP-dependent pro 99.3 1.1E-11 2.3E-16 92.3 8.0 138 6-153 2-142 (178)
49 COG3484 Predicted proteasome-t 97.7 0.00046 1E-08 53.7 9.9 142 9-152 2-162 (255)
50 PF09894 DUF2121: Uncharacteri 71.0 3.2 6.9E-05 32.3 2.0 19 9-27 2-20 (194)
51 COG4079 Uncharacterized protei 68.7 6.3 0.00014 31.9 3.3 86 9-96 2-160 (293)
52 KOG1523 Actin-related protein 51.0 17 0.00036 30.7 3.0 50 106-157 262-313 (361)
53 COG4537 ComGC Competence prote 34.7 79 0.0017 22.1 3.9 27 61-87 50-77 (107)
54 PF04539 Sigma70_r3: Sigma-70 31.4 90 0.0019 19.7 3.7 31 64-94 3-33 (78)
55 PF03544 TonB_C: Gram-negative 31.2 80 0.0017 19.7 3.4 43 120-164 21-64 (79)
56 COG0282 ackA Acetate kinase [E 26.5 71 0.0015 27.7 3.0 60 49-115 271-332 (396)
57 PRK11508 sulfur transfer prote 26.1 1.7E+02 0.0037 20.6 4.5 36 56-95 39-74 (109)
58 PF14593 PH_3: PH domain; PDB: 26.0 66 0.0014 22.4 2.4 15 117-131 37-51 (104)
59 COG2096 cob(I)alamin adenosylt 25.8 1.5E+02 0.0033 22.9 4.5 54 44-97 106-162 (184)
60 TIGR00636 PduO_Nterm ATP:cob(I 25.7 1.5E+02 0.0032 22.5 4.5 54 44-97 98-154 (171)
61 PF01242 PTPS: 6-pyruvoyl tetr 24.3 1.4E+02 0.003 20.9 3.8 45 54-98 43-97 (123)
62 COG4728 Uncharacterized protei 23.3 89 0.0019 22.0 2.5 38 42-79 10-50 (124)
63 PRK07105 pyridoxamine kinase; 23.1 73 0.0016 25.6 2.5 28 38-65 3-30 (284)
64 TIGR03342 dsrC_tusE_dsvC sulfu 21.0 2.5E+02 0.0054 19.7 4.5 36 56-95 38-73 (108)
65 PF01726 LexA_DNA_bind: LexA D 20.9 1.7E+02 0.0038 18.3 3.4 21 72-92 16-36 (65)
66 PF01923 Cob_adeno_trans: Coba 20.8 1.8E+02 0.004 21.5 4.1 37 60-96 120-156 (163)
67 cd01262 PH_PDK1 3-Phosphoinosi 20.5 74 0.0016 21.6 1.7 14 117-130 25-38 (89)
68 COG4990 Uncharacterized protei 20.2 75 0.0016 24.7 1.8 19 107-128 151-169 (195)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=272.33 Aligned_cols=152 Identities=30% Similarity=0.429 Sum_probs=146.7
Q ss_pred CccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCC
Q 031022 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (167)
Q Consensus 2 ~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (167)
+||.++|+|+|||+++||||||+|++.+.+.++..++.+||++|+++++++++|..+|++.+++++|.+++.|++++|++
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 79999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 82 ~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++++.+|+++++++|++|.+||+|++||||||++++|+||++||+|++.+++++|+|+|+..++++||+..+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 153 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVG 153 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHH
Confidence 999999999999999988889999999999997778999999999999999999999999999999998754
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-41 Score=262.20 Aligned_cols=147 Identities=59% Similarity=0.948 Sum_probs=139.5
Q ss_pred cCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 031022 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (167)
Q Consensus 6 ~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~ 85 (167)
.+|+|+|||+++||||||+|++.+.+..+.+++.+||++|++|++++++|..+|++.+++++|.+++.|+++++.+|+++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999988777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC-eEEEeeCCcchhhHHhhhc
Q 031022 86 TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY-TSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 86 ~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~ld~~~ 152 (167)
.+|+++++++|++|.+||+|++||||||++++|+||++||+|++..+. ++|+|+|++.++++||+..
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~ 148 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW 148 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc
Confidence 999999999999888999999999999987789999999999998887 8899999999999999663
No 3
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-40 Score=256.70 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=139.4
Q ss_pred CCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 031022 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHK-LYQLREERDMKPE 85 (167)
Q Consensus 7 ~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~g~~~~~~ 85 (167)
+|+|+|||+++||||||+|+|++.+.++.+++.+|||+|+++++++++|..+|++.+++++|.+++ .|+++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998899999999999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCc
Q 031022 86 TFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 86 ~la~~i~~~l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
.+|+++++++|++| +|||+|++|+||||++++|+||++||+|++.+++++|+|+|+..++++||+..+.
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 151 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEK 151 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCC
Confidence 99999999999886 7999999999999976789999999999999999999999999999999976543
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-40 Score=252.21 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=137.4
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|++.+.+.++.+++.+|||+|++|++++++|..+|++.|++++|.+++.|+++++++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998889889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+++++++|.+|..||+|++||||||+ .||+||++||+|++.+++++|+|+|+..++++||+.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~ 142 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSG 142 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhc
Confidence 99999999998889999999999996 589999999999999999999999999999999965
No 5
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=259.84 Aligned_cols=147 Identities=27% Similarity=0.359 Sum_probs=141.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
...|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+||++|+++|+.+|++.+++++|.+++.|++.++++|++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC--CCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~r~--rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|+++++++|.++. |||+|++||||+|+ ++|+||++||+|++.++++.|+|+|+..++++|++.+
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y 175 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEY 175 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhc
Confidence 9999999999998876 99999999999998 7899999999999999999999999999999999775
No 6
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-39 Score=249.22 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=136.8
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+++++|.+++.|+++++++++++.+|
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~-r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+ | .|||++++||||||++++|+||++||+|++.+++++|+|+|+..++++|++..+
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~ 148 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK 148 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC
Confidence 9999999653 3 379999999999997678999999999999999999999999999999986643
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=7.8e-39 Score=246.11 Aligned_cols=144 Identities=24% Similarity=0.370 Sum_probs=138.8
Q ss_pred CceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 8 G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
|+|+|||+|+||||||+|++.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 88 a~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
|+++++++|.+++|||+|++||||||++ ||+||++||+|++.+++++++|+|+..++++||...
