Query 031028
Match_columns 167
No_of_seqs 197 out of 1831
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02929 N1R/p28-like protein; 99.3 9.5E-13 2.1E-17 104.2 3.6 56 66-121 172-235 (238)
2 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.4E-12 3.1E-17 79.4 2.3 47 68-114 2-49 (50)
3 PF13639 zf-RING_2: Ring finge 99.3 7.5E-13 1.6E-17 78.5 1.0 40 70-109 2-44 (44)
4 PLN03208 E3 ubiquitin-protein 99.3 2.5E-12 5.4E-17 98.3 3.1 53 62-114 12-80 (193)
5 PF15227 zf-C3HC4_4: zinc fing 99.2 7.8E-12 1.7E-16 73.5 2.5 38 71-108 1-42 (42)
6 PF13923 zf-C3HC4_2: Zinc fing 99.2 8E-12 1.7E-16 72.2 2.3 38 71-108 1-39 (39)
7 KOG0317 Predicted E3 ubiquitin 99.2 7.2E-12 1.6E-16 100.2 2.7 48 66-113 237-284 (293)
8 KOG0823 Predicted E3 ubiquitin 99.2 8.3E-12 1.8E-16 97.2 2.4 49 66-114 45-96 (230)
9 PHA02926 zinc finger-like prot 99.2 1.2E-11 2.7E-16 95.8 3.0 58 65-122 167-239 (242)
10 PF12678 zf-rbx1: RING-H2 zinc 99.1 3.4E-11 7.3E-16 79.1 2.7 42 68-109 19-73 (73)
11 KOG0320 Predicted E3 ubiquitin 99.1 4.5E-11 9.7E-16 89.7 2.1 48 66-113 129-178 (187)
12 smart00504 Ubox Modified RING 99.0 2.1E-10 4.5E-15 72.6 3.4 45 69-113 2-46 (63)
13 COG5243 HRD1 HRD ubiquitin lig 99.0 6.4E-10 1.4E-14 91.9 7.0 51 65-115 284-347 (491)
14 KOG1039 Predicted E3 ubiquitin 99.0 4.4E-10 9.6E-15 93.2 5.7 99 58-156 151-264 (344)
15 KOG4628 Predicted E3 ubiquitin 99.0 4.2E-10 9.1E-15 93.1 5.6 48 69-116 230-281 (348)
16 PF00097 zf-C3HC4: Zinc finger 99.0 2.3E-10 5E-15 66.5 2.5 38 71-108 1-41 (41)
17 TIGR00599 rad18 DNA repair pro 99.0 4E-10 8.6E-15 95.2 4.0 51 64-114 22-72 (397)
18 cd00162 RING RING-finger (Real 99.0 4.4E-10 9.5E-15 65.6 2.5 43 70-112 1-45 (45)
19 KOG0287 Postreplication repair 99.0 2.4E-10 5.2E-15 93.4 1.7 56 66-121 21-76 (442)
20 COG5432 RAD18 RING-finger-cont 98.9 8.1E-10 1.8E-14 88.7 2.7 52 65-116 22-73 (391)
21 PF14634 zf-RING_5: zinc-RING 98.9 1.2E-09 2.6E-14 64.7 2.8 41 70-110 1-44 (44)
22 smart00184 RING Ring finger. E 98.9 1.7E-09 3.8E-14 60.9 2.6 38 71-108 1-39 (39)
23 PF12861 zf-Apc11: Anaphase-pr 98.8 2.3E-09 5.1E-14 71.6 2.8 47 67-113 20-82 (85)
24 KOG2164 Predicted E3 ubiquitin 98.8 2.4E-09 5.2E-14 91.6 2.5 47 68-114 186-237 (513)
25 COG5574 PEX10 RING-finger-cont 98.8 3.4E-09 7.5E-14 84.0 2.2 48 66-113 213-262 (271)
26 COG5540 RING-finger-containing 98.7 4.3E-09 9.4E-14 85.0 2.4 47 67-113 322-372 (374)
27 PF13445 zf-RING_UBOX: RING-ty 98.7 8.7E-09 1.9E-13 60.7 1.5 35 71-106 1-43 (43)
28 KOG0802 E3 ubiquitin ligase [P 98.6 1.1E-08 2.3E-13 90.3 1.1 45 67-111 290-339 (543)
29 PF04564 U-box: U-box domain; 98.6 2.6E-08 5.5E-13 65.3 2.4 48 67-114 3-51 (73)
30 KOG4172 Predicted E3 ubiquitin 98.6 1.4E-08 2.9E-13 62.0 0.2 48 67-114 6-55 (62)
31 KOG2177 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 75.6 1.6 46 65-110 10-55 (386)
32 PF14835 zf-RING_6: zf-RING of 98.4 7.3E-08 1.6E-12 60.9 0.3 45 67-113 6-51 (65)
33 KOG4265 Predicted E3 ubiquitin 98.4 1.6E-07 3.4E-12 77.6 2.3 50 66-115 288-338 (349)
34 KOG1734 Predicted RING-contain 98.4 3.5E-07 7.7E-12 73.0 3.8 72 42-113 198-281 (328)
35 COG5219 Uncharacterized conser 98.4 2E-07 4.3E-12 84.9 2.5 86 8-114 1430-1524(1525)
36 TIGR00570 cdk7 CDK-activating 98.3 7E-07 1.5E-11 73.1 5.3 47 68-114 3-55 (309)
37 COG5194 APC11 Component of SCF 98.2 6E-07 1.3E-11 59.0 1.9 33 82-114 50-82 (88)
38 KOG0978 E3 ubiquitin ligase in 98.2 3.8E-07 8.2E-12 81.5 0.6 47 67-113 642-689 (698)
39 KOG0824 Predicted E3 ubiquitin 98.1 1.1E-06 2.4E-11 71.2 1.9 48 67-114 6-54 (324)
40 KOG4159 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 73.7 2.6 51 64-114 80-130 (398)
41 KOG1785 Tyrosine kinase negati 98.0 1.5E-06 3.2E-11 72.9 1.2 50 66-115 367-418 (563)
42 KOG0828 Predicted E3 ubiquitin 98.0 1.7E-06 3.6E-11 74.2 1.4 48 66-113 569-634 (636)
43 KOG1493 Anaphase-promoting com 98.0 9.1E-07 2E-11 57.6 -0.6 47 67-113 19-81 (84)
44 COG5152 Uncharacterized conser 97.9 4.9E-06 1.1E-10 63.9 1.6 46 68-113 196-241 (259)
45 PF11793 FANCL_C: FANCL C-term 97.8 3E-06 6.6E-11 55.0 -0.4 46 68-113 2-66 (70)
46 KOG0297 TNF receptor-associate 97.8 9.1E-06 2E-10 69.1 2.0 49 65-113 18-67 (391)
47 KOG0311 Predicted E3 ubiquitin 97.8 3.2E-06 6.9E-11 69.8 -1.6 50 65-114 40-91 (381)
48 KOG1813 Predicted E3 ubiquitin 97.7 1.5E-05 3.3E-10 64.5 1.3 47 68-114 241-287 (313)
49 smart00744 RINGv The RING-vari 97.7 2.6E-05 5.7E-10 47.1 2.1 40 70-109 1-49 (49)
50 PHA03096 p28-like protein; Pro 97.7 6.5E-05 1.4E-09 61.3 5.0 103 9-124 131-258 (284)
51 KOG2879 Predicted E3 ubiquitin 97.7 3.9E-05 8.4E-10 61.6 3.5 55 61-115 232-289 (298)
52 KOG4692 Predicted E3 ubiquitin 97.6 6.8E-05 1.5E-09 62.2 4.6 51 64-114 418-468 (489)
53 KOG2930 SCF ubiquitin ligase, 97.5 3.2E-05 7E-10 53.3 1.0 31 83-113 78-108 (114)
54 KOG1002 Nucleotide excision re 97.5 5.4E-05 1.2E-09 65.7 2.5 48 66-113 534-586 (791)
55 PF11789 zf-Nse: Zinc-finger o 97.5 5.6E-05 1.2E-09 47.1 2.0 41 67-107 10-53 (57)
56 KOG0804 Cytoplasmic Zn-finger 97.5 5.4E-05 1.2E-09 64.4 2.0 46 66-113 173-222 (493)
57 KOG4275 Predicted E3 ubiquitin 97.4 3.8E-05 8.2E-10 62.2 0.2 43 68-114 300-343 (350)
58 KOG2660 Locus-specific chromos 97.3 3.6E-05 7.8E-10 63.2 -0.8 49 67-115 14-63 (331)
59 KOG0827 Predicted E3 ubiquitin 97.1 0.0002 4.4E-09 60.0 1.8 42 69-110 5-53 (465)
60 KOG4739 Uncharacterized protei 97.1 0.00028 6.1E-09 55.7 2.3 46 70-117 5-52 (233)
61 KOG0825 PHD Zn-finger protein 97.1 9.9E-05 2.1E-09 66.7 -0.6 48 69-116 124-174 (1134)
62 PF14447 Prok-RING_4: Prokaryo 97.0 0.00029 6.3E-09 43.3 1.4 46 67-114 6-51 (55)
63 PF10367 Vps39_2: Vacuolar sor 96.9 0.0017 3.7E-08 44.7 4.5 36 61-96 71-108 (109)
64 KOG1645 RING-finger-containing 96.9 0.00054 1.2E-08 57.9 2.1 45 68-112 4-55 (463)
65 KOG2114 Vacuolar assembly/sort 96.7 0.0014 3.1E-08 59.8 3.6 67 43-112 811-882 (933)
66 KOG4445 Uncharacterized conser 96.6 0.0032 6.9E-08 51.4 4.7 48 67-114 114-187 (368)
67 KOG1571 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 54.2 2.5 46 66-114 303-348 (355)
68 KOG1941 Acetylcholine receptor 96.5 0.00092 2E-08 56.3 0.8 51 63-113 360-416 (518)
69 COG5236 Uncharacterized conser 96.4 0.0023 4.9E-08 53.3 2.6 51 65-115 58-110 (493)
70 KOG1001 Helicase-like transcri 96.3 0.0035 7.6E-08 56.9 3.4 45 69-114 455-501 (674)
71 COG5222 Uncharacterized conser 96.3 0.002 4.4E-08 52.6 1.5 42 69-110 275-318 (427)
72 KOG0826 Predicted E3 ubiquitin 96.2 0.0029 6.4E-08 52.1 2.2 45 67-111 299-344 (357)
73 KOG1428 Inhibitor of type V ad 96.2 0.0036 7.8E-08 60.4 2.8 70 64-142 3482-3564(3738)
74 PF14570 zf-RING_4: RING/Ubox 96.2 0.0047 1E-07 37.0 2.4 42 71-112 1-47 (48)
75 KOG4185 Predicted E3 ubiquitin 96.1 0.0039 8.4E-08 50.9 2.4 44 69-112 4-54 (296)
76 PF04641 Rtf2: Rtf2 RING-finge 96.0 0.015 3.4E-07 46.8 5.4 48 65-113 110-161 (260)
77 PF10272 Tmpp129: Putative tra 95.6 0.014 3E-07 49.2 3.8 67 47-113 250-351 (358)
78 KOG3039 Uncharacterized conser 95.6 0.01 2.2E-07 47.3 2.7 47 67-113 220-270 (303)
79 KOG3002 Zn finger protein [Gen 95.5 0.0071 1.5E-07 49.8 1.8 46 66-114 46-92 (299)
80 KOG3268 Predicted E3 ubiquitin 95.2 0.011 2.4E-07 44.9 1.7 46 69-114 166-229 (234)
81 PF07800 DUF1644: Protein of u 95.1 0.016 3.5E-07 43.2 2.3 32 68-99 2-46 (162)
82 KOG4367 Predicted Zn-finger pr 95.0 0.013 2.8E-07 50.3 1.7 36 66-101 2-37 (699)
83 KOG1814 Predicted E3 ubiquitin 95.0 0.0094 2E-07 50.6 0.9 44 67-110 183-237 (445)
84 KOG3800 Predicted E3 ubiquitin 94.8 0.035 7.6E-07 45.2 3.7 44 70-113 2-51 (300)
85 PHA02862 5L protein; Provision 94.6 0.03 6.4E-07 41.2 2.6 44 69-113 3-53 (156)
86 KOG2932 E3 ubiquitin ligase in 94.5 0.014 3.1E-07 47.9 0.9 45 69-115 91-136 (389)
87 PF08746 zf-RING-like: RING-li 94.3 0.045 9.8E-07 31.9 2.5 38 71-108 1-43 (43)
88 PHA02825 LAP/PHD finger-like p 93.8 0.083 1.8E-06 39.5 3.5 48 66-114 6-60 (162)
89 PF05290 Baculo_IE-1: Baculovi 93.3 0.055 1.2E-06 39.2 1.8 48 67-114 79-133 (140)
90 KOG1100 Predicted E3 ubiquitin 92.8 0.044 9.4E-07 42.9 0.8 39 71-113 161-200 (207)
91 PF03854 zf-P11: P-11 zinc fin 92.1 0.083 1.8E-06 31.5 1.2 34 81-114 13-47 (50)
92 KOG3970 Predicted E3 ubiquitin 92.0 0.15 3.3E-06 40.2 3.0 48 66-113 48-105 (299)
93 KOG2817 Predicted E3 ubiquitin 91.7 0.12 2.6E-06 43.8 2.2 44 67-110 333-382 (394)
94 KOG0298 DEAD box-containing he 91.6 0.032 7E-07 53.3 -1.3 47 66-112 1151-1198(1394)
95 PF05883 Baculo_RING: Baculovi 91.5 0.057 1.2E-06 39.2 0.1 33 68-100 26-67 (134)
96 KOG1952 Transcription factor N 91.0 0.12 2.6E-06 47.7 1.6 47 67-113 190-247 (950)
97 KOG1940 Zn-finger protein [Gen 90.7 0.15 3.1E-06 41.6 1.7 43 68-110 158-204 (276)
98 KOG2034 Vacuolar sorting prote 90.6 0.58 1.2E-05 43.6 5.6 35 65-99 814-850 (911)
99 PF12906 RINGv: RING-variant d 89.6 0.18 3.8E-06 29.9 1.0 38 71-108 1-47 (47)
100 COG5175 MOT2 Transcriptional r 89.3 0.37 8E-06 40.4 3.0 46 68-113 14-64 (480)
101 KOG4362 Transcriptional regula 88.8 0.11 2.3E-06 47.1 -0.5 47 67-113 20-69 (684)
102 COG5220 TFB3 Cdk activating ki 87.9 0.21 4.6E-06 39.8 0.7 47 67-113 9-64 (314)
103 KOG3053 Uncharacterized conser 87.9 0.24 5.2E-06 39.8 1.0 56 64-119 16-88 (293)
104 KOG3899 Uncharacterized conser 87.6 0.24 5.2E-06 40.6 0.9 28 86-113 325-365 (381)
105 KOG0309 Conserved WD40 repeat- 86.6 0.34 7.4E-06 44.5 1.4 26 82-107 1044-1069(1081)
106 KOG1812 Predicted E3 ubiquitin 85.2 0.49 1.1E-05 40.4 1.6 35 67-101 145-183 (384)
107 KOG3039 Uncharacterized conser 85.1 0.67 1.5E-05 37.2 2.2 35 67-101 42-76 (303)
108 KOG3161 Predicted E3 ubiquitin 84.9 0.3 6.4E-06 44.1 0.2 39 66-106 9-51 (861)
109 KOG2113 Predicted RNA binding 83.7 0.83 1.8E-05 37.9 2.2 56 56-113 331-387 (394)
110 KOG1815 Predicted E3 ubiquitin 83.7 0.72 1.6E-05 40.0 2.0 36 66-101 68-104 (444)
111 PF02891 zf-MIZ: MIZ/SP-RING z 83.4 1.1 2.3E-05 26.9 2.1 42 69-111 3-50 (50)
112 KOG3799 Rab3 effector RIM1 and 83.1 0.88 1.9E-05 33.2 1.9 61 63-123 60-128 (169)
113 KOG3113 Uncharacterized conser 82.4 2.1 4.6E-05 34.5 4.0 62 67-133 110-175 (293)
114 PF14569 zf-UDP: Zinc-binding 81.3 1.8 4E-05 28.5 2.7 49 67-115 8-64 (80)
115 PLN02638 cellulose synthase A 80.1 1.9 4.1E-05 41.3 3.5 58 67-125 16-81 (1079)
116 KOG1812 Predicted E3 ubiquitin 79.8 0.79 1.7E-05 39.1 0.9 41 68-108 306-351 (384)
117 COG2835 Uncharacterized conser 79.2 0.36 7.8E-06 30.2 -1.0 44 104-161 10-53 (60)
118 KOG0824 Predicted E3 ubiquitin 77.3 1.4 3E-05 36.3 1.5 53 67-119 104-157 (324)
119 PF04216 FdhE: Protein involve 77.2 0.59 1.3E-05 38.2 -0.6 45 67-111 171-220 (290)
120 PF06937 EURL: EURL protein; 76.3 5.3 0.00012 32.4 4.5 48 91-152 58-106 (285)
121 PLN02189 cellulose synthase 75.6 3 6.5E-05 39.8 3.4 50 67-116 33-90 (1040)
122 PF02318 FYVE_2: FYVE-type zin 75.5 6.1 0.00013 27.8 4.3 44 67-111 53-103 (118)
123 KOG0825 PHD Zn-finger protein 73.7 1.7 3.6E-05 40.4 1.2 32 82-113 117-154 (1134)
124 PLN02915 cellulose synthase A 70.8 4.7 0.0001 38.6 3.4 58 67-125 14-79 (1044)
125 KOG4718 Non-SMC (structural ma 70.4 1.7 3.7E-05 34.1 0.5 44 67-110 180-224 (235)
126 PLN02400 cellulose synthase 70.4 5 0.00011 38.6 3.6 57 67-124 35-99 (1085)
127 COG5183 SSM4 Protein involved 70.3 4.1 8.8E-05 38.1 2.8 49 66-114 10-67 (1175)
128 KOG3579 Predicted E3 ubiquitin 70.0 2 4.3E-05 35.2 0.8 36 67-102 267-306 (352)
129 TIGR01562 FdhE formate dehydro 69.5 1.4 3.1E-05 36.4 -0.1 45 67-111 183-233 (305)
130 PLN02436 cellulose synthase A 69.5 6 0.00013 38.1 3.9 50 67-116 35-92 (1094)
131 COG5109 Uncharacterized conser 69.0 3.3 7.2E-05 34.5 1.9 45 66-110 334-384 (396)
132 PRK03564 formate dehydrogenase 68.7 1.8 3.8E-05 36.0 0.2 44 67-110 186-234 (309)
133 KOG2231 Predicted E3 ubiquitin 67.9 4.3 9.4E-05 37.1 2.5 46 70-115 2-54 (669)
134 PF07191 zinc-ribbons_6: zinc- 65.3 0.72 1.6E-05 29.8 -2.1 43 69-116 2-44 (70)
135 PF06844 DUF1244: Protein of u 62.5 4.2 9.1E-05 25.9 1.0 12 89-100 11-22 (68)
136 PF13240 zinc_ribbon_2: zinc-r 62.5 1.6 3.6E-05 21.8 -0.7 11 100-110 11-21 (23)
137 PF04710 Pellino: Pellino; In 62.2 2.5 5.5E-05 36.1 0.0 29 82-113 305-339 (416)
138 KOG0827 Predicted E3 ubiquitin 61.5 2.1 4.5E-05 36.6 -0.6 47 67-113 195-245 (465)
139 PF01363 FYVE: FYVE zinc finge 58.8 3.6 7.8E-05 25.8 0.3 33 67-99 8-44 (69)
140 KOG3842 Adaptor protein Pellin 57.4 10 0.00022 31.7 2.7 47 67-113 340-414 (429)
141 PRK04023 DNA polymerase II lar 56.8 12 0.00025 36.0 3.2 45 67-113 625-674 (1121)
142 PF07975 C1_4: TFIIH C1-like d 56.4 9.3 0.0002 23.1 1.8 27 83-109 24-50 (51)
