Query 031022
Match_columns 167
No_of_seqs 127 out of 1109
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 1E-41 3.5E-46 266.1 20.5 151 1-151 2-152 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.1E-41 3.8E-46 267.9 20.7 152 1-152 2-154 (222)
3 1yar_H Proteasome beta subunit 100.0 1.3E-41 4.6E-46 266.6 18.8 151 1-153 1-151 (217)
4 1iru_J 20S proteasome; cell cy 100.0 3.4E-41 1.2E-45 261.8 18.7 153 1-153 1-155 (205)
5 1ryp_J 20S proteasome; multica 100.0 1.3E-39 4.4E-44 252.7 19.7 151 2-153 2-154 (204)
6 3h4p_a Proteasome subunit beta 100.0 4.9E-40 1.7E-44 258.1 16.3 145 8-152 1-146 (219)
7 1j2q_H Proteasome beta subunit 100.0 3.2E-39 1.1E-43 250.1 18.6 144 9-153 1-145 (202)
8 1ryp_A 20S proteasome; multica 100.0 1.7E-39 5.7E-44 258.5 17.0 148 5-153 26-178 (243)
9 1ryp_N 20S proteasome; multica 100.0 3.7E-39 1.3E-43 255.1 15.5 150 5-154 5-161 (233)
10 1iru_N 20S proteasome; cell cy 100.0 6E-39 2.1E-43 251.5 14.8 148 5-153 5-155 (219)
11 1ryp_L 20S proteasome; multica 100.0 2.4E-38 8.4E-43 246.9 17.8 145 9-153 1-145 (212)
12 1ryp_H 20S proteasome; multica 100.0 4.5E-38 1.5E-42 244.3 19.1 148 4-153 5-152 (205)
13 1iru_H 20S proteasome; cell cy 100.0 4.1E-38 1.4E-42 244.4 18.8 144 9-153 1-144 (205)
14 1iru_L 20S proteasome; cell cy 100.0 3.5E-38 1.2E-42 244.6 18.1 143 9-152 1-143 (204)
15 1ryp_D 20S proteasome; multica 100.0 3.8E-38 1.3E-42 250.4 18.5 148 5-152 25-177 (241)
16 1ryp_K 20S proteasome; multica 100.0 2.3E-38 7.9E-43 244.5 16.5 145 9-153 2-149 (198)
17 1iru_G 20S proteasome; cell cy 100.0 2.6E-38 8.9E-43 253.4 17.3 146 5-151 30-179 (254)
18 3nzj_K Proteasome component PR 100.0 2.9E-38 9.9E-43 257.3 17.7 148 5-152 72-219 (287)
19 1iru_C 20S proteasome; cell cy 100.0 4.8E-38 1.6E-42 252.7 18.7 149 5-153 28-180 (261)
20 1ryp_C 20S proteasome; multica 100.0 5E-38 1.7E-42 250.0 18.5 149 5-153 28-180 (244)
21 1iru_A 20S proteasome; cell cy 100.0 4.2E-38 1.4E-42 250.8 18.1 146 7-153 35-184 (246)
22 1g0u_M Proteasome component PR 100.0 1.6E-38 5.4E-43 256.3 15.7 149 6-154 39-194 (266)
23 1yar_A Proteasome alpha subuni 100.0 1.3E-37 4.3E-42 246.2 18.9 147 5-153 31-181 (233)
24 1iru_D 20S proteasome; cell cy 100.0 6.6E-38 2.2E-42 250.2 17.3 147 5-152 26-176 (248)
25 1iru_B 20S proteasome; cell cy 100.0 9.4E-38 3.2E-42 246.9 17.6 147 5-153 28-178 (233)
26 1ryp_E 20S proteasome; multica 100.0 6.1E-38 2.1E-42 249.3 16.5 148 5-153 23-180 (242)
27 1iru_K 20S proteasome; cell cy 100.0 1.4E-37 4.7E-42 240.8 17.3 145 9-153 2-148 (201)
28 1iru_E 20S proteasome; cell cy 100.0 1.8E-37 6.1E-42 246.5 16.8 147 5-153 31-186 (241)
29 1ryp_G 20S proteasome; multica 100.0 2.2E-37 7.5E-42 246.7 16.9 145 5-151 27-175 (244)
30 1q5q_H Proteasome beta-type su 100.0 3.9E-37 1.3E-41 243.9 18.2 144 9-152 1-154 (235)
31 3nzj_H Proteasome component PU 100.0 4.6E-37 1.6E-41 247.2 18.6 147 4-152 25-171 (261)
32 3h4p_A Proteasome subunit alph 100.0 1.4E-37 4.9E-42 250.5 15.5 146 5-152 35-184 (264)
33 3unf_H Proteasome subunit beta 100.0 5.9E-37 2E-41 243.1 18.8 142 9-152 1-142 (234)
34 1ryp_F 20S proteasome; multica 100.0 3.9E-37 1.3E-41 243.5 17.4 144 5-152 28-175 (233)
35 1ryp_I 20S proteasome; multica 100.0 7E-37 2.4E-41 240.6 18.4 143 9-153 1-143 (222)
36 3nzj_F Proteasome component C1 100.0 3.5E-37 1.2E-41 251.0 17.1 145 5-151 31-179 (288)
37 1j2p_A Alpha-ring, proteasome 100.0 1E-36 3.4E-41 243.0 18.6 146 5-153 31-180 (246)
38 1q5r_H Proteasome beta-type su 100.0 7.6E-37 2.6E-41 249.6 18.2 148 5-152 62-219 (294)
39 1ryp_B 20S proteasome; multica 100.0 1E-36 3.5E-41 243.5 17.5 148 5-153 28-180 (250)
40 1iru_I 20S proteasome; cell cy 100.0 2.7E-36 9.3E-41 239.1 19.0 143 9-153 1-143 (234)
41 3mi0_A Proteasome subunit alph 100.0 2.3E-36 7.9E-41 241.5 18.1 141 5-153 24-172 (248)
42 2jay_A Proteasome; hydrolase; 100.0 1.2E-36 4E-41 248.2 16.2 148 5-152 54-211 (291)
43 1iru_F 20S proteasome; cell cy 100.0 2.1E-36 7.1E-41 243.5 16.5 145 5-153 29-177 (263)
44 3unf_N Proteasome subunit beta 100.0 5.7E-36 2E-40 231.2 17.0 142 9-153 1-143 (199)
45 1q5q_A Proteasome alpha-type s 100.0 3.3E-35 1.1E-39 236.1 17.4 140 5-152 24-171 (259)
46 2z3b_A ATP-dependent protease 100.0 4.1E-32 1.4E-36 207.2 15.2 137 5-152 2-143 (180)
