Query 031028
Match_columns 167
No_of_seqs 197 out of 1831
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 12:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.5 9.8E-15 3.4E-19 93.6 2.9 51 64-114 6-63 (71)
2 2d8t_A Dactylidin, ring finger 99.5 3.4E-14 1.2E-18 91.4 3.7 50 65-114 12-61 (71)
3 4ayc_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 102.9 4.0 48 67-114 52-99 (138)
4 2djb_A Polycomb group ring fin 99.5 5.6E-14 1.9E-18 90.6 4.5 51 64-114 11-62 (72)
5 1t1h_A Gspef-atpub14, armadill 99.4 9.8E-14 3.3E-18 90.6 5.0 50 64-113 4-54 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 88.4 4.8 53 65-117 11-66 (69)
7 1iym_A EL5; ring-H2 finger, ub 99.4 7.6E-14 2.6E-18 85.2 3.8 48 66-113 3-54 (55)
8 2csy_A Zinc finger protein 183 99.4 8.3E-14 2.8E-18 91.8 4.2 49 65-113 12-60 (81)
9 2ea6_A Ring finger protein 4; 99.4 4.4E-14 1.5E-18 89.8 2.4 50 64-113 11-67 (69)
10 2ysl_A Tripartite motif-contai 99.4 1.9E-13 6.4E-18 88.1 4.7 50 64-113 16-68 (73)
11 2ecy_A TNF receptor-associated 99.4 1E-13 3.6E-18 87.8 3.4 50 64-113 11-61 (66)
12 1chc_A Equine herpes virus-1 r 99.4 1.3E-13 4.5E-18 87.7 3.8 49 67-115 4-53 (68)
13 2egp_A Tripartite motif-contai 99.4 9.8E-14 3.4E-18 90.6 3.0 51 64-114 8-65 (79)
14 2yur_A Retinoblastoma-binding 99.4 1.4E-13 4.7E-18 89.4 3.5 50 64-113 11-63 (74)
15 2xeu_A Ring finger protein 4; 99.4 4.4E-14 1.5E-18 88.6 1.1 48 67-114 2-56 (64)
16 2ecw_A Tripartite motif-contai 99.4 3.5E-13 1.2E-17 88.8 5.5 50 65-114 16-71 (85)
17 2ecm_A Ring finger and CHY zin 99.4 1.4E-13 4.7E-18 83.9 3.1 47 67-113 4-54 (55)
18 2ecn_A Ring finger protein 141 99.4 1.9E-13 6.5E-18 87.5 3.6 49 65-114 12-60 (70)
19 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4.2E-18 89.6 2.2 49 65-113 20-71 (75)
20 3lrq_A E3 ubiquitin-protein li 99.4 1.4E-13 4.9E-18 94.4 2.6 47 67-113 21-69 (100)
21 2ct2_A Tripartite motif protei 99.4 5.3E-13 1.8E-17 88.8 5.2 52 63-114 10-68 (88)
22 2ect_A Ring finger protein 126 99.4 3.5E-13 1.2E-17 88.0 4.2 51 64-114 11-64 (78)
23 2ckl_A Polycomb group ring fin 99.4 1.4E-13 4.7E-18 95.5 2.2 50 65-114 12-62 (108)
24 2l0b_A E3 ubiquitin-protein li 99.4 2.3E-13 7.9E-18 91.8 3.1 49 65-113 37-88 (91)
25 3ztg_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 91.0 3.5 51 63-113 8-61 (92)
26 2ep4_A Ring finger protein 24; 99.4 3E-13 1E-17 87.5 3.4 52 64-115 11-65 (74)
27 2ecv_A Tripartite motif-contai 99.4 6.3E-13 2.1E-17 87.6 4.9 51 64-114 15-71 (85)
28 2ysj_A Tripartite motif-contai 99.3 7.8E-13 2.7E-17 82.9 4.3 45 64-108 16-63 (63)
29 2ecl_A Ring-box protein 2; RNF 99.3 6E-13 2E-17 87.9 3.8 48 67-114 14-76 (81)
30 2y43_A E3 ubiquitin-protein li 99.3 2.2E-12 7.5E-17 88.0 6.3 48 67-114 21-69 (99)
31 1v87_A Deltex protein 2; ring- 99.3 9E-13 3.1E-17 92.0 4.2 48 67-114 24-94 (114)
32 3fl2_A E3 ubiquitin-protein li 99.3 7E-13 2.4E-17 94.1 3.6 49 66-114 50-99 (124)
33 2ecj_A Tripartite motif-contai 99.3 1.5E-12 5.1E-17 80.0 4.6 45 64-108 11-58 (58)
34 2kr4_A Ubiquitin conjugation f 99.3 1.8E-12 6E-17 86.5 3.9 49 65-113 11-59 (85)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 8.4E-13 2.9E-17 93.8 2.1 50 66-115 5-61 (133)
36 3l11_A E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 93.3 1.0 49 66-114 13-62 (115)
37 3hct_A TNF receptor-associated 99.3 1.8E-12 6.3E-17 91.2 3.0 51 64-114 14-65 (118)
38 1g25_A CDK-activating kinase a 99.3 1.6E-12 5.5E-17 82.0 2.4 48 67-114 2-55 (65)
39 2kre_A Ubiquitin conjugation f 99.3 2.9E-12 9.8E-17 88.1 3.8 49 65-113 26-74 (100)
40 1jm7_A BRCA1, breast cancer ty 99.3 2.5E-12 8.6E-17 89.2 3.4 47 68-114 21-70 (112)
41 3dpl_R Ring-box protein 1; ubi 99.2 4.1E-12 1.4E-16 88.2 4.1 47 67-113 36-100 (106)
42 1z6u_A NP95-like ring finger p 99.2 3.2E-12 1.1E-16 93.9 3.6 48 67-114 77-125 (150)
43 1wgm_A Ubiquitin conjugation f 99.2 6.2E-12 2.1E-16 86.1 4.6 49 65-113 19-68 (98)
44 3knv_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 92.9 3.4 51 63-113 26-77 (141)
45 2vje_A E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 80.8 2.0 49 66-114 6-57 (64)
46 1rmd_A RAG1; V(D)J recombinati 99.2 6.2E-12 2.1E-16 88.1 3.3 48 67-114 22-70 (116)
47 2ckl_B Ubiquitin ligase protei 99.2 3.1E-12 1.1E-16 94.9 1.7 47 67-113 53-101 (165)
48 1e4u_A Transcriptional repress 99.2 3.2E-11 1.1E-15 79.2 5.7 51 64-114 7-62 (78)
49 1bor_A Transcription factor PM 99.2 8.4E-12 2.9E-16 76.7 2.7 46 66-114 4-49 (56)
50 1jm7_B BARD1, BRCA1-associated 99.2 7.4E-12 2.5E-16 88.0 2.0 45 67-113 21-66 (117)
51 2vje_B MDM4 protein; proto-onc 99.1 9.6E-12 3.3E-16 78.3 1.8 48 67-114 6-56 (63)
52 4ic3_A E3 ubiquitin-protein li 99.1 1E-11 3.4E-16 80.6 1.7 44 67-114 23-67 (74)
53 4ap4_A E3 ubiquitin ligase RNF 99.1 8.1E-12 2.8E-16 88.6 0.8 49 66-114 70-125 (133)
54 2y1n_A E3 ubiquitin-protein li 99.1 2.9E-11 9.9E-16 100.8 3.8 48 67-114 331-379 (389)
55 2c2l_A CHIP, carboxy terminus 99.1 5.3E-11 1.8E-15 94.2 4.9 50 64-113 204-254 (281)
56 3hcs_A TNF receptor-associated 99.1 4.4E-11 1.5E-15 89.0 2.8 51 64-114 14-65 (170)
57 4a0k_B E3 ubiquitin-protein li 99.1 1.9E-11 6.3E-16 86.3 0.2 47 67-113 47-111 (117)
58 2yu4_A E3 SUMO-protein ligase 99.0 6.4E-11 2.2E-15 80.2 2.6 46 66-111 5-59 (94)
59 2f42_A STIP1 homology and U-bo 99.0 3.2E-10 1.1E-14 85.4 6.0 51 63-113 101-152 (179)
60 2ecg_A Baculoviral IAP repeat- 99.0 2.3E-10 7.9E-15 74.2 3.7 43 68-114 25-68 (75)
61 2ea5_A Cell growth regulator w 98.9 5.2E-10 1.8E-14 71.4 3.9 46 65-114 12-58 (68)
62 2d8s_A Cellular modulator of i 98.9 3.6E-10 1.2E-14 74.5 3.2 50 65-114 12-70 (80)
63 2yho_A E3 ubiquitin-protein li 98.9 2.4E-10 8.1E-15 75.1 1.3 44 68-115 18-62 (79)
64 2ct0_A Non-SMC element 1 homol 98.9 2.2E-09 7.4E-14 69.7 5.3 49 66-114 13-64 (74)
65 3htk_C E3 SUMO-protein ligase 98.8 3.1E-09 1.1E-13 84.1 3.5 48 66-113 179-231 (267)
66 3t6p_A Baculoviral IAP repeat- 98.7 2.1E-09 7E-14 88.7 1.6 44 67-114 294-338 (345)
67 2bay_A PRE-mRNA splicing facto 98.7 5E-09 1.7E-13 65.4 2.0 46 68-113 3-49 (61)
68 1wim_A KIAA0161 protein; ring 98.6 1.5E-08 5.1E-13 68.2 2.2 45 67-111 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.5E-08 8.6E-13 81.7 2.0 48 66-113 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.3E-07 7.9E-12 57.6 3.3 48 66-113 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.4 1.9E-07 6.4E-12 63.3 3.0 47 70-116 3-51 (101)
72 3nw0_A Non-structural maintena 97.6 7.1E-05 2.4E-09 58.5 5.4 48 67-114 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0018 6.1E-08 43.4 2.4 33 67-99 2-38 (101)
74 2ko5_A Ring finger protein Z; 94.2 0.042 1.5E-06 36.5 3.4 46 67-114 27-73 (99)
75 3m62_A Ubiquitin conjugation f 93.9 0.13 4.5E-06 47.3 7.1 50 64-113 887-937 (968)
76 2lri_C Autoimmune regulator; Z 90.3 0.24 8.3E-06 30.6 3.1 45 67-111 11-59 (66)
77 2cs3_A Protein C14ORF4, MY039 85.9 0.45 1.5E-05 30.7 2.3 37 65-101 12-52 (93)
78 1zbd_B Rabphilin-3A; G protein 84.8 1.8 6.3E-05 30.4 5.3 46 66-111 53-107 (134)
79 1weo_A Cellulose synthase, cat 84.8 2 6.9E-05 28.1 5.0 49 67-115 15-71 (93)
80 2l5u_A Chromodomain-helicase-D 84.7 0.85 2.9E-05 27.5 3.1 47 64-110 7-57 (61)
81 3u5n_A E3 ubiquitin-protein li 81.4 0.8 2.7E-05 34.4 2.4 46 67-112 6-55 (207)
82 1joc_A EEA1, early endosomal a 78.1 4.7 0.00016 27.8 5.3 30 68-97 69-102 (125)
83 1mm2_A MI2-beta; PHD, zinc fin 77.9 0.94 3.2E-05 27.3 1.5 46 66-111 7-56 (61)
84 3o36_A Transcription intermedi 76.8 0.85 2.9E-05 33.5 1.3 46 67-112 3-52 (184)
85 1wil_A KIAA1045 protein; ring 75.8 4.2 0.00014 26.4 4.2 33 66-98 13-47 (89)
86 2yql_A PHD finger protein 21A; 75.4 0.71 2.4E-05 27.3 0.4 45 66-110 7-55 (56)
87 2zet_C Melanophilin; complex, 74.1 5.3 0.00018 28.7 4.9 44 67-111 67-117 (153)
88 1y02_A CARP2, FYVE-ring finger 73.3 0.68 2.3E-05 32.1 -0.1 45 67-111 18-66 (120)
89 1z60_A TFIIH basal transcripti 72.0 2.8 9.7E-05 25.2 2.5 40 69-108 16-58 (59)
90 2pv0_B DNA (cytosine-5)-methyl 71.3 6.7 0.00023 32.4 5.4 44 67-110 92-147 (386)
91 1xwh_A Autoimmune regulator; P 70.9 1.2 4E-05 27.2 0.7 45 66-110 6-54 (66)
92 2lbm_A Transcriptional regulat 70.7 9.1 0.00031 27.1 5.4 46 65-110 60-116 (142)
93 3a1b_A DNA (cytosine-5)-methyl 69.8 7.8 0.00027 28.0 4.9 44 67-110 78-133 (159)
94 2jmo_A Parkin; IBR, E3 ligase, 69.1 0.61 2.1E-05 29.8 -1.0 20 85-106 55-74 (80)
95 2puy_A PHD finger protein 21A; 68.1 1.4 4.9E-05 26.2 0.6 46 67-112 4-53 (60)
96 3ql9_A Transcriptional regulat 66.6 11 0.00038 26.2 5.0 44 67-110 56-110 (129)
97 1vfy_A Phosphatidylinositol-3- 66.5 4.2 0.00014 25.2 2.6 31 67-97 10-44 (73)
98 1z2q_A LM5-1; membrane protein 66.5 3.9 0.00013 26.1 2.5 32 67-98 20-55 (84)
99 2yw8_A RUN and FYVE domain-con 65.7 3.7 0.00013 26.1 2.3 32 67-98 18-53 (82)
100 2fiy_A Protein FDHE homolog; F 65.2 0.8 2.7E-05 36.8 -1.3 46 66-111 180-231 (309)
101 2ro1_A Transcription intermedi 64.9 2.5 8.4E-05 31.3 1.4 44 68-111 2-49 (189)
102 3t7l_A Zinc finger FYVE domain 64.6 3.9 0.00013 26.5 2.2 33 67-99 19-55 (90)
103 1x4u_A Zinc finger, FYVE domai 64.2 4.2 0.00014 25.9 2.3 31 67-97 13-47 (84)
104 2gmg_A Hypothetical protein PF 64.0 2.1 7.3E-05 28.8 0.9 27 80-111 67-93 (105)
105 1fp0_A KAP-1 corepressor; PHD 63.4 3.7 0.00013 26.7 1.9 47 65-111 22-72 (88)
106 1dvp_A HRS, hepatocyte growth 63.4 3.7 0.00013 30.9 2.2 32 66-97 159-194 (220)
107 3zyq_A Hepatocyte growth facto 63.1 3.8 0.00013 31.1 2.3 32 67-98 163-198 (226)
108 1wd2_A Ariadne-1 protein homol 62.0 1.8 6E-05 26.1 0.1 34 69-102 7-48 (60)
109 1f62_A Transcription factor WS 60.9 4.7 0.00016 22.9 1.9 41 70-110 2-49 (51)
110 2a20_A Regulating synaptic mem 60.1 1.5 5.2E-05 26.5 -0.4 46 65-110 6-59 (62)
111 2ysm_A Myeloid/lymphoid or mix 59.5 4.4 0.00015 27.0 1.8 35 66-100 5-42 (111)
112 1wfk_A Zinc finger, FYVE domai 58.3 6.1 0.00021 25.5 2.3 31 67-97 8-42 (88)
113 2k16_A Transcription initiatio 54.7 4.9 0.00017 24.8 1.3 47 67-113 17-70 (75)
114 3fyb_A Protein of unknown func 53.9 4.6 0.00016 26.9 1.1 12 89-100 41-52 (104)
115 3i2d_A E3 SUMO-protein ligase 53.2 11 0.00037 31.0 3.5 46 68-113 249-299 (371)
116 2o35_A Hypothetical protein DU 53.0 5 0.00017 26.7 1.2 12 89-100 42-53 (105)
117 4fo9_A E3 SUMO-protein ligase 52.9 11 0.00038 30.8 3.5 46 68-113 215-265 (360)
118 1m3v_A FLIN4, fusion of the LI 51.6 6.5 0.00022 26.5 1.7 46 69-114 33-81 (122)
119 2l43_A N-teminal domain from h 51.3 8.5 0.00029 24.8 2.1 48 65-112 22-76 (88)
120 2d8v_A Zinc finger FYVE domain 50.7 9.8 0.00033 23.4 2.2 32 66-98 6-38 (67)
121 2e6r_A Jumonji/ARID domain-con 46.6 3 0.0001 27.2 -0.7 49 63-111 11-66 (92)
122 2ct7_A Ring finger protein 31; 45.2 1.9 6.4E-05 27.7 -1.9 26 83-108 46-73 (86)
123 2ku3_A Bromodomain-containing 43.6 12 0.0004 23.1 1.8 46 65-110 13-65 (71)