143 KOG2068 MOT2 transcription fac 56.2 9.3 0.0002 31.9 2.3 46 69-114 250-299 (327)
144 smart00647 IBR In Between Ring 55.8 2.3 4.9E-05 26.0 -1.0 15 85-99 45-59 (64)
145 PRK11827 hypothetical protein; 55.5 1.1 2.3E-05 28.2 -2.6 45 101-159 7-51 (60)
146 KOG0269 WD40 repeat-containing 55.1 8.9 0.00019 35.5 2.2 41 70-110 781-825 (839)
147 PF04710 Pellino: Pellino; In 55.0 4 8.7E-05 34.9 0.0 46 68-113 328-401 (416)
148 PF05605 zf-Di19: Drought indu 53.0 8 0.00017 23.2 1.1 36 68-110 2-39 (54)
149 PF13901 DUF4206: Domain of un 52.5 10 0.00022 29.3 1.9 39 67-110 151-197 (202)
150 PF04423 Rad50_zn_hook: Rad50 52.1 6.4 0.00014 23.6 0.6 11 103-113 21-31 (54)
151 COG3058 FdhE Uncharacterized p 51.9 1.4E+02 0.003 24.7 8.4 46 66-111 183-234 (308)
152 TIGR00622 ssl1 transcription f 51.3 14 0.0003 26.1 2.2 41 69-109 56-110 (112)
153 smart00064 FYVE Protein presen 50.3 16 0.00034 22.7 2.2 32 68-99 10-45 (68)
154 PF10497 zf-4CXXC_R1: Zinc-fin 50.3 14 0.00031 25.6 2.2 24 87-110 37-69 (105)
155 PF09723 Zn-ribbon_8: Zinc rib 48.4 5.5 0.00012 22.8 -0.1 30 83-113 8-38 (42)
156 KOG2066 Vacuolar assembly/sort 48.0 14 0.0003 34.5 2.3 46 62-108 778-830 (846)
157 cd00065 FYVE FYVE domain; Zinc 47.9 15 0.00033 21.8 1.8 31 69-99 3-37 (57)
158 PLN02195 cellulose synthase A 46.3 20 0.00042 34.4 3.0 47 67-113 5-59 (977)
159 PF06906 DUF1272: Protein of u 44.7 18 0.00038 22.4 1.7 24 88-113 29-52 (57)
160 KOG1829 Uncharacterized conser 44.6 7 0.00015 35.2 -0.1 41 67-110 510-558 (580)
161 PF09297 zf-NADH-PPase: NADH p 42.9 7.5 0.00016 20.7 -0.1 24 87-110 2-29 (32)
162 KOG4451 Uncharacterized conser 42.7 18 0.00038 28.9 1.8 25 90-114 251-275 (286)
163 COG4647 AcxC Acetone carboxyla 42.7 12 0.00026 27.2 0.9 22 72-93 61-82 (165)
164 PF10146 zf-C4H2: Zinc finger- 41.5 20 0.00044 28.5 2.1 25 90-114 196-220 (230)
165 PF14446 Prok-RING_1: Prokaryo 40.5 32 0.00068 21.1 2.3 30 68-97 5-38 (54)
166 KOG1609 Protein involved in mR 39.5 20 0.00044 28.9 1.9 46 68-113 78-134 (323)
167 smart00290 ZnF_UBP Ubiquitin C 39.0 23 0.00051 20.4 1.6 22 71-92 2-23 (50)
168 smart00132 LIM Zinc-binding do 38.7 24 0.00052 18.6 1.6 34 71-112 2-37 (39)
169 PF01485 IBR: IBR domain; Int 38.3 4.3 9.4E-05 24.6 -1.8 16 84-99 44-59 (64)
170 KOG2807 RNA polymerase II tran 37.3 25 0.00054 29.5 2.0 44 67-110 329-375 (378)
171 KOG0801 Predicted E3 ubiquitin 35.7 12 0.00027 28.2 0.0 25 67-91 176-203 (205)
172 KOG0802 E3 ubiquitin ligase [P 35.7 17 0.00037 32.4 0.9 44 67-114 478-521 (543)
173 KOG2979 Protein involved in DN 35.6 21 0.00046 28.8 1.3 42 69-110 177-221 (262)
174 KOG1356 Putative transcription 34.6 16 0.00034 34.4 0.5 44 67-110 228-279 (889)
175 PF10571 UPF0547: Uncharacteri 34.3 9.4 0.0002 19.7 -0.6 7 71-77 3-9 (26)
176 COG3492 Uncharacterized protei 34.2 18 0.00038 24.6 0.6 12 89-100 42-53 (104)
177 KOG3726 Uncharacterized conser 34.0 21 0.00045 32.8 1.2 38 69-109 655-696 (717)
178 PF14311 DUF4379: Domain of un 33.3 25 0.00055 21.0 1.2 23 85-108 33-55 (55)
179 PF13063 DUF3925: Protein of u 32.5 28 0.00061 21.3 1.2 26 12-37 8-33 (66)
180 PF13248 zf-ribbon_3: zinc-rib 32.3 11 0.00023 19.2 -0.6 7 103-109 17-23 (26)
181 PF14353 CpXC: CpXC protein 32.0 36 0.00078 24.0 2.0 45 69-113 2-49 (128)
182 PRK11595 DNA utilization prote 31.7 42 0.00091 26.2 2.4 37 70-111 7-43 (227)
183 COG3813 Uncharacterized protei 29.4 33 0.00072 22.3 1.2 25 87-113 28-52 (84)
184 PRK14714 DNA polymerase II lar 29.1 36 0.00079 33.6 1.9 46 68-113 667-720 (1337)
185 PF03119 DNA_ligase_ZBD: NAD-d 28.5 34 0.00074 17.8 1.0 11 104-114 1-11 (28)
186 COG0068 HypF Hydrogenase matur 27.7 29 0.00063 32.1 1.0 47 67-113 100-184 (750)
187 PF10235 Cript: Microtubule-as 27.3 29 0.00063 23.5 0.7 37 68-113 44-80 (90)
188 cd00350 rubredoxin_like Rubred 25.9 40 0.00086 18.0 1.0 10 102-111 17-26 (33)
189 PF10764 Gin: Inhibitor of sig 25.8 60 0.0013 19.0 1.8 30 70-100 1-30 (46)
190 KOG2113 Predicted RNA binding 25.2 19 0.00041 30.1 -0.6 47 67-113 135-183 (394)
191 PF11023 DUF2614: Protein of u 25.1 48 0.0011 23.4 1.5 18 97-114 80-97 (114)
192 COG2816 NPY1 NTP pyrophosphohy 24.7 24 0.00053 28.9 -0.0 28 86-113 109-140 (279)
193 KOG2789 Putative Zn-finger pro 24.6 40 0.00087 29.1 1.2 31 69-99 75-107 (482)
194 PF10083 DUF2321: Uncharacteri 24.2 30 0.00066 25.8 0.4 25 87-114 27-51 (158)
195 PRK13908 putative recombinatio 22.7 2.3E+02 0.005 22.1 4.9 34 42-81 118-151 (204)
196 PF06676 DUF1178: Protein of u 22.4 51 0.0011 24.4 1.3 23 86-113 10-43 (148)
197 PF08882 Acetone_carb_G: Aceto 22.2 46 0.001 23.5 1.0 19 73-92 17-35 (112)
198 PF00643 zf-B_box: B-box zinc 22.2 69 0.0015 17.6 1.6 30 68-97 3-32 (42)
199 COG4306 Uncharacterized protei 21.6 37 0.00081 24.6 0.4 22 89-113 29-50 (160)
200 PF13719 zinc_ribbon_5: zinc-r 21.5 49 0.0011 18.2 0.8 8 70-77 4-11 (37)
201 smart00734 ZnF_Rad18 Rad18-lik 21.3 40 0.00088 17.1 0.4 9 104-112 3-11 (26)
202 KOG1814 Predicted E3 ubiquitin 21.3 1.4E+02 0.0031 26.0 3.8 33 67-99 367-405 (445)
203 smart00154 ZnF_AN1 AN1-like Zi 21.1 72 0.0016 17.8 1.5 7 86-92 18-24 (39)
204 KOG3241 Uncharacterized conser 20.6 33 0.00071 26.4 -0.0 56 68-131 67-122 (227)
No 1
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.32 E-value=9.5e-13 Score=104.16 Aligned_cols=56 Identities=34% Similarity=0.921 Sum_probs=47.0
Q ss_pred CCCCcccccccCCCc--------ceeCCCCCcccHhhHHHhcccCCcccccccccccccCCCce
Q 031028 66 EREEECGICMETNSK--------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLW 121 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~--------~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~~~ 121 (167)
..+.+|+||++.+.+ +++++|||.||..||.+|+..+.+||+||.++..+.++..|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 456899999998653 36778999999999999999999999999999877665544
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.29 E-value=1.4e-12 Score=79.39 Aligned_cols=47 Identities=36% Similarity=0.913 Sum_probs=42.0
Q ss_pred CCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
+..|.||++...+.+.++|||. ||..|+.+|......||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999999999999999999 9999999999999999999998874
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.29 E-value=7.5e-13 Score=78.48 Aligned_cols=40 Identities=45% Similarity=1.031 Sum_probs=35.1
Q ss_pred cccccccCCC---cceeCCCCCcccHhhHHHhcccCCcccccc
Q 031028 70 ECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCR 109 (167)
Q Consensus 70 ~C~IC~~~~~---~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr 109 (167)
.|+||++.+. ..+.++|||.||.+|+.+|+..+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999864 457788999999999999999999999997
No 4
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.27 E-value=2.5e-12 Score=98.26 Aligned_cols=53 Identities=25% Similarity=0.756 Sum_probs=44.9
Q ss_pred cccCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc----------------CCccccccccccc
Q 031028 62 DADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----------------SQSCPFCRDSLKR 114 (167)
Q Consensus 62 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----------------~~~CP~Cr~~i~~ 114 (167)
..+..++..|+||++...+++.++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3444567899999999999999999999999999999742 2489999998864
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.21 E-value=7.8e-12 Score=73.48 Aligned_cols=38 Identities=32% Similarity=0.768 Sum_probs=30.1
Q ss_pred ccccccCCCcceeCCCCCcccHhhHHHhcccC----Cccccc
Q 031028 71 CGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~----~~CP~C 108 (167)
|+||++.+.+|+.++|||+||..||.+|.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999888643 379987
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.20 E-value=8e-12 Score=72.21 Aligned_cols=38 Identities=29% Similarity=0.937 Sum_probs=33.9
Q ss_pred ccccccCCCcc-eeCCCCCcccHhhHHHhcccCCccccc
Q 031028 71 CGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~C 108 (167)
|+||++...++ +.++|||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999888999987
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.2e-12 Score=100.24 Aligned_cols=48 Identities=31% Similarity=0.912 Sum_probs=44.8
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+....|.+|++...+|..++|||.||..||..|......||+||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 456899999999999999999999999999999999999999999776
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.3e-12 Score=97.18 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=43.8
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc---CCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~---~~~CP~Cr~~i~~ 114 (167)
...+.|.||++...+|+++.|||.||..||.+|+.. ++.||+|+..+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 466899999999999999999999999999999964 4689999997763
No 9
>PHA02926 zinc finger-like protein; Provisional
Probab=99.18 E-value=1.2e-11 Score=95.84 Aligned_cols=58 Identities=31% Similarity=0.878 Sum_probs=46.4
Q ss_pred CCCCCcccccccCCC---------cceeCCCCCcccHhhHHHhcccC------CcccccccccccccCCCcee
Q 031028 65 IEREEECGICMETNS---------KIVLPNCNHAMCLKCYREWRIRS------QSCPFCRDSLKRVNSGDLWV 122 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~---------~~~~~~CgH~fc~~Ci~~w~~~~------~~CP~Cr~~i~~~~~~~~~~ 122 (167)
.+.+.+|+||++... .+++.+|+|.||..||..|...+ .+||+||..+..+.++..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~~ 239 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFYK 239 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccccee
Confidence 346689999998742 25788999999999999999742 46999999998877766543
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.12 E-value=3.4e-11 Score=79.06 Aligned_cols=42 Identities=33% Similarity=0.966 Sum_probs=34.8
Q ss_pred CCcccccccCCCc-------------ceeCCCCCcccHhhHHHhcccCCcccccc
Q 031028 68 EEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIRSQSCPFCR 109 (167)
Q Consensus 68 ~~~C~IC~~~~~~-------------~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr 109 (167)
+..|+||++.+.+ ....+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4469999988731 25568999999999999999999999997
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.5e-11 Score=89.65 Aligned_cols=48 Identities=29% Similarity=0.779 Sum_probs=42.3
Q ss_pred CCCCcccccccCCCc--ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 66 EREEECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+....|+|||+.+.+ ++.++|||.||..||...+....+||+|++.|+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 355899999999876 467999999999999999999999999998665
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.03 E-value=2.1e-10 Score=72.61 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=42.1
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+||.+.+.+|+.++|||.||..|+.+|+..+.+||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999999999999999999999999988889999998774
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.4e-10 Score=91.93 Aligned_cols=51 Identities=29% Similarity=0.717 Sum_probs=43.3
Q ss_pred CCCCCcccccccC-CC------------cceeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 65 IEREEECGICMET-NS------------KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 65 ~~~~~~C~IC~~~-~~------------~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
..++..|.||++. +. .|..++|||.+|.+|+..|++++++||.||.++-..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 3477899999987 22 248889999999999999999999999999996543
No 14
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.4e-10 Score=93.22 Aligned_cols=99 Identities=35% Similarity=0.634 Sum_probs=82.0
Q ss_pred hhcccccCCCCCcccccccCCCcc--------eeCCCCCcccHhhHHHhcc--c-----CCcccccccccccccCCCcee
Q 031028 58 RQYTDADIEREEECGICMETNSKI--------VLPNCNHAMCLKCYREWRI--R-----SQSCPFCRDSLKRVNSGDLWV 122 (167)
Q Consensus 58 ~~~~~~~~~~~~~C~IC~~~~~~~--------~~~~CgH~fc~~Ci~~w~~--~-----~~~CP~Cr~~i~~~~~~~~~~ 122 (167)
..........+..|.||++..... ++.+|.|.||..||..|.. + .+.||.||.....+.++.+|+
T Consensus 151 e~~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv 230 (344)
T KOG1039|consen 151 ERSFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWV 230 (344)
T ss_pred hhccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceee
Confidence 334445456789999999986654 4478999999999999983 3 479999999999999999999
Q ss_pred ccCcchhhhhhhhhHHHHHHHHHHHhhCCCcCCC
Q 031028 123 YMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPD 156 (167)
