Query 031027
Match_columns 167
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 08:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4467 Uncharacterized conser 100.0 4E-47 8.6E-52 342.1 13.5 162 1-165 378-555 (557)
2 PF10151 DUF2359: Uncharacteri 100.0 2.4E-40 5.2E-45 300.8 14.3 133 6-142 147-280 (469)
3 KOG4467 Uncharacterized conser 98.7 1.5E-08 3.4E-13 93.0 3.9 109 19-130 180-297 (557)
4 PF09602 PhaP_Bmeg: Polyhydrox 66.6 26 0.00057 29.3 6.7 77 1-89 28-132 (165)
5 PF02561 FliS: Flagellar prote 57.2 42 0.00092 25.1 5.9 51 20-73 71-121 (122)
6 KOG2956 CLIP-associating prote 44.9 50 0.0011 32.0 5.5 64 6-74 286-349 (516)
7 KOG0289 mRNA splicing factor [ 44.5 23 0.00051 34.0 3.3 46 48-96 59-106 (506)
8 PF00784 MyTH4: MyTH4 domain; 41.5 71 0.0015 23.6 4.9 66 3-92 4-72 (114)
9 PF07539 DRIM: Down-regulated 41.3 1.8E+02 0.0038 23.0 8.9 96 5-131 15-111 (141)
10 PRK05685 fliS flagellar protei 39.9 1.7E+02 0.0038 22.5 7.6 63 12-74 42-128 (132)
11 PF03993 DUF349: Domain of Unk 36.2 93 0.002 20.8 4.5 47 13-72 25-71 (77)
12 PF10835 DUF2573: Protein of u 29.6 78 0.0017 23.9 3.4 46 15-63 19-69 (82)
13 PF01895 PhoU: PhoU domain; I 29.5 68 0.0015 21.0 2.8 29 1-29 4-32 (88)
14 PF08606 Prp19: Prp19/Pso4-lik 28.3 98 0.0021 22.6 3.6 47 58-119 8-54 (70)
15 PF07851 TMPIT: TMPIT-like pro 26.7 58 0.0013 29.7 2.7 11 40-50 1-11 (330)
16 COG4879 Uncharacterized protei 26.2 1.2E+02 0.0026 26.7 4.4 27 46-72 5-31 (243)
17 PRK00907 hypothetical protein; 24.3 15 0.00033 27.5 -1.2 22 11-32 18-39 (92)
18 PF08618 Opi1: Transcription f 23.0 1.9E+02 0.0042 27.4 5.4 41 21-69 223-263 (427)
19 PF11657 Activator-TraM: Trans 22.0 2.3E+02 0.005 23.0 5.1 62 4-74 8-69 (144)
20 PF13428 TPR_14: Tetratricopep 21.6 1.1E+02 0.0024 18.5 2.6 25 24-48 17-41 (44)
No 1
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-47 Score=342.12 Aligned_cols=162 Identities=49% Similarity=0.754 Sum_probs=151.9
Q ss_pred ChHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCCCCch-
Q 031027 1 MKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDP- 79 (167)
Q Consensus 1 mKqv~qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kls~~~~- 79 (167)
||||+||||+|++|.+||+||.|+||+++|+||..|||.||+++|+|+|++||++||++|++|++||||+|.||.|.++
T Consensus 378 mkqVtqqiftfAlk~age~np~Lakeaaai~iW~~tqn~Dcckhw~nly~~nL~aSVavLkkll~ewkE~svkL~p~~~l 457 (557)
T KOG4467|consen 378 MKQVTQQIFTFALKHAGETNPFLAKEAAAILIWFGTQNVDCCKHWSNLYQINLPASVAVLKKLLGEWKELSVKLLPAETL 457 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccCccHHHHHHHHHHhhchhHHHHHHHHHHHHHhcccccCchhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -HHHHHHHHHhhchhcccCCcchhhhhhHHHHHHHhHHHhhhhcCCCcchhHHHHHHHHHHH----hhhhcCCC------
Q 031027 80 -FRATLKSFRQKNEKGIGGTADAARQSLLRNADKYCKLVSGKLSSSHGCLKSVALAVIAIAV----GAAFMSPN------ 148 (167)
Q Consensus 80 -L~eTvkSFr~kNe~al~~g~d~~~~~~~k~aDk~CK~ilgrls~g~~clk~~~~~~~~~a~----~a~~ls~n------ 148 (167)
|+.||+|||++|||++++| +.++++||+|||+||+|.||+|+| ||+|+++++++-+|+ +|+|+|.|
T Consensus 458 tlN~tmkslr~kneEalteg--g~~~slyk~adk~Ck~i~G~ls~g-gCmKt~astav~laa~g~a~aavls~npea~a~ 534 (557)
T KOG4467|consen 458 TLNVTMKSLRHKNEEALTEG--GVSQSLYKHADKACKVIAGELSWG-GCMKTQASTAVHLAALGLADAAVLSLNPEALAL 534 (557)
T ss_pred HHhhhHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHhhcCccccc-chHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHH
Confidence 6999999999999999999 899999999999999999999999 999998887765543 55788888
Q ss_pred ----CCccchHHHHHHhhcCC
Q 031027 149 ----VESLDWEKISVFFTSQP 165 (167)
Q Consensus 149 ----~e~~~~~kl~~~~~~~~ 165 (167)
+|++|.+|+++.++..+
T Consensus 535 lknlv~sl~ink~te~v~tal 555 (557)
