Query 031027
Match_columns 167
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 12:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031027.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031027hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1orja_ a.24.19.1 (A:) Flagell 50.2 4.6 0.00034 27.9 2.6 25 50-74 99-123 (126)
2 d1dcea1 a.118.6.1 (A:1-241,A:3 32.0 39 0.0028 24.2 5.4 27 19-45 40-66 (334)
3 d1pjva_ g.3.7.2 (A:) Cobatoxin 30.3 11 0.00078 21.4 1.5 11 106-116 4-14 (32)
4 d1swxa_ a.224.1.1 (A:) Glycoli 29.0 29 0.0021 25.6 4.2 49 4-52 136-194 (202)
5 d1vcta1 a.7.12.1 (A:9-107) Hyp 22.4 30 0.0022 22.0 2.8 29 1-29 13-41 (99)
6 d1ihga1 a.118.8.1 (A:197-365) 22.3 68 0.0049 20.9 4.8 42 24-65 93-139 (169)
7 d1elwa_ a.118.8.1 (A:) Hop {Hu 21.3 29 0.0021 21.8 2.6 34 12-48 10-43 (117)
8 d1nnqa1 a.25.1.1 (A:2-134) Rub 15.5 80 0.0058 21.1 3.9 31 3-33 20-50 (133)
9 d1vh6a_ a.24.19.1 (A:) Flagell 12.3 86 0.0063 20.1 3.2 20 51-70 82-101 (102)
10 d1ckta_ a.21.1.1 (A:) High mob 11.8 36 0.0026 20.3 1.0 31 43-73 15-48 (71)
No 1
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=50.23 E-value=4.6 Score=27.92 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcccC
Q 031027 50 EANLEASVKVLKKLSEEWKEHSAKL 74 (167)
Q Consensus 50 ~enL~aSv~lLk~L~~~Wke~s~Kl 74 (167)
.+.+.....+|+.|.+.|++++.|+
T Consensus 99 ~~~i~e~~~il~~l~eaW~~i~~~~ 123 (126)
T d1orja_ 99 KEELQKILEILKDLREAWEEVKKKV 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888999999999999998875
No 2
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.00 E-value=39 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=24.6
Q ss_pred CChhhhHHHHHHHHHHhccCccHHHHH
Q 031027 19 STPDLSNEAAGIFIWCLTQSADCYKHW 45 (167)
Q Consensus 19 ~np~L~kEa~~i~iwCLtqn~~c~k~W 45 (167)
.+.++..||..++--+|..||+.+..|
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~ 66 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLW 66 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHH
Confidence 566678999999999999999999999
No 3
>d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=30.32 E-value=11 Score=21.36 Aligned_cols=11 Identities=45% Similarity=0.760 Sum_probs=9.1
Q ss_pred hHHHHHHHhHH
Q 031027 106 LLRNADKYCKL 116 (167)
Q Consensus 106 ~~k~aDk~CK~ 116 (167)
-|+.|||-||.
T Consensus 4 vyrtcdkdckr 14 (32)
T d1pjva_ 4 VYRTCDKDCKR 14 (32)
T ss_dssp CHHHHHHHHHT
T ss_pred EEeeccchhhh
Confidence 37899999984
No 4
>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.00 E-value=29 Score=25.56 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhc----------cCChhhhHHHHHHHHHHhccCccHHHHHHHHHHHh
Q 031027 4 VSLQILSFAIKFAG----------ESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEAN 52 (167)
Q Consensus 4 v~qQi~~~slk~ag----------e~np~L~kEa~~i~iwCLtqn~~c~k~W~~LY~en 52 (167)
+.|++|.++++++- .++++-..|+..-+.-++..--..+..++.+|.+|
T Consensus 136 ~vr~~~~~A~~~~P~R~~fl~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ly~~~ 194 (202)
T d1swxa_ 136 IVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQM 194 (202)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57888888887654 34444444444444444444444455555555543
No 5
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.39 E-value=30 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHhccCChhhhHHHHH
Q 031027 1 MKQVSLQILSFAIKFAGESTPDLSNEAAG 29 (167)
Q Consensus 1 mKqv~qQi~~~slk~age~np~L~kEa~~ 29 (167)
|...++..|..++.+..+++++++++...
T Consensus 13 M~~~~~~ml~~a~~a~~~~D~~~A~~v~~ 41 (99)
T d1vcta1 13 MKDTVELMVDLAYASLLFGDKEIAEEVLE 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 56778889999999999999999988754
No 6
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.29 E-value=68 Score=20.92 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhccCccHHHHHHHH-----HHHhHHHHHHHHHHHHH
Q 031027 24 SNEAAGIFIWCLTQSADCYKHWDKL-----YEANLEASVKVLKKLSE 65 (167)
Q Consensus 24 ~kEa~~i~iwCLtqn~~c~k~W~~L-----Y~enL~aSv~lLk~L~~ 65 (167)
-.||...+..+|..||++.+.|-++ ...+.+.+..-+++.++
T Consensus 93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4689999999999999999998776 55666666666665554
No 7
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=29 Score=21.79 Aligned_cols=34 Identities=6% Similarity=-0.031 Sum_probs=26.1
Q ss_pred HHHHhccCChhhhHHHHHHHHHHhccCccHHHHHHHH
Q 031027 12 AIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKL 48 (167)
Q Consensus 12 slk~age~np~L~kEa~~i~iwCLtqn~~c~k~W~~L 48 (167)
.-++...|+ -+||...+..+|..||+....|.++
T Consensus 10 g~~~~~~g~---~~eAi~~~~~al~~~p~~~~~~~~~ 43 (117)
T d1elwa_ 10 GNKALSVGN---IDDALQCYSEAIKLDPHNHVLYSNR 43 (117)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHhcCCcchhhhhcc
Confidence 333444444 4589999999999999999988875
No 8
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=15.46 E-value=80 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccCChhhhHHHHHHHHH
Q 031027 3 QVSLQILSFAIKFAGESTPDLSNEAAGIFIW 33 (167)
Q Consensus 3 qv~qQi~~~slk~age~np~L~kEa~~i~iw 33 (167)
++.+|-+.||-.+.++|.|++++....+++.
T Consensus 20 ~A~~~Y~~~A~~a~~~G~~~lA~~f~~~A~e 50 (133)
T d1nnqa1 20 MAHMRYLIFAEKAEQEGFPNIAKLFRAIAYA 50 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 5678999999999999999999998888875
No 9
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=12.26 E-value=86 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHhh
Q 031027 51 ANLEASVKVLKKLSEEWKEH 70 (167)
Q Consensus 51 enL~aSv~lLk~L~~~Wke~ 70 (167)
+.+.....+|+.|.+.|+|.
T Consensus 82 ~~l~~v~~~l~~l~eaW~e~ 101 (102)
T d1vh6a_ 82 GMLAEVEGYVTDFRDAWKQA 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999885
No 10
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.83 E-value=36 Score=20.33 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHHhhccc
Q 031027 43 KHWDKLYEANLEAS---VKVLKKLSEEWKEHSAK 73 (167)
Q Consensus 43 k~W~~LY~enL~aS---v~lLk~L~~~Wke~s~K 73 (167)
.+++++-.+|...+ .-|.+.|.+.|+++|..
T Consensus 15 ~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~~ 48 (71)
T d1ckta_ 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 48 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCCHH
Confidence 34455555554333 47899999999998765
Done!