124 1we9_A PHD finger family prote 43.0 5.5 0.00019 23.7 0.2 44 67-110 5-57 (64)
125 2xjy_A Rhombotin-2; oncoprotei 42.0 13 0.00043 25.1 1.9 47 67-113 28-77 (131)
126 2lv9_A Histone-lysine N-methyl 39.8 10 0.00034 24.9 1.1 43 67-110 27-75 (98)
127 1x62_A C-terminal LIM domain p 39.0 22 0.00077 21.6 2.6 40 66-113 13-52 (79)
128 3mpx_A FYVE, rhogef and PH dom 38.5 6.6 0.00023 32.1 0.0 33 67-99 374-410 (434)
129 1wen_A Inhibitor of growth fam 37.6 25 0.00087 21.5 2.7 45 66-111 14-65 (71)
130 2jny_A Uncharacterized BCR; st 37.4 1.4 4.8E-05 27.3 -3.3 49 97-159 5-53 (67)
131 3c5k_A HD6, histone deacetylas 37.0 18 0.00062 24.2 2.1 25 68-92 24-48 (109)
132 1rut_X Flinc4, fusion protein 37.0 8.2 0.00028 28.1 0.3 46 68-113 32-80 (188)
133 4gne_A Histone-lysine N-methyl 35.3 32 0.0011 22.9 3.1 47 64-113 11-64 (107)
134 3asl_A E3 ubiquitin-protein li 34.4 9.1 0.00031 23.5 0.2 41 70-110 20-68 (70)
135 1wig_A KIAA1808 protein; LIM d 34.1 28 0.00096 20.9 2.5 37 69-113 6-42 (73)
136 3v43_A Histone acetyltransfera 32.4 58 0.002 21.5 4.1 30 67-96 4-42 (112)
137 2xqn_T Testin, TESS; metal-bin 32.2 26 0.0009 23.3 2.3 45 67-113 29-74 (126)
138 1weu_A Inhibitor of growth fam 31.9 30 0.001 22.4 2.4 43 67-111 35-85 (91)
139 1wev_A Riken cDNA 1110020M19; 31.6 9.8 0.00033 24.4 -0.0 47 67-113 15-74 (88)
140 1x64_A Alpha-actinin-2 associa 30.8 34 0.0012 21.3 2.5 39 67-113 24-62 (89)
141 1wyh_A SLIM 2, skeletal muscle 30.6 33 0.0011 20.2 2.3 37 69-113 6-44 (72)
142 2cor_A Pinch protein; LIM doma 30.5 32 0.0011 21.0 2.3 38 68-113 15-52 (79)
143 1x6a_A LIMK-2, LIM domain kina 30.3 32 0.0011 20.9 2.3 37 69-113 16-52 (81)
144 1nyp_A Pinch protein; LIM doma 30.2 24 0.00082 20.5 1.6 37 69-113 6-42 (66)
145 2lcq_A Putative toxin VAPC6; P 30.2 17 0.00057 25.8 1.0 27 82-114 134-160 (165)
146 3mjh_B Early endosome antigen 30.0 8.1 0.00028 20.5 -0.5 11 69-79 6-16 (34)
147 2hf1_A Tetraacyldisaccharide-1 30.0 1.3 4.6E-05 27.4 -4.3 11 103-113 9-19 (68)
148 2dar_A PDZ and LIM domain prot 29.4 20 0.00067 22.5 1.2 39 67-113 24-62 (90)
149 2yt5_A Metal-response element- 29.1 20 0.00067 21.3 1.1 45 67-111 5-61 (66)
150 3shb_A E3 ubiquitin-protein li 28.4 13 0.00044 23.4 0.1 41 70-110 28-76 (77)
151 2jrp_A Putative cytoplasmic pr 27.5 5.1 0.00017 25.7 -1.9 41 69-114 3-43 (81)
152 2d8z_A Four and A half LIM dom 27.2 32 0.0011 20.1 1.8 37 69-113 6-42 (70)
153 2rgt_A Fusion of LIM/homeobox 27.0 52 0.0018 23.1 3.2 45 67-113 32-76 (169)
154 2d8x_A Protein pinch; LIM doma 26.6 30 0.001 20.3 1.6 38 68-113 5-42 (70)
155 3ask_A E3 ubiquitin-protein li 26.1 22 0.00075 27.1 1.1 42 69-110 175-224 (226)
156 2jtn_A LIM domain-binding prot 25.8 40 0.0014 24.1 2.5 43 69-113 88-130 (182)
157 2jne_A Hypothetical protein YF 25.0 4 0.00014 27.1 -2.8 42 69-115 33-74 (101)
158 1x4l_A Skeletal muscle LIM-pro 24.8 53 0.0018 19.3 2.6 37 69-113 6-46 (72)
159 2jr6_A UPF0434 protein NMA0874 24.4 2.2 7.5E-05 26.4 -4.0 19 140-158 32-50 (68)
160 2cup_A Skeletal muscle LIM-pro 24.2 43 0.0015 21.2 2.1 45 67-113 32-77 (101)
161 2kdx_A HYPA, hydrogenase/ureas 24.1 30 0.001 23.2 1.4 28 82-115 75-103 (119)
162 2uzg_A Ubiquitin carboxyl-term 22.6 53 0.0018 21.3 2.3 25 69-93 26-53 (97)
163 1x63_A Skeletal muscle LIM-pro 22.6 45 0.0015 20.1 1.9 37 69-113 16-54 (82)
164 4g9i_A Hydrogenase maturation 22.4 25 0.00087 31.6 0.9 47 67-113 105-189 (772)
165 1x68_A FHL5 protein; four-and- 22.3 36 0.0012 20.4 1.4 37 69-113 6-46 (76)
166 2cuq_A Four and A half LIM dom 22.3 43 0.0015 20.1 1.8 37 69-113 16-52 (80)
167 2vpb_A Hpygo1, pygopus homolog 22.0 46 0.0016 19.9 1.8 30 67-96 7-41 (65)
168 3c6w_A P28ING5, inhibitor of g 21.9 22 0.00075 20.9 0.3 43 67-110 8-57 (59)
169 2e6s_A E3 ubiquitin-protein li 21.8 19 0.00065 22.5 -0.0 41 70-110 28-76 (77)
170 2dlo_A Thyroid receptor-intera 21.6 31 0.001 21.0 0.9 37 69-113 16-52 (81)
171 2cur_A Skeletal muscle LIM-pro 21.5 41 0.0014 19.6 1.5 37 69-113 6-42 (69)
172 2kwj_A Zinc finger protein DPF 21.5 45 0.0015 22.1 1.8 29 69-97 2-40 (114)
173 1v6g_A Actin binding LIM prote 21.0 32 0.0011 20.9 0.9 37 69-113 16-52 (81)
174 1wew_A DNA-binding family prot 20.8 46 0.0016 20.5 1.7 44 67-111 15-72 (78)
175 2vnf_A ING 4, P29ING4, inhibit 20.5 24 0.00082 20.8 0.2 43 67-110 9-58 (60)
176 1l8d_A DNA double-strand break 20.3 24 0.00083 23.2 0.3 12 102-113 47-58 (112)
177 2ehe_A Four and A half LIM dom 20.2 69 0.0024 19.3 2.4 37 69-113 16-54 (82)
178 1loi_A Cyclic 3',5'-AMP specif 20.1 7.3 0.00025 18.8 -1.7 11 90-100 7-17 (26)
179 1x61_A Thyroid receptor intera 20.0 90 0.0031 18.1 2.9 36 69-112 6-43 (72)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=9.8e-15 Score=93.58 Aligned_cols=51 Identities=31% Similarity=0.767 Sum_probs=45.2
Q ss_pred cCCCCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||..+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345678999999998776 889999999999999999989999999998874
No 2
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=91.42 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=45.7
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
......|+||++.+.+++.++|||.||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 44668999999999999999999999999999999988999999998763
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=3.3e-14 Score=102.92 Aligned_cols=48 Identities=40% Similarity=0.855 Sum_probs=44.6
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++..|+||++.+.+|+.++|||.||..|+..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 456899999999999999999999999999999999999999998864
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.6e-14 Score=90.65 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=45.5
Q ss_pred cCCCCCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
...+...|+||++.+.+++.+ +|||.||..|+..|+..+..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345678999999999999876 999999999999999888999999998874
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.44 E-value=9.8e-14 Score=90.65 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=45.4
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~ 113 (167)
...+...|+||++.+.+|+.++|||.||..||..|+.. +.+||+||..+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34567899999999999999999999999999999986 789999999876
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=88.39 Aligned_cols=53 Identities=26% Similarity=0.656 Sum_probs=44.7
Q ss_pred CCCCCcccccccCCC---cceeCCCCCcccHhhHHHhcccCCcccccccccccccC
Q 031028 65 IEREEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~---~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~ 117 (167)
......|+||++.+. .++.++|||.||..|+..|+..+.+||+||..+....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 345678999998874 45778999999999999999988999999998875443
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=7.6e-14 Score=85.16 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=41.6
Q ss_pred CCCCcccccccCCCc---ceeCC-CCCcccHhhHHHhcccCCcccccccccc
Q 031028 66 EREEECGICMETNSK---IVLPN-CNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~---~~~~~-CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+++..|+||++.+.. ++.++ |||.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999876 56665 9999999999999999999999998764
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=91.76 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=45.1
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
......|+||++.+.+++.++|||.||..|+..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456799999999999999999999999999999998899999999876
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=89.85 Aligned_cols=50 Identities=32% Similarity=0.778 Sum_probs=44.3
Q ss_pred cCCCCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 64 DIEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...+...|+||++.+.++ +.++|||.||..|+..|+..+..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345678999999998766 88999999999999999998899999999875
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=88.05 Aligned_cols=50 Identities=32% Similarity=0.764 Sum_probs=44.4
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcc---cCCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~---~~~~CP~Cr~~i~ 113 (167)
...+...|+||++.+.+++.++|||.||..|+..|+. ....||+||+.+.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456789999999999999999999999999999996 4569999999876
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=87.82 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=44.4
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcc-cCCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~ 113 (167)
...+...|+||++.+.+++.++|||.||..|+..|+. ....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3456789999999999999999999999999999994 5679999999876
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=1.3e-13 Score=87.66 Aligned_cols=49 Identities=33% Similarity=0.842 Sum_probs=43.9
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
.+..|+||++.+.++ +.++|||.||..|+..|+..+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 457899999999885 8899999999999999999889999999988743
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=9.8e-14 Score=90.63 Aligned_cols=51 Identities=27% Similarity=0.643 Sum_probs=45.3
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-------CCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-------SQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-------~~~CP~Cr~~i~~ 114 (167)
...+...|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 44567899999999999999999999999999999976 5699999998763
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=89.36 Aligned_cols=50 Identities=28% Similarity=0.600 Sum_probs=44.0
Q ss_pred cCCCCCcccccccCCCcceeCC-CCCcccHhhHHHhcccC--Ccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS--QSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~w~~~~--~~CP~Cr~~i~ 113 (167)
...+...|+||++.+.+++.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456789999999999999999 99999999999999755 69999999654
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=4.4e-14 Score=88.56 Aligned_cols=48 Identities=33% Similarity=0.823 Sum_probs=42.8
Q ss_pred CCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999998765 788999999999999999989999999998763
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.5e-13 Score=88.80 Aligned_cols=50 Identities=32% Similarity=0.658 Sum_probs=44.9
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc------CCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~------~~~CP~Cr~~i~~ 114 (167)