T KOG4467|consen 535 LKNLVESLDINKFTETVMTAL 555 (557)
T ss_pred HHHHHHhhhhhHHHHHHHHHh
Confidence 67889999999988765
No 2
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=100.00 E-value=2.4e-40 Score=300.82 Aligned_cols=133 Identities=40% Similarity=0.681 Sum_probs=116.4
Q ss_pred HHHHHHHHH-HhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCCCCchHHHHH
Q 031027 6 LQILSFAIK-FAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATL 84 (167)
Q Consensus 6 qQi~~~slk-~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kls~~~~L~eTv 84 (167)
+++|+.-++ +.++.|++|++|+++++|||||+|||||+|||++|++|++||++||+||+++|+++|+|++ ++|+|||
T Consensus 147 ~~~f~~~l~~~~~~~~~~~~~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~KL~--k~l~~Tl 224 (469)
T PF10151_consen 147 HTYFPSFLSKATPECPPELKKELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKKLS--KSLKETL 224 (469)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHHHH--HHHHHHH
Confidence 455555444 4456777999999999999999999999999999999999999999999999999999997 5999999
Q ss_pred HHHHhhchhcccCCcchhhhhhHHHHHHHhHHHhhhhcCCCcchhHHHHHHHHHHHhh
Q 031027 85 KSFRQKNEKGIGGTADAARQSLLRNADKYCKLVSGKLSSSHGCLKSVALAVIAIAVGA 142 (167)
Q Consensus 85 kSFr~kNe~al~~g~d~~~~~~~k~aDk~CK~ilgrls~g~~clk~~~~~~~~~a~~a 142 (167)
+|||++|||++++| +++.+++++||++||+|++||++++.+|+..+++++++++|+
T Consensus 225 ~sfr~~Nee~~~k~--~~~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~ 280 (469)
T PF10151_consen 225 KSFRLKNEELLKKG--KAKDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGF 280 (469)
T ss_pred HHHHHhHHHHHhcc--ccchHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence 99999999999998 789999999999999999999888766765555555556554
No 3
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.5e-08 Score=92.98 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=98.2
Q ss_pred CChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHhhchh
Q 031027 19 STPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEAS-----VKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEK 93 (167)
Q Consensus 19 ~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aS-----v~lLk~L~~~Wke~s~Kls~~~~L~eTvkSFr~kNe~ 93 (167)
.-+|+.+|....++.|++.|+.+-+.|++.|++|+.|| |+++.+|...|++.|.++. .+|.++.+|.|.+|++
T Consensus 180 rPiEalgafvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvlr~kPdalt--n~LptlrenpKyqgQd 257 (557)
T KOG4467|consen 180 RPIEALGAFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVLRQKPDALT--NSLPTLRENPKYQGQD 257 (557)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHHHhccHHHH--HhhHHHHhCccccCcc
Confidence 45789999999999999999999999999999999998 4999999999999999997 7899999999999999
Q ss_pred cc----cCCcchhhhhhHHHHHHHhHHHhhhhcCCCcchhH
Q 031027 94 GI----GGTADAARQSLLRNADKYCKLVSGKLSSSHGCLKS 130 (167)
Q Consensus 94 al----~~g~d~~~~~~~k~aDk~CK~ilgrls~g~~clk~ 130 (167)
.+ ..+. .++|-+|..||-+|+..|...-+.+.|.--
T Consensus 258 kLpvtvwmma-qasQgDi~vglyswahnLlpVvg~k~cnPq 297 (557)
T KOG4467|consen 258 KLPVTVWMMA-QASQGDIVVGLYSWAHNLLPVVGPKSCNPQ 297 (557)
T ss_pred cchHHHHHhh-ccccCCeeeeehhhhcccccccCCCCCCch
Confidence 88 4441 455669999999999999999999988654
No 4
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=66.58 E-value=26 Score=29.26 Aligned_cols=77 Identities=29% Similarity=0.429 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHH----hccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHH---hH-HHHH-H---HHHHHHHHHH
Q 031027 1 MKQVSLQILSFAIKF----AGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEA---NL-EASV-K---VLKKLSEEWK 68 (167)
Q Consensus 1 mKqv~qQi~~~slk~----age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~e---nL-~aSv-~---lLk~L~~~Wk 68 (167)
