BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031028
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 36 TEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCY 95
+ED Q +++M R + Q TD EEEC ICM+ + ++LP C H+ C KC
Sbjct: 125 SEDTCQASMWMGRVK--------QLTD-----EEECCICMDGKADLILP-CAHSFCQKCI 170
Query: 96 REWRIRSQSCPFCRDSLKRVNSGDLWVYMDS 126
+W +S++CP CR + N + WV D+
Sbjct: 171 DKWSGQSRNCPVCRIQVTAAN--ESWVMSDA 199
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 41 QKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI 100
Q +++M R ++ DE+ EC ICM+ ++LP C H+ C KC +W
Sbjct: 138 QASLWMGRLKQPTDED-------------ECCICMDGRVDLILP-CAHSFCQKCIDKWSD 183
Query: 101 RSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSAT 134
R +SCP CR + +GD WV D+ D AT
Sbjct: 184 RHRSCPVCRRQV--TGAGDSWVVSDAPTEDDIAT 215
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 58 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 148 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 199
Query: 118 GDLWVYMDS 126
+ WV D+
Sbjct: 200 NESWVVSDA 208
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 32 GVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMC 91
G T D + + R EEQ Q A E C IC E+N + + C H +C
Sbjct: 312 GKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLC 371
Query: 92 LKCYREWRIR-SQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKL 150
C W+ SQ+CPFCR +K + ++ + DS + + R L L ++
Sbjct: 372 SCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQEGRELEL--GQV 429
Query: 151 PL 152
PL
Sbjct: 430 PL 431
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 71 CGICMET-------NSKI--VLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME N + +L NCNH+ C++C R WR Q SCP CR + +
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 371 VIPSEFWV 378
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 53 DDEEQRQYTDADIEREEE---------------CGICMETNSK---------IVLPNCNH 88
D+ ++ Q+T A IE E+ CG+CME + +L NCNH
Sbjct: 193 DNSQRSQHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCNH 252
Query: 89 AMCLKCYREWRIRSQ-------SCPFCRDSLKRVNSGDLWV 122
CLKC R+WR Q SCP CR + V + WV
Sbjct: 253 CYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWV 293
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICMETNSK---------IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 341 VIPSEYWV 348
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICMETNSK---------IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 336
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 337 VIPSEYWV 344
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICMETNSK---------IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 341 VIPSEYWV 348
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 33 VTDTEDKKQKAVYMERYRRRDDEEQ--RQYTDADIEREEECGICMETNSKIVLPNCNHAM 90
V +DK+ + E+ + + +E+ Q T+ +E E +C IC E + V NC H+
Sbjct: 353 VLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESELQCSICSELFIEAVTLNCAHSF 411
Query: 91 CLKCYREWRIRSQSCPFC 108
C C EWR R CP C
Sbjct: 412 CQHCISEWRNRKDKCPMC 429
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 71 CGICMETNSKIVLPN---------CNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME + P+ CNH CL+C R WR +Q SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 407 VIPSEFWV 414
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICMET---------NSKIVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME + +L NCNH CLKC R+WR + SCP CR +
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCRITSNF 375
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 376 VIPSEYWV 383
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 71 CGICME-----TNSK----IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CGICME TN +L NC+H+ CLKC R+WR Q SCP CR +
Sbjct: 247 CGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 306
Query: 115 VNSGDLWV 122
+ + WV
Sbjct: 307 IIPSEYWV 314
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 14 ANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 73
N + + P + L R + + + Q+ + RRR ++ E + C I
Sbjct: 1035 VNQKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQICII 1094