47 1m4y_A ATP-dependent protease 100.0 3.4E-32 1.2E-36 205.8 14.3 133 9-152 1-137 (171)
48 1g3k_A ATP-dependent protease 100.0 1.6E-31 5.3E-36 202.8 14.8 134 9-153 1-139 (174)
49 1b66_A 6-pyruvoyl tetrahydropt 25.9 77 0.0026 22.0 3.9 45 54-98 62-116 (140)
50 2zhy_A ATP:COB(I)alamin adenos 22.2 1.5E+02 0.0052 21.7 5.0 37 61-97 125-161 (183)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1e-41 Score=266.13 Aligned_cols=151 Identities=27% Similarity=0.411 Sum_probs=146.3
Q ss_pred CCccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC
Q 031022 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (167)
Q Consensus 1 ~~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (167)
.+||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|++++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 81 ~~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+++++.+|+++++++|++|+|||++++||||||++++|+||++||+|++.++++.|+|+|+..++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~ 152 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 152 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhc
Confidence 99999999999999999888999999999999977679999999999999999999999999999999987
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.1e-41 Score=267.91 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=146.7
Q ss_pred CCccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-
Q 031022 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE- 79 (167)
Q Consensus 1 ~~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g- 79 (167)
++|+..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 80 RDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 80 ~~~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
++++++.+|+++++++|++|++||++++||||||++++|+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~ 154 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV 154 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccc
Confidence 9999999999999999998889999999999999876799999999999999999999999999999999763
No 3
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.3e-41 Score=266.60 Aligned_cols=151 Identities=21% Similarity=0.324 Sum_probs=138.6
Q ss_pred CCccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC
Q 031022 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (167)
Q Consensus 1 ~~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (167)
|||+..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.+++++|.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 81 ~~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++.+|+++++++|.+|.|||++++|||||| + ||+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 151 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS 151 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc
Confidence 999999999999999998889999999999999 4 8999999999999999999999999999999997653
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.4e-41 Score=261.77 Aligned_cols=153 Identities=53% Similarity=0.857 Sum_probs=144.3
Q ss_pred CCccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC
Q 031022 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (167)
Q Consensus 1 ~~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (167)
|+||.++|+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcceEEEEEEEcC-CCCcEEEEECCCCceEEc-CeEEEeeCCcchhhHHhhhcC
Q 031022 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVG-YTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 81 ~~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++.+|+++++++|++|..||++++||||||+ +++|+||++||+|++.++ .+.++|+|+..++++||+..+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~ 155 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE 155 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC
Confidence 9999999999999999988789999999999996 568999999999999776 459999999999999997643
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.3e-39 Score=252.70 Aligned_cols=151 Identities=40% Similarity=0.688 Sum_probs=143.0
Q ss_pred CccccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCC
Q 031022 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (167)
Q Consensus 2 ~~~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (167)