+|||-++-+.. +|- .-..+.+|.++.-.+ +..+..+|.+ .| ++++ . =++.+-++|+
T Consensus 28 ~kqve~~~l~~-lkqqqd~itk~veeLe~~~~q~-----------~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~ 95 (165)
T PF09602_consen 28 MKQVEQQTLKK-LKQQQDWITKQVEELEKELKQF-----------KREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLN 95 (165)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666655554 443 223455566655544 6677777766 44 1222 2 2456678889
Q ss_pred hhcccC-----CCCch-----------HHHHHHHHHh
Q 031027 69 EHSAKL-----SPLDP-----------FRATLKSFRQ 89 (167)
Q Consensus 69 e~s~Kl-----s~~~~-----------L~eTvkSFr~ 89 (167)
|++.|+ +|.++ ++||+++|--
T Consensus 96 El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ie 132 (165)
T PF09602_consen 96 ELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIE 132 (165)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 998876 45444 5677777743
No 5
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=57.22 E-value=42 Score=25.14 Aligned_cols=51 Identities=14% Similarity=0.359 Sum_probs=30.5
Q ss_pred ChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q 031027 20 TPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAK 73 (167)
Q Consensus 20 np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~K 73 (167)
+.++++.+.++-.+|..+=....-. --++.+..-..+|..|.+.|+++.++
T Consensus 71 g~eia~~L~~lY~y~~~~L~~A~~~---~d~~~l~~v~~~l~~l~~aW~e~~k~ 121 (122)
T PF02561_consen 71 GGEIADNLFRLYDYMIRQLVQANLK---KDPERLDEVIRILEELRDAWEEIAKK 121 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555555555555553321111110 11477788889999999999998764
No 6
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=44.94 E-value=50 Score=32.01 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC
Q 031027 6 LQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKL 74 (167)
Q Consensus 6 qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kl 74 (167)
++|.......-|-.+.+=.+||..-..--++.+ +|.+|+|-|.+=| -.|++-|.+.=.++-+|+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfsvWeq~f~~iL---~~l~EvL~d~~~~~~k~l 349 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEG--SFSVWEQHFAEIL---LLLLEVLSDSEDEIIKKL 349 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHcc--chhHHHHHHHHHH---HHHHHHHccchhhHHHHH
Confidence 444555555557778888999999888888864 7999999999988 455555555444444444
No 7
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.50 E-value=23 Score=34.02 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHhHHHHH--HHHHHHHHHHHhhcccCCCCchHHHHHHHHHhhchhccc
Q 031027 48 LYEANLEASV--KVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIG 96 (167)
Q Consensus 48 LY~enL~aSv--~lLk~L~~~Wke~s~Kls~~~~L~eTvkSFr~kNe~al~ 96 (167)
.-+++..+++ ++|+-|.+||+.+-.- + =.||++++.-|++=-.+|-
T Consensus 59 v~pk~~satSIPalL~~lQdEWDavML~--~-F~LRqqL~ttrQELShaLY 106 (506)
T KOG0289|consen 59 VRPKPPSATSIPALLKTLQDEWDAVMLE--S-FTLRQQLQTTRQELSHALY 106 (506)
T ss_pred ccCCCCCccchHHHHHHHHHHHHHHHHH--h-hHHHHHHHHHHHHHHHHHH
Confidence 3445555543 6999999999997222 2 3589999999887555553
No 8
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=41.55 E-value=71 Score=23.59 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhccCChhhhHHHHHHHHHHhccCcc---HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCCCCch
Q 031027 3 QVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSAD---CYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDP 79 (167)
Q Consensus 3 qv~qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~---c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kls~~~~ 79 (167)
+++|.|+..++ .+|+|+-|+---.+==+|.||+ +.+.|+-|+. ...=..|++.