Query: 74 CMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 129
C + + + C H C C W S SCP C+ L + N+ + +SRDI
Sbjct: 1095 CRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNA---YYIGESRDI 1147
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 53 DDEEQRQYTDADIEREEE---------------CGICMETNSK---------IVLPNCNH 88
D+ ++ ++T A IE E+ CG+CME + +L NC+H
Sbjct: 195 DNNQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSH 254
Query: 89 AMCLKCYREWRIRSQ-------SCPFCRDSLKRVNSGDLWV 122
CLKC R+WR Q SCP CR + V + WV
Sbjct: 255 CYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWV 295
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 129
C IC E + + + C H MC C W+ Q CPFCR +K G + +D D
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK----GTEPIVVDPFDP 434
Query: 130 IDSATVTREN 139
S ++ R+
Sbjct: 435 RGSGSLLRQG 444
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 129
C IC E + + + C H MC C W+ Q CPFCR +K G + +D D
Sbjct: 381 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK----GTEPIVVDPFDP 436
Query: 130 IDSATVTREN 139
S ++ R+
Sbjct: 437 RGSGSLLRQG 446
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112
EE + + ++ E +C IC E + V NC H+ C C + WR R + CP CR +
Sbjct: 361 EEVLNHMNDVLDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEI 418
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 32 GVTDTEDKKQKAVYMERYR-RRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAM 90
+ +DK+ + E+ + + EE + + +E E +C IC E + V NC H+
Sbjct: 365 AIIQAKDKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFVEAVTLNCAHSF 424
Query: 91 CLKCYREWRIRSQSCPFCRDSLK 113
C C EW R CP CR +K
Sbjct: 425 CSYCINEWMKRKVECPICRKDIK 447
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICMETNSK---------IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CG+CME + +L NC+H CLKC R+WR Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 286 VIPSEYWV 293
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 67 REEECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112
+ EC IC+ E + VLP CNH +KC W + SCP CR SL
Sbjct: 109 KATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 60 YTDADIEREE--ECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113
Y + I E+ +C +C+ +T+ +LP C+HA L C W + + +CP CR SL
Sbjct: 194 YGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLS 253
Query: 114 RVN 116
N
Sbjct: 254 TSN 256
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 31 RGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAM 90
+ + +T+++K+K V+ ++ EE + + ++ E +C IC E + V NC H+
Sbjct: 349 KELQETKEEKEK-VFAQK------EEVLNHMNDVLDNELQCIICSEHFIEAVTLNCAHSF 401
Query: 91 CLKCYREWRIRSQSCPFCRDSL 112
C C + W+ R + CP CR +
Sbjct: 402 CSYCIKSWKKRKEECPICRQEI 423
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYM 124
I++ EC IC E + +C H C +C W S+SCP CR L S VY
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPSPAYLVY- 137
Query: 125 DSRDIIDSATVTRENLRRLFLYIDKLPL-----IIPDNLFDPYDSH 165
+I++ V N + I++ P ++ D +F DSH
Sbjct: 138 ---EIMN--VVAASNSGFPLVGINENPAKKQKEVLFDGMFKQEDSH 178
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 46 MERYRRRDDEEQRQ------YTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWR 99
+ER + D+ Q Q + + +E E +C IC E + V NC H+ C C EW
Sbjct: 374 LERTKEEKDKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSFCISEWM 433
Query: 100 IRSQSCPFCRDSLK-RVNS 117
R CP CR ++ R NS
Sbjct: 434 KRKVECPICRKDIESRTNS 452
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113
EE + + +E E +C IC E + V NC H+ C C EW R CP CR +K
Sbjct: 388 EEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113
EE + + +E E +C IC E + V NC H+ C C EW R CP CR +K
Sbjct: 387 EEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 71 CGICME-----TNSK----IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 114
CG+CME TN +L NC H CLKC R+WR Q SCP CR +
Sbjct: 236 CGVCMEVVFEKTNPSERRFGILSNCCHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 295
Query: 115 VNSGDLWV 122
V + WV
Sbjct: 296 VIPSEYWV 303
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 67 REEECGICM---ETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112
+ EC IC+ E K+ VLP CNH ++C W + SCP CR SL
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK- 113