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 144 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY 144 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC
Confidence 9999999998889999999999999975 799999999999999999999999999999999653
No 8
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-39 Score=252.21 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=137.4
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
+.++|+|+|||+++||||||+|+|.+.+ ++..+..+||++|+++++|++||+.+|++.+++++|.+++.|+++++++++
T Consensus 25 ~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 103 (215)
T cd03754 25 VKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMP 103 (215)
T ss_pred HhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4457899999999999999999999864 555568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCc
Q 031022 84 PETFASLVSAL--LYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 84 ~~~la~~i~~~--l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
++.+|++++++ +|+++ .|||+|++|+||||+++||+||++||+|++.+++++|+|+|+..++++||+..+.
T Consensus 104 v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~ 178 (215)
T cd03754 104 VDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKK 178 (215)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhcc
Confidence 99999999997 46654 5899999999999976789999999999999999999999999999999976443
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-38 Score=242.95 Aligned_cols=143 Identities=24% Similarity=0.389 Sum_probs=138.1
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.+.+|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+++++++|.+++|||+|++|+||||+ ++|+||++||+|++.+++++|+|+|+..++++||+..
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~ 143 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY 143 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC
Confidence 99999999988999999999999997 5899999999999999999999999999999999653
No 10
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.2e-38 Score=252.54 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=139.0
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
+..+|+|+|||+++||||||+|++.+.+.++.+++.+||++|+++++++++|..+|++.+++++|.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45679999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
++.+|++|++++|.+|..|+.+++||||||++ ||+||++||+|++.+++++|+|+|+..++++||+.
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~-gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~ 181 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAG 181 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC-CCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhc
Confidence 99999999999998875567777899999964 79999999999999999999999999999999966
No 11
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-38 Score=247.33 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=138.4
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+|+||||||+|++.+.+.++.+++.+||++|+++++++++|..+|++.+.+++|.+++.|+++++++|++
T Consensus 26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v 105 (213)
T cd03752 26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPV 105 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999998877777799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhc--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALL--YEK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l--~~~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|++++.++ |++ +.|||+|++|+||||++.||+||.+||+|++.+++++|+|+|+..++++||+..
T Consensus 106 ~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y 177 (213)
T cd03752 106 EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDY 177 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhc
Confidence 99999999986 443 368999999999999766899999999999999999999999999999999743
No 12
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.7e-38 Score=246.16 Aligned_cols=148 Identities=17% Similarity=0.280 Sum_probs=137.7
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+. .++.+++.+||++|+++++++++|..+|++.+.+++|.+++.|+++++++|++
T Consensus 24 v~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (207)
T cd03755 24 VRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV 102 (207)
T ss_pred HHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999998765 46767789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l--~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+++++++++ |+++ .|||+|++||||||++++|+||++||+|++.+++++|+|+|+..++++||+..+
T Consensus 103 ~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~ 175 (207)
T cd03755 103 EYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYK 175 (207)
T ss_pred HHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhcc
Confidence 99999999999 5554 789999999999997678999999999999999999999999999999997643
No 13
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5.5e-38 Score=247.86 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=137.5
Q ss_pred CCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 031022 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (167)
Q Consensus 7 ~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~ 86 (167)
+|+|+|||+++||||||+|++.+.+.++.+++.+||++|+++++|+++|..+|++.+++++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---cCCCcceEEEEEEEcCC-CCcEEEEECCCC-ceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 87 FASLVSALLYEK---RFGPYFCQPVIAGLSDE-DKPFICTMDSIG-AKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 87 la~~i~~~l~~~---r~rP~~v~~ivaG~D~~-~gp~Ly~id~~G-~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+|+++++++|.+ .+|||+|++||||||++ ++|+||++||+| ++..++++|+|+|+..++++|++..+
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~ 152 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS 152 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC
Confidence 999999999765 37999999999999964 689999999999 57778999999999999999996543
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=247.30 Aligned_cols=147 Identities=16% Similarity=0.245 Sum_probs=137.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++++|+++++
T Consensus 24 v~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 102 (227)
T cd03750 24 VSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPV 102 (227)
T ss_pred HHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4689999999999999999999998 577888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l--~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++ |+++ .|||+|++||||||++ ||+||++||+|++.+++++|+|+|+..++++|+...+
T Consensus 103 ~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 174 (227)
T cd03750 103 SQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYN 174 (227)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhcc
Confidence 99999999998 4444 6999999999999965 8999999999999999999999999999999996544
No 15
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-37 Score=244.21 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=135.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++++++|..+|++.+++++|.+++.|++++++++++
T Consensus 27 ~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v 105 (212)
T cd03751 27 VENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPV 105 (212)
T ss_pred HhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47899999999999999999999976 56666789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~----r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|++++++++.+ ..|||+|++||||||+ +||+||++||+|++.+++++|+|+|+..++++|++.++
T Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~ 177 (212)
T cd03751 106 KVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKF 177 (212)
T ss_pred HHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhcc
Confidence 99999999987543 2699999999999996 48999999999999999999999999999999996543
No 16
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-37 Score=237.92 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=136.8
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+| |||+|++||||||++.+|+||++||+|++.+++++++|+|+..++++||+..+
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~ 144 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK 144 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC
Confidence 99999999875 78999999999997568999999999999999999999999999999997543
No 17
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.7e-37 Score=241.26 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=133.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|+|.+.+ ..++.+||++|++++++++||..+|++.+.+++|.+++.|++++++++++
T Consensus 24 v~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 100 (211)
T cd03749 24 VKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV 100 (211)
T ss_pred HhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999998764 24577999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~--~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+.++++++. + +.|||+|++||||||++ ||+||++||+|++.+++++|+|+|+..++++||+..+
T Consensus 101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~ 172 (211)
T cd03749 101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFE 172 (211)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhc
Confidence 9999999998754 3 36899999999999965 8999999999999999999999999999999997754
No 18
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-37 Score=235.29 Aligned_cols=145 Identities=27% Similarity=0.418 Sum_probs=138.7
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|++.+.+..+..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.++.|||++++||||||++++|+||.+||+|++.+++++++|.++..++++|++..+
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~ 145 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK 145 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC
Confidence 99999999987799999999999997678999999999999999999999999999999997643
No 19
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=236.90 Aligned_cols=163 Identities=28% Similarity=0.376 Sum_probs=155.7
Q ss_pred CccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCC
Q 031022 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (167)
Q Consensus 2 ~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (167)
+||+++|+|++||++.|++|+|+|+|.+.+..|.+++.+|||+++|+++++.+|+.||+..|.+.++.+.+.|++++...