..+...|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4567899999999999999999999999999999976 6799999998763
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=1.4e-13 Score=83.93 Aligned_cols=47 Identities=26% Similarity=0.619 Sum_probs=41.8
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+..|+||++.+.+ ++.++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999755 788999999999999999998899999998764
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=87.47 Aligned_cols=49 Identities=37% Similarity=0.976 Sum_probs=44.5
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+...|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4466899999999988 889999999999999999999999999998874
No 19
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=89.62 Aligned_cols=49 Identities=27% Similarity=0.643 Sum_probs=43.2
Q ss_pred CCCCCcccccccCCCcc---eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..++..|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 34567899999988765 77899999999999999998999999999876
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.37 E-value=1.4e-13 Score=94.35 Aligned_cols=47 Identities=36% Similarity=0.888 Sum_probs=43.4
Q ss_pred CCCcccccccCCCccee-CCCCCcccHhhHHHhcccC-Ccccccccccc
Q 031028 67 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~~~-~~CP~Cr~~i~ 113 (167)
+...|+||++.+.+++. ++|||.||..||..|+..+ ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 55789999999999999 9999999999999999877 69999999886
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.3e-13 Score=88.77 Aligned_cols=52 Identities=31% Similarity=0.715 Sum_probs=45.2
Q ss_pred ccCCCCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccC---Cccccccccccc
Q 031028 63 ADIEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRS---QSCPFCRDSLKR 114 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~---~~CP~Cr~~i~~ 114 (167)
....+...|+||++.+.+ ++.++|||.||..|+..|+..+ ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344567899999999988 8999999999999999999765 799999998763
No 22
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=3.5e-13 Score=87.98 Aligned_cols=51 Identities=31% Similarity=0.623 Sum_probs=43.7
Q ss_pred cCCCCCcccccccCCCcc---eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 64 DIEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.......|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 344668999999987654 567999999999999999988999999998874
No 23
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=1.4e-13 Score=95.51 Aligned_cols=50 Identities=20% Similarity=0.513 Sum_probs=45.4
Q ss_pred CCCCCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+...|+||++.+.+++.+ +|||.||..|+..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 34668899999999999887 999999999999999988999999998874
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.36 E-value=2.3e-13 Score=91.77 Aligned_cols=49 Identities=29% Similarity=0.615 Sum_probs=43.0
Q ss_pred CCCCCcccccccCCCc---ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...+..|+||++.+.. ++.++|||.||..|+..|+..+.+||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3456789999988776 677899999999999999999999999999875
No 25
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=91.00 Aligned_cols=51 Identities=27% Similarity=0.587 Sum_probs=44.4
Q ss_pred ccCCCCCcccccccCCCcceeCC-CCCcccHhhHHHhcccC--Ccccccccccc
Q 031028 63 ADIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS--QSCPFCRDSLK 113 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~w~~~~--~~CP~Cr~~i~ 113 (167)
....+...|+||++.+.+|+.++ |||.||..||..|+..+ ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34557789999999999999999 99999999999998643 69999999863
No 26
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=87.46 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=43.6
Q ss_pred cCCCCCcccccccCCCcc---eeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 64 DIEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
+...+..|+||++.+..+ ..++|||.||..|+.+|+..+.+||+||+.+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344668999999998754 3448999999999999999889999999988743
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.3e-13 Score=87.58 Aligned_cols=51 Identities=29% Similarity=0.732 Sum_probs=45.4
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc------CCccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~------~~~CP~Cr~~i~~ 114 (167)
...+...|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34567899999999999999999999999999999876 6799999998874
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.8e-13 Score=82.92 Aligned_cols=45 Identities=33% Similarity=0.779 Sum_probs=40.1
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcc---cCCccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFC 108 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~---~~~~CP~C 108 (167)
...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999999999999999999999997 45689998
No 29
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6e-13 Score=87.93 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=40.5
Q ss_pred CCCcccccccCCCc--------------c-eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSK--------------I-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~--------------~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++..|+||++.+.. . ++++|||.||..||.+|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45779999988754 3 445699999999999999999999999998763
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=87.96 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=43.7
Q ss_pred CCCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
+...|+||++.+.+++.+ +|||.||..|+..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999877 899999999999999988999999998773
No 31
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=9e-13 Score=92.00 Aligned_cols=48 Identities=35% Similarity=0.643 Sum_probs=40.5
Q ss_pred CCCcccccccCCCcce------------------eCCCCCcccHhhHHHhc-----ccCCccccccccccc
Q 031028 67 REEECGICMETNSKIV------------------LPNCNHAMCLKCYREWR-----IRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~------------------~~~CgH~fc~~Ci~~w~-----~~~~~CP~Cr~~i~~ 114 (167)
.+..|+||++.+..+. .++|||.||..||..|+ ..+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999976543 78999999999999999 456799999998764
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=7e-13 Score=94.07 Aligned_cols=49 Identities=31% Similarity=0.577 Sum_probs=43.5
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccC-Cccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~-~~CP~Cr~~i~~ 114 (167)
.+...|+||++.+.+|+.++|||.||..|+..|+..+ ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3557899999999999999999999999999999754 499999998863
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=80.03 Aligned_cols=45 Identities=31% Similarity=0.907 Sum_probs=39.5
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhc---ccCCccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWR---IRSQSCPFC 108 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~---~~~~~CP~C 108 (167)
...+...|+||++.+.+++.++|||.||..|+..|+ .....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344678999999999999999999999999999995 456799998
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=1.8e-12 Score=86.51 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=45.6
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....+.|+||++.+.+|+.++|||+||..||..|+....+||+|+.++.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 4567999999999999999999999999999999988899999999876
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.28 E-value=8.4e-13 Score=93.79 Aligned_cols=50 Identities=32% Similarity=0.790 Sum_probs=45.0
Q ss_pred CCCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 66 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
.+...|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999998887 8999999999999999999999999999988743
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=5.8e-13 Score=93.26 Aligned_cols=49 Identities=39% Similarity=0.845 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~~ 114 (167)
.++..|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356789999999999999999999999999999976 6799999998863
No 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.26 E-value=1.8e-12 Score=91.23 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=45.2
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCC-ccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~-~CP~Cr~~i~~ 114 (167)
...+...|+||++.+.+++.++|||.||..|+..|+..+. +||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4456789999999999999999999999999999997664 99999998763
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.6e-12 Score=82.03 Aligned_cols=48 Identities=21% Similarity=0.625 Sum_probs=39.6
Q ss_pred CCCccccccc-CCCcc----eeCCCCCcccHhhHHHhcc-cCCccccccccccc
Q 031028 67 REEECGICME-TNSKI----VLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~-~~~~~----~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~~ 114 (167)
++..|+||++ .+.++ +.++|||.||..|+.+|+. ....||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 66665 5689999999999999965 45689999998763
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.26 E-value=2.9e-12 Score=88.06 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....+.|+||++.+.+|+.++|||+||..||..|+....+||+|+.++.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 4567899999999999999999999999999999988899999999876
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.5e-12 Score=89.23 Aligned_cols=47 Identities=28% Similarity=0.734 Sum_probs=42.1
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccC---Cccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS---QSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~---~~CP~Cr~~i~~ 114 (167)
...|+||++.+.+++.++|||.||..|+..|+..+ ..||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46799999999999999999999999999999765 389999998774
No 41
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.25 E-value=4.1e-12 Score=88.19 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=40.9
Q ss_pred CCCcccccccCCCcc------------------eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~------------------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+..|+||++.+..+ +.++|||.||..||.+|+..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457899999887643 55799999999999999999999999999864
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=93.90 Aligned_cols=48 Identities=29% Similarity=0.574 Sum_probs=43.5
