Query 031023
Match_columns 167
No_of_seqs 28 out of 30
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y8g_A Ranbp3-B, RAN-binding p 53.0 33 0.0011 25.7 6.0 33 123-155 61-93 (138)
2 1wmx_A COG3291: FOG: PKD repea 43.0 3.1 0.0001 34.6 -1.3 59 73-131 66-138 (205)
3 2crf_A RAN binding protein 3; 40.9 34 0.0012 26.1 4.4 32 124-155 74-105 (150)
4 3qra_A AIL, attachment invasio 23.5 2.3E+02 0.0077 20.9 7.2 18 87-104 24-41 (157)
5 1vrb_A Putative asparaginyl hy 19.8 61 0.0021 27.3 2.7 27 60-86 151-177 (342)
6 2ra9_A Uncharacterized protein 19.2 88 0.003 24.4 3.3 19 135-153 111-129 (150)
7 3ivv_A Speckle-type POZ protei 18.9 1.1E+02 0.0038 21.7 3.6 41 114-159 11-54 (145)
8 3a0y_A Sensor protein; ATP-LID 18.3 91 0.0031 21.0 2.9 59 5-69 60-119 (152)
9 3tg7_A Hexon protein, late pro 18.1 89 0.0031 31.0 3.7 39 70-108 72-115 (951)
10 2w7v_A General secretion pathw 16.8 91 0.0031 22.4 2.7 17 3-19 30-46 (95)
No 1
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=52.98 E-value=33 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=28.3
Q ss_pred ccccceeEEEeceeecccccceEeeecceEEee
Q 031023 123 FQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNA 155 (167)
Q Consensus 123 F~~dQDvRLk~Gy~v~~~~PY~qiRENNWt~n~ 155 (167)
...||.+|+-+-.-+...|+|-+..++.|.+.+
T Consensus 61 mR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~ 93 (138)
T 2y8g_A 61 MRTQGSLRLILNTKLWAQMQIDKASEKSIRITA 93 (138)
T ss_dssp EEETTTCCEEEEEECCTTCCEEEEETTEEEEEC
T ss_pred EEEcCcceEEEeeEecCCceeecCCCCEEEEEE
Confidence 456788888888888899999988899999986
No 2
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
Probab=43.03 E-value=3.1 Score=34.57 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=38.1
Q ss_pred eEEEEeeeeeeeecC---CceeEEEEeeee---eeCccc----ccccceeeEEEEEEeecc----cccceeEE
Q 031023 73 LRYTVRGKKVFPVTS---TGLLSFNIKGRC---EVDKEF----KQRKSRGAAEFSWSIFNF----QKDQDVRF 131 (167)
Q Consensus 73 l~y~v~~KK~~~v~~---ngl~~~~lKg~~---~~d~~~----~~~~~~G~vels~~IfnF----~~dQDvRL 131 (167)
..|++++=+.+.++. ||.|-|||||.. +|=..+ .++...=.+++.-.|-++ ++=|-|.+
T Consensus 66 ~~~~l~~w~~~DLs~y~~nG~leF~IKG~~GGE~~~ig~~D~~~e~~~g~~~~~~~~~~~yi~VttEwQHvsi 138 (205)
T 1wmx_A 66 SLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYERVYGLEIDVTTVISNYVTVTTDWQHVKI 138 (205)
T ss_dssp EEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTCTTCSSCEEEEEGGGTCCCCSSCEEEEE
T ss_pred EEEeccCcceeehhhhhcCCeEEEEEecccCceeEEEEEecccccccCCceeEEEeechheEEeccccEEEEe
Confidence 678999999999975 999999998753 221111 122333345666666666 55566655
No 3
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=40.91 E-value=34 Score=26.13 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=27.8
Q ss_pred cccceeEEEeceeecccccceEeeecceEEee
Q 031023 124 QKDQDVRFKLGYEVVDKVPYMQIRENNWTVNA 155 (167)
Q Consensus 124 ~~dQDvRLk~Gy~v~~~~PY~qiRENNWt~n~ 155 (167)
..||.+|+-+-.-+...|+|-+..++.|.+.+
T Consensus 74 R~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~ 105 (150)
T 2crf_A 74 RTQGSLRLILNTKLWAQMQIDKASEKSIHITA 105 (150)
T ss_dssp EESSSCCEEEEEECCTTCCEECCSSSEEEEEE
T ss_pred EEcCcceEEeeeeccCCceeecCCCCEEEEEe
Confidence 46788888888888899999888899999986
No 4
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=23.47 E-value=2.3e+02 Score=20.93 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.0
Q ss_pred CCceeEEEEeeeeeeCcc
Q 031023 87 STGLLSFNIKGRCEVDKE 104 (167)
Q Consensus 87 ~ngl~~~~lKg~~~~d~~ 104 (167)
++-..+++|++++++++.
