Query 031023
Match_columns 167
No_of_seqs 28 out of 30
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 12:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crfa1 b.55.1.3 (A:8-144) Ran 30.6 30 0.0022 23.8 4.4 33 123-155 66-98 (137)
2 d1vrba1 b.82.2.11 (A:8-326) Pu 28.2 17 0.0012 26.6 2.7 28 59-86 131-158 (319)
3 d1cb8a3 b.30.5.2 (A:336-599) C 25.9 50 0.0036 25.3 5.3 22 76-97 120-143 (264)
4 d2c2aa2 d.122.1.3 (A:321-481) 17.9 33 0.0024 23.5 2.4 51 13-69 73-130 (161)
5 d1evha_ b.55.1.4 (A:) Enabled 17.5 1.1E+02 0.0077 20.0 5.0 64 100-165 14-90 (111)
6 d1p2za1 b.121.2.2 (A:5-650) Ad 15.8 53 0.0038 29.1 3.7 40 70-109 68-112 (646)
7 d1nkga2 b.18.1.25 (A:338-508) 15.8 40 0.0029 24.7 2.5 32 128-167 39-70 (171)
8 d1ysra1 d.122.1.3 (A:299-446) 14.8 50 0.0037 22.3 2.7 59 4-69 56-118 (148)
9 d1n7oa3 b.30.5.2 (A:541-814) H 14.2 2.2E+02 0.016 21.4 6.7 23 75-97 122-146 (274)
10 d1bxda_ d.122.1.3 (A:) Histidi 12.4 39 0.0029 23.3 1.5 57 5-69 60-121 (161)
No 1
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.61 E-value=30 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=26.3
Q ss_pred ccccceeEEEeceeecccccceEeeecceEEee
Q 031023 123 FQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNA 155 (167)
Q Consensus 123 F~~dQDvRLk~Gy~v~~~~PY~qiRENNWt~n~ 155 (167)
...+|-.|+-+=.-+...|+|-...+++|.|.+
T Consensus 66 mR~~~~~kv~lN~~i~~~m~~~~~~~k~v~~~~ 98 (137)
T d2crfa1 66 MRTQGSLRLILNTKLWAQMQIDKASEKSIHITA 98 (137)
T ss_dssp EEESSSCCEEEEEECCTTCCEECCSSSEEEEEE
T ss_pred EEECCCCeEEEeCEECCCCccccCCCCEEEEEe
Confidence 345777777777778889999888899999886
No 2
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
Probab=28.24 E-value=17 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=23.6
Q ss_pred cccccceeEeeCCceEEEEeeeeeeeec
Q 031023 59 ASFGLGVQYDKHEKLRYTVRGKKVFPVT 86 (167)
Q Consensus 59 ~~lg~Gv~y~~~~~l~y~v~~KK~~~v~ 86 (167)
...+.+.+||..+.+.+.|+|+|.+-+-
T Consensus 131 ~g~~~~~H~D~~d~f~~Qv~G~K~W~L~ 158 (319)
T d1vrba1 131 NGGGFKAHFDAYTNLIFQIQGEKTWKLA 158 (319)
T ss_dssp SSCCCCSEECSSEEEEEEEESCEEEEEE
T ss_pred CCCCCccccCCCceeEEeecceEEEEEe
Confidence 4456788898888999999999999873
No 3
>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=25.87 E-value=50 Score=25.29 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred EEeeeeeeeecCCcee--EEEEee
Q 031023 76 TVRGKKVFPVTSTGLL--SFNIKG 97 (167)
Q Consensus 76 ~v~~KK~~~v~~ngl~--~~~lKg 97 (167)
+++|||...+.+|.++ +-+|.+
T Consensus 120 ~l~AkKSwF~~dd~iV~LGsgI~~ 143 (264)
