BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031027
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IVG4|ACAP2_RABIT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing
protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1
Length = 778
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 54 EASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAARQSL 106
E KV+ K SEE + KL P D R +++S + N+ GI ++D R+SL
Sbjct: 524 EQEKKVVSKDSEEKRLSIPKLGPGDQVRTSIQSSVKSNDSGIQQSSDDGRESL 576
>sp|Q8ZXL4|NADE_PYRAE NH(3)-dependent NAD(+) synthetase OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=nadE PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 52 NLEASVKVLKKLSEEWKEHSAKLSPL-DPFRATLKSFRQKNEKGIGGTADAARQSLL-RN 109
+L+ ++ V+ L EWK ++P+ D F TL F Q+N G R ++L
Sbjct: 75 DLKDALDVINALGVEWKR--VDITPIYDAFVKTLPDFSQENRVAAGNILPRIRMTVLYYY 132
Query: 110 ADKYCKLVSG 119
A+KY LV G
Sbjct: 133 ANKYNLLVMG 142
>sp|Q9U6Y5|GFPL1_ZOASP GFP-like fluorescent chromoprotein FP506 OS=Zoanthus sp. PE=1 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 40 DCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKS 86
+C H K Y N A V+KK+++ W+ K+ P+ P + LK
Sbjct: 118 NCMYHESKFYGVNFPADGPVMKKMTDNWEPSCEKIIPV-PKQGILKG 163
>sp|Q15057|ACAP2_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing
protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3
Length = 778
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 54 EASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAARQSL 106
E K + K SEE + +K P D RA+ +S + N+ GI ++D R+SL
Sbjct: 524 EQQKKFVSKSSEEKRLSISKFGPGDQVRASAQSSVRSNDSGIQQSSDDGRESL 576
>sp|Q2NIN3|SYD_AYWBP Aspartate--tRNA ligase OS=Aster yellows witches'-broom phytoplasma
(strain AYWB) GN=aspS PE=3 SV=1
Length = 576
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 80 FRATLKSFRQKNEKGIGGTADAAR-QSLLRNADKYCKLVSGKLSSSHGCLKSVALAVIAI 138
F L SF +KN+K IGG + + S L+N ++ C +VSGK H K++ + +
Sbjct: 343 FNLKLFSFVKKNDKIIGGISQFIQDDSFLKN-EEICFVVSGKKDIIH---KALGIFRTKL 398
Query: 139 AVGAAFMSPNVESLDW 154
A+ + + E+L W
Sbjct: 399 ALDLSLVDTTQEALLW 414
>sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus laevis GN=tmem214-b PE=2
SV=1
Length = 679
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 34 CLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEK 93
CL + + + W +LY +L S +L+ L E W +S + R T+ SF+ N +
Sbjct: 383 CLNKDSLSFSVWRQLYTKHLSQSSLLLQHLVETWDSNSRAMR--KSVRETVHSFKVTNGE 440
Query: 94 --GIGGTA------DAARQSLLR 108
G G ++ DAA Q+LL
Sbjct: 441 FSGKGSSSKDLEACDAACQALLH 463
>sp|Q11YU5|SECA_CYTH3 Protein translocase subunit SecA OS=Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469) GN=secA PE=3 SV=1
Length = 1118
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 19 STPDLS-NEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPL 77
+ PDLS +E +F + K +K+ E L + V+K + WKE+
Sbjct: 73 ANPDLSIDEKEVVFQAIDKLELERNKELEKVLEKVLPQAFAVVKDTARRWKENGKLTVTA 132
Query: 78 DPFRATLKSFRQKNEKGIGGTADAARQSL 106
P L S R+KN + IG TA+ + + L
Sbjct: 133 TPMDIELAS-RKKNVQIIGSTAEWSSKWL 160
>sp|A0JMW6|T214A_XENLA Transmembrane protein 214-A OS=Xenopus laevis GN=tmem214-a PE=2
SV=1
Length = 681
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 34 CLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEK 93
CL + + W +LY +L S +L+ L E W +S + R T+ SF+ N +
Sbjct: 385 CLNKDPLSFSVWRQLYTKHLSQSSFLLQHLVETWDSNSKAMR--KSVRETVHSFKVTNGE 442