T Consensus 23 ~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ 102 (235)
T KOG0179|consen 23 SPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKK 102 (235)
T ss_pred CccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCcccccccC
Q 031022 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNLFSFFKDL 161 (167)
Q Consensus 82 ~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~~~~~~~~ 161 (167)
|++.++|+.++.+||.+|++||.+..++||+|++|++.+|+.||.|++....+.|-|+++.+++++|| |++.+|++.
T Consensus 103 ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLD---nQi~~kn~~ 179 (235)
T KOG0179|consen 103 MSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLD---NQIGHKNQN 179 (235)
T ss_pred ccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhh---hhccCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 888888876
Q ss_pred CCCCCC
Q 031022 162 PKGKER 167 (167)
Q Consensus 162 ~~~~~~ 167 (167)
-.++||
T Consensus 180 ~e~~~~ 185 (235)
T KOG0179|consen 180 LENAER 185 (235)
T ss_pred cccCcc
Confidence 455543
No 20
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-37 Score=235.44 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=134.9
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+|+||||||+|+|++++.++..++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++++++++.+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998889889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+++++.+|.++ .||+|++||||||++ ||+||.+||+|++.+++++|+|+|+..++++||+..
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~-g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~ 142 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYT-GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY 142 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCC-CCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc
Confidence 99999998764 499999999999964 799999999999999999999999999999998653
No 21
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7.7e-37 Score=245.96 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=137.7
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+.+.++.+++.+||++|+++++++++|..+|++.+++.+|.+++.|++.++.++++
T Consensus 28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 107 (253)
T PTZ00246 28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPV 107 (253)
T ss_pred HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999887877789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~--~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+++.++.+++. + ++|||+|++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.
T Consensus 108 ~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~ 178 (253)
T PTZ00246 108 EQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQE 178 (253)
T ss_pred HHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHh
Confidence 9999999998754 3 37999999999999976689999999999999999999999999999999964
No 22
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=3.8e-36 Score=229.54 Aligned_cols=145 Identities=27% Similarity=0.383 Sum_probs=138.0
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|++.+.+..+..++.+|||+|+++++++++|..+|++.+.+.++.++..|+++++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC--CCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~--rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.++. |||++++|+||||++++|+||.+||+|++.+++++++|+|+..++++|++..+
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~ 147 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK 147 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc
Confidence 999999998875 99999999999997669999999999999999999999999999999997644
No 23
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4e-36 Score=235.36 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=137.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+.+ ++..++.+||++|+++++++++|..+|++.+.+.++.++..|++++|+++++
T Consensus 24 ~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~ 102 (209)
T cd01911 24 VKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPV 102 (209)
T ss_pred HHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999999865 5667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~--~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|++++++++ +++ .|||+|++||||||++++|+||.+||+|++.+++++++|+|+..++++|++..+
T Consensus 103 ~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~ 175 (209)
T cd01911 103 EVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYK 175 (209)
T ss_pred HHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcc
Confidence 999999999984 433 689999999999998778999999999999999999999999999999996643
No 24
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.5e-36 Score=239.33 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=135.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|++.+ +.++..++.+||++|+++++++++|..+|++.++++++.+++.|++.+++++++
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 111 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV 111 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999999998 467777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+|++++++++.+ + .|||+|++||||||+ .||+||.+||+|++.+++++|+|.|+..++++|++.
T Consensus 112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~ 181 (241)
T PRK03996 112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKN 181 (241)
T ss_pred HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHh
Confidence 99999999998533 2 689999999999996 489999999999999999999999999999999974
No 25
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-36 Score=234.48 Aligned_cols=146 Identities=20% Similarity=0.219 Sum_probs=135.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|+++++.++++
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4689999999999999999999997 456777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~--~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|++++++++. + +.|||+|++||||||+ ++|+||++||+|++.+++++|+|+|++.++++|++..
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 174 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEY 174 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhc
Confidence 9999999998854 3 3699999999999996 4899999999999999999999999999999999643
No 26
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=8.6e-36 Score=235.82 Aligned_cols=145 Identities=22% Similarity=0.263 Sum_probs=135.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+|++.+.++++.++..|++++++++++
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV 104 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4689999999999999999999997 567777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~--~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+|++++++++. ++ .|||+|++||||+|+ ++|+||++||+|++.+++++++|+|+..++++||+.
T Consensus 105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~ 174 (224)
T TIGR03633 105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKE 174 (224)
T ss_pred HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHh
Confidence 9999999999843 32 689999999999995 589999999999999999999999999999999964
No 27
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=230.06 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=135.3
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
...|+|.|||+.++||||+++||+++ .+..+++..||++|++||+|++||+.+|+++++++.|.++++|++.|++++++
T Consensus 31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~V 109 (241)
T KOG0176|consen 31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISV 109 (241)
T ss_pred HhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccH
Confidence 35799999999999999999999997 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-------cc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYE-------KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~-------~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+.+.++++... .+ .|||||++|+||+|+ .||+||+.||||+++.+++.|||+|++.+++.|....+
T Consensus 110 Es~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~ 186 (241)
T KOG0176|consen 110 ESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYH 186 (241)
T ss_pred HHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHHHHHHHHHHh
Confidence 9999999999621 12 399999999999995 59999999999999999999999999999998886554
No 28
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.1e-35 Score=228.52 Aligned_cols=147 Identities=26% Similarity=0.390 Sum_probs=134.4
Q ss_pred cCCceEEEEEeCCEEEEEEeCCcccCceeecCC-cCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 6 ~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~-~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
++|+|+|||+++||||||+|++.+.+..+..++ .+|||+|+++++++++|..+|++.+.++++.+++.|++.++.++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 589999999999999999999999877775555 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEc-CeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALL----YEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG-YTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l----~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+++.+++++ +..++||+++++|+||||++++|+||.+||+|++.++ ++.|+|+|+..++++|++..