EE + + +E E +C IC E + V NC H+ C C EW R CP CR ++
Sbjct: 390 EEVLSHMNDLLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIES 449
Query: 114 RVNS 117
R NS
Sbjct: 450 RTNS 453
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 70 ECGICMETNSKI----VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN-SGDLWVYM 124
EC +C+ + +LP C HA + C +W + +CP CR+ RVN DL V
Sbjct: 123 ECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRN---RVNIEDDLSVLG 179
Query: 125 DSRDI--IDSATVTRENLRRLFLYIDK 149
+S I + + TRE RL +YI++
Sbjct: 180 NSSTSLRILNQSETREEDSRLEIYIER 206
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 70 ECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMD 125
EC +C+ E+ + VLPNC H + C W +CP CR ++
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS------------LVE 165
Query: 126 SRDIIDSATVTRENLRRLFLYIDKLPLII 154
S I+S RE R + + +D P+++
Sbjct: 166 SLAGIESTAAARE--REVVIAVDSDPVLV 192
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFCRD 110
EE R Y D EC IC E +K +CNH L C R W + SCP CR
Sbjct: 328 EELRDYDD-------ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
Query: 111 SL 112
L
Sbjct: 381 PL 382
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 22 IYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICME---TN 78
+Y ++ Q ++ VTD ++ M E Q TD C IC E T
Sbjct: 248 MYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATD------NVCIICREEMVTG 301
Query: 79 SKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 116
+K LP CNH C R W R Q+CP CR + R +
Sbjct: 302 AK-KLP-CNHIFHSSCLRSWFQRQQTCPTCRMDVLRAS 337
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 55 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFCRD 110
EE R Y D EC IC E +K +CNH L C R W + SCP CR
Sbjct: 328 EELRAYDD-------ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
Query: 111 SL 112
L
Sbjct: 381 PL 382
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 70 ECGICMETNSKIVLPNCNHAMCLKCYREW---RIRSQSCPFCRDSLKR 114
EC IC+ET + V+ C H C C +W R Q CP C+ + R
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISR 73
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 46 MERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW---RIRS 102
M + EE ++ D EC IC++ V+ C H C C +W R +
Sbjct: 1 MASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNN 60
Query: 103 QSCPFCRDSL 112
Q CP C+ ++
Sbjct: 61 QVCPVCKSAI 70
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 49 YRRRDDEEQRQYTDADIEREEECGICME----------TNSKIVLPNCNHAMCLKCYREW 98
Y + D + Q D D C ICM+ N + + C H + C + W
Sbjct: 302 YEKLSDVSEEQLDDTD----SMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSW 357
Query: 99 RIRSQSCPFCRDSL 112
RSQ+CP CR S+
Sbjct: 358 MERSQTCPICRLSV 371
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 71 CGICME--TNSKIV--LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113
C IC++ +I LP C+H L C +W IR SCP CR ++K
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAVK 222
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 32 GVTDTEDKKQKAVYMERYRRRDDEEQRQYTDA----------DIERE-EECGICMETNSK 80
G+T++ Q Y R+ D E + + DA + + +C +C+ +
Sbjct: 73 GITESSTALQ-GRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTA 131
Query: 81 I----VLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111
+LP C+HA ++C W + + +CP CRD+
Sbjct: 132 EDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDN 166
>sp|Q6GQL0|CBLBA_XENLA E3 ubiquitin-protein ligase CBL-B-A OS=Xenopus laevis GN=cblb-a
PE=2 SV=1
Length = 918
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 384 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPFCRCEIK 427
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCR-----DSLKRV 115
C IC E V+ +CNH C C RE+ I + CP C+ +LKRV
Sbjct: 36 CYICKEFLKAPVITSCNHTFCSHCIREYLIVNSHCPLCKAEQFESNLKRV 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,520,373
Number of Sequences: 539616
Number of extensions: 2397311
Number of successful extensions: 9866
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 463
Number of HSP's that attempted gapping in prelim test: 9362
Number of HSP's gapped (non-prelim): 885
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)