+||..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ +++++++|..+|++.++++++.+++.|+++++.+
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 589999999999999999999999999999999888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCcceEEEEEEEcC-CCCcEEEEECCCCceEEc-CeEEEeeCCcchhhHHhhhcC
Q 031022 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVG-YTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 82 ~~~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++++.+|+++++++|++|..||++++||||||+ +++|+||++||+|++.++ .+.++|+|+..++++||+..+
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~ 154 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE 154 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC
Confidence 999999999999999988779999999999996 568999999999999766 559999999999999997643
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.9e-40 Score=258.13 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=139.2
Q ss_pred CceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 8 G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|+++|..+|++.++++++.+++.|+++++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC-eEEEeeCCcchhhHHhhhc
Q 031022 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY-TSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 88 a~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~ld~~~ 152 (167)
|+++++++|.+|+|||+|++||||||+++||+||++||+|++.+++ +.++|+|+..++++||+..
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~ 146 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY 146 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc
Confidence 9999999998888999999999999985689999999999999999 9999999999999999643
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.2e-39 Score=250.14 Aligned_cols=144 Identities=24% Similarity=0.318 Sum_probs=138.7
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC-eEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY-TSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+|.|||++++||||||+ +||+||++||+|++.+++ +.|+|+|+..++++||+..+
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~ 145 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT 145 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC
Confidence 99999999988899999999999997 589999999999999999 99999999999999997654
No 8
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.7e-39 Score=258.52 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=140.2
Q ss_pred ccC-CceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 5 EYN-GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 5 ~~~-G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
..+ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|..+|++.+++++|.+++.|+++++++++
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~ 104 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMP 104 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456 9999999999999999999998 68888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l--~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+|+++++++ |++| +|||+|++||||||+++||+||++||+|++.+++++++|+|+..++++||+..+
T Consensus 105 v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~ 178 (243)
T 1ryp_A 105 CDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK 178 (243)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhh
Confidence 999999999999 7776 799999999999997568999999999999999999999999999999997644
No 9
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.7e-39 Score=255.09 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=142.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhh-----hcC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----REE 79 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-----~~g 79 (167)
..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.|++++|.+++.|++ +++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCCHHHHHHHHHHHHHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCc
Q 031022 80 RDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 80 ~~~~~~~la~~i~~~l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
.+++++.+|+++++++|++| +|||++++||||||++++|+||++||+|++.++++.++|+|+..++++||+..+.