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~ 154 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY 154 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc
Confidence 97777777665 3335799999999999998767999999999999999 69999999999999999765
No 29
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-35 Score=232.41 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=135.0
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|++.+. .++..++.+||++|+++++++++|..+|++.+.+++|.+++.|++++++++++
T Consensus 24 ~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (213)
T cd03753 24 IKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV 102 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999985 45667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c-------CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEK--R-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r-------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+++++++++|.. + .|||+|++||||||+ +||+||++||+|++.+++++|+|+|++.++++|++..
T Consensus 103 ~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~ 178 (213)
T cd03753 103 ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKY 178 (213)
T ss_pred HHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhc
Confidence 99999999998642 1 489999999999996 5899999999999999999999999999999998643
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-34 Score=231.32 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=126.0
Q ss_pred eEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEec----CcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC-CCCH
Q 031022 10 ALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH----DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER-DMKP 84 (167)
Q Consensus 10 tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~----d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~-~~~~ 84 (167)
=+|||+++||||||+|+|.+.+.... ++.+||++|+ +|++|++||..||++.+++++|.+++.|++++|+ ++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 47999999999999999988764444 4799999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHh---c-c------CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC----eEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLYE---K-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY----TSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~~---~-r------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~----~~a~G~g~~~~~~~ld~ 150 (167)
+.+|++++++++. + . .|||+|++||||||++.||+||++||+|++.+++ ++|+|. +..++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998643 1 1 4899999999999976689999999999999994 589995 6889999986
Q ss_pred hcC
Q 031022 151 FGN 153 (167)
Q Consensus 151 ~~~ 153 (167)
..+
T Consensus 160 ~yk 162 (236)
T cd03765 160 VIT 162 (236)
T ss_pred hcC
Confidence 543
No 31
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=226.20 Aligned_cols=148 Identities=12% Similarity=0.139 Sum_probs=137.8
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
..++++|+||||||||||+++||.++++ +......+||+.|++||+|+++|+.+|.+.+.+++|.|+..|+-+|+.++|
T Consensus 30 Aven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP 108 (254)
T KOG0184|consen 30 AVENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIP 108 (254)
T ss_pred HHhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4578999999999999999999998875 555788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
.+.+|+++++++|-.. .|||||+.++++||+ +||+||.+||||.++.++++|+|+|.+.+..-|++|+=
T Consensus 109 ~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~ 181 (254)
T KOG0184|consen 109 GKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKI 181 (254)
T ss_pred hHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhccc
Confidence 9999999999986542 699999999999995 59999999999999999999999999999999998864
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=6e-34 Score=226.11 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=127.0
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-CCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMK 83 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g-~~~~ 83 (167)
.++|+|+|||+++||||||+|++. ++.+||++|+||++|+++|..+|++.++++++.+++.|++.++ .+++
T Consensus 24 v~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~ 95 (228)
T TIGR03691 24 IARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVT 95 (228)
T ss_pred HHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Confidence 357999999999999999999962 4689999999999999999999999999999999999999998 7899
Q ss_pred HHHHHHHHHHHHHhc---cCCCcceEEEEEEEcC-CCCcEEEEECCCCceEEcC-eEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALLYEK---RFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVGY-TSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l~~~---r~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+|+.+++.++.. +.|||+|++|+||||+ +.||+||++||+|++.+++ ++|+|+|+..++.+||+..+
T Consensus 96 v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~ 170 (228)
T TIGR03691 96 GRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR 170 (228)
T ss_pred HHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC
Confidence 999999888877432 4699999999999986 4689999999999999976 79999999999999997543
No 33
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=214.21 Aligned_cols=146 Identities=13% Similarity=0.173 Sum_probs=137.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+.+|+|||.++|||||+++++.++..+-.+.+.+||++|+|+++|+++|+.+|+..|++++|..+++|.++||+++|+
T Consensus 28 is~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~ 107 (249)
T KOG0178|consen 28 ISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPC 107 (249)
T ss_pred HhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 34788999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hc--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~--~~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
+.|+++++++.+ ++ ..||||||+|.+|||+.-|.+||+.||||++..|++.++|..+..++.+|..
T Consensus 108 eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkq 177 (249)
T KOG0178|consen 108 EQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQ 177 (249)
T ss_pred HHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHh
Confidence 999999999984 44 2699999999999998778999999999999999999999999999999874
No 34
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=206.81 Aligned_cols=145 Identities=20% Similarity=0.300 Sum_probs=140.1
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
.|++||++.|+|++|+|+...++.++.+++.+|+++++|+++|+++|..+|+.++.++++++++.|++++|.+++|+..|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~-r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
|++++.+.+. | .+||.|++|+||||++.||.||++|..|+..+.+++++|.|+.+++++||++++
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~ 148 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK 148 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC
Confidence 9999999876 6 789999999999999888999999999999999999999999999999998765
No 35
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-31 Score=207.89 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=139.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|++|+|++.|||+|+|+|++.+.+|.+.+.+||.+||++.+-+++|-+|||+.+-+.+..||++|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
.+.++.+++++|.+|..-+-+..+|||||+. ||.||+||..|+..+.+-+++|+|+.+|+++||.