Query: 94 --GIGGT------ADAARQSLLR 108
G G + DAA Q+LL
Sbjct: 443 FSGKGSSLKDLEACDAACQALLH 465
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate
Shepherd) PE=3 SV=1
Length = 2179
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 59 VLKKLSEEWKEHSAKL-SPLDPFRATLKSFRQKNEKGIGGTADAARQSLLRNADKYCKLV 117
++K L + W + KL P +P R+T S ++++K + + D + LRN + ++
Sbjct: 265 LIKILPDSWVTNYEKLREPEEPLRSTEVSMSKRHDKSVAISFDHSHYKKLRNTHHFMGMI 324
Query: 118 S 118
S
Sbjct: 325 S 325
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn)
PE=3 SV=1
Length = 2180
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 59 VLKKLSEEWKEHSAKL-SPLDPFRATLKSFRQKNEKGIGGTADAARQSLLRNADKYCKLV 117
++K L + W + KL P +P R+T S ++++K + + D + LRN + ++
Sbjct: 266 LIKILPDSWVTNYEKLKEPEEPLRSTEVSMSKRHDKSVAISFDHSHYKKLRNTHHFMGMI 325
Query: 118 SGKL 121
S +
Sbjct: 326 SDDV 329
>sp|Q8EKQ0|AROE_SHEON Shikimate dehydrogenase OS=Shewanella oneidensis (strain MR-1)
GN=aroE PE=3 SV=1
Length = 287
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 63 LSEEWKEHSAKLSPLDPFRATLKSFRQKNEKG 94
L++E + A L+P+D F A+LKSF KG
Sbjct: 33 LTQESLTYEAILAPIDGFEASLKSFFSSGGKG 64
>sp|Q6YR88|SYD_ONYPE Aspartate--tRNA ligase OS=Onion yellows phytoplasma (strain OY-M)
GN=aspS PE=3 SV=1
Length = 586
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 80 FRATLKSFRQKNEKGIGGTADAARQSLLRNADKYCKLVSGKLSSSHGCLKSVALAVIAIA 139
F L SF +KN+K IGG + + ++ C +VSG H K++ + +A
Sbjct: 343 FNLKLFSFVKKNDKIIGGISQFIKDDSFLKNEEICFVVSGTKDIMH---KALGIFRTKLA 399
Query: 140 VGAAFMSPNVESLDW 154
+ + + E+L W
Sbjct: 400 LDLSLVDTTQEALLW 414
>sp|Q57984|SYA_METJA Alanine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=alaS PE=1 SV=1
Length = 892
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 58 KVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNE 92
KV+K+ EEWKE K+ L+ LK F N+
Sbjct: 763 KVIKRFFEEWKEQRKKIEELEKKIGELKKFELINK 797
>sp|Q9JHJ0|TMOD3_MOUSE Tropomodulin-3 OS=Mus musculus GN=Tmod3 PE=1 SV=1
Length = 352
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 58 KVLKKLSE-EWKEHSAKLSPLDPFRATLKS-FRQKNEKGIGGTADAARQSLL 107
++L KLSE E K+ L LDP A L + FRQKN+ T R+ LL
Sbjct: 19 ELLGKLSESELKQLETVLDDLDPENALLPAGFRQKNQTSKSATGPFDRERLL 70
>sp|O94039|TKT1_CANAX Transketolase 1 OS=Candida albicans GN=TKT1 PE=3 SV=1
Length = 677
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 62 KLSEEWKEHSAKLSPLDPFRATLK-------SFRQKNEKGIGGTADAARQSLLR 108
KL E WKE+ K +P D AT K + K + IGG+AD +L R
Sbjct: 334 KLPEGWKEYLPKYTPADKPLATRKLSENVINALHGKIPEFIGGSADLTGSNLTR 387
>sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus GN=Tmem214 PE=2 SV=1
Length = 687
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 6 LQILSFAIK-----------FAGESTPD----LSNEAAGIFIWCLTQSADCYKHWDKLYE 50
L++L+F K F +TP + E CLT W +LY
Sbjct: 349 LKVLAFGAKPESSLHTYFPSFLSRATPSCPAAMKKELLASLTQCLTVDPLSTSVWRQLYP 408
Query: 51 ANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNE----KGIGG-----TADA 101
+L S +L+ L + W EH K + + T++S + N+ KG GG T D
Sbjct: 409 KHLSQSSLLLEHLLKSW-EHIPKKA-RKSLQETIQSLKVTNQELLKKGSGGSEHVLTCDT 466
Query: 102 ARQSLLRNA 110
A + LL+ A
Sbjct: 467 ACKGLLQRA 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,191,297
Number of Sequences: 539616
Number of extensions: 1817741
Number of successful extensions: 5638
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5632
Number of HSP's gapped (non-prelim): 25
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)