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 99999999999999999886 7999999999999976689999999999999999999999999999999976543
No 10
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=6e-39 Score=251.52 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=141.4
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhh-hcCCCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-REERDMK 83 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-~~g~~~~ 83 (167)
..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.|++++|.+++.|++ +++.+++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+|+++++++|++| +|||++++||||||+ ++|+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 155 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLE 155 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcC
Confidence 9999999999999886 799999999999996 48999999999999999999999999999999997654
No 11
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.4e-38 Score=246.94 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=138.9
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|+++++.+++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+|..||++++||||||++++|+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 145 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK 145 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC
Confidence 99999999887779999999999996568999999999999999999999999999999997653
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.5e-38 Score=244.31 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=140.5
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
...+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.++++++.+++.|++++++ ++
T Consensus 5 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~ 83 (205)
T 1ryp_H 5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PS 83 (205)
T ss_dssp CCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CC
T ss_pred CCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 45789999999999999999999999988899999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+|+++++++|.+|.+ |++++||||||++++|+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 84 v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 152 (205)
T 1ryp_H 84 TETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR 152 (205)
T ss_dssp HHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC
Confidence 999999999999988765 999999999997668999999999999999999999999999999997643
No 13
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.1e-38 Score=244.39 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=137.8
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+++++|.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+|. ||++++|+||||+++||+||.+||+|++.++++.++|+|+..++++||+..+
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~ 144 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR 144 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC
Confidence 999999998765 9999999999997668999999999999999999999999999999997654
No 14
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.5e-38 Score=244.64 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=137.8
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++.+++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+++++++|.+|.+||++++||||||+ +||+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 143 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY 143 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC
Confidence 99999999988789999999999997 5899999999999999999999999999999999753
No 15
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.8e-38 Score=250.42 Aligned_cols=148 Identities=22% Similarity=0.295 Sum_probs=139.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|++++++++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999988877799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCC-CCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDE-DKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|+++++++|.+ + .|||++++||||||++ ++|+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 177 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY 177 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhh
Confidence 99999999999865 2 5899999999999974 6899999999999999999999999999999999654
No 16
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.3e-38 Score=244.48 Aligned_cols=145 Identities=18% Similarity=0.306 Sum_probs=137.5
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-cC-CCcceEEEEEEEcC-CCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEK-RF-GPYFCQPVIAGLSD-EDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~-r~-rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+ +. +||++++||||||+ +++|+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~ 149 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR 149 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC
Confidence 9999999876 34 49999999999996 568999999999999999999999999999999997643
No 17
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.6e-38 Score=253.37 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=137.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++ .++.+||++|+++++|+++|..+|++.|+++++.+++.|+++++.++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999999999999999998877 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~~r----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+|+++++++|.++ +|||+|++||||||++++|+||++||+|++.++++.++|+|+..++++|++.
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 179 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 179 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHh
Confidence 999999999997553 6999999999999955689999999999999999999999999999999965
No 18
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.9e-38 Score=257.25 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=139.4
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|+|+++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv 151 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISV 151 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|+++++++|.+|.+||++++||||||+++||+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 152 ~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y 219 (287)
T 3nzj_K 152 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY 219 (287)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh
Confidence 99999999999998878999999999999767899999999999999999999999999999999654
No 19
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.8e-38 Score=252.72 Aligned_cols=149 Identities=12% Similarity=0.093 Sum_probs=140.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|+++++.++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~r----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++|.++ .|||+|++||||||+++||+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc
Confidence 999999999997653 689999999999997568999999999999999999999999999999997654
No 20
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5e-38 Score=250.04 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=139.4
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999877768899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~--~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|++++++++. + +.|||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+..+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK 180 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh
Confidence 9999999999954 3 3789999999999995568999999999999999999999999999999997654
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4.2e-38 Score=250.85 Aligned_cols=146 Identities=16% Similarity=0.279 Sum_probs=137.8
Q ss_pred CCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 031022 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (167)
Q Consensus 7 ~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~ 86 (167)
+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|+++++++++++.
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 113 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999998 57888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 87 FASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 87 la~~i~~~l--~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+|+++++++ |+++ +|||+|++||||||+++||+||++||+|++.+++++|+|+|+..++++||+..+
T Consensus 114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 184 (246)
T 1iru_A 114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184 (246)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhc
Confidence 999999985 6654 799999999999997568999999999999999999999999999999997654
No 22
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.6e-38 Score=256.28 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=141.9
Q ss_pred cCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhh-----hcCC
Q 031022 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----REER 80 (167)
Q Consensus 6 ~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-----~~g~ 80 (167)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|+++|..+|++.|++++|.+++.|++ +++.
T Consensus 39 ~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~ 118 (266)
T 1g0u_M 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE 118 (266)
T ss_dssp EEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred ccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCC
Confidence 47999999999999999999999998899999999999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHhcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcCc
Q 031022 81 DMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGNL 154 (167)
Q Consensus 81 ~~~~~~la~~i~~~l~~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~~ 154 (167)
+++++.+|+++++++|++| +|||++++||||||++++|+||++||+|++.++++.++|+|+..++++||+..+.