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~-GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDs 212 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKK-GPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDS 212 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCC-CCceEEEcCCCCEecCceEeecCCCceeEEeecc
Confidence 9999999999999985568899999999975 8999999999999999999999999999999994
No 36
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=204.95 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=134.0
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+||++++|+|||+.+++... .+...+...||..++||++++++|+.+|++.++++.|-||+.|++..+.++++
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv 105 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV 105 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence 45899999999999999999998764 67778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~--~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
+.++++|+.+.+ ++- .||||+++||+|+|.++.|+||++||+|.+.+|++.|+|.++.....+|++
T Consensus 106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK 175 (249)
T KOG0183|consen 106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEK 175 (249)
T ss_pred HHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHH
Confidence 999999999984 442 699999999999999888999999999999999999999999877777665
No 37
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-31 Score=199.91 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=137.9
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
...+|.+.|||+-.||||||++++..+ .++.....+|+++|.++|+|..||+.+|++.+++..|.-++.|...|+++||
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 346899999999999999999997764 6777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCc
Q 031022 84 PETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 84 ~~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
+..|...++..++++ . .||||+++++||||+ ++|.||++||||+++.|+++|.|.+...+..+|++..|.
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~e 180 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNE 180 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHHHhcc
Confidence 999999999999654 2 699999999999996 599999999999999999999999999999999887776
No 38
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-29 Score=185.84 Aligned_cols=152 Identities=61% Similarity=0.950 Sum_probs=145.0
Q ss_pred CCccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC
Q 031022 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (167)
Q Consensus 1 ~~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (167)
|++++.+|++++|+++||||.||+|.|+.......+++.+|||+++|++++|.+|++.|.|++.++++....+|+++.++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 67899999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceE-EcCeEEEeeCCcchhhHHhhhc
Q 031022 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKY-VGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 81 ~~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+|-|+.+++.+|.++|++|+.||.+..+|||+|+++.|+|+..|..|... ..++.+.|.+++..+++.+.++
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly 153 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY 153 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998899999999999876 5689999999999999888664
No 39
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=1.2e-27 Score=177.07 Aligned_cols=145 Identities=26% Similarity=0.294 Sum_probs=136.9
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+||++++||||+|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEc-CeEEEeeCCcchhhHHhhhcCc
Q 031022 89 SLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG-YTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 89 ~~i~~~l~~~r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
+.+++.++..+ .||+++++|+||+|+ ++|+||.+||+|++.+. .++++|.++..+.++|+...+.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~ 147 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKP 147 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcC
Confidence 99999998776 599999999999997 68999999999999999 9999999999999999977653
No 40
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=3.4e-28 Score=184.82 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=114.9
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecC-cEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
+|+|||+++||||||+|+|++.+.++.+++.+||++|+| +++|+.+|..+|+++|.++++.++++|+.+.+ +.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~-----~~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLL-----RAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHH-----HHH
Confidence 699999999999999999999999999999999999999 99999999999999999999999999998866 355
Q ss_pred HHHHHHHHHhccCCCcc-eEEEEEEEcCCCCcEEEEECCCCceEEcC--eEEEeeCCcchhhHHhhhcC
Q 031022 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKYVGY--TSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 88 a~~i~~~l~~~r~rP~~-v~~ivaG~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+..++ ..+++|+. +.++++++ ++||.+||.|++.+.+ +.++|+|+.++++++|..++
T Consensus 76 a~l~~~l~-~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk 138 (171)
T cd01913 76 VELAKDWR-TDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD 138 (171)
T ss_pred HHHHHHHH-hccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc
Confidence 55544443 33555665 55655433 3899999999999984 99999999999999997554
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.96 E-value=6.1e-28 Score=184.07 Aligned_cols=135 Identities=12% Similarity=0.136 Sum_probs=116.9
Q ss_pred CceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 031022 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (167)
Q Consensus 8 G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i-~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~ 86 (167)
|+|++||+++||||||+|+|++.+.++.+++.+||++| +|+++|+++|..+|+|.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999999983 22 577
Q ss_pred HHHHHHHHHHhccC-CCcceEEEEEEEcCCCCcEEEEECCCCceEEc--CeEEEeeCCcchhhHHhhhcC
Q 031022 87 FASLVSALLYEKRF-GPYFCQPVIAGLSDEDKPFICTMDSIGAKYVG--YTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 87 la~~i~~~l~~~r~-rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~ld~~~~ 153 (167)
.|+....+ ...++ +|+.+++|+ +|. |+||.+|+.|++.+. ++.++|+|+.+++++||..++
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~ 139 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLE 139 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhh
Confidence 77655444 22333 688899999 442 699999999999766 899999999999999986443
No 42
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.8e-28 Score=186.55 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=130.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
...|+++||+|.++.+||++-++..+. .+...+||++|++|+++.++|+++|++.|++++|.||..+++.|+.++++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 457999999999999999999987654 36678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
..+.+.+.+-++.+ | .|||||+++++|||+. |||||+++|+|.+.+++..+||+-++.+..+|++
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr 174 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYEFCPSGNVFECKGMSIGSRSQSARTYLER 174 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEEEcCCccEEEEeeeecccchhhHHHHHHH
Confidence 99999999988754 4 5999999999999975 8999999999999999999999999888887764
No 43
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.95 E-value=1.6e-27 Score=181.05 Aligned_cols=133 Identities=12% Similarity=0.150 Sum_probs=114.2
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i-~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
+|+|||+++||||||+|+|++.+.++.+++.+||++| +|+++|+.+|..+|++.|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999998742 4777
Q ss_pred HHHHHHHHHhccCCCcc-eEEEEEEEcCCCCcEEEEECCCCceEEc--CeEEEeeCCcchhhHHhhhc
Q 031022 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKYVG--YTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 88 a~~i~~~l~~~r~rP~~-v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~ld~~~ 152 (167)
|+.++++ ..++++|+. +.+++++| ++||.+||.|++.+. ++.++|+|+.+++++||..+
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y 137 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALL 137 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhh
Confidence 7777663 223334433 66666533 389999999999996 69999999999999999766
No 44
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-28 Score=182.97 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=135.3
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|++|+++++||||++|+|.+.+.++.++-.+||.+|+|+|+||.||.+||.|.+.+.++..+..|..+++.++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 85 ~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
...|+..+++.|++|. -+..++||||||+..|.++|.|---|+..+.++..-|+|+.++|+++|.