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCC-ccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~-~CP~Cr~~i~~ 114 (167)
+...|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 5578999999999999999999999999999998654 89999998874
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=6.2e-12 Score=86.08 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=45.5
Q ss_pred CCCCCcccccccCCCcceeCCCC-CcccHhhHHHhcccCCcccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~Cg-H~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..+.+.|+||++.+.+|+.++|| |.||..||..|+....+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 44678999999999999999999 99999999999988889999999876
No 44
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.23 E-value=3.4e-12 Score=92.85 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=45.1
Q ss_pred ccCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCC-cccccccccc
Q 031028 63 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLK 113 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~-~CP~Cr~~i~ 113 (167)
...++...|+||++.+.+|+.++|||.||..||..|+.... .||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34557789999999999999999999999999999997654 9999999764
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.21 E-value=3.2e-12 Score=80.79 Aligned_cols=49 Identities=24% Similarity=0.661 Sum_probs=43.7
Q ss_pred CCCCcccccccCCCcceeC--CCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~--~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.++..|.||++...+++.+ +|||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3556899999999998876 99999 8999999999888899999998864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.20 E-value=6.2e-12 Score=88.08 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=43.7
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~~ 114 (167)
+...|+||++.+.+|+.++|||.||..|+..|+.. ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999999999999986 6799999998764
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.20 E-value=3.1e-12 Score=94.93 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=42.4
Q ss_pred CCCcccccccCCCcceeC-CCCCcccHhhHHHhccc-CCcccccccccc
Q 031028 67 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~ 113 (167)
....|+||++.+.+++.+ +|||.||..|+..|+.. ...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 446899999999999876 99999999999999986 789999999885
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=3.2e-11 Score=79.20 Aligned_cols=51 Identities=29% Similarity=0.653 Sum_probs=40.6
Q ss_pred cCCCCCcccccccCCC--cceeCC--CCCcccHhhHHHhcc-cCCccccccccccc
Q 031028 64 DIEREEECGICMETNS--KIVLPN--CNHAMCLKCYREWRI-RSQSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~--~~~~~~--CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~~ 114 (167)
..+++..|+||++.+. ++..++ |||.||..|+..+.. ....||.||+++..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3457789999999874 344444 999999999998764 45799999998874
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=8.4e-12 Score=76.69 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=40.3
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
.+...|+||++.+.+++.++|||.||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 356789999999999999999999999999774 5689999998763
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=7.4e-12 Score=87.97 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=41.4
Q ss_pred CCCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+...|+||++.+.+|+.+ +|||.||..|+..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999999998 9999999999999987 78999999875
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.14 E-value=9.6e-12 Score=78.33 Aligned_cols=48 Identities=21% Similarity=0.594 Sum_probs=42.4
Q ss_pred CCCcccccccCCCcceeC--CCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~--~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....|.||++...+++.+ +|||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 446899999998888766 99999 9999999999888899999998864
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.14 E-value=1e-11 Score=80.62 Aligned_cols=44 Identities=34% Similarity=0.815 Sum_probs=40.0
Q ss_pred CCCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34679999999999999999999 999999998 789999998874
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=8.1e-12 Score=88.63 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=43.8
Q ss_pred CCCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 66 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++...|+||++.+..+ +.++|||.||..|+.+|+..+++||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4668899999987765 888999999999999999999999999998863
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.11 E-value=2.9e-11 Score=100.84 Aligned_cols=48 Identities=35% Similarity=0.928 Sum_probs=44.0
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcc-cCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~~ 114 (167)
....|+||++...+++.++|||.||..|+..|+. ....||+||+++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999999999999999999999999998 67899999998874
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=5.3e-11 Score=94.24 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=44.3
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~ 113 (167)
.....+.|+||++.+.+|++++|||+||..||..|+.. +.+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34467899999999999999999999999999999975 446999999876
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=4.4e-11 Score=89.04 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=45.1
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcccC-Cccccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKR 114 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~-~~CP~Cr~~i~~ 114 (167)
..++.+.|+||++.+.+|+.++|||.||..|+.+|+..+ .+||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 455778999999999999999999999999999999754 499999998763
No 57
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.05 E-value=1.9e-11 Score=86.25 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=1.0
Q ss_pred CCCcccccccCCCcc------------------eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~------------------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999887642 33589999999999999999999999999764
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=6.4e-11 Score=80.23 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=40.6
Q ss_pred CCCCcccccccCCCcceeCC-CCCcccHhhHHHhcccC------Ccccc--cccc
Q 031028 66 EREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS------QSCPF--CRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~-CgH~fc~~Ci~~w~~~~------~~CP~--Cr~~ 111 (167)
...+.|+||++.+.+|+.++ |||+||..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46689999999999999995 99999999999999653 49999 9865
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.03 E-value=3.2e-10 Score=85.40 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=45.1
Q ss_pred ccCCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc-CCcccccccccc
Q 031028 63 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 113 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~-~~~CP~Cr~~i~ 113 (167)
......+.|+||++.+.+|+.++|||+||..||..|+.. +.+||+|+.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 445577999999999999999999999999999999975 357999999876
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-10 Score=74.18 Aligned_cols=43 Identities=35% Similarity=0.831 Sum_probs=38.1
Q ss_pred CCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
...|+||++.+.+++.++|||. ||..|+... ..||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 3579999999999999999999 999999653 789999998874
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.2e-10 Score=71.38 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=40.4
Q ss_pred CCCCCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..+...|.||++...++++++|||. ||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3456789999999999999999999 99999984 4789999998874
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.6e-10 Score=74.49 Aligned_cols=50 Identities=20% Similarity=0.590 Sum_probs=40.9
Q ss_pred CCCCCcccccccCCC--cceeCCCC-----CcccHhhHHHhcccC--Cccccccccccc
Q 031028 65 IEREEECGICMETNS--KIVLPNCN-----HAMCLKCYREWRIRS--QSCPFCRDSLKR 114 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fc~~Ci~~w~~~~--~~CP~Cr~~i~~ 114 (167)
..+...|.||++.+. .+..++|+ |.||..||.+|+..+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345678999998764 45678996 999999999999765 599999998763
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.91 E-value=2.4e-10 Score=75.08 Aligned_cols=44 Identities=32% Similarity=0.759 Sum_probs=39.3
Q ss_pred CCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCcccccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
...|.||++...+++.++|||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3579999999999999999999 999999887 3899999998753
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=2.2e-09 Score=69.66 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccC--Cccccccccccc
Q 031028 66 EREEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 114 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~--~~CP~Cr~~i~~ 114 (167)
+....|+||.+.+... ....|+|.||..||.+|+..+ .+||+||+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3457899999998754 344899999999999999876 899999988764
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.1e-09 Score=84.15 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCCCcccccccCCCccee-CCCCCcccHhhHHHhcccC--Ccccc--cccccc
Q 031028 66 EREEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRS--QSCPF--CRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~-~~CgH~fc~~Ci~~w~~~~--~~CP~--Cr~~i~ 113 (167)
.....|+||++.+.+|+. +.|||.||..||..|+..+ ..||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 355799999999999997 4999999999999998753 58999 999775
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.74 E-value=2.1e-09 Score=88.68 Aligned_cols=44 Identities=32% Similarity=0.908 Sum_probs=40.4
Q ss_pred CCCcccccccCCCcceeCCCCCc-ccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~-fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999999999999999999 999999988 689999998874
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.69 E-value=5e-09 Score=65.41 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCcccccccCCCcceeC-CCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~-~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.+.|+|+.+.+.+|+.+ ++||.|+..||.+|+..+.+||+.+.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 36799999999999998 99999999999999988888999999876