Q Consensus 123 ~~~~~~~~d~~~~~~e~~~r~~~~i~~lp~~~~~ 156 (167)
.....+...+.....++.++...|+...+..-|.
T Consensus 231 ~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf 264 (344)
T KOG1039|consen 231 ETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPF 264 (344)
T ss_pred eecccccccHHHHHHHhhccchhhhcCCCCCCCC
Confidence 9988888888888888888888888877776665
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-10 Score=93.10 Aligned_cols=48 Identities=25% Similarity=0.771 Sum_probs=41.0
Q ss_pred CcccccccCCCcc---eeCCCCCcccHhhHHHhcccC-Cccccccccccccc
Q 031028 69 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKRVN 116 (167)
Q Consensus 69 ~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~-~~CP~Cr~~i~~~~ 116 (167)
..|+||+|.+.++ +.+||+|.||..||.+|+... ..||+|++.+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 4899999998864 678999999999999999876 56999999776443
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.00 E-value=2.3e-10 Score=66.54 Aligned_cols=38 Identities=42% Similarity=1.057 Sum_probs=34.9
Q ss_pred ccccccCCCcce-eCCCCCcccHhhHHHhcc--cCCccccc
Q 031028 71 CGICMETNSKIV-LPNCNHAMCLKCYREWRI--RSQSCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~~~-~~~CgH~fc~~Ci~~w~~--~~~~CP~C 108 (167)
|+||++.+..+. .++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999988 999999999999999997 56799987
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=4e-10 Score=95.15 Aligned_cols=51 Identities=27% Similarity=0.673 Sum_probs=46.1
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.++....|+||.+.+..|++++|||.||..|+..|+.....||+|+..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 455678999999999999999999999999999999888899999998764
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.95 E-value=4.4e-10 Score=65.55 Aligned_cols=43 Identities=37% Similarity=0.991 Sum_probs=35.8
Q ss_pred cccccccCCCcce-eCCCCCcccHhhHHHhccc-CCccccccccc
Q 031028 70 ECGICMETNSKIV-LPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 112 (167)
Q Consensus 70 ~C~IC~~~~~~~~-~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i 112 (167)
.|+||++.+..++ .++|||.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4899999985554 4559999999999999986 67899998753
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.95 E-value=2.4e-10 Score=93.39 Aligned_cols=56 Identities=23% Similarity=0.573 Sum_probs=48.6
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccccccCCCce
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLW 121 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~~~ 121 (167)
....+|.||.+.|..|++++|||.||..||+..+..+..||.|+.++..-.....+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~ 76 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNR 76 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhh
Confidence 35578999999999999999999999999999999999999999988754444333
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.89 E-value=8.1e-10 Score=88.73 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=46.7
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 116 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~ 116 (167)
......|-||.+.+..|..++|||.||..||...+..+..||+||.+.....
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 3455789999999999999999999999999999999999999999876543
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.89 E-value=1.2e-09 Score=64.67 Aligned_cols=41 Identities=37% Similarity=0.962 Sum_probs=35.5
Q ss_pred cccccccCC---CcceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 70 ECGICMETN---SKIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 70 ~C~IC~~~~---~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
.|++|++.+ ..+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999887 24789999999999999998866789999984
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.85 E-value=1.7e-09 Score=60.86 Aligned_cols=38 Identities=37% Similarity=1.038 Sum_probs=34.4
Q ss_pred ccccccCCCcceeCCCCCcccHhhHHHhcc-cCCccccc
Q 031028 71 CGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~-~~~~CP~C 108 (167)
|+||++....++.++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988889999999999999999997 56789987
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.82 E-value=2.3e-09 Score=71.64 Aligned_cols=47 Identities=30% Similarity=0.829 Sum_probs=37.9
Q ss_pred CCCcccccccCCC-------------cceeCCCCCcccHhhHHHhccc---CCcccccccccc
Q 031028 67 REEECGICMETNS-------------KIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~-------------~~~~~~CgH~fc~~Ci~~w~~~---~~~CP~Cr~~i~ 113 (167)
.+..|+||...+. ..+...|+|.||..||.+|+.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4678888887654 1255689999999999999975 469999999875
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.4e-09 Score=91.65 Aligned_cols=47 Identities=36% Similarity=0.786 Sum_probs=41.8
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccC-----Cccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-----QSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~-----~~CP~Cr~~i~~ 114 (167)
+..|+||++....+..+.|||.||..||.+++..+ ..||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999998766543 599999998875
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.4e-09 Score=84.04 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=42.5
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHH-hcccCC-cccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYRE-WRIRSQ-SCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~-w~~~~~-~CP~Cr~~i~ 113 (167)
..+..|.||++....+..++|||.||..||.. |-..+. .||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45789999999999999999999999999998 877664 5999999765
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.3e-09 Score=84.99 Aligned_cols=47 Identities=32% Similarity=0.850 Sum_probs=40.9
Q ss_pred CCCcccccccCCCc---ceeCCCCCcccHhhHHHhcc-cCCcccccccccc
Q 031028 67 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~ 113 (167)
...+|+|||+.+.+ -+.+||.|.||..|+.+|+. .+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 44789999999764 37789999999999999997 6789999999875
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.66 E-value=8.7e-09 Score=60.66 Aligned_cols=35 Identities=34% Similarity=0.824 Sum_probs=21.8
Q ss_pred ccccccCCCc----ceeCCCCCcccHhhHHHhcccC----Cccc
Q 031028 71 CGICMETNSK----IVLPNCNHAMCLKCYREWRIRS----QSCP 106 (167)
Q Consensus 71 C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~----~~CP 106 (167)
|+||.+ +.. |+.++|||+||.+|+.++...+ .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 665 8889999999999999998743 3665
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.1e-08 Score=90.27 Aligned_cols=45 Identities=36% Similarity=0.731 Sum_probs=41.5
Q ss_pred CCCcccccccCCCc-----ceeCCCCCcccHhhHHHhcccCCcccccccc
Q 031028 67 REEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~-----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
.+..|.||.+.... +..++|||.||..|+..|+.++++||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 47899999999776 7889999999999999999999999999983
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.60 E-value=2.6e-08 Score=65.28 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=39.6
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~~ 114 (167)
+.+.|+|+.+.+.+|+++++||+|+..+|..|+.. ..+||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45789999999999999999999999999999988 8899999988763
No 30
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-08 Score=61.98 Aligned_cols=48 Identities=35% Similarity=0.790 Sum_probs=41.2
Q ss_pred CCCcccccccCCCcceeCCCCCc-ccHhhHHHhc-ccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHA-MCLKCYREWR-IRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~-~~~~~CP~Cr~~i~~ 114 (167)
.+.+|.||++...+.++..|||. +|..|-.+.. ..+..||.||+++..
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 34789999999999999899999 8999987554 477899999999874
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.1e-07 Score=75.64 Aligned_cols=46 Identities=35% Similarity=0.738 Sum_probs=40.8
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
..+...|+||++.+..+.+++|||.||..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3466899999999999999999999999999988775679999994
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.38 E-value=7.3e-08 Score=60.95 Aligned_cols=45 Identities=29% Similarity=0.701 Sum_probs=25.2
Q ss_pred CCCcccccccCCCcce-eCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIV-LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~-~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|++|.+.+..|+ +..|.|.||..|+..-+. ..||+|+.+..
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 4568999999999997 579999999999987554 35999988754
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.6e-07 Score=77.57 Aligned_cols=50 Identities=30% Similarity=0.854 Sum_probs=45.3
Q ss_pred CCCCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCcccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
+...+|.||+....+.+++||.|. .|..|.....-+++.||+||+++...
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 346799999999999999999999 99999999888889999999998754
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.5e-07 Score=72.97 Aligned_cols=72 Identities=18% Similarity=0.443 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhhHHHhhcccccCCCCCcccccccCCC----------cceeCCCCCcccHhhHHHhcc--cCCcccccc
Q 031028 42 KAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNS----------KIVLPNCNHAMCLKCYREWRI--RSQSCPFCR 109 (167)
Q Consensus 42 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~----------~~~~~~CgH~fc~~Ci~~w~~--~~~~CP~Cr 109 (167)
...|.+.......--.......+-.++..|++|-..+. +...+.|+|+||..||+.|.. ..++||.|+
T Consensus 198 a~icsd~mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCK 277 (328)
T KOG1734|consen 198 AEICSDYMASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCK 277 (328)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHH
Confidence 35566655555432222233334446789999986533 346789999999999999974 567999999
Q ss_pred cccc
Q 031028 110 DSLK 113 (167)
Q Consensus 110 ~~i~ 113 (167)
..+.
T Consensus 278 ekVd 281 (328)
T KOG1734|consen 278 EKVD 281 (328)
T ss_pred HHhh
Confidence 8764
No 35
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.36 E-value=2e-07 Score=84.89 Aligned_cols=86 Identities=20% Similarity=0.470 Sum_probs=59.7
Q ss_pred CCchhhhHHHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHhhhhHHHhhcccccCCCCCcccccccCCC-------c
Q 031028 8 RSPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNS-------K 80 (167)
Q Consensus 8 ~~~w~~si~~f~~~i~p~l~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~-------~ 80 (167)
-..|++||...+.++... .+.+.|. .+.+.++. ..++++..+|+||+.... .
T Consensus 1430 E~~wkswI~~~q~~~~~~----ngs~~D~---------l~l~kkNi--------~~~fsG~eECaICYsvL~~vdr~lPs 1488 (1525)
T COG5219 1430 EIGWKSWINLRQNEMIKK----NGSFMDL---------LGLWKKNI--------DEKFSGHEECAICYSVLDMVDRSLPS 1488 (1525)
T ss_pred HHHHHHHHHHHHHHHHhc----cchHHHH---------HHHHHhhh--------hhhcCCcchhhHHHHHHHHHhccCCc
Confidence 367999999988887332 2222222 23444444 345667789999996633 2
Q ss_pred ceeCCCCCcccHhhHHHhccc--CCccccccccccc
Q 031028 81 IVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKR 114 (167)
Q Consensus 81 ~~~~~CgH~fc~~Ci~~w~~~--~~~CP~Cr~~i~~ 114 (167)
.....|.|.||..|+.+|+.. +.+||+||..++.
T Consensus 1489 krC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1489 KRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 356679999999999999964 5799999987763
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=7e-07 Score=73.09 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=35.3
Q ss_pred CCcccccccC--CCcc---eeCCCCCcccHhhHHHhc-ccCCccccccccccc
Q 031028 68 EEECGICMET--NSKI---VLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~--~~~~---~~~~CgH~fc~~Ci~~w~-~~~~~CP~Cr~~i~~ 114 (167)
+..|++|... .... ...+|||.||.+|+...+ .....||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4689999985 2222 222799999999999855 455799999998764
No 37
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.23 E-value=6e-07 Score=58.96 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.1
Q ss_pred eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 82 VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
+-..|.|.||..||.+|+..+..||++|++...