T Consensus 96 ~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~ 160 (224)
T KOG0174|consen 96 HTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDA 160 (224)
T ss_pred HHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehh
Confidence 9999999999999862 3788999999999778999999666777788888888999999999883
No 45
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-27 Score=181.55 Aligned_cols=143 Identities=16% Similarity=0.263 Sum_probs=133.6
Q ss_pred cCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 031022 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (167)
Q Consensus 6 ~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~ 85 (167)
+.|-|+||++++|++|+++.|++.. +++.+++...+|+|+.+|+|+++|..+|++..++++|.++.++++.||.+||++
T Consensus 34 ~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D 112 (246)
T KOG0182|consen 34 QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD 112 (246)
T ss_pred cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 3488999999999999999998875 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHh
Q 031022 86 TFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLD 149 (167)
Q Consensus 86 ~la~~i~~~l--~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld 149 (167)
.||++++++. |+++ +||+||.+++-|+|++.||.+|.+||.|-+..+++.+.|--+..+..+|+
T Consensus 113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLE 180 (246)
T KOG0182|consen 113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLE 180 (246)
T ss_pred HHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHH
Confidence 9999999986 5665 89999999999999988999999999999999999999999887877766
No 46
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-28 Score=187.08 Aligned_cols=147 Identities=21% Similarity=0.292 Sum_probs=137.2
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhh-hhcCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQ-LREERDM 82 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~-~~~g~~~ 82 (167)
...+|+||||+|++||||||||+..|++++...++.+||++|+||+++|++|..+|+|.+.+.+......-. +..|+.+
T Consensus 37 p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l 116 (256)
T KOG0185|consen 37 PIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSL 116 (256)
T ss_pred ceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccccc
Confidence 346899999999999999999999999999999999999999999999999999999999999987776533 5567999
Q ss_pred CHHHHHHHHHHHHHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 83 KPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 83 ~~~~la~~i~~~l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
.|+.+.+++.++||.+| +.|++.+++|||+|.++.|.|-.+|..|..++.+..|.|.|..++.++|..
T Consensus 117 ~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~ 186 (256)
T KOG0185|consen 117 GPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRD 186 (256)
T ss_pred ChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHH
Confidence 99999999999999987 799999999999998889999999999999999999999999999999874
No 47
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-26 Score=178.66 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=136.3
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
...+|+|++|+++|||||+++|+|.+.+..+..++.+||+.|.++|+||.+|-++|...+.+.+..+.++|+++.++.+.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhh
Q 031022 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDC 150 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~ 150 (167)
+-..-+++.+.|+.+. .-.+..+|+||+|.. |||||.+-|.|+....++.++|+|+..++.+|+.
T Consensus 113 Vv~A~~mlkQ~LFrYq-G~IgA~LiiGGvD~T-GpHLy~i~phGStd~~Pf~alGSGslaAmsvlEs 177 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQ-GHIGAALILGGVDPT-GPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLES 177 (271)
T ss_pred eeeHHHHHHHHHHHhc-CcccceeEEccccCC-CCceEEEcCCCCcCccceeeeccchHHHHHHHHH
Confidence 9999999999997653 358899999999975 8999999999999999999999999999999874
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-11 Score=92.30 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=108.4
Q ss_pred cCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecC-cEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 6 ~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
.+++|+++++-++-|+|++|.+++-+..+++.+..|+.+|.+ ++++|++|..+|+..|.+.+..+++.|.-+ ..-.+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~--L~raa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD--LFRAA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc--HHHHH
Confidence 478999999999999999999999999999999999988876 899999999999999999999999988521 11133
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEE--cCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYV--GYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
-.+|+.++.--| +|-+..-++++ |++ .+|-+...|.+.+ ....+||+|..++++-...+..
T Consensus 80 velaKdwr~Dk~---lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~ 142 (178)
T COG5405 80 VELAKDWRTDKY---LRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME 142 (178)
T ss_pred HHHHHhhhhhhH---HHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh
Confidence 344444443333 34466667775 643 6899999998875 3589999999998887665543
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00046 Score=53.72 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=98.0
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEec---C-cEEEEEecChhhHHHHHHHHHHHHHHhhhhc-CCCCC
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH---D-RLFIGLSGLATDSQTLYQRLVFRHKLYQLRE-ERDMK 83 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~---d-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~-g~~~~ 83 (167)
+=|+|++-..|.|+++|+|...+. -.-...+|+|... | -++++.+|..|-.|.+++.+.+..+.-+... -..++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 458999999999999999987653 2233566665443 3 3567889999999999999988876322211 12345
Q ss_pred HHHHHHHHHHHH---Hhc-c------CCCcceEEEEEEEcCCCCcEEEEECCCCceEE----cCeEEEeeCCcchhhHHh
Q 031022 84 PETFASLVSALL---YEK-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYV----GYTSLLVYFPSKKYCFLD 149 (167)
Q Consensus 84 ~~~la~~i~~~l---~~~-r------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~----~~~~a~G~g~~~~~~~ld 149 (167)
.-..+..++... +.+ + .--|.|++|+||-=..+-|+||.|-|.|++.+ .++.-+|... +..++||
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhh
Confidence 555555555544 222 1 24689999999965433589999999999874 5777888664 4567777
Q ss_pred hhc
Q 031022 150 CFG 152 (167)
Q Consensus 150 ~~~ 152 (167)
+..
T Consensus 160 R~i 162 (255)
T COG3484 160 RTI 162 (255)
T ss_pred hhh
Confidence 643
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=70.96 E-value=3.2 Score=32.28 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=17.8
Q ss_pred ceEEEEEeCCEEEEEEeCC
Q 031022 9 SALVAMVGKNCFAIASDRR 27 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~ 27 (167)
+.+||.-+++|+|||.|+|
T Consensus 2 SLII~y~GknGaViaGDkR 20 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKR 20 (194)
T ss_pred eEEEEEecCCCcEEeccce
Confidence 5789999999999999997
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.68 E-value=6.3 Score=31.92 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=56.6
Q ss_pred ceEEEEEeCCEEEEEEeCCcc----------------------------------cCceeecCCcCceEEecCcEEEEEe
Q 031022 9 SALVAMVGKNCFAIASDRRLG----------------------------------VQLQTIATDFQRISKIHDRLFIGLS 54 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~----------------------------------~~~~i~~~~~~KI~~i~d~i~~~~s 54 (167)
+.+|+..++||.|+|.|+|.. .=.+...++.+|+.+++|.+++|=.
