BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031023
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 26 SNTRLQVHGELDT-RVGAPSYVSAMIRHFYPDLSASFGLGVQYDK 69
S+ L G LD R G P+Y R F+ DLSA L +D
Sbjct: 117 SHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDA 161
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 26 SNTRLQVHGELDT-RVGAPSYVSAMIRHFYPDLSASFGLGVQYDK 69
S+ L G LD R G P+Y R F+ DLSA L +D
Sbjct: 117 SHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDA 161
>pdb|3GLD|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
Length = 295
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 113 AAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWN 162
AEF +S F+K +K+ E +DKVP + ++TV WN
Sbjct: 82 TAEFDFSEVTFEKPGVYYYKVTAEKIDKVPGVSYDTTSYTVQVHV--LWN 129
>pdb|3GLE|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
pdb|3GLE|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
pdb|3GLE|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
Length = 295
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 113 AAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWN 162
AEF +S F+K +K+ E +DKVP + ++TV WN
Sbjct: 82 TAEFDFSEVTFEKPGVYYYKVTEEKIDKVPGVSYDTTSYTVQVHV--LWN 129
>pdb|3B2M|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
pdb|3B2M|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
pdb|3B2M|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
Length = 295
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 113 AAEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWN 162
AEF +S F+K +K+ E +DKVP + ++TV WN
Sbjct: 82 TAEFDFSEVTFEKPGVYYYKVTEEKIDKVPGVSYDTTSYTVQVHV--LWN 129
>pdb|3EQU|A Chain A, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae
pdb|3EQU|B Chain B, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae
Length = 542
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 57 LSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLL 91
LSA FG YD + +L VR FP + GLL
Sbjct: 331 LSARFGAEEXYDFYHELGIGVRXHSGFPGETAGLL 365
>pdb|2KLA|A Chain A, Nmr Structure Of A Putative Dinitrogenase (Mj0327) From
Methanococcus Jannaschii
Length = 106
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 6 RYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAP 43
Y K SK + IY E +D N L + GEL +++ P
Sbjct: 70 NYKKFSKKIEIYHAEGDDVDKNISLFIEGEL-SKISNP 106
>pdb|2QTD|A Chain A, Crystal Structure Of A Putative Dinitrogenase (Mj0327)
From Methanocaldococcus Jannaschii Dsm At 1.70 A
Resolution
Length = 105
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 6 RYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAP 43
Y K SK + IY E +D N L + GEL +++ P
Sbjct: 69 NYKKFSKKIEIYHAEGDDVDKNISLFIEGEL-SKISNP 105
>pdb|3EQV|A Chain A, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae Containing Four Mutations
Associated With Penicillin Resistance
pdb|3EQV|B Chain B, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae Containing Four Mutations
Associated With Penicillin Resistance
Length = 542
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 57 LSASFGLGVQYDKHEKLRYTVRGKKVFPVTSTGLL 91
LSA FG YD + +L VR FP + GLL
Sbjct: 331 LSARFGAEEMYDFYHELGIGVRMHSGFPGETAGLL 365
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 131 FKLGYEVVDKVPYMQIRENNWTVNAD 156
+KLGYE+VD + R WT N D
Sbjct: 209 YKLGYELVDGTTPEKYRSIWWTTNKD 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,122,964
Number of Sequences: 62578
Number of extensions: 200796
Number of successful extensions: 364
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 18
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)