Query 031027
Match_columns 167
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 12:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ffb_C Protein STU2; tubulin f 45.8 30 0.001 26.9 4.9 70 3-74 179-248 (278)
2 1orj_A Flagellar protein FLIS; 36.9 1.2E+02 0.0042 22.6 6.9 64 10-73 34-123 (130)
3 3dss_A Geranylgeranyl transfer 21.4 1E+02 0.0035 25.9 4.4 24 22-45 44-67 (331)
4 3iqc_A FLIS, flagellar protein 18.9 97 0.0033 23.0 3.4 64 10-73 41-128 (131)
5 2vh3_A Ranasmurfin, RSF-1; LTQ 18.7 1.8E+02 0.0061 21.5 4.7 42 8-49 55-104 (113)
6 1vh6_A Flagellar protein FLIS; 16.5 1.1E+02 0.0038 23.1 3.3 64 11-74 39-124 (145)
7 3bee_A Putative YFRE protein; 15.8 2.1E+02 0.0073 18.9 4.3 41 8-48 9-49 (93)
8 2a3d_A Protein (de novo three- 15.3 69 0.0024 22.3 1.6 15 17-31 47-64 (73)
9 2k19_A Putative piscicolin 126 15.1 1.7E+02 0.0057 21.5 3.8 35 51-89 12-46 (98)
10 3dra_A Protein farnesyltransfe 15.0 1.2E+02 0.004 24.9 3.3 25 22-46 47-71 (306)
No 1
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=45.85 E-value=30 Score=26.93 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC
Q 031027 3 QVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEASVKVLKKLSEEWKEHSAKL 74 (167)
Q Consensus 3 qv~qQi~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~enL~aSv~lLk~L~~~Wke~s~Kl 74 (167)
.....|+++..|+.+..|++.+.+|..+++..-..--+....=...|.++|+. ..++.|.++++.++.+-
T Consensus 179 ~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp--~~~k~le~~f~k~~~~~ 248 (278)
T 4ffb_C 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKP--IQVKDLHKLFAKVGDEP 248 (278)
T ss_dssp HHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCH--HHHHHHHHHHSCCCC--
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCH--HHHHHHHHHHHhcCCCC
Confidence 34556788888999999999999999988765432221110001334566654 57889999998876653
No 2
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=36.91 E-value=1.2e+02 Score=22.55 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=43.8
Q ss_pred HHHHHHhccCCh-hhhHHH-------HHHHHH---HhccC--ccHHHHHHHHH-------------HHhHHHHHHHHHHH
Q 031027 10 SFAIKFAGESTP-DLSNEA-------AGIFIW---CLTQS--ADCYKHWDKLY-------------EANLEASVKVLKKL 63 (167)
Q Consensus 10 ~~slk~age~np-~L~kEa-------~~i~iw---CLtqn--~~c~k~W~~LY-------------~enL~aSv~lLk~L 63 (167)
..+..++.++|- +-++++ .+|+.. +|..+ .+-.+.-+.|| ++.|..-..+|+.|
T Consensus 34 ~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~l 113 (130)
T 1orj_A 34 ERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTLVKVDKTKEELQKILEILKDL 113 (130)
T ss_dssp HHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 344455566777 777333 444433 44444 35677788888 47888889999999
Q ss_pred HHHHHhhccc
Q 031027 64 SEEWKEHSAK 73 (167)
Q Consensus 64 ~~~Wke~s~K 73 (167)
.+.|+++..+
T Consensus 114 reaW~~i~~~ 123 (130)
T 1orj_A 114 REAWEEVKKK 123 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 3
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=21.43 E-value=1e+02 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHhccCccHHHHH
Q 031027 22 DLSNEAAGIFIWCLTQSADCYKHW 45 (167)
Q Consensus 22 ~L~kEa~~i~iwCLtqn~~c~k~W 45 (167)
+++.||+...--.|..||+.|..|
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaW 67 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLW 67 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH
Confidence 678899999999999999999999
No 4
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=18.91 E-value=97 Score=23.00 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=39.1
Q ss_pred HHHHHHhccCChhhhHHHHHHHHHHh-----ccCc----cHHHHHHHHH---------------HHhHHHHHHHHHHHHH
Q 031027 10 SFAIKFAGESTPDLSNEAAGIFIWCL-----TQSA----DCYKHWDKLY---------------EANLEASVKVLKKLSE 65 (167)
Q Consensus 10 ~~slk~age~np~L~kEa~~i~iwCL-----tqn~----~c~k~W~~LY---------------~enL~aSv~lLk~L~~ 65 (167)
..+..++.++|-+-+-+...=++-.+ +.|+ +-.+.-..|| ++.|..-..+|..|.+
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~ll~~lr~ 120 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLE 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Confidence 34445556677666655443332221 2333 3344566666 4567777899999999
Q ss_pred HHHhhccc
Q 031027 66 EWKEHSAK 73 (167)
Q Consensus 66 ~Wke~s~K 73 (167)
.|++++..