T Consensus 2 tLviay~gknGaviaGDrR~i~frgdee~re~lEekLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV 81 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREITFRGDEEDREKLEEKLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEV 81 (293)
T ss_pred eEEEEEecCCCcEEeccceEEEEecChhHHHHHHHHhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEe
Confidence 578999999999999999821 0124556788899999888877654
Q ss_pred cChh--------------------------------h-------HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 031022 55 GLAT--------------------------------D-------SQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL 95 (167)
Q Consensus 55 G~~a--------------------------------D-------~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l 95 (167)
+..+ + ...+.+.+..++.. -+..-.++.+.+++.+-.++
T Consensus 82 ~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~Ke~aneflk--~~l~~k~~lqd~~dal~elf 159 (293)
T COG4079 82 SSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTKEVANEFLK--DNLTKKSKLQDAVDALMELF 159 (293)
T ss_pred ecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHHHHHHHHHH--hhccCCCCHHHHHHHHHHHH
Confidence 4332 1 22344444333332 23445677888888888877
Q ss_pred H
Q 031022 96 Y 96 (167)
Q Consensus 96 ~ 96 (167)
-
T Consensus 160 e 160 (293)
T COG4079 160 E 160 (293)
T ss_pred H
Confidence 3
No 52
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=50.98 E-value=17 Score=30.72 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCcEEEEECCCCceEE--cCeEEEeeCCcchhhHHhhhcCcccc
Q 031022 106 QPVIAGLSDEDKPFICTMDSIGAKYV--GYTSLLVYFPSKKYCFLDCFGNLFSF 157 (167)
Q Consensus 106 ~~ivaG~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~ld~~~~~~~~ 157 (167)
+++.||+|. +|.||..|..|.... .-...-++++...++.+.+|.|+=+.
T Consensus 262 ~vv~ag~~c--~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~~d~k 313 (361)
T KOG1523|consen 262 SVVAAGYDC--GPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLGMDRK 313 (361)
T ss_pred ceeecCCCC--CceEEEeccccceeeehhcCCccccCCchhHHHHHHHhccccc
Confidence 677899986 799999999984432 23334455666667789999888543
No 53
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=34.69 E-value=79 Score=22.10 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhcCC-CCCHHHH
Q 031022 61 QTLYQRLVFRHKLYQLREER-DMKPETF 87 (167)
Q Consensus 61 ~~l~~~~r~~~~~~~~~~g~-~~~~~~l 87 (167)
..+++.++..++.|++.++. +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 56788888899999999887 6665544
No 54
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=31.39 E-value=90 Score=19.67 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 031022 64 YQRLVFRHKLYQLREERDMKPETFASLVSAL 94 (167)
Q Consensus 64 ~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~ 94 (167)
.+.+++-...+....|+.++.+.+|..+.--
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 3455555566667789999999999887654
No 55
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=31.22 E-value=80 Score=19.68 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=26.5
Q ss_pred EEEECCCCceEEcCeEEEeeCC-cchhhHHhhhcCcccccccCCCC
Q 031022 120 ICTMDSIGAKYVGYTSLLVYFP-SKKYCFLDCFGNLFSFFKDLPKG 164 (167)
Q Consensus 120 Ly~id~~G~~~~~~~~a~G~g~-~~~~~~ld~~~~~~~~~~~~~~~ 164 (167)
-|.+|+.|......-. -+++. .+....++.+.+ .+|+.-...|
T Consensus 21 ~~~I~~~G~v~~~~v~-~s~~~~~l~~~a~~~v~~-~~~~p~~~~g 64 (79)
T PF03544_consen 21 EFTIDPDGRVSDVRVI-QSSGPPILDEAALRAVKK-WRFKPAPKNG 64 (79)
T ss_dssp EEEEETTTEEEEEEEE-EESSSSCSHHHHHHHHCC--EE-TT--CC
T ss_pred EEEEeCCCCEEEEEEE-EccCHHHHHHHHHHHHHh-CCCCCCCcCC
Confidence 4678899988765432 23443 488999999988 5666544444
No 56
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=26.45 E-value=71 Score=27.68 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=35.3
Q ss_pred EEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhc--cCCCcceEEEEEEEcCC
Q 031022 49 LFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEK--RFGPYFCQPVIAGLSDE 115 (167)
Q Consensus 49 i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l~~~--r~rP~~v~~ivaG~D~~ 115 (167)
=+.|+||..+|++.+.+..... +. ..+..+..+++|++.+-.+ .+.-.-+-+..||+-++
T Consensus 271 GllGlSg~ssD~R~l~~~~~~g-~~------A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIGEN 332 (396)
T COG0282 271 GLLGLSGLSSDMRDLEEAAAEG-NE------AKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIGEN 332 (396)
T ss_pred cccccccccchHHHHHHHhccC-ch------HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccccC
Confidence 3679999999999998755433 10 1223445555555555222 23334555667787654
No 57
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=26.07 E-value=1.7e+02 Score=20.62 Aligned_cols=36 Identities=6% Similarity=-0.060 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 031022 56 LATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL 95 (167)
Q Consensus 56 ~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l 95 (167)
++.|--.+++++|+.- .+++..++++.+++.+...+
T Consensus 39 LT~~HW~VI~~lR~~y----~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRDFY----LEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHHHH----HHHCCCCcHHHHHHHHHHHh
Confidence 4555566888876643 45688899999999876543
No 58
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=25.96 E-value=66 Score=22.39 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=12.9
Q ss_pred CcEEEEECCCCceEE
Q 031022 117 KPFICTMDSIGAKYV 131 (167)
Q Consensus 117 gp~Ly~id~~G~~~~ 131 (167)
+|+||++||.+...+
T Consensus 37 ~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 37 GPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEC
Confidence 699999999997654
No 59
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=25.82 E-value=1.5e+02 Score=22.89 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=33.9