T d1cb8a3 120 SLQAKKAWFFFDKEIVCLGAGINS 143 (264)
T ss_dssp TEEEEEEEEECSSCEEEEEEEEEE
T ss_pred CcEEEEEEEEECCEEEEEeccccC
Confidence 5889999999999864 445544
No 4
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=17.86 E-value=33 Score=23.49 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=34.5
Q ss_pred eeeeeeeeecccCCcceEEEEEeeecCCCCc-hhhhhHhhhhcCC------cccccccceeEee
Q 031023 13 ALRIYAKEKIPIDSNTRLQVHGELDTRVGAP-SYVSAMIRHFYPD------LSASFGLGVQYDK 69 (167)
Q Consensus 13 ~L~ihAKek~~~d~~~~Lqv~g~Ldt~~g~~-~~~a~l~r~F~p~------l~~~lg~Gv~y~~ 69 (167)
.+.|++.+. +..+.+.|+ |+..|-| +-+..+...||.- -....|+|++..+
T Consensus 73 ~i~i~~~~~---~~~~~i~V~---D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k 130 (161)
T d2c2aa2 73 YVKVILDEK---DGGVLIIVE---DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITK 130 (161)
T ss_dssp EEEEEEEEE---TTEEEEEEE---ECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHH
T ss_pred eeeEEEEec---CCEEEEEEE---EcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHH
Confidence 466666553 566777775 9999976 7788888888821 1234678888775
No 5
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.51 E-value=1.1e+02 Score=19.99 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=40.8
Q ss_pred eeCcccccccceee------EEEE-------EEeecccccceeEEEeceeecccccceEeeecceEEeeccCCeeEEEE
Q 031023 100 EVDKEFKQRKSRGA------AEFS-------WSIFNFQKDQDVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRY 165 (167)
Q Consensus 100 ~~d~~~~~~~~~G~------vels-------~~IfnF~~dQDvRLk~Gy~v~~~~PY~qiRENNWt~n~~~~g~W~VrY 165 (167)
-||+..++|+.+|. |.+- +.|. -..+||.++-+=..+...+.|-+.++.-+++-+ -+-.|.++|
T Consensus 14 ~~d~~~~~Wk~rG~g~~~~~v~il~~~~~~~~Riv-mrr~~~~kv~~N~~i~~~~~y~~~~~~~~~w~~-~~~~fglrF 90 (111)
T d1evha_ 14 VYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVV-GRKIQDHQVVINCAIPKGLKYNQATQTFHQWRD-ARQVYGLNF 90 (111)
T ss_dssp EEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEE-EEETTTCCEEEEEEECTTCCCBCCSSSEEEEEC-SSCEEEEEE
T ss_pred EEeCCCCcccccCCCceeEEEEEEEeCCCCEEEEE-EEEccCCeEEEEEeccCccceecCCCceEEEec-CceEEEEEc
Confidence 35666666665542 3332 2232 246889999999999999999888776665543 344566655
No 6
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]}
Probab=15.81 E-value=53 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCceEEEEeeeeeeeecCCcee-----EEEEeeeeeeCccccccc
Q 031023 70 HEKLRYTVRGKKVFPVTSTGLL-----SFNIKGRCEVDKEFKQRK 109 (167)
Q Consensus 70 ~~~l~y~v~~KK~~~v~~ngl~-----~~~lKg~~~~d~~~~~~~ 109 (167)
.+|-.|+-+++=++.|.||.+| =|+|||-+|=+|-|||=.