T Consensus 119 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 194 (266)
T 1g0u_M 119 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 194 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSS
T ss_pred CCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcc
Confidence 9999999999999999886 7999999999999976689999999999999999999999999999999976543
No 23
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.3e-37 Score=246.19 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=138.1
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++++++++|..+|++.++++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 467999999999999999999999985 6778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~r----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++|.++ .|||++++||||||+ +||+||.+||+|++.++++.++|+|+..++++||+..+
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 181 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK 181 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc
Confidence 999999999998542 589999999999997 58999999999999999999999999999999997643
No 24
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=6.6e-38 Score=250.17 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=137.7
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++++|..+|++.|+++++.+++.|++++++++++
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV 104 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 457999999999999999999999987 5777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|++++++++.+ + .|||+|++||||||++++|+||++||+|++.+++++++|+|+..++++||+..
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 176 (248)
T 1iru_D 105 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY 176 (248)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhh
Confidence 99999999999654 2 58999999999999656999999999999999999999999999999999753
No 25
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=9.4e-38 Score=246.92 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=137.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|..+|++.++++++.+++.|+++++.++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4579999999999999999999998 578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~--~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|++++++++ +++ +|||++++||||||+ +||+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 178 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc
Confidence 999999999994 443 699999999999995 58999999999999999999999999999999997654
No 26
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=6.1e-38 Score=249.27 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=138.6
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++ +++.+||++|+++++++++|..+|++.++++++.+++.|+++++.++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999999998777 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--------CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEK--R--------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++|.+ + .|||++++||||||++++|+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc
Confidence 99999999998753 1 679999999999996568999999999999999999999999999999997653
No 27
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.4e-37 Score=240.79 Aligned_cols=145 Identities=20% Similarity=0.296 Sum_probs=136.1
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-Hhcc-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALL-YEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l-~~~r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++.+ |..| .+||++++||||||++++|+||.+||+|++.++++.++|+|+..++++||+..+
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 148 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT 148 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc
Confidence 9999876 4433 479999999999997668999999999999999999999999999999997643
No 28
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.8e-37 Score=246.54 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=137.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+..+ +++.+||++|+++++++++|..+|++.++++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999999999999999998777 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc-------CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALL--YEKR-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l--~~~r-------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++ |+++ .|||++++|||||| +++|+||.+||+|++.++++.|+|+|+..++++||+..+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc
Confidence 99999999999 4333 57999999999999 468999999999999999999999999999999997643
No 29
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.2e-37 Score=246.67 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=135.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++.++ .+||++|+++++++++|..+|++.++++++.+++.|++++++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999999999999999998877654 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+|++++++++.+ + +|||++++||||||+ +||+||++||+|++.++++.|+|+|+..++++||++
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 175 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 175 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHh
Confidence 99999999999543 3 599999999999996 589999999999999999999999999999999985
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.9e-37 Score=243.91 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=137.4
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|+++++.+++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---CCCcceEEEEEEEcCCCC-----cEEEEECCCCceEEc--CeEEEeeCCcchhhHHhhhc
Q 031022 89 SLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKYVG--YTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 89 ~~i~~~l~~~r---~rP~~v~~ivaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+++++|.++ .|||+|++||||||++++ |+||++||+|++.++ ++.|+|+|+..++++||+..
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~ 154 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY 154 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc
Confidence 99999998753 789999999999998656 999999999999999 99999999999999999764
No 31
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4.6e-37 Score=247.21 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=136.5
Q ss_pred cccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 031022 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (167)
Q Consensus 4 ~~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~ 83 (167)
...+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++|+++|..+|++.++++++.+++.|+++++++++
T Consensus 25 av~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~ 104 (261)
T 3nzj_H 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR 104 (261)
T ss_dssp -----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 84 ~~~la~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
++.+|+++++.+|.+ .+||++++||||||++ ||+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 105 v~~~a~~l~~~l~~~-~~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 171 (261)
T 3nzj_H 105 VVSALQMLKQHLFKY-QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW 171 (261)
T ss_dssp HHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh-cCcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh
Confidence 999999999999876 3799999999999974 899999999999999999999999999999999754
No 32
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-37 Score=250.54 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=137.0
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++++|+++|..+|++.|++++|.+++.|+++++.++++
T Consensus 35 v~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v 113 (264)
T 3h4p_A 35 VRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISI 113 (264)
T ss_dssp HHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCH
Confidence 357999999999999999999999985 6778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~--r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|++++++++.+ + +|||+|++||||||+ +||+||++||+|++.+++++|+|+|+..++++||+..