Q ss_pred EecCcEEEEEecChh---hHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHh
Q 031022 44 KIHDRLFIGLSGLAT---DSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (167)
Q Consensus 44 ~i~d~i~~~~sG~~a---D~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l~~ 97 (167)
++...|.-|.+=..+ =++++++++++.+.......+....+-...+++|+++|-
T Consensus 106 ~l~~FiLPGgs~~aA~lh~ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~ 162 (184)
T COG2096 106 PLKSFVLPGGSPAAAALHVARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFV 162 (184)
T ss_pred CcceeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 344444444333322 345777777777766655555555667788999999864
No 60
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=25.71 E-value=1.5e+02 Score=22.55 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=31.7
Q ss_pred EecCcEEEEEecChhh---HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHh
Q 031022 44 KIHDRLFIGLSGLATD---SQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (167)
Q Consensus 44 ~i~d~i~~~~sG~~aD---~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l~~ 97 (167)
++...|+-|.+-..+- ++.+++++++.+.......+....+-.+.|++|+++|-
T Consensus 98 ~l~~FiLPggs~~~A~lh~aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFv 154 (171)
T TIGR00636 98 PLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFV 154 (171)
T ss_pred CCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 3555566655544443 34566666666554322333345567888999999864
No 61
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=24.31 E-value=1.4e+02 Score=20.86 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=27.6
Q ss_pred ecChhhHHHHHHHHHHHHHHhhhhcC---------C-CCCHHHHHHHHHHHHHhc
Q 031022 54 SGLATDSQTLYQRLVFRHKLYQLREE---------R-DMKPETFASLVSALLYEK 98 (167)
Q Consensus 54 sG~~aD~~~l~~~~r~~~~~~~~~~g---------~-~~~~~~la~~i~~~l~~~ 98 (167)
.|..-|+..+.+.++.-+..+.+.+= . .++++.+|.++.+.+...
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~ 97 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEK 97 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHH
Confidence 46667888888888775544432211 1 278999999999988543
No 62
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.34 E-value=89 Score=21.99 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=28.8
Q ss_pred eEEecCcEEEEEecChhhHHHHHHHHHHH---HHHhhhhcC
Q 031022 42 ISKIHDRLFIGLSGLATDSQTLYQRLVFR---HKLYQLREE 79 (167)
Q Consensus 42 I~~i~d~i~~~~sG~~aD~~~l~~~~r~~---~~~~~~~~g 79 (167)
+|+|-+..++.+.|..+|...+.+.++.. +..|++..|
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHYKG 50 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHYKG 50 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEeecC
Confidence 68899999999999999998888777654 445555433
No 63
>PRK07105 pyridoxamine kinase; Validated
Probab=23.11 E-value=73 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.8
Q ss_pred CcCceEEecCcEEEEEecChhhHHHHHH
Q 031022 38 DFQRISKIHDRLFIGLSGLATDSQTLYQ 65 (167)
Q Consensus 38 ~~~KI~~i~d~i~~~~sG~~aD~~~l~~ 65 (167)
..+||.-++|.+..|.+|..+|...+..
T Consensus 3 ~~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 3 PVKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCCeEEEEecccccceehHhhHHHHHHH
Confidence 3468899999999999999999988765
No 64
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=20.96 E-value=2.5e+02 Score=19.72 Aligned_cols=36 Identities=8% Similarity=-0.117 Sum_probs=25.6
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 031022 56 LATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALL 95 (167)
Q Consensus 56 ~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l 95 (167)
++.+--.+++++|+.- .+|+..++++.+.+.+...+
T Consensus 38 LT~~Hw~vI~~lR~~y----~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFLRDFY----AEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHHHHHH----HHHCCCCcHHHHHHHHHHHh
Confidence 4555566788876643 45688899999998887644
No 65
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.86 E-value=1.7e+02 Score=18.28 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=12.8
Q ss_pred HHhhhhcCCCCCHHHHHHHHH
Q 031022 72 KLYQLREERDMKPETFASLVS 92 (167)
Q Consensus 72 ~~~~~~~g~~~~~~~la~~i~ 92 (167)
..|-..+|.+|++..+|+.+.
T Consensus 16 ~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 16 REYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHhC
Confidence 445556799999988887664
No 66
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=20.76 E-value=1.8e+02 Score=21.54 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 031022 60 SQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLY 96 (167)
Q Consensus 60 ~~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l~ 96 (167)
++.++++++..+............+-.+.+++|+++|
T Consensus 120 aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd~lf 156 (163)
T PF01923_consen 120 ARTVCRRAERRAVRLFREEEVRPDILRYLNRLSDYLF 156 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4455565555554444443444456677888888886
No 67
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.50 E-value=74 Score=21.65 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=11.5
Q ss_pred CcEEEEECCCCceE
Q 031022 117 KPFICTMDSIGAKY 130 (167)
Q Consensus 117 gp~Ly~id~~G~~~ 130 (167)
+|+|+++||.=-..
T Consensus 25 ~PrL~yvdp~~~~~ 38 (89)
T cd01262 25 GPRLIYVDPVKKVV 38 (89)
T ss_pred CceEEEEcCCcCeE
Confidence 89999999985443
No 68
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.15 E-value=75 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.2
Q ss_pred EEEEEEcCCCCcEEEEECCCCc
Q 031022 107 PVIAGLSDEDKPFICTMDSIGA 128 (167)
Q Consensus 107 ~ivaG~D~~~gp~Ly~id~~G~ 128 (167)
++|.|||+ +.+|..||.|-
T Consensus 151 v~itgyDk---~n~yynDpyG~ 169 (195)
T COG4990 151 VLITGYDK---YNIYYNDPYGY 169 (195)
T ss_pred eEeecccc---cceEecccccc
Confidence 45779985 68999999964
Done!