T Consensus 121 aW~~i~~~ 128 (131)
T 3iqc_A 121 AWREIHSD 128 (131)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 99998653
No 5
>2vh3_A Ranasmurfin, RSF-1; LTQ, bisltq, unknown function; HET: DAH TY2; 1.16A {Polypedates leucomystax} PDB: 2vh3_B*
Probab=18.66 E-value=1.8e+02 Score=21.55 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHHHHhc--------cCChhhhHHHHHHHHHHhccCccHHHHHHHHH
Q 031027 8 ILSFAIKFAG--------ESTPDLSNEAAGIFIWCLTQSADCYKHWDKLY 49 (167)
Q Consensus 8 i~~~slk~ag--------e~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY 49 (167)
=|.-++|-.| |+||+|-.|.-.-|.-+|..|-.-...---||
T Consensus 55 dfdsavkctgckegvdlhegnpelieegfekflaslkidrkalgslctlf 104 (113)
T 2vh3_A 55 DFDSAVKCTGCKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLF 104 (113)
T ss_dssp HHHHHHHHHTCCSCCCCCTTCGGGHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HhhhhhcccCcccccccccCCHHHHHHHHHHHHHHHHccHHHHHhHHHHH
Confidence 4566777665 79999999999999999988865544433333
No 6
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=16.51 E-value=1.1e+02 Score=23.14 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=36.6
Q ss_pred HHHHHhccCChhhhHHHHHHH-------HHHhccCccHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHH
Q 031027 11 FAIKFAGESTPDLSNEAAGIF-------IWCLTQSADCYKHWDKLY---------------EANLEASVKVLKKLSEEWK 68 (167)
Q Consensus 11 ~slk~age~np~L~kEa~~i~-------iwCLtqn~~c~k~W~~LY---------------~enL~aSv~lLk~L~~~Wk 68 (167)
.+..+..++|-+-+-+.+.=+ .=+|..+.+-.+.-+.|| ++.|..-..+|..|.+.|+
T Consensus 39 ~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~LreaW~ 118 (145)
T 1vh6_A 39 LAAQAIENDDMERKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDAWK 118 (145)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 344444566666555544322 223433333334455555 2566777889999999999
Q ss_pred hhcccC
Q 031027 69 EHSAKL 74 (167)
Q Consensus 69 e~s~Kl 74 (167)
++..+.
T Consensus 119 ~i~~~~ 124 (145)
T 1vh6_A 119 QAIQSE 124 (145)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 998775
No 7
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=15.81 E-value=2.1e+02 Score=18.86 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHH
Q 031027 8 ILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKL 48 (167)
Q Consensus 8 i~~~slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~L 48 (167)
.+.++--+.-.++..+..|+...+-..|..||+|..-+-.|
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~l 49 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLI 49 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 34444445556777889999999999999999998877544
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=15.27 E-value=69 Score=22.25 Aligned_cols=15 Identities=47% Similarity=0.740 Sum_probs=12.0
Q ss_pred ccCChh---hhHHHHHHH
Q 031027 17 GESTPD---LSNEAAGIF 31 (167)
Q Consensus 17 ge~np~---L~kEa~~i~ 31 (167)
|.+||+ |+||+..|-
T Consensus 47 gkgnpevealrkeaaair 64 (73)
T 2a3d_A 47 GKGNPEVEALRKEAAAIR 64 (73)
T ss_dssp SCCSSTTTHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHH
Confidence 889986 689988763
No 9
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=15.11 E-value=1.7e+02 Score=21.55 Aligned_cols=35 Identities=9% Similarity=0.306 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHh
Q 031027 51 ANLEASVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQ 89 (167)
Q Consensus 51 enL~aSv~lLk~L~~~Wke~s~Kls~~~~L~eTvkSFr~ 89 (167)
|.-++.+.++.+|+++-++-+.. .||++++.+|+-
T Consensus 12 ER~~~Ai~iI~~Ll~~l~~~~~~----~~Lk~vL~~Y~~ 46 (98)
T 2k19_A 12 ERSNQAENIITDLLDDLKTDLDN----ESLKKVLENYLE 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSC----SSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcc----chHHHHHHHHHH
Confidence 34467899999999987764433 679999999973
No 10
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=15.02 E-value=1.2e+02 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHhccCccHHHHHH
Q 031027 22 DLSNEAAGIFIWCLTQSADCYKHWD 46 (167)
Q Consensus 22 ~L~kEa~~i~iwCLtqn~~c~k~W~ 46 (167)
+.+.||+...--.|..||+.|..|-
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn 71 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWI 71 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHH
Confidence 3456889999999999999999994
Done!