BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031027
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJK|A Chain A, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
pdb|2OJK|B Chain B, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
Length = 229
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 40 DCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKS 86
+C H K Y N A V+KK+++ W+ K+ P+ P + LK
Sbjct: 116 NCMYHESKFYGVNFPADGPVMKKMTDNWEPSCEKIIPV-PKQGILKG 161
>pdb|2PXS|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXS|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXW|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
pdb|2PXW|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
Length = 227
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 40 DCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKS 86
+C H K Y N A V+KK+++ W+ K+ P+ P + LK
Sbjct: 114 NCMYHESKFYGVNFPADGPVMKKMTDNWEPSCEKIIPV-PKQGILKG 159
>pdb|2FL1|A Chain A, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|B Chain B, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|C Chain C, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|D Chain D, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
Length = 226
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 40 DCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLD 78
+C H Y N A V+KK++ W+ K+ P++
Sbjct: 113 NCIYHESTFYGVNFPADGPVMKKMTTNWEPSCEKIIPIN 151
>pdb|2ICR|A Chain A, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|B Chain B, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|C Chain C, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|D Chain D, Red Fluorescent Protein Zrfp574 From Zoanthus Sp
Length = 237
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 40 DCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLD 78
+C H Y N A V+KK++ W+ K+ P++
Sbjct: 124 NCIYHESTFYGVNFPADGPVMKKMTTNWEPSCEKIIPIN 162
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 26.6 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 7 QILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEE 66
++L F GE P + +E + C+ S +K L+E E +V++ K
Sbjct: 701 KVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWEN--ETNVELRKGFEVH 758
Query: 67 WKEHS 71
W E++
Sbjct: 759 WAEYN 763
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1 MKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYK 43
+ + SL I+ F ++ +G + + CLT +A+C K
Sbjct: 180 VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,166,893
Number of Sequences: 62578
Number of extensions: 132645
Number of successful extensions: 358
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 13
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)