T Consensus 50 ~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred EEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 445699999999999999999999999998753
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.8e-07 Score=81.48 Aligned_cols=47 Identities=23% Similarity=0.684 Sum_probs=41.7
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhc-ccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~-~~~~~CP~Cr~~i~ 113 (167)
.-..|+.|.....+.+++.|||.||..|+.... .++.+||.|...+.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 457999999888899999999999999999766 46789999999876
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-06 Score=71.15 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=40.9
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccC-Cccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~-~~CP~Cr~~i~~ 114 (167)
...+|+||+.....|+.+.|+|.||..||..-.... .+|++||.+|..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 346799999999999999999999999998655544 579999999873
No 40
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.5e-06 Score=73.72 Aligned_cols=51 Identities=33% Similarity=0.762 Sum_probs=46.2
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....++.|.||+..+..|+.++|||.||..|+.+-+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 335779999999999999999999999999999988888999999998874
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.04 E-value=1.5e-06 Score=72.88 Aligned_cols=50 Identities=34% Similarity=0.891 Sum_probs=43.2
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcc--cCCcccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRI--RSQSCPFCRDSLKRV 115 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~--~~~~CP~Cr~~i~~~ 115 (167)
+.-..|.||.+...+..+-+|||..|..|+..|.. .+++||+||..|+.-
T Consensus 367 sTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 367 STFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred chHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 34568999999999999999999999999999984 368999999988743
No 42
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.7e-06 Score=74.20 Aligned_cols=48 Identities=31% Similarity=0.745 Sum_probs=39.1
Q ss_pred CCCCcccccccCCC-----------------cceeCCCCCcccHhhHHHhcc-cCCcccccccccc
Q 031028 66 EREEECGICMETNS-----------------KIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~-----------------~~~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~ 113 (167)
+....|+|||.... +-..+||.|.||..|+.+|.. .+-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45578999997743 135679999999999999998 4559999999875
No 43
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=9.1e-07 Score=57.63 Aligned_cols=47 Identities=32% Similarity=0.773 Sum_probs=35.7
Q ss_pred CCCcccccccCCCc-------------ceeCCCCCcccHhhHHHhccc---CCcccccccccc
Q 031028 67 REEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~-------------~~~~~CgH~fc~~Ci~~w~~~---~~~CP~Cr~~i~ 113 (167)
.+..|.||.-.|.. -+...|.|.|+..||.+|+.. +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34578888766541 244569999999999999953 469999999765
No 44
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.89 E-value=4.9e-06 Score=63.86 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=41.4
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+.|.||...+..|+.+.|||.||..|...-.+....|-+|.+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4789999999999999999999999999887788889999987554
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.84 E-value=3e-06 Score=55.03 Aligned_cols=46 Identities=37% Similarity=0.913 Sum_probs=23.2
Q ss_pred CCcccccccCCC-c---c--ee--CCCCCcccHhhHHHhccc---C--------Ccccccccccc
Q 031028 68 EEECGICMETNS-K---I--VL--PNCNHAMCLKCYREWRIR---S--------QSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~-~---~--~~--~~CgH~fc~~Ci~~w~~~---~--------~~CP~Cr~~i~ 113 (167)
+..|+||++... . + +. ..|+..||..|+.+|+.. + ..||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998744 2 2 22 279999999999999853 1 27999999876
No 46
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.81 E-value=9.1e-06 Score=69.13 Aligned_cols=49 Identities=33% Similarity=0.717 Sum_probs=44.6
Q ss_pred CCCCCcccccccCCCccee-CCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+.+..|++|+....+|+. +.|||.||..|+..|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 5577899999999999988 499999999999999999999999988765
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=3.2e-06 Score=69.83 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=40.1
Q ss_pred CCCCCcccccccCCCccee-CCCCCcccHhhHHHhc-ccCCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVL-PNCNHAMCLKCYREWR-IRSQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~-~~~~~CP~Cr~~i~~ 114 (167)
+..+..|+||++.+..... ..|+|.||..||..-+ ...+.||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4467899999999877544 5799999999997555 466899999997753
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.5e-05 Score=64.47 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=42.8
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.+.|-||...+..|+.+.|||.||..|...-++....|++|.+.+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 36799999999999999999999999999888888999999987764
No 49
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.68 E-value=2.6e-05 Score=47.07 Aligned_cols=40 Identities=20% Similarity=0.741 Sum_probs=31.4
Q ss_pred ccccccc--CCCcceeCCCC-----CcccHhhHHHhccc--CCcccccc
Q 031028 70 ECGICME--TNSKIVLPNCN-----HAMCLKCYREWRIR--SQSCPFCR 109 (167)
Q Consensus 70 ~C~IC~~--~~~~~~~~~Cg-----H~fc~~Ci~~w~~~--~~~CP~Cr 109 (167)
.|.||++ ...++...||. |.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 34456778885 88999999999954 45999984
No 50
>PHA03096 p28-like protein; Provisional
Probab=97.68 E-value=6.5e-05 Score=61.28 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=59.2
Q ss_pred CchhhhHHHHHHHHhHHHHHHhhccCchHHHHH-HHHHHHHHHhhhhHHHhhcccccCCCCCcccccccCCC--------
Q 031028 9 SPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQ-KAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNS-------- 79 (167)
Q Consensus 9 ~~w~~si~~f~~~i~p~l~~l~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~-------- 79 (167)
+++........|.+...-..--....+.+++.+ ...|.......+ .. ..|.||++...
T Consensus 131 c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~------~~-------k~c~ic~e~~~~k~~~~~~ 197 (284)
T PHA03096 131 CYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLL------LS-------KICGICLENIKAKYIIKKY 197 (284)
T ss_pred cccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHH------HH-------hhcccchhhhhhhcccccc
Confidence 344455555555555544222222455555544 333433332222 00 57999998844
Q ss_pred cceeCCCCCcccHhhHHHhcccC------Ccccccccccccc----------cCCCceecc
Q 031028 80 KIVLPNCNHAMCLKCYREWRIRS------QSCPFCRDSLKRV----------NSGDLWVYM 124 (167)
Q Consensus 80 ~~~~~~CgH~fc~~Ci~~w~~~~------~~CP~Cr~~i~~~----------~~~~~~~~~ 124 (167)
.+.+..|.|.||..|+..|.... ..||.|+..+..+ .++.+|+..
T Consensus 198 fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~ 258 (284)
T PHA03096 198 YGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDD 258 (284)
T ss_pred ccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHHhhcchhhhccCCchhhhcC
Confidence 24777999999999999998543 3555555555444 566666654
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3.9e-05 Score=61.58 Aligned_cols=55 Identities=24% Similarity=0.632 Sum_probs=43.0
Q ss_pred ccccCCCCCcccccccCCCccee-CCCCCcccHhhHHHhcc--cCCcccccccccccc
Q 031028 61 TDADIEREEECGICMETNSKIVL-PNCNHAMCLKCYREWRI--RSQSCPFCRDSLKRV 115 (167)
Q Consensus 61 ~~~~~~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~--~~~~CP~Cr~~i~~~ 115 (167)
.+.....+.+|++|-+....|.. .+|||.||+.|+..-+. .+.+||.|..+...+
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 34445677899999999988855 46999999999986554 347999998876643
No 52
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=6.8e-05 Score=62.23 Aligned_cols=51 Identities=22% Similarity=0.610 Sum_probs=45.9
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+++..|+||+......+..||+|.-|+.||.+.+...+.|=+|+..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 345788999999999999999999999999999999999999999987763
No 53
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.2e-05 Score=53.29 Aligned_cols=31 Identities=26% Similarity=0.633 Sum_probs=27.4
Q ss_pred eCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 83 LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 83 ~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
-..|.|.||..||.+|++..+.||+|.+.-.
T Consensus 78 WG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 3469999999999999999999999987643
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.52 E-value=5.4e-05 Score=65.73 Aligned_cols=48 Identities=29% Similarity=0.812 Sum_probs=41.2
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-----CCcccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-----SQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-----~~~CP~Cr~~i~ 113 (167)
.....|.+|.+...+++.+.|.|.||..|+..+... ..+||+|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 356789999999999999999999999999888742 369999987765
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.52 E-value=5.6e-05 Score=47.09 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=29.2
Q ss_pred CCCcccccccCCCccee-CCCCCcccHhhHHHhcc--cCCcccc
Q 031028 67 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRI--RSQSCPF 107 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~--~~~~CP~ 107 (167)
....|+|.+..+.+|+. ..|||.|....|.+|++ ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45789999999999977 58999999999999994 3468998
No 56
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.48 E-value=5.4e-05 Score=64.43 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=36.2
Q ss_pred CCCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 66 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+.-+|++|++.... .+.+.|.|.|+..|+..|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 355799999987543 25568999999999999954 57999997544
No 57
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=3.8e-05 Score=62.17 Aligned_cols=43 Identities=35% Similarity=0.906 Sum_probs=37.2
Q ss_pred CCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
+..|+|||+...+.+.++|||. -|.+|-.+. +.||+||+-+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 6789999999999999999998 799997654 379999986653
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.32 E-value=3.6e-05 Score=63.15 Aligned_cols=49 Identities=20% Similarity=0.552 Sum_probs=42.7
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
....|.+|..++.++ .++.|-|+||.+||...+...+.||.|...+...
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 567899999999987 4467999999999999999999999999877643
No 59
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0002 Score=60.05 Aligned_cols=42 Identities=26% Similarity=0.781 Sum_probs=31.5
Q ss_pred CcccccccCCCc----ceeCCCCCcccHhhHHHhcccC---Cccccccc
Q 031028 69 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIRS---QSCPFCRD 110 (167)
Q Consensus 69 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~---~~CP~Cr~ 110 (167)
..|.||.+.+.. ..+..|||+||..|+.+|+... .+||.|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 469999544332 2333599999999999999753 48999993
No 60
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00028 Score=55.72 Aligned_cols=46 Identities=26% Similarity=0.794 Sum_probs=32.6
Q ss_pred cccccccCCC-c-ceeCCCCCcccHhhHHHhcccCCcccccccccccccC
Q 031028 70 ECGICMETNS-K-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117 (167)
Q Consensus 70 ~C~IC~~~~~-~-~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~ 117 (167)
.|.-|..... . -.++.|+|+||..|...-. ...||.|++++..+..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeec
Confidence 5777765533 2 3788999999999975422 2389999998765433
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.09 E-value=9.9e-05 Score=66.66 Aligned_cols=48 Identities=23% Similarity=0.601 Sum_probs=36.9
Q ss_pred CcccccccCCCcc---eeCCCCCcccHhhHHHhcccCCccccccccccccc
Q 031028 69 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 116 (167)
Q Consensus 69 ~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~ 116 (167)
..|++|+..+.+. ...+|+|.||..|+..|-...++||+||..+..+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 4566666554332 33469999999999999999999999999887654
No 62
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.05 E-value=0.00029 Score=43.26 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=36.9
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....|..|.........++|||..|..|...+. -+.||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER--YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh--ccCCCCCCCcccC
Confidence 345688888888888999999999999976543 3679999988763
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.91 E-value=0.0017 Score=44.74 Aligned_cols=36 Identities=19% Similarity=0.521 Sum_probs=28.0
Q ss_pred ccccCCCCCcccccccCCCcc--eeCCCCCcccHhhHH
Q 031028 61 TDADIEREEECGICMETNSKI--VLPNCNHAMCLKCYR 96 (167)
Q Consensus 61 ~~~~~~~~~~C~IC~~~~~~~--~~~~CgH~fc~~Ci~ 96 (167)
.......+..|++|...+... +..||||.||..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 334456778899999887653 667999999999975
No 64
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00054 Score=57.89 Aligned_cols=45 Identities=27% Similarity=0.772 Sum_probs=36.3
Q ss_pred CCcccccccCCCc-----ceeCCCCCcccHhhHHHhccc--CCccccccccc
Q 031028 68 EEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSL 112 (167)
Q Consensus 68 ~~~C~IC~~~~~~-----~~~~~CgH~fc~~Ci~~w~~~--~~~CP~Cr~~i 112 (167)
...|+||++.... .+.+.|||.|...||++|+.. ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4689999988553 377889999999999999952 35999997643
No 65
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0014 Score=59.76 Aligned_cols=67 Identities=21% Similarity=0.430 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhhHHHhhcccccCC----CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCccccccccc
Q 031028 43 AVYMERYRRRDDEEQRQYTDADIE----REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112 (167)
Q Consensus 43 ~~~~e~~~~~~~~~~~~~~~~~~~----~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i 112 (167)
+...+.+.+.+++.+......... ....|..|-....-| |...|||.||.+|+. .....||.|+...
T Consensus 811 ~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 811 EDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 344456666665554444443332 236899998887766 667899999999998 4567999998743
No 66
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.63 E-value=0.0032 Score=51.45 Aligned_cols=48 Identities=25% Similarity=0.694 Sum_probs=36.2
Q ss_pred CCCcccccccCCCc---ceeCCCCCcccHhhHHHhccc-----------------------CCccccccccccc
Q 031028 67 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR-----------------------SQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~~-----------------------~~~CP~Cr~~i~~ 114 (167)
....|.||+--|.. -..+.|-|-||..|+.+++.. ...||+||..|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45689999866543 367899999999999776531 1389999998874
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0016 Score=54.17 Aligned_cols=46 Identities=24% Similarity=0.725 Sum_probs=35.2
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.....|.||.+...+.+..+|||.-| |..-.. .-..||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 34578999999999999999999865 654322 23459999998764
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.48 E-value=0.00092 Score=56.31 Aligned_cols=51 Identities=31% Similarity=0.628 Sum_probs=38.3
Q ss_pred ccCCCCCcccccccCCC----cceeCCCCCcccHhhHHHhccc--CCcccccccccc
Q 031028 63 ADIEREEECGICMETNS----KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLK 113 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~--~~~CP~Cr~~i~ 113 (167)
...+.+..|..|-+..- .-.-+||.|+||..|+...+.. ..+||-||+-..