T Consensus 114 ~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 184 (264)
T 3h4p_A 114 EMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEY 184 (264)
T ss_dssp HHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhc
Confidence 99999999998543 2 689999999999996 5899999999999999999999999999999999754
No 33
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=5.9e-37 Score=243.07 Aligned_cols=142 Identities=14% Similarity=0.144 Sum_probs=136.0
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++|+++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999989899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+++++++|.+ .+||++++||||||+ +||+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 81 ~~l~~~l~~~-~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 142 (234)
T 3unf_H 81 RILRQTLFRY-QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF 142 (234)
T ss_dssp HHHHHHHHHT-TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc
Confidence 9999999875 479999999999997 4899999999999999999999999999999999754
No 34
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.9e-37 Score=243.46 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=133.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+. .++.+||++|+++++++++|..+|++.++++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l---~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (233)
T 1ryp_F 28 IKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAV 104 (233)
T ss_dssp HHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHcCCCEEEEEcCCEEEEEEEecccccc---ccccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3579999999999999999999998864 2478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hc--cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~--~~--r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|++++++++ ++ +.|||+|++||||||+ .||+||++||+|++.++++.|+|+|+..++++||+..
T Consensus 105 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 175 (233)
T 1ryp_F 105 ERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 175 (233)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHh
Confidence 999999999994 33 3689999999999997 5899999999999999999999999999999999764
No 35
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=7e-37 Score=240.60 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=136.7
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++.+|.++ +||++++||||||+ +||+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 143 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK 143 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC
Confidence 99999998764 79999999999997 58999999999999999999999999999999997643
No 36
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3.5e-37 Score=250.99 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=136.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+.++.+ +.+||++|+++++|+++|..+|++.|++++|.+++.|+++++.++++
T Consensus 31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v 109 (288)
T 3nzj_F 31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 109 (288)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCH
Confidence 45899999999999999999999999877654 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhh
Q 031022 85 ETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCF 151 (167)
Q Consensus 85 ~~la~~i~~~l~~~----r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~ 151 (167)
+.+|+++++++|.+ ++|||+|++||||||+ +||+||++||+|++.+++++++|+|+..++++|++.
T Consensus 110 ~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~ 179 (288)
T 3nzj_F 110 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 179 (288)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHh
Confidence 99999999999654 2799999999999997 479999999999999999999999999999999976
No 37
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1e-36 Score=242.96 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=136.1
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+|+++++++|..+|++.++++++.+++.|+++++.++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 457999999999999999999999986 4558899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hcc--CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~--~~r--~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|++++++++ +++ .|||++++|||||| ++|+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR 180 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc
Confidence 999999999995 443 58999999999999 58999999999999999999999999999999997643
No 38
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=7.6e-37 Score=249.64 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=140.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++|+++|..+|++.|+++++.+++.|+++++.++++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv 141 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence 57899999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCCcceEEEEEEEcCCCC-----cEEEEECCCCceEEc--CeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKYVG--YTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~r---~rP~~v~~ivaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|+++++++|.++ .|||+|++||||||++++ |+||++||+|++.++ ++.++|+|+..++++||+..
T Consensus 142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y 219 (294)
T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY 219 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhc
Confidence 999999999998754 599999999999997656 999999999999999 99999999999999999764
No 39
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1e-36 Score=243.46 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=137.7
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHH-hhhhcCCCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKL-YQLREERDMK 83 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~-~~~~~g~~~~ 83 (167)
..+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|..+|++.++++++.+++. |++.++.+++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4679999999999999999999998 6788889999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhc----cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l~~~----r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.+++.++++++.. ++|||++++||||||++++|+||++||+|++.++++.|+|+|+..++++||+..+
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN 180 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc
Confidence 999999999988433 3689999999999997668999999999999999999999999999999997643
No 40
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.7e-36 Score=239.08 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=136.2
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.++++++.+++.|+++++++++++.+|
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+++++.+|.++ +||++++||||||+ +||+||++||+|++.++++.++|+|+..++++||+..+
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 143 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 143 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc
Confidence 99999998764 69999999999997 58999999999999999999999999999999997643
No 41
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.3e-36 Score=241.52 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=129.8
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-CCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMK 83 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g-~~~~ 83 (167)
..+|+|+|||+++||||||+|+| +++.+||++|+||++|+++|..+|++.|.+.++.+++.|++.++ .+++
T Consensus 24 v~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~ 95 (248)
T 3mi0_A 24 IARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVT 95 (248)
T ss_dssp HHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35799999999999999999998 35789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH---HhccCCCcceEEEEEEEcC---CCCcEEEEECCCCceE-EcCeEEEeeCCcchhhHHhhhcC
Q 031022 84 PETFASLVSALL---YEKRFGPYFCQPVIAGLSD---EDKPFICTMDSIGAKY-VGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 84 ~~~la~~i~~~l---~~~r~rP~~v~~ivaG~D~---~~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
++.||+++++.+ |++++|||+|++||||||+ ++||+||++||+|++. ++++.|+|+|+..++++|++..+
T Consensus 96 v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~ 172 (248)
T 3mi0_A 96 GRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA 172 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC
Confidence 999999999553 5556899999999999997 3689999999999999 49999999999999999997543
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.2e-36 Score=248.24 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=129.9
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|+++++|+++|..+|++.|+++++.+++.|++.++.++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 56899999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCCcceEEEEEEEcCCCC-----cEEEEECCCCceE--EcCeEEEeeCCcchhhHHhhhc
Q 031022 85 ETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKY--VGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 85 ~~la~~i~~~l~~~r---~rP~~v~~ivaG~D~~~g-----p~Ly~id~~G~~~--~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
+.+|+++++++|.++ +|||+|++||||||++++ |+||++||+|++. ++++.|+|+|+..++++||+..