T Consensus 4 ~l~~~Il~~~l-----~~~~LrDEiy~QliKQtt~np~~~s~~r~W~Ll~~-------------------~~~~f~PS~~ 59 (114)
T PF00784_consen 4 DLIQNILQKGL-----ENPELRDEIYCQLIKQTTNNPSPDSCIRGWQLLAL-------------------CCSCFPPSKD 59 (114)
T ss_dssp HHHHHHHHHHH-----H-CCHHHHHHHHHHHHTSS-SSCHHHHHHHHHHHH-------------------HCCC----CC
T ss_pred HHHHHHHHHHH-----cchhhHHHHHHHHHHHHHCCCchhhHHHHHHHHHH-------------------HHhhcCCcHH
Confidence 46777777665 5789999999999999999996 4566665542 1122357778
Q ss_pred HHHHHHHHHhhch
Q 031027 80 FRATLKSFRQKNE 92 (167)
Q Consensus 80 L~eTvkSFr~kNe 92 (167)
|..-+.+|=.++-
T Consensus 60 l~~yL~~fl~~~~ 72 (114)
T PF00784_consen 60 LLPYLRNFLNRHA 72 (114)
T ss_dssp CHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcC
Confidence 8888888877664
No 9
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=41.34 E-value=1.8e+02 Score=23.01 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhhcccCCCCchHHHH
Q 031027 5 SLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKH-WDKLYEANLEASVKVLKKLSEEWKEHSAKLSPLDPFRAT 83 (167)
Q Consensus 5 ~qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~-W~~LY~enL~aSv~lLk~L~~~Wke~s~Kls~~~~L~eT 83 (167)
++++..+=+.+.+.+|+++-+-|+++.. .||. +=.=|.+|| +.|.+ . ++++++
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll--------~~k~~~l~pY~d~L-------~~Lld----------d-~~frde 68 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLL--------TWKDPYLTPYKDNL-------ENLLD----------D-KTFRDE 68 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH--------HhCcHHHHhHHHHH-------HHHcC----------c-chHHHH
Confidence 3566666678889999999998887542 1221 223578887 23322 1 568999
Q ss_pred HHHHHhhchhcccCCcchhhhhhHHHHHHHhHHHhhhhcCCCcchhHH
Q 031027 84 LKSFRQKNEKGIGGTADAARQSLLRNADKYCKLVSGKLSSSHGCLKSV 131 (167)
Q Consensus 84 vkSFr~kNe~al~~g~d~~~~~~~k~aDk~CK~ilgrls~g~~clk~~ 131 (167)
+..|.+..+.-.=+. ..+...+ .--...+.|||.+..+.-++.