T Consensus 360 ~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 360 CVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 33445678999987743 2355799999999999988854 469999995444
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0023 Score=53.30 Aligned_cols=51 Identities=25% Similarity=0.602 Sum_probs=42.3
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHh--cccCCcccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREW--RIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w--~~~~~~CP~Cr~~i~~~ 115 (167)
.++...|.||.+...-...+||+|..|.-|..+. +...+.||+||..-..+
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 3456789999999888889999999999998754 46789999999866543
No 70
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.30 E-value=0.0035 Score=56.89 Aligned_cols=45 Identities=31% Similarity=0.865 Sum_probs=38.0
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccC--Cccccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 114 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~--~~CP~Cr~~i~~ 114 (167)
..|.+|++ ...++.+.|||.||..|+..-+... ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 7778999999999999998777543 479999987753
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.25 E-value=0.002 Score=52.57 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=36.2
Q ss_pred CcccccccCCCcceeC-CCCCcccHhhHHHhc-ccCCccccccc
Q 031028 69 EECGICMETNSKIVLP-NCNHAMCLKCYREWR-IRSQSCPFCRD 110 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~-~~~~~CP~Cr~ 110 (167)
+.|+.|.....+++.+ .|||.||.+||..-+ .....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999999998777 689999999998544 56789999976
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0029 Score=52.12 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=36.8
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCcccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
....|++|+....++ ++.--|-+||..|+..++...+.||+=..+
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 457899999887665 555569999999999999999999985443
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.17 E-value=0.0036 Score=60.38 Aligned_cols=70 Identities=24% Similarity=0.625 Sum_probs=46.7
Q ss_pred cCCCCCcccccccCC---CcceeCCCCCcccHhhHHHhcccC----------CcccccccccccccCCCceeccCcchhh
Q 031028 64 DIEREEECGICMETN---SKIVLPNCNHAMCLKCYREWRIRS----------QSCPFCRDSLKRVNSGDLWVYMDSRDII 130 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~---~~~~~~~CgH~fc~~Ci~~w~~~~----------~~CP~Cr~~i~~~~~~~~~~~~~~~~~~ 130 (167)
+...+..|-||+..- ...+.+.|+|.||..|.++.+.+. ..||+|..+|.-.. ..+++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~---------LkDLl 3552 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV---------LKDLL 3552 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH---------HHHHH
Confidence 445678999998662 245889999999999997655432 39999998876321 13445
Q ss_pred hhhhhhHHHHHH
Q 031028 131 DSATVTRENLRR 142 (167)
Q Consensus 131 d~~~~~~e~~~r 142 (167)
|....-.++.+|
T Consensus 3553 dPiKel~edV~~ 3564 (3738)
T KOG1428|consen 3553 DPIKELYEDVRR 3564 (3738)
T ss_pred HHHHHHHHHHHH
Confidence 555444555444
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.17 E-value=0.0047 Score=36.99 Aligned_cols=42 Identities=26% Similarity=0.691 Sum_probs=21.2
Q ss_pred ccccccCCCc--cee--CCCCCcccHhhHHHhcc-cCCccccccccc
Q 031028 71 CGICMETNSK--IVL--PNCNHAMCLKCYREWRI-RSQSCPFCRDSL 112 (167)
Q Consensus 71 C~IC~~~~~~--~~~--~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i 112 (167)
|++|.+.... ... =+||+.+|..|....+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6788877532 122 26899999999998886 578999999864
No 75
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0039 Score=50.88 Aligned_cols=44 Identities=34% Similarity=0.765 Sum_probs=36.2
Q ss_pred CcccccccCCC------cceeCCCCCcccHhhHHHhccc-CCccccccccc
Q 031028 69 EECGICMETNS------KIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 112 (167)
Q Consensus 69 ~~C~IC~~~~~------~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i 112 (167)
..|.||-+.++ .|..+.|||.+|..|+...+.. ...||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999987765 3677889999999999988764 46899999875
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.99 E-value=0.015 Score=46.80 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=39.0
Q ss_pred CCCCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....+.|+|....+.. ..+.+|||+|+..++...- ....||+|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3466899999887753 3667999999999999874 4568999999887
No 77
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.61 E-value=0.014 Score=49.20 Aligned_cols=67 Identities=25% Similarity=0.615 Sum_probs=40.0
Q ss_pred HHHHhhhhHHHhhcccccCCCCCcccccccCCCccee-----------------CC-----CCCcccHhhHHHhcccC--
Q 031028 47 ERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVL-----------------PN-----CNHAMCLKCYREWRIRS-- 102 (167)
Q Consensus 47 e~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~-----------------~~-----CgH~fc~~Ci~~w~~~~-- 102 (167)
+.+.+..+...........++...|--|+....+.++ .+ |....|.+|+.+|+...
T Consensus 250 e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd 329 (358)
T PF10272_consen 250 EAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQD 329 (358)
T ss_pred HHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCC
Confidence 4555554433333333344566778888865332211 12 34446889999998432
Q ss_pred -----------Ccccccccccc
Q 031028 103 -----------QSCPFCRDSLK 113 (167)
Q Consensus 103 -----------~~CP~Cr~~i~ 113 (167)
-.||+||+.+.
T Consensus 330 ~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 330 QQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCChhhhhcCCCCCCCCcccce
Confidence 39999999876
No 78
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.01 Score=47.31 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.6
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|++|.+...+ .++-+|||+||..|+.+.......||+|-.++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 56789999988775 377899999999999999999999999988776
No 79
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.55 E-value=0.0071 Score=49.80 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=36.5
Q ss_pred CCCCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.+-..|+||.+....|+.. +=||..|..|-.+ ..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 3557999999999988655 2389999999754 46789999998873
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.011 Score=44.93 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=32.9
Q ss_pred CcccccccCCCcc-------eeCCCCCcccHhhHHHhccc-----C------Cccccccccccc
Q 031028 69 EECGICMETNSKI-------VLPNCNHAMCLKCYREWRIR-----S------QSCPFCRDSLKR 114 (167)
Q Consensus 69 ~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~-----~------~~CP~Cr~~i~~ 114 (167)
..|.||+..--++ -...||..||.-|+..|+.. + ..||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4577776552222 23469999999999999853 1 389999998864
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.10 E-value=0.016 Score=43.20 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=23.8
Q ss_pred CCcccccccCCCcceeCCC------------CCc-ccHhhHHHhc
Q 031028 68 EEECGICMETNSKIVLPNC------------NHA-MCLKCYREWR 99 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~C------------gH~-fc~~Ci~~w~ 99 (167)
+..|+|||+..-+.|++-| +.. -+..|+.+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 5689999999988887754 333 2677888764
No 82
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.97 E-value=0.013 Score=50.31 Aligned_cols=36 Identities=25% Similarity=0.654 Sum_probs=31.8
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR 101 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~ 101 (167)
+++..|+||...+.+|++++|||..|..|....+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 466889999999999999999999999999876643
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.0094 Score=50.59 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=33.5
Q ss_pred CCCcccccccCCCc---ceeCCCCCcccHhhHHHhccc--------CCccccccc
Q 031028 67 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR--------SQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~~--------~~~CP~Cr~ 110 (167)
....|.||++.... -+.++|+|.||..|+..+... .-.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45789999988543 478899999999999887632 137877654
No 84
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.035 Score=45.17 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=32.5
Q ss_pred cccccccC-CCcc----eeCCCCCcccHhhHHHhccc-CCcccccccccc
Q 031028 70 ECGICMET-NSKI----VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113 (167)
Q Consensus 70 ~C~IC~~~-~~~~----~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~ 113 (167)
.|++|... ...| ..-+|||..|.+|....+.. ...||-|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 58888765 2222 22389999999999998864 569999976554
No 85
>PHA02862 5L protein; Provisional
Probab=94.61 E-value=0.03 Score=41.19 Aligned_cols=44 Identities=20% Similarity=0.589 Sum_probs=33.2
Q ss_pred CcccccccCCCcceeCCCCC-----cccHhhHHHhccc--CCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNH-----AMCLKCYREWRIR--SQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH-----~fc~~Ci~~w~~~--~~~CP~Cr~~i~ 113 (167)
..|-||.+...+. ..||.- ..|.+|+.+|+.. ...|+.|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 5799999886544 345543 3689999999964 469999998765
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.014 Score=47.90 Aligned_cols=45 Identities=29% Similarity=0.699 Sum_probs=32.5
Q ss_pred CcccccccCCC-cceeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 69 EECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 69 ~~C~IC~~~~~-~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
..|.-|--.+. -+...+|.|.||++|... ...+.||.|-..+.++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 35666644433 357789999999999854 3367999999887754
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.34 E-value=0.045 Score=31.94 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=22.2
Q ss_pred ccccccCCCcceeC---CCCCcccHhhHHHhcccCC--ccccc
Q 031028 71 CGICMETNSKIVLP---NCNHAMCLKCYREWRIRSQ--SCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~~~~~---~CgH~fc~~Ci~~w~~~~~--~CP~C 108 (167)
|.+|.+....++.= .|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788887766443 4888999999998886544 79987
No 88
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.77 E-value=0.083 Score=39.47 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=34.7
Q ss_pred CCCCcccccccCCCcceeCCCC--C---cccHhhHHHhccc--CCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCN--H---AMCLKCYREWRIR--SQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~Cg--H---~fc~~Ci~~w~~~--~~~CP~Cr~~i~~ 114 (167)
..+..|-||.+.... ...||. . ..|.+|+.+|+.. ...|+.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 355789999988543 234554 3 2499999999964 4699999998753
No 89
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.26 E-value=0.055 Score=39.24 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=36.8
Q ss_pred CCCcccccccCCCcceeC----CCCCcccHhhHHHhcc---cCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLP----NCNHAMCLKCYREWRI---RSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~----~CgH~fc~~Ci~~w~~---~~~~CP~Cr~~i~~ 114 (167)
.-.+|.||.|...+...+ -||-..|..|--...+ ....||+|+..+.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 557999999997765333 3999999999875443 35799999988774
No 90
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.044 Score=42.87 Aligned_cols=39 Identities=31% Similarity=0.804 Sum_probs=32.4
Q ss_pred ccccccCCCcceeCCCCCc-ccHhhHHHhcccCCcccccccccc
Q 031028 71 CGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 71 C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
|-.|.+......++||.|. +|..|-.. -..||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 9999998888899999998 89999654 356999998654
No 91
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.12 E-value=0.083 Score=31.46 Aligned_cols=34 Identities=35% Similarity=0.776 Sum_probs=23.7
Q ss_pred ceeCCC-CCcccHhhHHHhcccCCccccccccccc
Q 031028 81 IVLPNC-NHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 81 ~~~~~C-gH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+..| .|-.|..|+...+..+..||+|..++..
T Consensus 13 k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 13 KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 334457 4778999999999999999999988763
No 92
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.15 Score=40.24 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=37.0
Q ss_pred CCCCcccccccCCCc--ceeCCCCCcccHhhHHHhccc--------CCcccccccccc
Q 031028 66 EREEECGICMETNSK--IVLPNCNHAMCLKCYREWRIR--------SQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~~~--------~~~CP~Cr~~i~ 113 (167)
+..-.|..|-..... .+.+.|-|.||..|+..|-.. .-.||.|..+|-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 345679999877554 477789999999999999643 248999988764
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.12 Score=43.82 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCCcccccccC---CCcceeCCCCCcccHhhHHHhcccC---Cccccccc
Q 031028 67 REEECGICMET---NSKIVLPNCNHAMCLKCYREWRIRS---QSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~---~~~~~~~~CgH~fc~~Ci~~w~~~~---~~CP~Cr~ 110 (167)
..+.|||=.+. .++|..+.|||+.+..-+.+....+ .+||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 45789987655 3458899999999999999987643 59999944
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.64 E-value=0.032 Score=53.35 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=40.1
Q ss_pred CCCCcccccccCCC-cceeCCCCCcccHhhHHHhcccCCccccccccc
Q 031028 66 EREEECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112 (167)
Q Consensus 66 ~~~~~C~IC~~~~~-~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i 112 (167)
.....|.||.+... ......|||.+|..|...|+..+..||.|....
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 34568999999977 566777999999999999999999999998543
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.50 E-value=0.057 Score=39.23 Aligned_cols=33 Identities=27% Similarity=0.663 Sum_probs=24.9
Q ss_pred CCcccccccCCCc--c-eeCCCC------CcccHhhHHHhcc
Q 031028 68 EEECGICMETNSK--I-VLPNCN------HAMCLKCYREWRI 100 (167)
Q Consensus 68 ~~~C~IC~~~~~~--~-~~~~Cg------H~fc~~Ci~~w~~ 100 (167)
..+|.||++.... + +..+|| |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999988665 3 333454 7799999999943
No 96
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.03 E-value=0.12 Score=47.74 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=35.7
Q ss_pred CCCcccccccCCCc--c--eeCCCCCcccHhhHHHhcccC-------Ccccccccccc
Q 031028 67 REEECGICMETNSK--I--VLPNCNHAMCLKCYREWRIRS-------QSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~--~--~~~~CgH~fc~~Ci~~w~~~~-------~~CP~Cr~~i~ 113 (167)
...+|.||.+.+.. + ....|=|+||..||..|-... =.||.|+....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 45789999998653 2 334688999999999997532 28999986544
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.71 E-value=0.15 Score=41.59 Aligned_cols=43 Identities=30% Similarity=0.660 Sum_probs=35.4
Q ss_pred CCcccccccCCC----cceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 68 EEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 68 ~~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
...|+||.+... .+..++|||..+..|+......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999997743 4677899999999999988766699999987
No 98
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=0.58 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCCCCcccccccCCC-cc-eeCCCCCcccHhhHHHhc
Q 031028 65 IEREEECGICMETNS-KI-VLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~-~~-~~~~CgH~fc~~Ci~~w~ 99 (167)
.+.+..|.+|...+. .| ++.+|||.||..|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 456789999987744 34 667999999999997653
No 99
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.55 E-value=0.18 Score=29.94 Aligned_cols=38 Identities=24% Similarity=0.774 Sum_probs=23.5
Q ss_pred ccccccCCCc--ceeCCCCC-----cccHhhHHHhcc--cCCccccc
Q 031028 71 CGICMETNSK--IVLPNCNH-----AMCLKCYREWRI--RSQSCPFC 108 (167)
Q Consensus 71 C~IC~~~~~~--~~~~~CgH-----~fc~~Ci~~w~~--~~~~CP~C 108 (167)
|-||++...+ +...||+= ..|..|+.+|+. ...+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688866443 45666642 368999999996 44688877
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.31 E-value=0.37 Score=40.37 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=32.7
Q ss_pred CCcccccccCCC--cc--eeCCCCCcccHhhHHHhcc-cCCcccccccccc
Q 031028 68 EEECGICMETNS--KI--VLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~--~~--~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~ 113 (167)
+..|+.|++... +. .--+||...|.-|.....+ -...||-||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 345999998854 22 3346899999999765544 2468999998655
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.81 E-value=0.11 Score=47.14 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=39.0
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc---CCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~---~~~CP~Cr~~i~ 113 (167)
...+|+||......++.+.|.|.||..|+..-+.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 45689999999999999999999999998765533 468999997654
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.94 E-value=0.21 Score=39.85 Aligned_cols=47 Identities=28% Similarity=0.705 Sum_probs=33.7
Q ss_pred CCCcccccccCC-Ccc-----eeCCCCCcccHhhHHHhcccC-Cccc--ccccccc
Q 031028 67 REEECGICMETN-SKI-----VLPNCNHAMCLKCYREWRIRS-QSCP--FCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~-~~~-----~~~~CgH~fc~~Ci~~w~~~~-~~CP--~Cr~~i~ 113 (167)
.+..|++|..+. -.| +...|-|.+|.+|+.+.+... ..|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 346899998762 222 223499999999999999755 5899 6866443
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=0.24 Score=39.82 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=38.3
Q ss_pred cCCCCCcccccccCCCcce----eCCC-----CCcccHhhHHHhcccC--------CcccccccccccccCCC
Q 031028 64 DIEREEECGICMETNSKIV----LPNC-----NHAMCLKCYREWRIRS--------QSCPFCRDSLKRVNSGD 119 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~----~~~C-----gH~fc~~Ci~~w~~~~--------~~CP~Cr~~i~~~~~~~ 119 (167)
+.+.+.-|-||+....+-. .-|| .|-.|..|+.+|...+ .+||.|+.....+.+..