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.5e-08 Score=68.20 Aligned_cols=45 Identities=20% Similarity=0.610 Sum_probs=36.4
Q ss_pred CCCcccccccCCCccee---CCCCCcccHhhHHHhccc--------CCcccc--cccc
Q 031028 67 REEECGICMETNSKIVL---PNCNHAMCLKCYREWRIR--------SQSCPF--CRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~w~~~--------~~~CP~--Cr~~ 111 (167)
....|+||++.+..+.. .+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999999877643 379999999999988742 248999 9987
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.52 E-value=2.5e-08 Score=81.69 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=38.3
Q ss_pred CCCCcccccccCCCc-c-------eeCCCCCcccHhhHHHhcccC-----------Ccccccccccc
Q 031028 66 EREEECGICMETNSK-I-------VLPNCNHAMCLKCYREWRIRS-----------QSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~-~-------~~~~CgH~fc~~Ci~~w~~~~-----------~~CP~Cr~~i~ 113 (167)
+....|+||++.+.+ . ....|||.||..|+.+|+... ..||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 355789999988665 2 124799999999999999642 48999999886
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.37 E-value=2.3e-07 Score=57.57 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=38.5
Q ss_pred CCCCcccccccCCCcceeCCCC--C---cccHhhHHHhccc--CCcccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCN--H---AMCLKCYREWRIR--SQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~Cg--H---~fc~~Ci~~w~~~--~~~CP~Cr~~i~ 113 (167)
++...|.||++...++...||. | .||..|+.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3557899999876666678865 4 7999999999964 579999998765
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.37 E-value=1.9e-07 Score=63.33 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=39.0
Q ss_pred cccccccCCCc-ceeCCCCCcccHhhHHHhcc-cCCccccccccccccc
Q 031028 70 ECGICMETNSK-IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKRVN 116 (167)
Q Consensus 70 ~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~w~~-~~~~CP~Cr~~i~~~~ 116 (167)
.|++|--.+.. +...||+|.||+.|+..|.+ ..++||.|+.++..+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58888777654 57789999999999999985 5689999999988653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.62 E-value=7.1e-05 Score=58.51 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=39.4
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccC--Cccccccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~--~~CP~Cr~~i~~ 114 (167)
....|.||.+....+ ....|+|.||..|+..|+..+ ..||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 457899999998765 345699999999999999754 499999987664
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.33 E-value=0.0018 Score=43.37 Aligned_cols=33 Identities=18% Similarity=0.513 Sum_probs=27.0
Q ss_pred CCCcccccccC-CCccee--CCCCCcccHhhHHH-hc
Q 031028 67 REEECGICMET-NSKIVL--PNCNHAMCLKCYRE-WR 99 (167)
Q Consensus 67 ~~~~C~IC~~~-~~~~~~--~~CgH~fc~~Ci~~-w~ 99 (167)
++..|.||.+. +.+++. +.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 34789999975 566766 89999999999998 43
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.21 E-value=0.042 Score=36.54 Aligned_cols=46 Identities=33% Similarity=0.688 Sum_probs=36.6
Q ss_pred CCCcccccccCCCcceeCCC-CCcccHhhHHHhcccCCccccccccccc
Q 031028 67 REEECGICMETNSKIVLPNC-NHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~C-gH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....|..|.-.... +..| .|-.|..|+.-.+..+..||+|..++..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 45788888765443 3335 6889999999999999999999998864
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.86 E-value=0.13 Score=47.29 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=45.0
Q ss_pred cCCCCCcccccccCCCcceeCCCC-CcccHhhHHHhcccCCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~Cg-H~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...+.+.|+|-.+...+|+.++-| ++|-...|.+|+..+.+||+=|.++.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 345779999999999999999998 58999999999988899999998876
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.33 E-value=0.24 Score=30.61 Aligned_cols=45 Identities=18% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccC----Ccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~----~~CP~Cr~~ 111 (167)
....|.+|.+...-...-.|...||..|+...+... =.||.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 446799998664433445789999999998766432 389999764
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.93 E-value=0.45 Score=30.70 Aligned_cols=37 Identities=27% Similarity=0.506 Sum_probs=27.5
Q ss_pred CCCCCcccccccCCCcceeCCC----CCcccHhhHHHhccc
Q 031028 65 IEREEECGICMETNSKIVLPNC----NHAMCLKCYREWRIR 101 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~C----gH~fc~~Ci~~w~~~ 101 (167)
......|.+|.+...+.....| +|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3456889999999877533333 789999999887754
No 78
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=84.79 E-value=1.8 Score=30.39 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCCCcccccccCCC-----cceeCCCCCcccHhhHHHhccc----CCcccccccc
Q 031028 66 EREEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~-----~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~ 111 (167)
.....|.+|...+. ......|.|.+|..|-..-... .=.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 46688999998863 2356789999999886532111 1267777653
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.75 E-value=2 Score=28.14 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=36.4
Q ss_pred CCCcccccccCCCc-----c--eeCCCCCcccHhhHH-HhcccCCcccccccccccc
Q 031028 67 REEECGICMETNSK-----I--VLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 67 ~~~~C~IC~~~~~~-----~--~~~~CgH~fc~~Ci~-~w~~~~~~CP~Cr~~i~~~ 115 (167)
....|.||-+..-. + ..-.|+-..|..|.. ......+.||.|.....+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 44689999987331 2 233688889999998 4446778999999988754
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.69 E-value=0.85 Score=27.48 Aligned_cols=47 Identities=21% Similarity=0.560 Sum_probs=31.9
Q ss_pred cCCCCCcccccccCCCcceeCCCCCcccHhhHHHhcc----cCCccccccc
Q 031028 64 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI----RSQSCPFCRD 110 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~----~~~~CP~Cr~ 110 (167)
+...+..|.+|.....-...-.|...||..|+..-+. ..=.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456678999987533233346888899999986432 2238999965
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.35 E-value=0.8 Score=34.35 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=31.6
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 112 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~i 112 (167)
.+..|.+|.....-...-.|...||..|+.+-+.. .=.||.|+..-
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999865432333468888999998765432 23899998743
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.08 E-value=4.7 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCcccccccCCCcc----eeCCCCCcccHhhHHH
Q 031028 68 EEECGICMETNSKI----VLPNCNHAMCLKCYRE 97 (167)
Q Consensus 68 ~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 97 (167)
...|.+|...|... ..-.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35799999887632 4557999999999654
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.86 E-value=0.94 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=30.1
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCcccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~ 111 (167)
..+..|.+|.+...-...-.|...||..|+..-+.. .=.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 355779999865332333458888999998754332 2379999754
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.75 E-value=0.85 Score=33.50 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=31.8
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 112 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~i 112 (167)
.+..|.+|.....-...-.|.-.||..|+.+-+.. .=.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999866443344468888999998765432 23799998743
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=75.82 E-value=4.2 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCCcccccccCCCcc--eeCCCCCcccHhhHHHh
Q 031028 66 EREEECGICMETNSKI--VLPNCNHAMCLKCYREW 98 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~--~~~~CgH~fc~~Ci~~w 98 (167)
..+..|.||-...... -.--|+-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhcccc
Confidence 3678899998432221 11238999999999986
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.39 E-value=0.71 Score=27.25 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=29.2
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 110 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~ 110 (167)
..+..|.+|.....-...-.|...||..|+.+-+.. .=.||.|..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999876433333468888999998753322 226887753
No 87
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=74.06 E-value=5.3 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCcccccccCCC-----cceeCCCCCcccHhhHHHhcccC--Ccccccccc
Q 031028 67 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~~~~~~CgH~fc~~Ci~~w~~~~--~~CP~Cr~~ 111 (167)
.+..|.+|...+. ......|.|.+|..|-. |.... =.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5689999998743 23667899999999972 33221 278888764
No 88
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.26 E-value=0.68 Score=32.07 Aligned_cols=45 Identities=18% Similarity=0.489 Sum_probs=29.9
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
....|..|...|.. -..-.||..||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 44679999988763 2556899999999976554445678888553
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.95 E-value=2.8 Score=25.22 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=28.7
Q ss_pred CcccccccCCCcc---eeCCCCCcccHhhHHHhcccCCccccc
Q 031028 69 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFC 108 (167)
Q Consensus 69 ~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~~~~CP~C 108 (167)
..|-.|...+.+. ....|++.||..|=.-.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588888777543 357899999999965443444689987
No 90
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=71.34 E-value=6.7 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=30.8
Q ss_pred CCCcccccccCCCcceeC--CCCCcccHhhHHHhcccC----------Cccccccc
Q 031028 67 REEECGICMETNSKIVLP--NCNHAMCLKCYREWRIRS----------QSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~--~CgH~fc~~Ci~~w~~~~----------~~CP~Cr~ 110 (167)
.+..|.+|-+-..-...- .|...||..||...+... =.|=+|..