T Consensus 68 ~eDt~~sYk~RftL~VGDnrVLDMgSTYFDIrGvLDRGPSFKPYs 112 (646)
T d1p2za1 68 REDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYS 112 (646)
T ss_dssp EEECSSEEEEEEEEEECTTCCEEGGGEEEEEEEEEECCTTCBCSS
T ss_pred ccCCCceEEEEEEEeeCccceeecccccccccccccCCCCCCCCC
Confidence 4567788888889999998866 489999999999998743
No 7
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=15.80 E-value=40 Score=24.70 Aligned_cols=32 Identities=9% Similarity=0.373 Sum_probs=20.5
Q ss_pred eeEEEeceeecccccceEeeecceEEeeccCCeeEEEEeC
Q 031023 128 DVRFKLGYEVVDKVPYMQIRENNWTVNADANGRWNVRYDL 167 (167)
Q Consensus 128 DvRLk~Gy~v~~~~PY~qiRENNWt~n~~~~g~W~VrYDL 167 (167)
++-..||-.=..--||+|.. +.++.|+|+|+|
T Consensus 39 ~l~ytVG~Sd~~Dw~~a~~~--------~~~~~w~I~F~L 70 (171)
T d1nkga2 39 PLTYTVGSSALTDFPMAVFK--------SVNNPVTIKFTA 70 (171)
T ss_dssp SCEEETTTSCGGGSBSEEET--------TTTCCEEEEEEE
T ss_pred CcEEEeCCCCcccccEEEEc--------CCCCCEEEEEEc
Confidence 46677785434578999964 344556666654
No 8
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.84 E-value=50 Score=22.30 Aligned_cols=59 Identities=15% Similarity=0.305 Sum_probs=35.7
Q ss_pred eEEeecCCceeeeeeeeecccCCcceEEEEEeeecCCCCc-hhhhhHhhhhcCCc---ccccccceeEee
Q 031023 4 SLRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAP-SYVSAMIRHFYPDL---SASFGLGVQYDK 69 (167)
Q Consensus 4 sLry~~~~k~L~ihAKek~~~d~~~~Lqv~g~Ldt~~g~~-~~~a~l~r~F~p~l---~~~lg~Gv~y~~ 69 (167)
+++|... ..+.|.+.+. +..+.+.|. |+..|-| +.+.++...||..- ....|+|++..+
T Consensus 56 Aiky~~~-~~I~i~~~~~---~~~~~i~V~---D~G~Gi~~~~~~~ife~f~r~~~~~~~G~GLGL~i~~ 118 (148)
T d1ysra1 56 AVKHGGA-TLVQLSAVSS---RAGVEIAID---DNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVA 118 (148)
T ss_dssp HHHTTCC-SEEEEEEEEE---TTEEEEEEE---ESSSCCCGGGHHHHHTSCC-----------CCCHHHH
T ss_pred HHHhcCC-cEEEEEEEec---CCEEEEEEE---EcCCCCCHHHHHHhcCccccCCCCCCCCccHHHHHHH
Confidence 3456433 4567766553 556677765 9999976 88888988898422 234677777765
No 9
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=14.18 E-value=2.2e+02 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.4
Q ss_pred EEEeeeeeeeecCCcee--EEEEee
Q 031023 75 YTVRGKKVFPVTSTGLL--SFNIKG 97 (167)
Q Consensus 75 y~v~~KK~~~v~~ngl~--~~~lKg 97 (167)
.+++|||...+.+|.++ +-+|.+
T Consensus 122 ~~l~AkKSwFf~dd~iV~LGsgI~s 146 (274)
T d1n7oa3 122 QTLTAHKSWFMLKDKIAFLGSNIQN 146 (274)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEEccccC
Confidence 36889999988888864 445544
No 10
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=12.41 E-value=39 Score=23.28 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=38.1
Q ss_pred EEeecCCceeeeeeeeecccCCcceEEEEEeeecCCCCc-hhhhhHhhhhcCCc----ccccccceeEee
Q 031023 5 LRYGKDSKALRIYAKEKIPIDSNTRLQVHGELDTRVGAP-SYVSAMIRHFYPDL----SASFGLGVQYDK 69 (167)
Q Consensus 5 Lry~~~~k~L~ihAKek~~~d~~~~Lqv~g~Ldt~~g~~-~~~a~l~r~F~p~l----~~~lg~Gv~y~~ 69 (167)
++|. +..+.|.+... +..+.+.|. |+..|-| +.+.++-..||--- .-..|+|+++.+
T Consensus 60 ik~~--~~~i~i~~~~~---~~~~~i~V~---D~G~GI~~e~~~~iF~~F~r~~~~~~~~g~GLGL~ivk 121 (161)
T d1bxda_ 60 ARYG--NGWIKVSSGTE---PNRAWFQVE---DDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQ 121 (161)
T ss_dssp HTTC--CSCEEEEEEEE---TTEEEEEEE---EESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTH
T ss_pred HHhC--CCeEEEEEEEe---CCEEEEEEE---EcCCCCCHHHHHHHhCCceECCCCCcCCCCCchHHHHH
Confidence 4564 24567766543 456777776 9999975 88888988888321 123578888775
Done!