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 3446678999998766532 2245 3558999999998432 38999998776544433
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=0.24 Score=40.62 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=21.7
Q ss_pred CCCcccHhhHHHhccc-------------CCcccccccccc
Q 031028 86 CNHAMCLKCYREWRIR-------------SQSCPFCRDSLK 113 (167)
Q Consensus 86 CgH~fc~~Ci~~w~~~-------------~~~CP~Cr~~i~ 113 (167)
|....|.+|+-+|+.. +-.||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 4556788999998743 249999999876
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.59 E-value=0.34 Score=44.46 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=23.9
Q ss_pred eeCCCCCcccHhhHHHhcccCCcccc
Q 031028 82 VLPNCNHAMCLKCYREWRIRSQSCPF 107 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~~~~~CP~ 107 (167)
+...|||..|.+|...|+..+..||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 66789999999999999999999997
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=0.49 Score=40.39 Aligned_cols=35 Identities=31% Similarity=0.773 Sum_probs=25.6
Q ss_pred CCCcccccc-cCCCc---ceeCCCCCcccHhhHHHhccc
Q 031028 67 REEECGICM-ETNSK---IVLPNCNHAMCLKCYREWRIR 101 (167)
Q Consensus 67 ~~~~C~IC~-~~~~~---~~~~~CgH~fc~~Ci~~w~~~ 101 (167)
....|.||+ +.... .....|+|.||..|..+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 357899999 44332 135679999999999987753
No 107
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=0.67 Score=37.19 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR 101 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~ 101 (167)
...-|+.|+....+|++++=||.||.+||.+.+..
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 44568999999999999999999999999887643
No 108
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=0.3 Score=44.06 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=29.5
Q ss_pred CCCCcccccccCCC----cceeCCCCCcccHhhHHHhcccCCccc
Q 031028 66 EREEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCP 106 (167)
Q Consensus 66 ~~~~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~~~~CP 106 (167)
.....|.||...+. .|+.+-|||..|.+|+..... .+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 34567999976644 478888999999999987544 4577
No 109
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.68 E-value=0.83 Score=37.90 Aligned_cols=56 Identities=5% Similarity=-0.104 Sum_probs=42.8
Q ss_pred HHhhcccccCCCCCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCcccccccccc
Q 031028 56 EQRQYTDADIEREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 56 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
++.+.....+-....|..|-+........+|||. ||.+|.. +....+||+|.....
T Consensus 331 ~~~~~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 331 KREESPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hccccccccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 3344444555566789999888777788899998 9999987 567789999987554
No 110
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=0.72 Score=40.01 Aligned_cols=36 Identities=28% Similarity=0.759 Sum_probs=30.1
Q ss_pred CCCCcccccccCCCc-ceeCCCCCcccHhhHHHhccc
Q 031028 66 EREEECGICMETNSK-IVLPNCNHAMCLKCYREWRIR 101 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~w~~~ 101 (167)
....+|.||.+.... ...+.|||.||..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 355799999999874 777899999999999888754
No 111
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=83.44 E-value=1.1 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=19.4
Q ss_pred CcccccccCCCccee-CCCCCcccHhhHHHhccc-----CCcccccccc
Q 031028 69 EECGICMETNSKIVL-PNCNHAMCLKCYREWRIR-----SQSCPFCRDS 111 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~~-----~~~CP~Cr~~ 111 (167)
..|++.......|+. ..|.|.-|.+- ..|+.. .-.||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 568988888777744 58999966442 233321 2379999763
No 112
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=0.88 Score=33.18 Aligned_cols=61 Identities=26% Similarity=0.669 Sum_probs=32.9
Q ss_pred ccCCCCCcccccccC-CCcc---eeCCCCCcccHhhHHHhcccCC----cccccccccccccCCCceec
Q 031028 63 ADIEREEECGICMET-NSKI---VLPNCNHAMCLKCYREWRIRSQ----SCPFCRDSLKRVNSGDLWVY 123 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~-~~~~---~~~~CgH~fc~~Ci~~w~~~~~----~CP~Cr~~i~~~~~~~~~~~ 123 (167)
.....+..|.||... |.++ ...-|.-.||..|-.+...+++ .|-.|+....-+..+-.|..
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 445678899999865 4444 1112333355555544333322 67778776554444444443
No 113
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.44 E-value=2.1 Score=34.46 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=42.3
Q ss_pred CCCcccccccCCC----cceeCCCCCcccHhhHHHhcccCCcccccccccccccCCCceeccCcchhhhhh
Q 031028 67 REEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSA 133 (167)
Q Consensus 67 ~~~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~d~~ 133 (167)
..+.|+|---.++ ..++..|||+|-..-+.+.- ..+|++|.+.+. ..+..+++...+.+|.-
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~---~~dvIvlNg~~E~~dll 175 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ---EDDVIVLNGTEEDVDLL 175 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc---ccCeEeeCCCHHHHHHH
Confidence 3467887654433 34677999999988877653 678999999776 35556666555555543
No 114
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.29 E-value=1.8 Score=28.48 Aligned_cols=49 Identities=29% Similarity=0.721 Sum_probs=20.8
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCcccccccccccc
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~ 115 (167)
....|-||-+..- ++ ..-.|+-..|..|.. +.....+.||.|+......
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 3467999987743 22 334688889999998 4445678999999877754
No 115
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=80.15 E-value=1.9 Score=41.29 Aligned_cols=58 Identities=29% Similarity=0.611 Sum_probs=40.9
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCcccccccccccccCCCceeccC
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 125 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~~~~~~~~~~~ 125 (167)
....|-||-+... ++ ..-.||-..|..|.+ +....++.||.|+....+.. ...++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCcc
Confidence 4458999998743 22 334688889999997 55567899999999888554 33444443
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=0.79 Score=39.12 Aligned_cols=41 Identities=22% Similarity=0.621 Sum_probs=28.9
Q ss_pred CCcccccccCCC-----cceeCCCCCcccHhhHHHhcccCCccccc
Q 031028 68 EEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIRSQSCPFC 108 (167)
Q Consensus 68 ~~~C~IC~~~~~-----~~~~~~CgH~fc~~Ci~~w~~~~~~CP~C 108 (167)
-..|+.|..... ..+.=.|||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 356888875532 22332399999999999998877777554
No 117
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=79.25 E-value=0.36 Score=30.18 Aligned_cols=44 Identities=20% Similarity=0.473 Sum_probs=30.1
Q ss_pred cccccccccccccCCCceeccCcchhhhhhhhhHHHHHHHHHHHhhCCCcCCCccccc
Q 031028 104 SCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDP 161 (167)
Q Consensus 104 ~CP~Cr~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~~~r~~~~i~~lp~~~~~~~~~~ 161 (167)
.||.|+.++....... ...-...++.|--.+.+|+++||-..+.
T Consensus 10 aCP~~kg~L~~~~~~~--------------~L~c~~~~~aYpI~dGIPvlL~~eaR~~ 53 (60)
T COG2835 10 ACPVCKGPLVYDEEKQ--------------ELICPRCKLAYPIRDGIPVLLPDEARDL 53 (60)
T ss_pred eccCcCCcceEeccCC--------------EEEecccCceeecccCccccCchhhccc
Confidence 6999999865322211 2334456778888899999999877644
No 118
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=1.4 Score=36.32 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=42.1
Q ss_pred CCCcccccccCCCccee-CCCCCcccHhhHHHhcccCCcccccccccccccCCC
Q 031028 67 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGD 119 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~ 119 (167)
....|-+|......+.+ -.|+|.||..|...|....+.||.|+.....+..+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~aG~ 157 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLAGM 157 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCceeccC
Confidence 45678889888665533 359999999999999999999999998776555444
No 119
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=77.15 E-value=0.59 Score=38.16 Aligned_cols=45 Identities=27% Similarity=0.644 Sum_probs=22.8
Q ss_pred CCCcccccccCCCcceeCCC-----CCcccHhhHHHhcccCCcccccccc
Q 031028 67 REEECGICMETNSKIVLPNC-----NHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~C-----gH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
....|++|-....-.++..= .|.+|..|-..|......||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 44799999987554333222 4568999999999888899999764
No 120
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=76.28 E-value=5.3 Score=32.44 Aligned_cols=48 Identities=19% Similarity=0.483 Sum_probs=26.0
Q ss_pred cHhhHHHhc-ccCCcccccccccccccCCCceeccCcchhhhhhhhhHHHHHHHHHHHhhCCC
Q 031028 91 CLKCYREWR-IRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPL 152 (167)
Q Consensus 91 c~~Ci~~w~-~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~~~r~~~~i~~lp~ 152 (167)
|..|..+|- ...+.||.-+ +.. +.-.....+..+.++++..|..+-.+
T Consensus 58 HrdCFEK~HlIanQ~~prsk--~sk------------StYe~vK~~lSkkinwivqyAQnkd~ 106 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCPRSK--LSK------------STYEEVKTILSKKINWIVQYAQNKDL 106 (285)
T ss_pred hHHHHHHHHHHHcCCCCccc--ccc------------chHHHHHHHHHHHHHHHHHHHhccCC
Confidence 478999886 3567888332 211 11122333445556666666665544
No 121
>PLN02189 cellulose synthase
Probab=75.58 E-value=3 Score=39.84 Aligned_cols=50 Identities=30% Similarity=0.765 Sum_probs=37.0
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCccccccccccccc
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVN 116 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~~ 116 (167)
....|.||-+... ++ ..-.|+-..|..|.+ .....++.||.|+....+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 4458999998843 12 334588889999997 44456789999999888554
No 122
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=75.45 E-value=6.1 Score=27.85 Aligned_cols=44 Identities=25% Similarity=0.558 Sum_probs=28.8
Q ss_pred CCCcccccccCCC-----cceeCCCCCcccHhhHHHhcccC--Ccccccccc
Q 031028 67 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~~~~~CgH~fc~~Ci~~w~~~~--~~CP~Cr~~ 111 (167)
....|.+|...+. ......|+|.+|..|-.. .... -.|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 5679999987643 246678999999999654 1111 268888764
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.72 E-value=1.7 Score=40.37 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=24.3
Q ss_pred eeCCCCCcccHhhHHHhccc------CCcccccccccc
Q 031028 82 VLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 113 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~~------~~~CP~Cr~~i~ 113 (167)
..-.|+|.||..||..|..+ .-.|++|...|.
T Consensus 117 P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 117 PVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred chhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 33459999999999999854 237788887554
No 124
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=70.76 E-value=4.7 Score=38.64 Aligned_cols=58 Identities=28% Similarity=0.562 Sum_probs=40.2
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCcccccccccccccCCCceeccC
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 125 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~~~~~~~~~~~ 125 (167)
....|.||-+... ++ ..-.|+-..|..|.+ .....++.||.|+....+.. ...++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 4568999998743 22 334688889999997 44456789999999887544 33444443
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.41 E-value=1.7 Score=34.06 Aligned_cols=44 Identities=23% Similarity=0.509 Sum_probs=36.9
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
.-..|.+|....... ...+||-.++..|+...+++...||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 446899999886554 56789999999999999999999999954
No 126
>PLN02400 cellulose synthase
Probab=70.37 E-value=5 Score=38.57 Aligned_cols=57 Identities=26% Similarity=0.625 Sum_probs=40.2
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCcccccccccccccCCCceecc
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYM 124 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~~~~~~~~~~ 124 (167)
....|-||-+..- ++ ..-.|+-..|..|.+ +....++.||.|+...++.. ....+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~G 99 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEG 99 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCc
Confidence 4468999998843 22 344688889999997 44456789999999888653 3344444
No 127
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=70.32 E-value=4.1 Score=38.10 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=35.5
Q ss_pred CCCCcccccccCCC--cceeCCCCCc-----ccHhhHHHhccc--CCccccccccccc
Q 031028 66 EREEECGICMETNS--KIVLPNCNHA-----MCLKCYREWRIR--SQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~--~~~~~~CgH~-----fc~~Ci~~w~~~--~~~CP~Cr~~i~~ 114 (167)
+++..|-||..... +|..-||... .|.+|+.+|+.. .++|-.|..+++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 45578999986633 3544455432 699999999964 4699999988764
No 128
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=2 Score=35.22 Aligned_cols=36 Identities=25% Similarity=0.558 Sum_probs=28.4
Q ss_pred CCCcccccccCCCcceeCCC----CCcccHhhHHHhcccC
Q 031028 67 REEECGICMETNSKIVLPNC----NHAMCLKCYREWRIRS 102 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~C----gH~fc~~Ci~~w~~~~ 102 (167)
..+.|.+|.|.+.+.....| .|.||.-|-++-++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 44789999999888655556 7999999998877653
No 129
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=69.53 E-value=1.4 Score=36.43 Aligned_cols=45 Identities=20% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCcccccccCCCcceeC----CCC--CcccHhhHHHhcccCCcccccccc
Q 031028 67 REEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~----~Cg--H~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
....|++|-....-.++. .=| +.+|..|-..|......||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 345999999885433221 233 558999999999989999999864
No 130
>PLN02436 cellulose synthase A
Probab=69.52 E-value=6 Score=38.06 Aligned_cols=50 Identities=30% Similarity=0.745 Sum_probs=36.6
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCccccccccccccc
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVN 116 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~~ 116 (167)
....|.||-+..- ++ ..-.|+-..|..|.+ .....++.||.|+....+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 4468999998843 12 333588889999997 33456789999999887554
No 131
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.00 E-value=3.3 Score=34.46 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCcccccccC---CCcceeCCCCCcccHhhHHHhcccC---Cccccccc
Q 031028 66 EREEECGICMET---NSKIVLPNCNHAMCLKCYREWRIRS---QSCPFCRD 110 (167)
Q Consensus 66 ~~~~~C~IC~~~---~~~~~~~~CgH~fc~~Ci~~w~~~~---~~CP~Cr~ 110 (167)
-.-+.|++=.+. ...|+.+.|||+.-.+-+....+.+ ..||.|-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 345788876655 3458999999999999888876543 59999943
No 132
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=68.68 E-value=1.8 Score=35.96 Aligned_cols=44 Identities=20% Similarity=0.533 Sum_probs=32.9
Q ss_pred CCCcccccccCCCccee---CCCC--CcccHhhHHHhcccCCccccccc
Q 031028 67 REEECGICMETNSKIVL---PNCN--HAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~---~~Cg--H~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
....|++|-....-.++ ..=| |.+|..|-..|......||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 46899999987543221 1233 45799999999998999999986
No 133
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=4.3 Score=37.07 Aligned_cols=46 Identities=28% Similarity=0.734 Sum_probs=36.9
Q ss_pred cccccccCCCcceeCCCCC-cccHhhHHHhcc--c----CCcccccccccccc
Q 031028 70 ECGICMETNSKIVLPNCNH-AMCLKCYREWRI--R----SQSCPFCRDSLKRV 115 (167)
Q Consensus 70 ~C~IC~~~~~~~~~~~CgH-~fc~~Ci~~w~~--~----~~~CP~Cr~~i~~~ 115 (167)
.|+||-....-...-+||| ..|..|..+... . ++.||+||..+...