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456788887664433333 799999999999988432 26777764
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.89 E-value=1.2 Score=27.23 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=30.3
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 110 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~ 110 (167)
..+..|.+|.....-...-.|.-.||..|+.+-+.. .=.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999875433333468888999998753322 237999965
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.68 E-value=9.1 Score=27.11 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=33.0
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhcc-----------cCCccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-----------RSQSCPFCRD 110 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~-----------~~~~CP~Cr~ 110 (167)
...+..|.+|.+-..-.-.-.|--.||..|+.+-+. ..=.||+|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 335678999997755444457888999999986553 1237999974
No 93
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=69.79 E-value=7.8 Score=28.01 Aligned_cols=44 Identities=20% Similarity=0.531 Sum_probs=30.3
Q ss_pred CCCcccccccCCCcceeC--CCCCcccHhhHHHhcccC----------Cccccccc
Q 031028 67 REEECGICMETNSKIVLP--NCNHAMCLKCYREWRIRS----------QSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~--~CgH~fc~~Ci~~w~~~~----------~~CP~Cr~ 110 (167)
.+..|.+|-+-..-...- +|...||..||..++... =.|=+|.-
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 457899998754322223 688899999999987542 16777753
No 94
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=69.07 E-value=0.61 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.826 Sum_probs=16.3
Q ss_pred CCCCcccHhhHHHhcccCCccc
Q 031028 85 NCNHAMCLKCYREWRIRSQSCP 106 (167)
Q Consensus 85 ~CgH~fc~~Ci~~w~~~~~~CP 106 (167)
.|||.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999855 5553
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=68.06 E-value=1.4 Score=26.23 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=30.6
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 112 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~i 112 (167)
.+..|.+|.....-...-.|.-.||..|+.+-+.. .=.||.|....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999875433334468888999999754332 23799997643
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.59 E-value=11 Score=26.22 Aligned_cols=44 Identities=27% Similarity=0.547 Sum_probs=30.7
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcc-----------cCCccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI-----------RSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~-----------~~~~CP~Cr~ 110 (167)
.+..|.+|.+-..-.-.-.|-..||..|+.+-+. ..=.|++|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4567999997644333446889999999986421 1138999965
No 97
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=66.51 E-value=4.2 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHH
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~ 97 (167)
++..|.+|...|.- -..-.||..||..|...
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 34689999988763 24457999999999643
No 98
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.48 E-value=3.9 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHh
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREW 98 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w 98 (167)
+...|.+|...|.- -..-.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 44679999988763 244579999999997543
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.68 E-value=3.7 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=23.6
Q ss_pred CCCcccccccCCCcc----eeCCCCCcccHhhHHHh
Q 031028 67 REEECGICMETNSKI----VLPNCNHAMCLKCYREW 98 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~w 98 (167)
+...|.+|...|.-. ..-.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 335799999887632 44579999999997643
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.16 E-value=0.8 Score=36.80 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=35.0
Q ss_pred CCCCcccccccCCCcceeC----CCC--CcccHhhHHHhcccCCcccccccc
Q 031028 66 EREEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~----~Cg--H~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
.....|++|-....-.++. .=| +.+|..|-..|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5668999999885543332 234 458999999999888999999875
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=64.87 E-value=2.5 Score=31.32 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=29.8
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCcccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 111 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~ 111 (167)
+..|.+|.+...-...-.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999866443344467788999999653322 2379999864
No 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.63 E-value=3.9 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~ 99 (167)
+...|.+|...|.- -....||+.||..|.....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34579999987653 2456899999999976543
No 103
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.24 E-value=4.2 Score=25.91 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCCcccccccCCCcc----eeCCCCCcccHhhHHH
Q 031028 67 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 97 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~ 97 (167)
+...|.+|...|... ..-.||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 335799998887532 4457999999999643
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.05 E-value=2.1 Score=28.85 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=18.0
Q ss_pred cceeCCCCCcccHhhHHHhcccCCcccccccc
Q 031028 80 KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 111 (167)
Q Consensus 80 ~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~ 111 (167)
++....||+.|. .-+.....||.|+..
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 345567999992 122345799999875
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.37 E-value=3.7 Score=26.72 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCCCCcccccccCCCcceeCCCCCcccHhhHHHhccc----CCcccccccc
Q 031028 65 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 111 (167)
Q Consensus 65 ~~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~ 111 (167)
...+..|.+|.....-...-.|.-.||..|+.+=+.. .=.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999976433333467778999999654432 2379999753
No 106
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.35 E-value=3.7 Score=30.92 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCCcccccccCCCc----ceeCCCCCcccHhhHHH
Q 031028 66 EREEECGICMETNSK----IVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~ 97 (167)
.++..|.+|...|.- -..-.||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 346789999888753 24567999999999654
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.10 E-value=3.8 Score=31.09 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=24.5
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHh
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREW 98 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w 98 (167)
++..|.+|...|.- -....||+.||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45689999987763 355689999999997643
No 108
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.02 E-value=1.8 Score=26.10 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=21.8
Q ss_pred CcccccccCCCcc------eeCC--CCCcccHhhHHHhcccC
Q 031028 69 EECGICMETNSKI------VLPN--CNHAMCLKCYREWRIRS 102 (167)
Q Consensus 69 ~~C~IC~~~~~~~------~~~~--CgH~fc~~Ci~~w~~~~ 102 (167)
..|+-|...+... .... |++.||..|...|...+
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4688777665431 2223 88888888888876543
No 109
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.85 E-value=4.7 Score=22.92 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=25.7
Q ss_pred cccccccCCCcc---eeCCCCCcccHhhHHHhccc----CCccccccc
Q 031028 70 ECGICMETNSKI---VLPNCNHAMCLKCYREWRIR----SQSCPFCRD 110 (167)
Q Consensus 70 ~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~ 110 (167)
.|.+|....... .--.|...||..|+.+=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887653322 22368888999999643322 236888864
No 110
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=60.15 E-value=1.5 Score=26.47 Aligned_cols=46 Identities=28% Similarity=0.655 Sum_probs=26.4
Q ss_pred CCCCCcccccccC-CCcc---eeCCCCCcccHhhHHHhcccCC----ccccccc
Q 031028 65 IEREEECGICMET-NSKI---VLPNCNHAMCLKCYREWRIRSQ----SCPFCRD 110 (167)
Q Consensus 65 ~~~~~~C~IC~~~-~~~~---~~~~CgH~fc~~Ci~~w~~~~~----~CP~Cr~ 110 (167)
..+...|.||... |.+. ...-|.-.||..|-..|-..++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3456789999866 4443 3334556667766655543322 5555553
No 111
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.47 E-value=4.4 Score=27.04 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCCcccccccCCCc---ceeCCCCCcccHhhHHHhcc
Q 031028 66 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWRI 100 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~ 100 (167)
..+..|.+|.+.... ..-..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 356789999877543 34467999999999976553
No 112
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.29 E-value=6.1 Score=25.49 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHH
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~ 97 (167)
....|.+|...|.. -..-.||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 44579999988763 24467999999999754
No 113
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.67 E-value=4.9 Score=24.81 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCCcccccccCCCcc---eeCCCCCcccHhhHHHhcc----cCCcccccccccc
Q 031028 67 REEECGICMETNSKI---VLPNCNHAMCLKCYREWRI----RSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~----~~~~CP~Cr~~i~ 113 (167)
....|.+|....... ..-.|.-.||..|+..-.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445799998764332 2235788899999974432 2347999987554
No 114
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.92 E-value=4.6 Score=26.88 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=10.6
Q ss_pred cccHhhHHHhcc
Q 031028 89 AMCLKCYREWRI 100 (167)
Q Consensus 89 ~fc~~Ci~~w~~ 100 (167)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 115
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.16 E-value=11 Score=31.00 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=30.9
Q ss_pred CCcccccccCCCccee-CCCCCcccHhh--HHHhcc--cCCcccccccccc
Q 031028 68 EEECGICMETNSKIVL-PNCNHAMCLKC--YREWRI--RSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~-~~CgH~fc~~C--i~~w~~--~~~~CP~Cr~~i~ 113 (167)
.+.|++=...+..|+. ..|.|.-|..- +..... ..-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4789988888777744 67999955543 333222 2349999988764
No 116
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.01 E-value=5 Score=26.74 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=10.6
Q ss_pred cccHhhHHHhcc
Q 031028 89 AMCLKCYREWRI 100 (167)
Q Consensus 89 ~fc~~Ci~~w~~ 100 (167)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 117
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=52.94 E-value=11 Score=30.78 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCcccccccCCCcce-eCCCCCcccHh--hHHHhccc--CCcccccccccc
Q 031028 68 EEECGICMETNSKIV-LPNCNHAMCLK--CYREWRIR--SQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~-~~~CgH~fc~~--Ci~~w~~~--~~~CP~Cr~~i~ 113 (167)
...|++=...+..|+ ...|.|.-|.. -+.....+ .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 468999888877764 46899995544 33333222 349999998765
No 118
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.62 E-value=6.5 Score=26.52 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=33.8
Q ss_pred CcccccccCCC---cceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 69 EECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 69 ~~C~IC~~~~~---~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
+.|..|...+. ......=|..||..|..+.+.....|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 57888887775 23444567789999998866554589999998873
No 119
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.27 E-value=8.5 Score=24.78 Aligned_cols=48 Identities=27% Similarity=0.553 Sum_probs=31.1
Q ss_pred CCCCCcccccccCC--Cc-c--eeCCCCCcccHhhHHHhc--ccCCccccccccc
Q 031028 65 IEREEECGICMETN--SK-I--VLPNCNHAMCLKCYREWR--IRSQSCPFCRDSL 112 (167)
Q Consensus 65 ~~~~~~C~IC~~~~--~~-~--~~~~CgH~fc~~Ci~~w~--~~~~~CP~Cr~~i 112 (167)
...+..|.||.... .. . ..-.|.-.||..|+..-. ...=.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34668899999764 11 1 223677789999997432 1234799997643
No 120
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.71 E-value=9.8 Score=23.38 Aligned_cols=32 Identities=28% Similarity=0.667 Sum_probs=23.8
Q ss_pred CCCCcccccccCCCcceeCCC-CCcccHhhHHHh
Q 031028 66 EREEECGICMETNSKIVLPNC-NHAMCLKCYREW 98 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~C-gH~fc~~Ci~~w 98 (167)
++..-|.||.+... .....| |-.||..|....