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~ 211 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLY 211 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhc
Confidence 999999999998764 589999999999997656 9999999999998 8999999999999999999764
No 43
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.1e-36 Score=243.54 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=134.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 84 (167)
..+|+|+|||+++||||||+|+|.+.+. .++.+||++|+++++|+++|..+|++.|+++++.+++.|++++++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 3579999999999999999999999874 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEEEeeCCcchhhHHhhhcC
Q 031022 85 ETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 85 ~~la~~i~~~l~~~----r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ld~~~~ 153 (167)
+.+|+++++++|.+ ..|||+|++||||||+ +||+||++||+|++.+++++++|+|+..++++||+..+
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 177 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS 177 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhc
Confidence 99999999999643 2689999999999997 58999999999999999999999999999999997643
No 44
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5.7e-36 Score=231.21 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=132.6
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~la 88 (167)
||+|||+++||||||+|+|.+.+.++.+++.+||++|+|+++++++|..+|++.+++++|.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEEEEEcCCCCcEEEEECCCCceEEcCeEE-EeeCCcchhhHHhhhcC
Q 031022 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGYTSL-LVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 89 ~~i~~~l~~~r~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a-~G~g~~~~~~~ld~~~~ 153 (167)
+++++++|.+| |||++++||||||++++|+||+ |+|++.++...+ +|+|+..++++||+..+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~ 143 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK 143 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC
Confidence 99999999875 6999999999999867899999 999987666555 69999999999997643
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.3e-35 Score=236.11 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=129.5
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-CCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMK 83 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g-~~~~ 83 (167)
..+|+|+|||+++||||||+|+| +++.+||++|+||++|+++|..+|++.|+++++.+++.|++.++ .+++
T Consensus 24 v~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~ 95 (259)
T 1q5q_A 24 IARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVT 95 (259)
T ss_dssp HHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 46799999999999999999998 36789999999999999999999999999999999999999988 4999
Q ss_pred HHHHHHHHHHH---HHhccCCCcceEEEEEEEc--C-CCCcEEEEECCCCceE-EcCeEEEeeCCcchhhHHhhhc
Q 031022 84 PETFASLVSAL---LYEKRFGPYFCQPVIAGLS--D-EDKPFICTMDSIGAKY-VGYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 84 ~~~la~~i~~~---l~~~r~rP~~v~~ivaG~D--~-~~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~ld~~~ 152 (167)
++.+|++++++ .|++++|||+|++|||||| + ++||+||++||+|++. ++++.++|+|+..++++||+..
T Consensus 96 v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~ 171 (259)
T 1q5q_A 96 GRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESY 171 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhc
Confidence 99999999996 3666789999999999999 3 4689999999999999 8899999999999999999754
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=4.1e-32 Score=207.22 Aligned_cols=137 Identities=9% Similarity=0.125 Sum_probs=121.1
Q ss_pred ccCCceEEEEEeCCEEEEEEeCCcccCce-eecCCcCceEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCC
Q 031022 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQ-TIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (167)
Q Consensus 5 ~~~G~tvigik~~dgVvlaad~~~~~~~~-i~~~~~~KI~~i-~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~ 82 (167)
..+|+|+|||+++||||||+|+|++.+.+ +.+++.+||++| +++++++++|..+|++.|.++++.+++.|+ + +
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 36899999999999999999999999877 999999999999 999999999999999999999999999988 3 3
Q ss_pred CHHHHHHHHHHHHHhcc-CCCcceEEEEEEEcCCCCcEEEEECCCCceEE--cCeEEEeeCCcchhhHHhhhc
Q 031022 83 KPETFASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYV--GYTSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 83 ~~~~la~~i~~~l~~~r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~ld~~~ 152 (167)
.++..+ .+++.++..+ .|||++++||| | +|+||++||+|++.+ +++.|+|+|+..++++||.+.