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999998888888889999 699999987652 3 46889999966543
No 134
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=65.25 E-value=0.72 Score=29.78 Aligned_cols=43 Identities=21% Similarity=0.541 Sum_probs=23.8
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 116 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~ 116 (167)
..|+.|........ ||.+|..|-... .....||-|.+++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHHHHH
Confidence 46899987633221 788888887653 44568999999887543
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=62.51 E-value=4.2 Score=25.91 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=8.7
Q ss_pred cccHhhHHHhcc
Q 031028 89 AMCLKCYREWRI 100 (167)
Q Consensus 89 ~fc~~Ci~~w~~ 100 (167)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 136
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=62.50 E-value=1.6 Score=21.80 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=5.4
Q ss_pred ccCCccccccc
Q 031028 100 IRSQSCPFCRD 110 (167)
Q Consensus 100 ~~~~~CP~Cr~ 110 (167)
...+.||.|..
T Consensus 11 ~~~~fC~~CG~ 21 (23)
T PF13240_consen 11 DDAKFCPNCGT 21 (23)
T ss_pred CcCcchhhhCC
Confidence 33445555544
No 137
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.20 E-value=2.5 Score=36.10 Aligned_cols=29 Identities=38% Similarity=0.856 Sum_probs=0.0
Q ss_pred eeCCCCCcccHhhHHHhcc------cCCcccccccccc
Q 031028 82 VLPNCNHAMCLKCYREWRI------RSQSCPFCRDSLK 113 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~------~~~~CP~Cr~~i~ 113 (167)
+.++|||++... .|-. ....||+||..-.
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCC
Confidence 678899987643 4643 2469999998654
No 138
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.55 E-value=2.1 Score=36.59 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=38.4
Q ss_pred CCCcccccccCCC----cceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|+||.+... ....+-|||.++..|+.+|+.....||.|+..+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3467999987744 3355679999999999999988889999998775
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=58.78 E-value=3.6 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=17.3
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~ 99 (167)
+...|.+|...|.- -..-.||+.||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 44679999988753 2445799999999986543
No 140
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.39 E-value=10 Score=31.73 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=32.3
Q ss_pred CCCcccccccCCC-------------------cceeCCCCCcccHhhHHHhccc---------CCcccccccccc
Q 031028 67 REEECGICMETNS-------------------KIVLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~-------------------~~~~~~CgH~fc~~Ci~~w~~~---------~~~CP~Cr~~i~ 113 (167)
...+|++|+.... .-...||||.--.+=...|.+. +..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3578999986522 0134589997666777788643 359999987654
No 141
>PRK04023 DNA polymerase II large subunit; Validated
Probab=56.77 E-value=12 Score=36.02 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=33.3
Q ss_pred CCCcccccccCCCcceeCCCCC-----cccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNH-----AMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH-----~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|+-|-..........||. .||..| .+......||.|.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 4468999988866667778985 499999 34444567999988665
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=56.35 E-value=9.3 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.747 Sum_probs=14.8
Q ss_pred eCCCCCcccHhhHHHhcccCCcccccc
Q 031028 83 LPNCNHAMCLKCYREWRIRSQSCPFCR 109 (167)
Q Consensus 83 ~~~CgH~fc~~Ci~~w~~~~~~CP~Cr 109 (167)
...|++.||..|=.-.-..-..||-|.
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcChhhhccccCCcCCC
Confidence 357999999999544334446899884
No 143
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=56.20 E-value=9.3 Score=31.90 Aligned_cols=46 Identities=28% Similarity=0.637 Sum_probs=36.0
Q ss_pred CcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 69 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 69 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..|+||.+.... ..-.+||+..|..|+......+..||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 579999987521 2334689999999998888888999999976653
No 144
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=55.77 E-value=2.3 Score=25.95 Aligned_cols=15 Identities=27% Similarity=1.181 Sum_probs=13.3
Q ss_pred CCCCcccHhhHHHhc
Q 031028 85 NCNHAMCLKCYREWR 99 (167)
Q Consensus 85 ~CgH~fc~~Ci~~w~ 99 (167)
.|||.||..|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 799999999988884
No 145
>PRK11827 hypothetical protein; Provisional
Probab=55.53 E-value=1.1 Score=28.17 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=27.4
Q ss_pred cCCcccccccccccccCCCceeccCcchhhhhhhhhHHHHHHHHHHHhhCCCcCCCccc
Q 031028 101 RSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLF 159 (167)
Q Consensus 101 ~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~~~r~~~~i~~lp~~~~~~~~ 159 (167)
.--.||.|+.++....... ...-+..+..|---+++|++++|...
T Consensus 7 eILaCP~ckg~L~~~~~~~--------------~Lic~~~~laYPI~dgIPVlL~deAr 51 (60)
T PRK11827 7 EIIACPVCNGKLWYNQEKQ--------------ELICKLDNLAFPLRDGIPVLLETEAR 51 (60)
T ss_pred hheECCCCCCcCeEcCCCC--------------eEECCccCeeccccCCccccCHHHhc
Confidence 3357999998876321111 11122345567777889998887665
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.10 E-value=8.9 Score=35.52 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=29.9
Q ss_pred cccccccCCCcc--eeCCCCCcccHhhHHHhcccCCcccc--ccc
Q 031028 70 ECGICMETNSKI--VLPNCNHAMCLKCYREWRIRSQSCPF--CRD 110 (167)
Q Consensus 70 ~C~IC~~~~~~~--~~~~CgH~fc~~Ci~~w~~~~~~CP~--Cr~ 110 (167)
.|.+|-...... -..-|||.-|.+|+..|+.....||. |..
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 566665543322 33469999999999999999888887 644
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=55.02 E-value=4 Score=34.94 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=0.0
Q ss_pred CCcccccccCCC--------------c-----ceeCCCCCcccHhhHHHhccc---------CCcccccccccc
Q 031028 68 EEECGICMETNS--------------K-----IVLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~--------------~-----~~~~~CgH~fc~~Ci~~w~~~---------~~~CP~Cr~~i~ 113 (167)
..+|++|..... + -..-||||.--.+....|.+. +..||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 578999996522 0 134489998878888899643 259999988776
No 148
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=53.03 E-value=8 Score=23.19 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=20.4
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcc--cCCccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRI--RSQSCPFCRD 110 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~--~~~~CP~Cr~ 110 (167)
.+.|+.|.+.+....+ ...|...-.. ....||+|..
T Consensus 2 ~f~CP~C~~~~~~~~L-------~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL-------VEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH-------HHHHHhHCcCCCCCccCCCchh
Confidence 4679999885443322 2333333322 2358999975
No 149
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.55 E-value=10 Score=29.34 Aligned_cols=39 Identities=28% Similarity=0.707 Sum_probs=27.3
Q ss_pred CCCcccccccC-CCc-------ceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 67 REEECGICMET-NSK-------IVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~-~~~-------~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
..+.|.+|.+. ..- .....|+..||..|..+ ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 45788888754 111 24457999999999652 67999964
No 150
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=52.13 E-value=6.4 Score=23.65 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=5.9
Q ss_pred Ccccccccccc
Q 031028 103 QSCPFCRDSLK 113 (167)
Q Consensus 103 ~~CP~Cr~~i~ 113 (167)
..||+|..++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 48999999887
No 151
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=51.91 E-value=1.4e+02 Score=24.73 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCcceeC----CCCC--cccHhhHHHhcccCCcccccccc
Q 031028 66 EREEECGICMETNSKIVLP----NCNH--AMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~----~CgH--~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
+....|++|-......++. .-|- .-|.-|...|.....+|--|...
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc
Confidence 4556899999885543222 1222 25999999999888889888653
No 152
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.27 E-value=14 Score=26.11 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=30.5
Q ss_pred CcccccccCCCcc--------------eeCCCCCcccHhhHHHhcccCCcccccc
Q 031028 69 EECGICMETNSKI--------------VLPNCNHAMCLKCYREWRIRSQSCPFCR 109 (167)
Q Consensus 69 ~~C~IC~~~~~~~--------------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr 109 (167)
..|--|...+..+ ....|++.||.+|=.-+-..-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588888766532 2568999999999766666667899985
No 153
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=50.25 E-value=14 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=17.7
Q ss_pred CCcccHhhHHHhccc---------CCccccccc
Q 031028 87 NHAMCLKCYREWRIR---------SQSCPFCRD 110 (167)
Q Consensus 87 gH~fc~~Ci~~w~~~---------~~~CP~Cr~ 110 (167)
.=.||..|+..+... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 566999999766532 237999986
No 155
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=48.42 E-value=5.5 Score=22.80 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=16.9
Q ss_pred eCCCCCcccHhhHHHhcccCCccccccc-ccc
Q 031028 83 LPNCNHAMCLKCYREWRIRSQSCPFCRD-SLK 113 (167)
Q Consensus 83 ~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~-~i~ 113 (167)
...|||.|-..--..= .....||.|.. .+.
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGSTEVR 38 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCCCceE
Confidence 3568888754221110 23458999987 444
No 156
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=14 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.540 Sum_probs=30.7
Q ss_pred cccCCCCCcccccccCCC-------cceeCCCCCcccHhhHHHhcccCCccccc
Q 031028 62 DADIEREEECGICMETNS-------KIVLPNCNHAMCLKCYREWRIRSQSCPFC 108 (167)
Q Consensus 62 ~~~~~~~~~C~IC~~~~~-------~~~~~~CgH~fc~~Ci~~w~~~~~~CP~C 108 (167)
.+....+..|.-|.+... ..+...|||.||..|+..-..+.+ |-.|
T Consensus 778 Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 778 GVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred CeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 333445568999998744 346678999999999975443333 4444
No 157
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=47.91 E-value=15 Score=21.82 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=21.5
Q ss_pred CcccccccCCCc----ceeCCCCCcccHhhHHHhc
Q 031028 69 EECGICMETNSK----IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 69 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~ 99 (167)
..|.+|...+.. .....||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 457888765442 3445799999999986543
No 158
>PLN02195 cellulose synthase A
Probab=46.31 E-value=20 Score=34.38 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=34.3
Q ss_pred CCCcccccccCCC-----cc--eeCCCCCcccHhhHH-HhcccCCcccccccccc
Q 031028 67 REEECGICMETNS-----KI--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~ 113 (167)
....|.||-+... ++ ..-.|+-..|..|.+ +-...++.||.|+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3457999987633 22 344689999999997 33456789999998776
No 159
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=44.67 E-value=18 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=19.1
Q ss_pred CcccHhhHHHhcccCCcccccccccc
Q 031028 88 HAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 88 H~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..||..|....+ +..||-|...+.
T Consensus 29 CTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHh--cCcCcCCCCccc
Confidence 359999999876 467999987665
No 160
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=44.56 E-value=7 Score=35.20 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=26.6
Q ss_pred CCCcccccccCC-Cc-------ceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 67 REEECGICMETN-SK-------IVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~-~~-------~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
..+.|.+|.... .- .....||+.||..|... .+..||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 446778884331 11 23456999999999544 4555999954
No 161
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=42.92 E-value=7.5 Score=20.74 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=11.2
Q ss_pred CCcccHhhHHHhccc----CCccccccc
Q 031028 87 NHAMCLKCYREWRIR----SQSCPFCRD 110 (167)
Q Consensus 87 gH~fc~~Ci~~w~~~----~~~CP~Cr~ 110 (167)
.|.||..|-.+-... ...||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 366777776654422 247777754
No 162
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=42.67 E-value=18 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.813 Sum_probs=20.0
Q ss_pred ccHhhHHHhcccCCccccccccccc
Q 031028 90 MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 90 fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.|.+|..+.-.....||+|+....+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcccc
Confidence 3888988887778899999876543
No 163
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.65 E-value=12 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=15.7
Q ss_pred cccccCCCcceeCCCCCcccHh
Q 031028 72 GICMETNSKIVLPNCNHAMCLK 93 (167)
Q Consensus 72 ~IC~~~~~~~~~~~CgH~fc~~ 93 (167)
-||.+.-.....-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3677665555666799999963
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.52 E-value=20 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.709 Sum_probs=20.4
Q ss_pred ccHhhHHHhcccCCccccccccccc
Q 031028 90 MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 90 fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
-|.+|....-.....||+|.+..-+
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccccc
Confidence 3999999888888999999875543
No 165
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.51 E-value=32 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=23.1
Q ss_pred CCcccccccCCC--c--ceeCCCCCcccHhhHHH
Q 031028 68 EEECGICMETNS--K--IVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 68 ~~~C~IC~~~~~--~--~~~~~CgH~fc~~Ci~~ 97 (167)
...|.+|-+.+. + .+...||-.+|+.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999998884 2 35678999999999543
No 166
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=39.49 E-value=20 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.637 Sum_probs=34.1
Q ss_pred CCcccccccCCCc----ceeCCCC-----CcccHhhHHHhcc--cCCcccccccccc
Q 031028 68 EEECGICMETNSK----IVLPNCN-----HAMCLKCYREWRI--RSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~----~~~~~Cg-----H~fc~~Ci~~w~~--~~~~CP~Cr~~i~ 113 (167)
...|-||...... +...+|. +..|..|+..|+. ....|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4679999986542 4566664 2368999999997 5679999988655
No 167
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=38.96 E-value=23 Score=20.43 Aligned_cols=22 Identities=18% Similarity=0.538 Sum_probs=15.3
Q ss_pred ccccccCCCcceeCCCCCcccH
Q 031028 71 CGICMETNSKIVLPNCNHAMCL 92 (167)
Q Consensus 71 C~IC~~~~~~~~~~~CgH~fc~ 92 (167)
|..|......-+.+.|+|.+|.
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~ 23 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCG 23 (50)
T ss_pred cccCCCcCCeEEecCCCCcccC
Confidence 6677755544566778888884
No 168
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=38.69 E-value=24 Score=18.61 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=17.7
Q ss_pred ccccccCCCc--ceeCCCCCcccHhhHHHhcccCCccccccccc
Q 031028 71 CGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112 (167)
Q Consensus 71 C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i 112 (167)
|..|...+.. .....=+..||..| ..|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 6666665544 23333355555555 3466666544
No 169
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=38.28 E-value=4.3 Score=24.61 Aligned_cols=16 Identities=38% Similarity=1.261 Sum_probs=13.2
Q ss_pred CCCCCcccHhhHHHhc
Q 031028 84 PNCNHAMCLKCYREWR 99 (167)
Q Consensus 84 ~~CgH~fc~~Ci~~w~ 99 (167)
..|++.||..|-..|-
T Consensus 44 ~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 44 PSCGTEFCFKCGEPWH 59 (64)
T ss_dssp TSCCSEECSSSTSESC
T ss_pred CCCCCcCccccCcccC
Confidence 4599999999988873
No 170
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=37.34 E-value=25 Score=29.54 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=29.8
Q ss_pred CCCcccccccCCCc---ceeCCCCCcccHhhHHHhcccCCccccccc
Q 031028 67 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~ 110 (167)
....|-.|.+.... -....|.|.||..|=.-.-..-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 33459899555332 255679999999996544444468999963
No 171
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=12 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=17.1
Q ss_pred CCCcccccccCCCc---ceeCCCCCccc
Q 031028 67 REEECGICMETNSK---IVLPNCNHAMC 91 (167)
Q Consensus 67 ~~~~C~IC~~~~~~---~~~~~CgH~fc 91 (167)
+.-+|.||+|++.. ...+||--+||
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEee
Confidence 44689999988764 35567766555
No 172
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=17 Score=32.41 Aligned_cols=44 Identities=25% Similarity=0.757 Sum_probs=34.4
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....|.+|.+.. ....++|. +..|+..|...+..||.|+.....