T Consensus 69 L~~f~~~~~~~~I~~--ehR~~l~---pvvlRILygk~~~~~~~~~~~ 111 (141)
T PF07539_consen 69 LTTFNLSDESSVIEE--EHRPELM---PVVLRILYGKMQSRKGSGSKK 111 (141)
T ss_pred HHhhcccCCcCCCCH--HHHhHHH---HHHHHHHHHHHhhcCCCCCcc
Confidence 999999887433222 2232222 235788999999988887654
No 10
>PRK05685 fliS flagellar protein FliS; Validated
Probab=39.90 E-value=1.7e+02 Score=22.51 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=42.1
Q ss_pred HHHHhccCChhhhHHHH-------HHHHHHhccC--ccHHHHHHHHHH---------------HhHHHHHHHHHHHHHHH
Q 031027 12 AIKFAGESTPDLSNEAA-------GIFIWCLTQS--ADCYKHWDKLYE---------------ANLEASVKVLKKLSEEW 67 (167)
Q Consensus 12 slk~age~np~L~kEa~-------~i~iwCLtqn--~~c~k~W~~LY~---------------enL~aSv~lLk~L~~~W 67 (167)
+..+..++|-+.+.+.+ .-+.=+|..+ ++-..+-..||. +.+..-..+|+.|.+.|
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~~~l~ev~~il~~LreaW 121 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRNDVQAIDEVEGLLREIKEAW 121 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33445566666554433 3334455543 366777777773 78888899999999999
Q ss_pred HhhcccC
Q 031027 68 KEHSAKL 74 (167)
Q Consensus 68 ke~s~Kl 74 (167)
++++.+.
T Consensus 122 ~~i~~~~ 128 (132)
T PRK05685 122 KQIPPEE 128 (132)
T ss_pred HHHHHhh
Confidence 9998764
No 11
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=36.21 E-value=93 Score=20.83 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=34.1
Q ss_pred HHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 031027 13 IKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSA 72 (167)
Q Consensus 13 lk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~ 72 (167)
+....+.|-+.++++++-+ .-|..+++ | ....--++.|.++|+++.+
T Consensus 25 ~~~~~~~n~~~K~~Li~~~-~~l~~~~d----~--------~~~~~~~k~l~~~Wk~iG~ 71 (77)
T PF03993_consen 25 QDAEREENLEKKEALIEEA-EALAESED----W--------KEAAEEIKELQQEWKEIGP 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhccccc----H--------HHHHHHHHHHHHHHHHcCC
Confidence 3444567888888887776 66777777 4 4446678999999999863
No 12
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=29.61 E-value=78 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=29.1
Q ss_pred HhccCChhhhHHHHHHHHHHhcc-----CccHHHHHHHHHHHhHHHHHHHHHHH
Q 031027 15 FAGESTPDLSNEAAGIFIWCLTQ-----SADCYKHWDKLYEANLEASVKVLKKL 63 (167)
Q Consensus 15 ~age~np~L~kEa~~i~iwCLtq-----n~~c~k~W~~LY~enL~aSv~lLk~L 63 (167)
+.||+||+|+.+. =.|||-. =|--.++|-..||+--++-..+..++
T Consensus 19 L~Ge~~~e~~EkV---k~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 19 LLGETSPEMKEKV---KQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEI 69 (82)
T ss_pred HhcCCCHHHHHHH---HHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHH
Confidence 5699999998764 4677632 24445677777776655544444443
No 13
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=29.47 E-value=68 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHhccCChhhhHHHHH
Q 031027 1 MKQVSLQILSFAIKFAGESTPDLSNEAAG 29 (167)
Q Consensus 1 mKqv~qQi~~~slk~age~np~L~kEa~~ 29 (167)
|.+.+++.|.-++++..++|+++.+++..
T Consensus 4 m~~~~~~~l~~~~~~~~~~d~~~a~~i~~ 32 (88)
T PF01895_consen 4 MGELVEEMLDDAIEAFEERDSELAQEIIQ 32 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46778889999999998889888877654
No 14
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=28.31 E-value=98 Score=22.62 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcccCCCCchHHHHHHHHHhhchhcccCCcchhhhhhHHHHHHHhHHHhh
Q 031027 58 KVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAARQSLLRNADKYCKLVSG 119 (167)
Q Consensus 58 ~lLk~L~~~Wke~s~Kls~~~~L~eTvkSFr~kNe~al~~g~d~~~~~~~k~aDk~CK~ilg 119 (167)
.+|+.|-.||+.+-.-. =.|++.+...|.. =.+++| .-|.+|.+|..