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~ 143 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK 143 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhh
Confidence 344433 4666666555 58999999999 4 699999999999998 499999999999999999764
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-32 Score=205.82 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=120.0
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i-~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
+|+|||+++||||||+|+|.+.+.++.+++.+||++| +++++++++|..+|++.+.+++|.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999889999999999999 99999999999999999999999999998854 36666
Q ss_pred HHHHHHHHHhcc-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC--eEEEeeCCcchhhHHhhhc
Q 031022 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY--TSLLVYFPSKKYCFLDCFG 152 (167)
Q Consensus 88 a~~i~~~l~~~r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~ld~~~ 152 (167)
++. .+.+++++ .|||++++|+| | +|+||++||+|++.+++ +.++|+|+..++++||+..
T Consensus 76 ~~l-~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~ 137 (171)
T 1m4y_A 76 VEL-AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL 137 (171)
T ss_dssp HHH-HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhc
Confidence 665 44666666 46899999998 5 79999999999999988 9999999999999999764
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.97 E-value=1.6e-31 Score=202.77 Aligned_cols=134 Identities=9% Similarity=0.087 Sum_probs=120.9
Q ss_pred ceEEEEEeCCEEEEEEeCCcccCceeecCCcCceEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 031022 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (167)
Q Consensus 9 ~tvigik~~dgVvlaad~~~~~~~~i~~~~~~KI~~i-~d~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~~~l 87 (167)
+|+|||+++||||||+|+|++.+.++.+++.+||++| +++++++++|..+|++.|.+++|.+++.|++ +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999889999999999999 9999999999999999999999999999985 55667
Q ss_pred HHHHHHHHHhcc-CCCcceEEEEEEEcCCCCcEEEEECCCCceEEcC---eEEEeeCCcchhhHHhhhcC
Q 031022 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKYVGY---TSLLVYFPSKKYCFLDCFGN 153 (167)
Q Consensus 88 a~~i~~~l~~~r-~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~~~~~ld~~~~ 153 (167)
+..+++.++.+| .|| ++++++|+| +|+||++||+|++.+++ +.|+|+|+..++++||...+
T Consensus 75 ~~~l~~~~~~~~~~r~--~~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~ 139 (174)
T 1g3k_A 75 AVELAKDWRTDRALRK--LEAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE 139 (174)
T ss_dssp HHHHHHHHHHSTTGGG--CCCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcCc--ceEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcc
Confidence 777888888776 456 457788887 69999999999999988 99999999999999997643
No 49
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=25.89 E-value=77 Score=21.99 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=30.7
Q ss_pred ecChhhHHHHHHHHHHHH-H--Hhhhhc-------CCCCCHHHHHHHHHHHHHhc
Q 031022 54 SGLATDSQTLYQRLVFRH-K--LYQLRE-------ERDMKPETFASLVSALLYEK 98 (167)
Q Consensus 54 sG~~aD~~~l~~~~r~~~-~--~~~~~~-------g~~~~~~~la~~i~~~l~~~ 98 (167)
.|..-|+..+.+.++..+ . .|++.+ +..++.+.+|.+|.+.+...
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~ 116 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRL 116 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 456668888888777622 2 233333 34689999999999998643
No 50
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=22.23 E-value=1.5e+02 Score=21.65 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHh
Q 031022 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYE 97 (167)
Q Consensus 61 ~~l~~~~r~~~~~~~~~~g~~~~~~~la~~i~~~l~~ 97 (167)
+.+++++++.+............+-.+.+++|+++|.
T Consensus 125 Rtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFv 161 (183)
T 2zhy_A 125 RTVCRRAERSIVALGASEPLNAAPRRYVNRLSDLLFV 161 (183)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 4555655555544333333445567788999999863
Done!