T Consensus 24 ~~~~~G~~~~~gY~~~~~ 41 (157)
T 3qra_A 24 DKNPRGFNLKYRYEFNND 41 (157)
T ss_dssp BCCCEEEEEEEEEESSSS
T ss_pred ccCCCEEEEEEeeecCCC
Confidence 344678899999998876
No 5
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=19.78 E-value=61 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=22.9
Q ss_pred ccccceeEeeCCceEEEEeeeeeeeec
Q 031023 60 SFGLGVQYDKHEKLRYTVRGKKVFPVT 86 (167)
Q Consensus 60 ~lg~Gv~y~~~~~l~y~v~~KK~~~v~ 86 (167)
.-+++.+||..+.+.++|.|+|.+.+-
T Consensus 151 g~~~~~H~D~~dnfl~Qv~G~Krw~L~ 177 (342)
T 1vrb_A 151 GGGFKAHFDAYTNLIFQIQGEKTWKLA 177 (342)
T ss_dssp SCCCCSEECSSEEEEEEEESCEEEEEE
T ss_pred CCCCCCeECChhcEEEEEEEEEEEEEe
Confidence 445678888888999999999999975
No 6
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=19.19 E-value=88 Score=24.38 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=14.5
Q ss_pred eeecccccceEeeecceEE
Q 031023 135 YEVVDKVPYMQIRENNWTV 153 (167)
Q Consensus 135 y~v~~~~PY~qiRENNWt~ 153 (167)
+.+.++.||.++|.|-|..
T Consensus 111 l~~~e~~pYv~vR~gl~Ar 129 (150)
T 2ra9_A 111 MKLTDDSVYLPLERGLWGK 129 (150)
T ss_dssp CEECSSCEEEECSTTCEEE
T ss_pred cEecCCEEEEEecCCCEEE
Confidence 3444799999999996654
No 7
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=18.93 E-value=1.1e+02 Score=21.68 Aligned_cols=41 Identities=27% Similarity=0.576 Sum_probs=26.3
Q ss_pred EEEEEEeecccccceeEEEeceeecccccceEeeec---ceEEeeccCC
Q 031023 114 AEFSWSIFNFQKDQDVRFKLGYEVVDKVPYMQIREN---NWTVNADANG 159 (167)
Q Consensus 114 vels~~IfnF~~dQDvRLk~Gy~v~~~~PY~qiREN---NWt~n~~~~g 159 (167)
..+.|+|-||..-.+ ..| + .-..|-+.+... .|.+..+++|
T Consensus 11 ~~~~w~I~~fs~~~~---~~g-~-~~~S~~F~~gg~~g~~W~i~~yP~G 54 (145)
T 3ivv_A 11 FSYMWTINNFSFCRE---EMG-E-VIKSSTFSSGANDKLKWCLRVNPKG 54 (145)
T ss_dssp EEEEEEESSGGGCCC---CTT-C-CEECCCEEESGGGCEEEEEEEETTC
T ss_pred EEEEEEEcCchHHhh---cCC-C-EEECCCcCCCCcCCceEEEEEEcCC
Confidence 467899999987432 123 1 223455666554 7888888877
No 8
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=18.34 E-value=91 Score=20.97 Aligned_cols=59 Identities=14% Similarity=0.335 Sum_probs=36.0
Q ss_pred EEeecCCceeeeeeeeecccCCcceEEEEEeeecCCCCc-hhhhhHhhhhcCCcccccccceeEee
Q 031023 5 LRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAP-SYVSAMIRHFYPDLSASFGLGVQYDK 69 (167)
Q Consensus 5 Lry~~~~k~L~ihAKek~~~d~~~~Lqv~g~Ldt~~g~~-~~~a~l~r~F~p~l~~~lg~Gv~y~~ 69 (167)
++|...+..+.|++.+ .+..+.+.|. |+..|-| +-...+...||..-+...|+|+...+
T Consensus 60 i~~~~~~~~I~i~~~~---~~~~~~i~i~---D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~ 119 (152)
T 3a0y_A 60 IEATGENGKIKITSED---MYTKVRVSVW---NSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICR 119 (152)
T ss_dssp HHHHCTTCEEEEEEEE---CSSEEEEEEE---EESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHH
T ss_pred HHhcCCCCEEEEEEEe---cCCEEEEEEE---eCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHH
Confidence 3454455678887765 2445666654 6777765 55667777777655556677776653
No 9
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with NEW finding featuring PO binding to human coagulation factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A 1vsz_A 3iyn_A 1p2z_A* 2obe_A
Probab=18.09 E-value=89 Score=31.00 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCceEEEEeeeeeeeecCCcee-----EEEEeeeeeeCcccccc
Q 031023 70 HEKLRYTVRGKKVFPVTSTGLL-----SFNIKGRCEVDKEFKQR 108 (167)
Q Consensus 70 ~~~l~y~v~~KK~~~v~~ngl~-----~~~lKg~~~~d~~~~~~ 108 (167)
.+|-.|+-.++=++.|.||.+| =|+|||-+|=+|-||+=
T Consensus 72 rEDt~ySYK~RFtLaVGDNRVLDMaSTYFDIRGVLDRGPSFKPY 115 (951)
T 3tg7_A 72 REDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPY 115 (951)
T ss_dssp EEECSSEEEEEEEEEECTTCCEEGGGCEEEEEEEEECCTTCBCS
T ss_pred cccCcceeEEEEEEEecCCceeeccccceeeeeeecCCCCCCCC
Confidence 5677888899999999999876 48999999999999874
No 10
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=16.76 E-value=91 Score=22.39 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=13.5
Q ss_pred ceEEeecCCceeeeeee
Q 031023 3 TSLRYGKDSKALRIYAK 19 (167)
Q Consensus 3 TsLry~~~~k~L~ihAK 19 (167)
+||+||.....|+|-|.
T Consensus 30 ~sLryD~~R~ELrlq~~ 46 (95)
T 2w7v_A 30 TSFKYDGQRGEVRIHAR 46 (95)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCCeEEEEEe
Confidence 58999999888888543
Done!