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 34567999999843 556678 788999997654
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.58 E-value=3 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=31.5
Q ss_pred ccCCCCCcccccccCCCcc---eeCCCCCcccHhhHHHhccc----CCcccccccc
Q 031028 63 ADIEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 111 (167)
Q Consensus 63 ~~~~~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~ 111 (167)
.....+..|.||....... ..-.|...||..|+.+=+.. .=.||.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3444567899998764322 22368888999998743322 2379999764
No 122
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.23 E-value=1.9 Score=27.70 Aligned_cols=26 Identities=31% Similarity=0.990 Sum_probs=18.1
Q ss_pred eCCCCCcccHhhHHHhcccC--Cccccc
Q 031028 83 LPNCNHAMCLKCYREWRIRS--QSCPFC 108 (167)
Q Consensus 83 ~~~CgH~fc~~Ci~~w~~~~--~~CP~C 108 (167)
...|++.||..|-..|-..+ .+|..-
T Consensus 46 C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 46 CPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred eCCCCCccccccCCchhhcCCCCChHHH
Confidence 34599999999999994333 356443
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.60 E-value=12 Score=23.11 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=29.7
Q ss_pred CCCCCcccccccCC--C-cc--eeCCCCCcccHhhHHHhc--ccCCccccccc
Q 031028 65 IEREEECGICMETN--S-KI--VLPNCNHAMCLKCYREWR--IRSQSCPFCRD 110 (167)
Q Consensus 65 ~~~~~~C~IC~~~~--~-~~--~~~~CgH~fc~~Ci~~w~--~~~~~CP~Cr~ 110 (167)
...+..|.||.... . +. ..-.|.-.||..|+..-. ...=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34667899998663 1 12 223688889999997422 12237888865
No 124
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.00 E-value=5.5 Score=23.75 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=28.5
Q ss_pred CCCcccccccCCCc-c---eeCCCCCcccHhhHHHhcc-----cCCccccccc
Q 031028 67 REEECGICMETNSK-I---VLPNCNHAMCLKCYREWRI-----RSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~-~---~~~~CgH~fc~~Ci~~w~~-----~~~~CP~Cr~ 110 (167)
+...|++|.....+ . ..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 55779999876532 1 2236777899999853221 2358999975
No 125
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=41.95 E-value=13 Score=25.08 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCcccccccCCC---cceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~---~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.-+.|..|...+. ......=|..||..|..+.+.....|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 4478888887764 2344456778999998876544348999998875
No 126
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=39.75 E-value=10 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCcccccccCCCcc---eeCCCCCcccHhhHHHhcc---cCCccccccc
Q 031028 67 REEECGICMETNSKI---VLPNCNHAMCLKCYREWRI---RSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~---~~~~CP~Cr~ 110 (167)
+...| ||....... ..-.|.-.||..|+..-.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 787654433 2236788899999864222 1248999964
No 127
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.96 E-value=22 Score=21.61 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=29.2
Q ss_pred CCCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 66 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.....|.-|...+...++..-+..||..| ..|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 34568999998876655666677777777 36888888765
No 128
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.46 E-value=6.6 Score=32.14 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCcccccccCCCc----ceeCCCCCcccHhhHHHhc
Q 031028 67 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR 99 (167)
Q Consensus 67 ~~~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~ 99 (167)
....|.+|...|.- -....||+.||..|.....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 34679999887653 2456799999999987543
No 129
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=37.65 E-value=25 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=26.3
Q ss_pred CCCCcccccccCCCcceeC--C--CC-CcccHhhHHHhc--ccCCcccccccc
Q 031028 66 EREEECGICMETNSKIVLP--N--CN-HAMCLKCYREWR--IRSQSCPFCRDS 111 (167)
Q Consensus 66 ~~~~~C~IC~~~~~~~~~~--~--Cg-H~fc~~Ci~~w~--~~~~~CP~Cr~~ 111 (167)
.+...| +|........+. . |. ..||..|+.--. ...-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 345677 898754322221 3 55 579999986111 122489999764
No 130
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.43 E-value=1.4 Score=27.29 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=28.1
Q ss_pred HhcccCCcccccccccccccCCCceeccCcchhhhhhhhhHHHHHHHHHHHhhCCCcCCCccc
Q 031028 97 EWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLF 159 (167)
Q Consensus 97 ~w~~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~d~~~~~~e~~~r~~~~i~~lp~~~~~~~~ 159 (167)
+|+..--.||.|+.++...... .. ..-...++.|--.+.+|.+++|...
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~~--------g~------LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLESE--------QL------LVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETTT--------TE------EEETTTTEEEEEETTEECCCSSCCE
T ss_pred HHHHHHhCCCCCCCcCeEeCCC--------CE------EEcCCCCccccCCCCEeeeChhHhc
Confidence 3444456899999877632111 11 1112345566667788888887544
No 131
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=36.99 E-value=18 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.0
Q ss_pred CCcccccccCCCcceeCCCCCcccH
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCL 92 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~ 92 (167)
...|..|......-+.+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999988777788999999985
No 132
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=36.96 E-value=8.2 Score=28.07 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCcccccccCCCc---ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~---~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
-+.|..|...+.. .....=|..||..|..+.+.....|..|..+|.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 3677777766543 334445677888887765443236888888775
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.33 E-value=32 Score=22.94 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=27.4
Q ss_pred cCCCCCcccccccCCCccee-C--CCCCcccHhhHHHhccc----CCcccccccccc
Q 031028 64 DIEREEECGICMETNSKIVL-P--NCNHAMCLKCYREWRIR----SQSCPFCRDSLK 113 (167)
Q Consensus 64 ~~~~~~~C~IC~~~~~~~~~-~--~CgH~fc~~Ci~~w~~~----~~~CP~Cr~~i~ 113 (167)
+...+..|.+|.+.. +.+. - .|-..||..|+. +.. .=.||.|...+.
T Consensus 11 ~~~~~~~C~~C~~~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 11 KQMHEDYCFQCGDGG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CCSSCSSCTTTCCCS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred cCCCCCCCCcCCCCC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 344667899998532 2222 1 366778889986 322 126777665443
No 134
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=34.44 E-value=9.1 Score=23.49 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=24.8
Q ss_pred cccccccCCCccee---CCCCCcccHhhHHHhccc-----CCccccccc
Q 031028 70 ECGICMETNSKIVL---PNCNHAMCLKCYREWRIR-----SQSCPFCRD 110 (167)
Q Consensus 70 ~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~w~~~-----~~~CP~Cr~ 110 (167)
.|.+|........+ -.|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56677754333322 257788999998743321 236888864
No 135
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.09 E-value=28 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.3
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+-|...+...++..-+..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46788877766655555666677666 35777776654
No 136
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.45 E-value=58 Score=21.48 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=20.8
Q ss_pred CCCcccccccCCC-----c----ceeCCCCCcccHhhHH
Q 031028 67 REEECGICMETNS-----K----IVLPNCNHAMCLKCYR 96 (167)
Q Consensus 67 ~~~~C~IC~~~~~-----~----~~~~~CgH~fc~~Ci~ 96 (167)
....|.+|+.... . ..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567999986521 1 1334799999999995
No 137
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.22 E-value=26 Score=23.27 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCCcccccccCCCc-ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSK-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~-~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+-+.|..|...+.. .....=|..+|..|..+. ....|..|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 34778888877654 344456778999998664 3468999999887
No 138
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.86 E-value=30 Score=22.41 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCCcccccccCCCcceeC---C--CC-CcccHhhHHHhc--ccCCcccccccc
Q 031028 67 REEECGICMETNSKIVLP---N--CN-HAMCLKCYREWR--IRSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~---~--Cg-H~fc~~Ci~~w~--~~~~~CP~Cr~~ 111 (167)
+...| +|...... ..+ . |. ..||..|+.--. ...-.||.|+..
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 44567 99876432 233 2 44 569999986111 123489999764
No 139
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.58 E-value=9.8 Score=24.43 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCcccccccCCC---cc--eeCCCCCcccHhhHHHhcc--------cCCcccccccccc
Q 031028 67 REEECGICMETNS---KI--VLPNCNHAMCLKCYREWRI--------RSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~---~~--~~~~CgH~fc~~Ci~~w~~--------~~~~CP~Cr~~i~ 113 (167)
.+..|.+|..... .. ..-.|...||..|+.+-+. ..=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4568999987643 22 2236888899999975443 2238999977554
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.76 E-value=34 Score=21.28 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=28.4
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|.-|...+...++..-+..||..| ..|-.|...+.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 4467999998877655555677777777 45888888765
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.64 E-value=33 Score=20.19 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=25.9
Q ss_pred CcccccccCCC--cceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+-|...+. ..++..-|..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 46888888776 345555677777766 45888887665
No 142
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.54 E-value=32 Score=20.97 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...|+-|...+....+..-|..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 357999988777655555677677666 46888988776
No 143
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.33 E-value=32 Score=20.88 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=25.4
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+...++..-+..||..| ..|-.|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 36888887766555555666676666 46888887764
No 144
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.21 E-value=24 Score=20.49 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=25.6
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+....+..-|..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 46888887766555555666677666 45888887765
No 145
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=30.18 E-value=17 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=18.1
Q ss_pred eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 82 VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
....|||.|=.. .....||.|..++..
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCccee
Confidence 556788887432 223489999987653
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.04 E-value=8.1 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=6.0
Q ss_pred CcccccccCCC
Q 031028 69 EECGICMETNS 79 (167)
Q Consensus 69 ~~C~IC~~~~~ 79 (167)
+.|++|+..+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 55666655443
No 147
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.96 E-value=1.3 Score=27.44 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=7.7
Q ss_pred Ccccccccccc
Q 031028 103 QSCPFCRDSLK 113 (167)
Q Consensus 103 ~~CP~Cr~~i~ 113 (167)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 46888877665
No 148
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.40 E-value=20 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=28.0
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
....|+-|...+...++..-|..||..| ..|-.|+.++.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3457999988876655555677777766 46888888776
No 149
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.09 E-value=20 Score=21.28 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCcccccccCCC---cc--eeCCCCCcccHhhHHHhcc-------cCCcccccccc
Q 031028 67 REEECGICMETNS---KI--VLPNCNHAMCLKCYREWRI-------RSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~---~~--~~~~CgH~fc~~Ci~~w~~-------~~~~CP~Cr~~ 111 (167)
.+..|.+|..... .. ..-.|.-.||..|+..-+. ..=.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 5578999987632 11 2346888899999875332 22378888653
No 150
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=28.36 E-value=13 Score=23.37 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=24.2
Q ss_pred cccccccCCCccee---CCCCCcccHhhHHHhccc----C-Cccccccc
Q 031028 70 ECGICMETNSKIVL---PNCNHAMCLKCYREWRIR----S-QSCPFCRD 110 (167)
Q Consensus 70 ~C~IC~~~~~~~~~---~~CgH~fc~~Ci~~w~~~----~-~~CP~Cr~ 110 (167)
.|.+|........+ -.|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666655433322 257788999998754432 1 36888864
No 151
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.52 E-value=5.1 Score=25.69 Aligned_cols=41 Identities=24% Similarity=0.683 Sum_probs=22.6
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 114 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~ 114 (167)
..|+.|....... =++.+|..|-...... ..||-|.+++..