T Consensus 8 ~lL~~lQnEWDa~mLE~---f~LRk~l~~~rqE-----------Ls~aLY-q~DAA~RViAr 54 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLEN---FTLRKQLDQTRQE-----------LSHALY-QHDAACRVIAR 54 (70)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------HHHHHH-HHhHHHHHHHH
Confidence 57999999999873221 1255555555432 334444 46888888864
No 15
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.75 E-value=58 Score=29.73 Aligned_cols=11 Identities=27% Similarity=1.051 Sum_probs=6.3
Q ss_pred cHHHHHHHHHH
Q 031027 40 DCYKHWDKLYE 50 (167)
Q Consensus 40 ~c~k~W~~LY~ 50 (167)
||-+.|+.|-.
T Consensus 1 e~~eEW~eL~~ 11 (330)
T PF07851_consen 1 ECEEEWEELQK 11 (330)
T ss_pred ChHHHHHHHHH
Confidence 45566666544
No 16
>COG4879 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.21 E-value=1.2e+02 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 031027 46 DKLYEANLEASVKVLKKLSEEWKEHSA 72 (167)
Q Consensus 46 ~~LY~enL~aSv~lLk~L~~~Wke~s~ 72 (167)
|++|.+.+++-..|++.++++|..+|.
T Consensus 5 r~~~r~RI~~l~d~wer~l~~we~lsR 31 (243)
T COG4879 5 RQLHRDRIEALLDLWERVLNGWETLSR 31 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 689999999999999999999998643
No 17
>PRK00907 hypothetical protein; Provisional
Probab=24.31 E-value=15 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.0
Q ss_pred HHHHHhccCChhhhHHHHHHHH
Q 031027 11 FAIKFAGESTPDLSNEAAGIFI 32 (167)
Q Consensus 11 ~slk~age~np~L~kEa~~i~i 32 (167)
|-+|++|.+.+++..+..+++-
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~ 39 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLA 39 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHH
Confidence 7899999999999999998876
No 18
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=22.96 E-value=1.9e+02 Score=27.37 Aligned_cols=41 Identities=27% Similarity=0.644 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 031027 21 PDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKE 69 (167)
Q Consensus 21 p~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke 69 (167)
..|+.|-.-.+..|| +|=++=..||..-+..|+..+++|+.
T Consensus 223 vamS~ES~k~LkyCL--------~~Lr~AN~~i~~~i~~Lq~~l~e~e~ 263 (427)
T PF08618_consen 223 VAMSEESKKSLKYCL--------HWLRLANAHIDSKINFLQDVLEEYER 263 (427)
T ss_pred eecCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999 69999999999999999999999994
No 19
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=22.02 E-value=2.3e+02 Score=23.00 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC
Q 031027 4 VSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKL 74 (167)
Q Consensus 4 v~qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kl 74 (167)
+.+.|..=.=-+.|++.|-|- -.|.|--+...=.+...+.|.+...=|+-+...|.+-+++.
T Consensus 8 iI~~IA~khgI~L~~DDPILi---------l~TiNe~ll~~~~~aq~~~l~~fk~elE~~~~~w~~dak~k 69 (144)
T PF11657_consen 8 IIAEIARKHGIALSRDDPILI---------LQTINERLLEDSAKAQQEQLDQFKEELEEIASRWGEDAKEK 69 (144)
T ss_pred HHHHHHHHcCCccCCCCchHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333346688888764 24666677777788888899999999999999999887764
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.64 E-value=1.1e+02 Score=18.47 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhccCccHHHHHHHH
Q 031027 24 SNEAAGIFIWCLTQSADCYKHWDKL 48 (167)
Q Consensus 24 ~kEa~~i~iwCLtqn~~c~k~W~~L 48 (167)
-.+|...+-.+|..+|+....|..|
T Consensus 17 ~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 17 PDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4688888999999999999999875
Done!