T Consensus 478 ~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 478 PNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred ccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 446788998777 55566777 578888999999999999887653
No 173
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.58 E-value=21 Score=28.82 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=30.0
Q ss_pred CcccccccCCCcc-eeCCCCCcccHhhHHHhccc--CCccccccc
Q 031028 69 EECGICMETNSKI-VLPNCNHAMCLKCYREWRIR--SQSCPFCRD 110 (167)
Q Consensus 69 ~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~--~~~CP~Cr~ 110 (167)
..|+|=...+..| +...|||.|=..-+...+.. .-.||+-..
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 5787755554444 55789999999999888765 447777433
No 174
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.55 E-value=16 Score=34.37 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=31.6
Q ss_pred CCCcccccccCCCc--ceeCCCCCcccHhhHHHhcc---c---CCccccccc
Q 031028 67 REEECGICMETNSK--IVLPNCNHAMCLKCYREWRI---R---SQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~~---~---~~~CP~Cr~ 110 (167)
....|..|.....+ -+...||+.+|..|+..|.- . ...|++|+.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 34578889876554 47788999999999999941 1 136666664
No 175
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.35 E-value=9.4 Score=19.65 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=3.1
Q ss_pred ccccccC
Q 031028 71 CGICMET 77 (167)
Q Consensus 71 C~IC~~~ 77 (167)
|+-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4444443
No 176
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.17 E-value=18 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.6
Q ss_pred cccHhhHHHhcc
Q 031028 89 AMCLKCYREWRI 100 (167)
Q Consensus 89 ~fc~~Ci~~w~~ 100 (167)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 177
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.05 E-value=21 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.424 Sum_probs=27.3
Q ss_pred CcccccccCCC----cceeCCCCCcccHhhHHHhcccCCcccccc
Q 031028 69 EECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCR 109 (167)
Q Consensus 69 ~~C~IC~~~~~----~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr 109 (167)
..|-+|...-. -+.++.|+..||..|- ..-.+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~---~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACS---LDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhh---hhhhccCcccC
Confidence 47888875522 3566789999999994 44456799994
No 178
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=33.32 E-value=25 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=12.2
Q ss_pred CCCCcccHhhHHHhcccCCccccc
Q 031028 85 NCNHAMCLKCYREWRIRSQSCPFC 108 (167)
Q Consensus 85 ~CgH~fc~~Ci~~w~~~~~~CP~C 108 (167)
.|||.|=.. +.........||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 467765322 12222456788887
No 179
>PF13063 DUF3925: Protein of unknown function (DUF3925)
Probab=32.49 E-value=28 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHhHHHHHHhhccCchH
Q 031028 12 TSANTHLQAIIYPSLLQLQRGVTDTE 37 (167)
Q Consensus 12 ~~si~~f~~~i~p~l~~l~~~~~~~~ 37 (167)
++|.++||-+++-.+..+.+|+.|..
T Consensus 8 ~isnrefyfvlymmll~v~gw~idvn 33 (66)
T PF13063_consen 8 MISNREFYFVLYMMLLFVAGWVIDVN 33 (66)
T ss_pred hhcccchHHHHHHHHHHHhhheEecc
Confidence 46899999999999999999998875
No 180
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=32.30 E-value=11 Score=19.21 Aligned_cols=7 Identities=43% Similarity=1.198 Sum_probs=3.0
Q ss_pred Ccccccc
Q 031028 103 QSCPFCR 109 (167)
Q Consensus 103 ~~CP~Cr 109 (167)
+.||.|-
T Consensus 17 ~fC~~CG 23 (26)
T PF13248_consen 17 KFCPNCG 23 (26)
T ss_pred ccChhhC
Confidence 3444443
No 181
>PF14353 CpXC: CpXC protein
Probab=31.95 E-value=36 Score=23.98 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=22.8
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhccc---CCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~---~~~CP~Cr~~i~ 113 (167)
.+|+-|...+...+.+.-.-..-..-....+.+ ..+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 457777666544322222222222333344432 249999998765
No 182
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.66 E-value=42 Score=26.24 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=18.1
Q ss_pred cccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccc
Q 031028 70 ECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 70 ~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
.|.+|-...... ....|..|...+......||.|..+
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 477776543211 1235666665543223456666544
No 183
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.42 E-value=33 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=19.6
Q ss_pred CCcccHhhHHHhcccCCcccccccccc
Q 031028 87 NHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 87 gH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.|.||..|...-+ +..||-|-..+.
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhh
Confidence 5789999998654 467999987665
No 184
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.08 E-value=36 Score=33.59 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=30.1
Q ss_pred CCcccccccCCCcceeCCCCCcc-----cHhhHHHhccc---CCcccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAM-----CLKCYREWRIR---SQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~f-----c~~Ci~~w~~~---~~~CP~Cr~~i~ 113 (167)
...|+-|-......+...||+.. |..|-...-.. ...||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 47899998775556777788653 77775543211 237888877655
No 185
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=28.48 E-value=34 Score=17.76 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=6.0
Q ss_pred ccccccccccc
Q 031028 104 SCPFCRDSLKR 114 (167)
Q Consensus 104 ~CP~Cr~~i~~ 114 (167)
.||.|...+..
T Consensus 1 ~CP~C~s~l~~ 11 (28)
T PF03119_consen 1 TCPVCGSKLVR 11 (28)
T ss_dssp B-TTT--BEEE
T ss_pred CcCCCCCEeEc
Confidence 48999887764
No 186
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=29 Score=32.13 Aligned_cols=47 Identities=26% Similarity=0.566 Sum_probs=32.8
Q ss_pred CCCcccccccCCCcc----------eeCCCCCcc--------------------cHhhHHHhcc--------cCCccccc
Q 031028 67 REEECGICMETNSKI----------VLPNCNHAM--------------------CLKCYREWRI--------RSQSCPFC 108 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~----------~~~~CgH~f--------------------c~~Ci~~w~~--------~~~~CP~C 108 (167)
+-..|.-|++.+.+| ..|+||..| |..|-..+.. +...||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 446899998775542 567888877 9999887642 12489999
Q ss_pred ccccc
Q 031028 109 RDSLK 113 (167)
Q Consensus 109 r~~i~ 113 (167)
.-.+.
T Consensus 180 GP~~~ 184 (750)
T COG0068 180 GPHLF 184 (750)
T ss_pred CCCeE
Confidence 65444
No 187
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.33 E-value=29 Score=23.51 Aligned_cols=37 Identities=19% Similarity=0.562 Sum_probs=26.7
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...|.||-..... =||.||..|... ...|.+|-..+.
T Consensus 44 ~~~C~~CK~~v~q-----~g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----PGAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred Ccccccccccccc-----CCCccChhhhcc----cCcccccCCeec
Confidence 4579888766333 377899999643 568999988764
No 188
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.89 E-value=40 Score=18.03 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=7.2
Q ss_pred CCcccccccc
Q 031028 102 SQSCPFCRDS 111 (167)
Q Consensus 102 ~~~CP~Cr~~ 111 (167)
...||.|..+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4589999763
No 189
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=25.75 E-value=60 Score=19.03 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=22.3
Q ss_pred cccccccCCCcceeCCCCCcccHhhHHHhcc
Q 031028 70 ECGICMETNSKIVLPNCNHAMCLKCYREWRI 100 (167)
Q Consensus 70 ~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~ 100 (167)
.|.||-....+++.. .|...|..|-....+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fIC~~CE~~iv~ 30 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFICSDCEKEIVN 30 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEehHHHHHHhcc
Confidence 388888887777666 778788888766544
No 190
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.20 E-value=19 Score=30.12 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCCcccccccCCCcceeCCCCCc-ccHhhHHHh-cccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHA-MCLKCYREW-RIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w-~~~~~~CP~Cr~~i~ 113 (167)
....|.+|++........+|+|. ||..|...- .++...|++|...+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 34678888888666667789998 999987654 566678999987554
No 191
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.07 E-value=48 Score=23.40 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=13.8
Q ss_pred HhcccCCccccccccccc
Q 031028 97 EWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 97 ~w~~~~~~CP~Cr~~i~~ 114 (167)
..+.+...|+.|+++++.
T Consensus 80 KmLGr~D~CM~C~~pLTL 97 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTL 97 (114)
T ss_pred hhhchhhccCcCCCcCcc
Confidence 445566789999999883
No 192
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=24.73 E-value=24 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=15.6
Q ss_pred CCCcccHhhHHHhccc----CCcccccccccc
Q 031028 86 CNHAMCLKCYREWRIR----SQSCPFCRDSLK 113 (167)
Q Consensus 86 CgH~fc~~Ci~~w~~~----~~~CP~Cr~~i~ 113 (167)
=.|.||..|-.+.... ...||.|+....
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~f 140 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEHF 140 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCccC
Confidence 3566666666554322 246777776543
No 193
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=24.56 E-value=40 Score=29.12 Aligned_cols=31 Identities=23% Similarity=0.702 Sum_probs=22.2
Q ss_pred CcccccccCCCc--ceeCCCCCcccHhhHHHhc
Q 031028 69 EECGICMETNSK--IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 69 ~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~ 99 (167)
..|+||+-.... -..--|.-..|..|+.+..
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheeccc
Confidence 589999876443 2334588899999986653
No 194
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.23 E-value=30 Score=25.84 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=18.5
Q ss_pred CCcccHhhHHHhcccCCccccccccccc
Q 031028 87 NHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 87 gH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.+.||.+|-.+-. ..||.|..+|..
T Consensus 27 ~~~fC~kCG~~tI---~~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTI---TSCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHH---HHCcCCCCCCCC
Confidence 3569999977654 359999988864
No 195
>PRK13908 putative recombination protein RecO; Provisional
Probab=22.75 E-value=2.3e+02 Score=22.13 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhHHHhhcccccCCCCCcccccccCCCcc
Q 031028 42 KAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKI 81 (167)
Q Consensus 42 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~ 81 (167)
++.-.+.|.+-. ..+.....+..|-+|-+...+.
T Consensus 118 KR~iie~Y~~LL------efEGRLh~~~~Cf~Ce~~i~~~ 151 (204)
T PRK13908 118 KRVIIESYAKLL------EFEGRLHKDFICFLCDEKIENE 151 (204)
T ss_pred HhHHHHHHHHHH------HhccccCCCCeEEecCCccccc
Confidence 444555666655 2333455778999999886653
No 196
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=22.39 E-value=51 Score=24.44 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.1
Q ss_pred CCCcccHhhHHHhcccC-----------Ccccccccccc
Q 031028 86 CNHAMCLKCYREWRIRS-----------QSCPFCRDSLK 113 (167)
Q Consensus 86 CgH~fc~~Ci~~w~~~~-----------~~CP~Cr~~i~ 113 (167)
+||.|= .|+..+ -+||+|...-.
T Consensus 10 ~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 678874 587543 49999987543
No 197
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=22.22 E-value=46 Score=23.45 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=11.7
Q ss_pred ccccCCCcceeCCCCCcccH
Q 031028 73 ICMETNSKIVLPNCNHAMCL 92 (167)
Q Consensus 73 IC~~~~~~~~~~~CgH~fc~ 92 (167)
||.... ..+.-.|||.||.
T Consensus 17 i~~~~~-k~vkc~CGh~f~d 35 (112)
T PF08882_consen 17 IVQKKD-KVVKCDCGHEFCD 35 (112)
T ss_pred EEEecC-ceeeccCCCeecC
Confidence 444433 2444579999996
No 198
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=22.19 E-value=69 Score=17.58 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=20.5
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHH
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~ 97 (167)
...|..+.+.....+...|+-.+|..|...
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCC
Confidence 345777766555566778888899988754
No 199
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.57 E-value=37 Score=24.56 Aligned_cols=22 Identities=36% Similarity=0.872 Sum_probs=14.5
Q ss_pred cccHhhHHHhcccCCcccccccccc
Q 031028 89 AMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 89 ~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.||.+|-..-. ..||.|..+|.
T Consensus 29 afcskcgeati---~qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIR 50 (160)
T ss_pred HHHhhhchHHH---hcCCccCCccc
Confidence 37777765433 34888887765
No 200
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.49 E-value=49 Score=18.21 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=4.0
Q ss_pred cccccccC
Q 031028 70 ECGICMET 77 (167)
Q Consensus 70 ~C~IC~~~ 77 (167)
+|+-|...
T Consensus 4 ~CP~C~~~ 11 (37)
T PF13719_consen 4 TCPNCQTR 11 (37)
T ss_pred ECCCCCce
Confidence 45555544
No 201
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.28 E-value=40 Score=17.12 Aligned_cols=9 Identities=33% Similarity=1.087 Sum_probs=7.0
Q ss_pred ccccccccc
Q 031028 104 SCPFCRDSL 112 (167)
Q Consensus 104 ~CP~Cr~~i 112 (167)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 599997765
No 202
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=1.4e+02 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCCcccccccCCCc------ceeCCCCCcccHhhHHHhc
Q 031028 67 REEECGICMETNSK------IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 67 ~~~~C~IC~~~~~~------~~~~~CgH~fc~~Ci~~w~ 99 (167)
...+|+-|.-.... -..+.|||.||.-|.....
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 44679888866442 3678899999998876543
No 203
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.06 E-value=72 Score=17.85 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=4.5
Q ss_pred CCCcccH
Q 031028 86 CNHAMCL 92 (167)
Q Consensus 86 CgH~fc~ 92 (167)
|+..||.
T Consensus 18 C~~~FC~ 24 (39)
T smart00154 18 CGNLFCG 24 (39)
T ss_pred cCCcccc
Confidence 6666664
No 204
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.64 E-value=33 Score=26.37 Aligned_cols=56 Identities=23% Similarity=0.592 Sum_probs=34.3
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccccccCCCceeccCcchhhh
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIID 131 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~d 131 (167)
...|.-|....... --|..|..|... .+.|..|-+....+.....+..+...+.++
T Consensus 67 akkC~kC~~r~Vk~----aYH~~Cr~CA~e----~~vCAKC~ks~~~i~i~d~~p~~~E~~~l~ 122 (227)
T KOG3241|consen 67 AKKCQKCTKRNVKQ----AYHKLCRGCAKE----QKVCAKCCKSVDQILIRDIYPVEAEQKLLD 122 (227)
T ss_pred hHHHHHHHHHHHHH----HHHHhcccHHHH----HHHHHHHhccHHHhhhcCCCCCcHHHHHHH
Confidence 34566665442221 236677777654 356888888777777777666665555444
Done!