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-ALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-EECSSSCSCCCE
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-ccCcchhhHHHH
Confidence 4688887664321 1133466665443332 378888777753
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.19 E-value=32 Score=20.13 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=24.0
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888877766544444566666666 35777877664
No 153
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.96 E-value=52 Score=23.11 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.-+.|..|...+.......=|..||..|..+.+ ...|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 347788887776543233457789999876643 356777777664
No 154
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.61 E-value=30 Score=20.30 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 68 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 68 ~~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
...|..|...+...++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 356888887766544444566666666 35778877665
No 155
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.13 E-value=22 Score=27.13 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=23.5
Q ss_pred CcccccccCCCcc---eeCCCCCcccHhhHHHhccc-----CCccccccc
Q 031028 69 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIR-----SQSCPFCRD 110 (167)
Q Consensus 69 ~~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~-----~~~CP~Cr~ 110 (167)
..|.+|....... ..-.|...||..|+.+=+.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887643222 22368888999999854322 226999964
No 156
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.81 E-value=40 Score=24.06 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=23.1
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
+.|..|...+.......=|..||..|..+. ....|..|..+|.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccC
Confidence 445555444332211223455677776543 3467888888775
No 157
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.01 E-value=4 Score=27.12 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=28.0
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 115 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~ 115 (167)
..|+.|....... =++.+|..|-.. +.....||.|.+++..+
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHHHH
Confidence 7899998664321 234457777543 33456899999988754
No 158
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.80 E-value=53 Score=19.25 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=24.5
Q ss_pred CcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+-|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 568888877663 44444666677666 35778877664
No 159
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.44 E-value=2.2 Score=26.45 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCCCcCCCcc
Q 031028 140 LRRLFLYIDKLPLIIPDNL 158 (167)
Q Consensus 140 ~~r~~~~i~~lp~~~~~~~ 158 (167)
.++.|--.+.+|.+++|..
T Consensus 32 cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2jr6_A 32 AKLAYPIKDGIPYMLENEA 50 (68)
T ss_dssp TTEEEEEETTEECCCTTTC
T ss_pred CCcEecCCCCeeeeChhhc
Confidence 3445555566777777543
No 160
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.23 E-value=43 Score=21.15 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCCcccccccCCCcc-eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 67 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~-~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
.-+.|..|...+... ....=|..||..|..+ .....|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 346788887776432 3344577789998744 34568999988776
No 161
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.11 E-value=30 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.295 Sum_probs=18.5
Q ss_pred eeCCCCCcccHhhHHHhcccCC-cccccccccccc
Q 031028 82 VLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLKRV 115 (167)
Q Consensus 82 ~~~~CgH~fc~~Ci~~w~~~~~-~CP~Cr~~i~~~ 115 (167)
....|||.|-. ..... .||.|..+...+
T Consensus 75 ~C~~CG~~~e~------~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 75 ECKDCSHVFKP------NALDYGVCEKCHSKNVII 103 (119)
T ss_dssp ECSSSSCEECS------CCSTTCCCSSSSSCCCEE
T ss_pred EcCCCCCEEeC------CCCCCCcCccccCCCcEE
Confidence 45678887754 23346 899998875443
No 162
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=22.62 E-value=53 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=18.6
Q ss_pred CcccccccCCCc-ceeCC--CCCcccHh
Q 031028 69 EECGICMETNSK-IVLPN--CNHAMCLK 93 (167)
Q Consensus 69 ~~C~IC~~~~~~-~~~~~--CgH~fc~~ 93 (167)
..|..|.....+ -..+. |||.+|..
T Consensus 26 ~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 26 GTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CcCcCcCCCCCCceeeecccCCCcccCC
Confidence 579999855444 57787 99999954
No 163
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.57 E-value=45 Score=20.14 Aligned_cols=37 Identities=14% Similarity=0.384 Sum_probs=25.0
Q ss_pred CcccccccCCC--cceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+. +.++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 47888887766 444444566677666 46888887765
No 164
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.39 E-value=25 Score=31.56 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=32.5
Q ss_pred CCCcccccccCCCcc----------eeCCCCCcc--------------------cHhhHHHhccc--------CCccccc
Q 031028 67 REEECGICMETNSKI----------VLPNCNHAM--------------------CLKCYREWRIR--------SQSCPFC 108 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~----------~~~~CgH~f--------------------c~~Ci~~w~~~--------~~~CP~C 108 (167)
+--.|+-|+....+| -.++||-.| |..|-.++-.- -..||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 446899998664332 556788776 99999887531 2499999
Q ss_pred ccccc
Q 031028 109 RDSLK 113 (167)
Q Consensus 109 r~~i~ 113 (167)
--.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 76554
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.33 E-value=36 Score=20.37 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=24.1
Q ss_pred CcccccccCCCc----ceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~----~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888877664 44444566677666 35777877664
No 166
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.26 E-value=43 Score=20.11 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=24.0
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+....+..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 46777777665544445566666666 35788887764
No 167
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.05 E-value=46 Score=19.93 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=19.9
Q ss_pred CCCcccccccCCCcc----eeC-CCCCcccHhhHH
Q 031028 67 REEECGICMETNSKI----VLP-NCNHAMCLKCYR 96 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~----~~~-~CgH~fc~~Ci~ 96 (167)
....|++|.....+. ..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456899999875432 222 677779999983
No 168
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.89 E-value=22 Score=20.92 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCCcccccccCCCccee--CC--CC-CcccHhhHHHhc--ccCCccccccc
Q 031028 67 REEECGICMETNSKIVL--PN--CN-HAMCLKCYREWR--IRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~--~~--Cg-H~fc~~Ci~~w~--~~~~~CP~Cr~ 110 (167)
+...| +|........+ -. |. ..||..|+.--. ...-.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44556 88875432211 13 55 579999986111 12237888864
No 169
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=19 Score=22.51 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=24.8
Q ss_pred cccccccCCCcc---eeCCCCCcccHhhHHHhccc-----CCccccccc
Q 031028 70 ECGICMETNSKI---VLPNCNHAMCLKCYREWRIR-----SQSCPFCRD 110 (167)
Q Consensus 70 ~C~IC~~~~~~~---~~~~CgH~fc~~Ci~~w~~~-----~~~CP~Cr~ 110 (167)
.|.+|....... .--.|...||..|+.+=+.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887543322 22367888999998743321 226787753
No 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=31 Score=20.99 Aligned_cols=37 Identities=24% Similarity=0.556 Sum_probs=22.9
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+-|...+...++..-+..||..| .+|..|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 46777776655544444555566555 46888887665
No 171
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.47 E-value=41 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=22.8
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+-|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 46777877665444444555566655 35777877664
No 172
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=21.46 E-value=45 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.510 Sum_probs=19.2
Q ss_pred CcccccccCCC---------c-ceeCCCCCcccHhhHHH
Q 031028 69 EECGICMETNS---------K-IVLPNCNHAMCLKCYRE 97 (167)
Q Consensus 69 ~~C~IC~~~~~---------~-~~~~~CgH~fc~~Ci~~ 97 (167)
..|.+|+.... + ..-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35888886531 1 23346889999999864
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.04 E-value=32 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=23.5
Q ss_pred CcccccccCCCcceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+...++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 36888887766544444566666665 35777877654
No 174
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.83 E-value=46 Score=20.51 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCCcccccccCCCccee---C--CCCCcccHhhHHHhcc---------cCCcccccccc
Q 031028 67 REEECGICMETNSKIVL---P--NCNHAMCLKCYREWRI---------RSQSCPFCRDS 111 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~---~--~CgH~fc~~Ci~~w~~---------~~~~CP~Cr~~ 111 (167)
....| ||......... - .|..-||..|+.--.. ..-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45677 79876433322 2 5888899999853211 24589999763
No 175
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.47 E-value=24 Score=20.78 Aligned_cols=43 Identities=19% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCCcccccccCCCcceeC--C--CC-CcccHhhHHHhc--ccCCccccccc
Q 031028 67 REEECGICMETNSKIVLP--N--CN-HAMCLKCYREWR--IRSQSCPFCRD 110 (167)
Q Consensus 67 ~~~~C~IC~~~~~~~~~~--~--Cg-H~fc~~Ci~~w~--~~~~~CP~Cr~ 110 (167)
+...| ||........+. . |. ..||..|+.--. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34556 898754322221 3 44 569999986110 12237888854
No 176
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.35 E-value=24 Score=23.18 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.1
Q ss_pred CCcccccccccc
Q 031028 102 SQSCPFCRDSLK 113 (167)
Q Consensus 102 ~~~CP~Cr~~i~ 113 (167)
...||+|.+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999988776
No 177
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.22 E-value=69 Score=19.29 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=23.4
Q ss_pred CcccccccCCC--cceeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028 69 EECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 113 (167)
Q Consensus 69 ~~C~IC~~~~~--~~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~ 113 (167)
..|+.|...+. ..++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccC
Confidence 46888887766 334433466666666 35778877665
No 178
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.10 E-value=7.3 Score=18.77 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=7.5
Q ss_pred ccHhhHHHhcc
Q 031028 90 MCLKCYREWRI 100 (167)
Q Consensus 90 fc~~Ci~~w~~ 100 (167)
||..|-.+|+.
T Consensus 7 fcetcskpwlv 17 (26)
T 1loi_A 7 FCETCSKPWLV 17 (26)
T ss_dssp HHHTSSCTTGG
T ss_pred HHHhcCCchhh
Confidence 67777777753
No 179
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.02 E-value=90 Score=18.14 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=18.2
Q ss_pred CcccccccCCCc--ceeCCCCCcccHhhHHHhcccCCccccccccc
Q 031028 69 EECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112 (167)
Q Consensus 69 ~~C~IC~~~~~~--~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i 112 (167)
..|+.|...+.. .++..-+..||..| ..|-.|..++
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBC
T ss_pred CCCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcC
Confidence 456666665442 23333455555555 2455665555
Done!