BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031029
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2APJ|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|B Chain B, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|C Chain C, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
pdb|2APJ|D Chain D, X-Ray Structure Of Protein From Arabidopsis Thaliana
At4g34215 At 1.6 Angstrom Resolution
Length = 260
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 127/166 (76%), Gaps = 3/166 (1%)
Query: 1 MSFANAVVARAEGER--VGLVPCAVGGTAIKEWARGEELYESMVARSKESVNKSGGRIKA 58
M+FANAV R E + +GLVPCA GGTAIKEW RG LYE MV R++ES K GG IKA
Sbjct: 96 MAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEES-RKCGGEIKA 154
Query: 59 LLWYQGESDASTDHDAEAYQQNMEAFISNVREDLELPSLPIIQVALASGDKYKEKVREAQ 118
+LWYQGESD HDAE+Y NM+ I N+R DL LPSLPIIQVA+ASG Y +KVREAQ
Sbjct: 155 VLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGGYIDKVREAQ 214
Query: 119 LGINLQNVVCVDAKGLHLKEDHLHLTTEAQVKLGHMLAEAYLKHFV 164
LG+ L NVVCVDAKGL LK D+LHLTTEAQV+LG LA+AYL +F
Sbjct: 215 LGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLSNFC 260
>pdb|1ZMB|A Chain A, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|B Chain B, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|C Chain C, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|D Chain D, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|E Chain E, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
pdb|1ZMB|F Chain F, Crystal Structure Of The Putative Acetylxylan Esterase
From Clostridium Acetobutylicum, Northeast Structural
Genomics Target Car6
Length = 290
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 2 SFANAVVARAEGERVGLVPCAVGGTAIKEWARGEELYESMVARSKESVNKSGGRIKALLW 61
SFA+A + + + +GL+PCA GG++I EWA L+ + +K + S + +LW
Sbjct: 59 SFADAWSQKNQEDIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAXESS--ELTGILW 116
Query: 62 YQGESDASTDHDAEAYQQNMEAFISNVREDLELPSLPIIQVALASGD------------K 109
+QGESD S + + + Y + + I +R++L +P +PII L GD +
Sbjct: 117 HQGESD-SLNGNYKVYYKKLLLIIEALRKELNVPDIPIIIGGL--GDFLGKERFGKGCTE 173
Query: 110 YKEKVREAQ-LGINLQNVVCVDAKGLHLKEDHLHLTTEAQVKLGHMLAEAYL 160
Y +E Q N V A GL D +H+ +Q K G EA+
Sbjct: 174 YNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHIDAISQRKFGLRYFEAFF 225
>pdb|2R76|A Chain A, Crystal Structure Of The Rare Lipoprotein B (So_1173) From
Shewanella Oneidensis, Northeast Structural Genomics
Consortium Target Sor91a
pdb|2R76|B Chain B, Crystal Structure Of The Rare Lipoprotein B (So_1173) From
Shewanella Oneidensis, Northeast Structural Genomics
Consortium Target Sor91a
Length = 152
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 101 QVALASGDKYKEKVREAQLGINLQNVVCVDAKG----LHLKEDHLHLTTEAQVKLGHMLA 156
Q++L+S D+YKE R + + L NV VDA L L D L +T + G++ A
Sbjct: 17 QLSLSSSDEYKELTRLVRERLRLNNVKIVDAANDVPVLRLITDSLERSTLSLYPTGNV-A 75
Query: 157 EAYLKHFV 164
E L +FV
Sbjct: 76 EYELIYFV 83
>pdb|2YSK|A Chain A, Crystal Structure Of A Hypothetical Protein Ttha1432 From
Thermus Thermophilus
Length = 145
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 78 QQNMEAFISNVREDLELPSLPIIQVALASGDKYKEKVREAQLGINLQNVVCVDAKGL 134
+++ EAF+++V E+L+ PS P + A+ +K RE G L++V+ + K L
Sbjct: 83 ERHKEAFLAHVAEELKTPSGPAVDPEAATRAVFKVLSREISQG-ELEDVLGLLPKEL 138
>pdb|3SAS|A Chain A, Mutm Slanted Complex 4 With R112a Mutation
pdb|3SAT|A Chain A, Mutm Slanted Complex 6 With R112a Mutation
pdb|3SAW|A Chain A, Mutm Slanted Complex 8 With R112a Mutation
Length = 273
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|3JR4|A Chain A, Mutm Interrogating An Extrahelical G
pdb|3JR5|A Chain A, Mutm Lesion Recognition Control Complex With N174c
Crosslinking Site
Length = 273
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|3GPY|A Chain A, Sequence-Matched Mutm Lesion Recognition Complex 3 (Lrc3)
pdb|3GQ4|A Chain A, Sequence-matched Mutm Lesion Recognition Complex 5 (lrc5)
Length = 273
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|2F5N|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling A:t Base Pair
Ic1
pdb|2F5O|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling G:c Base Pair
Ic3
pdb|2F5P|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling A:t Base Pair
Ic2
Length = 274
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 201 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 238
>pdb|4G4R|A Chain A, Mutm Containing F114a Mutation Bound To Oxog-containing
Dna
Length = 273
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|1R2Y|A Chain A, Mutm (Fpg) Bound To 8-Oxoguanine (Oxog) Containing Dna
pdb|1R2Z|A Chain A, Mutm (Fpg) Bound To 5,6-Dihydrouracil (Dhu) Containing Dna
Length = 274
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 201 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 238
>pdb|3GPP|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec3- T224p Complex
pdb|3GQ5|A Chain A, Sequence-Matched Mutm Interrogation Complex 5 (Ic5)
Length = 273
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRPYVNTQGEAGTFQHH 237
>pdb|4G4O|A Chain A, Mutm Containing M77a Mutation Bound To Oxog-containing Dna
Length = 273
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|3SAR|A Chain A, Mutm Slanted Complex 1
pdb|3SAU|A Chain A, Mutm Interrogation Complex 6
pdb|3SAV|A Chain A, Mutm Slanted Complex 8
Length = 273
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|2F5Q|A Chain A, Catalytically Inactive (E3q) Mutm Crosslinked To Oxog:c
Containing Dna Cc2
pdb|2F5S|A Chain A, Catalytically Inactive (e3q) Mutm Crosslinked To Oxog:c
Containing Dna Cc1
Length = 274
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 201 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 238
>pdb|4G4Q|A Chain A, Mutm Containing F114a Mutation Bound To Undamaged Dna
Length = 273
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|4G4N|A Chain A, Mutm Containing M77a Mutation Bound To Undamaged Dna
Length = 273
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 200 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 237
>pdb|1L1T|A Chain A, Mutm (Fpg) Bound To Abasic-Site Containing Dna
pdb|1L1Z|A Chain A, Mutm (Fpg) Covalent-Dna Intermediate
pdb|1L2B|A Chain A, Mutm (Fpg) Dna End-Product Structure
pdb|1L2C|A Chain A, Mutm (Fpg)-Dna Estranged Thymine Mismatch Recognition
Complex
pdb|1L2D|A Chain A, Mutm (fpg)-dna Estranged Guanine Mismatch Recognition
Complex
Length = 274
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 35 EELYESMVARSKESVNKSGGRIKALLWYQGESDASTDH 72
E L+E MVA E+V K G ++ + QGE+ H
Sbjct: 201 ERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHH 238
>pdb|1VPQ|A Chain A, Crystal Structure Of A Duf72 Family Protein (tm1631) From
Thermotoga Maritima Msb8 At 2.20 A Resolution
Length = 273
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 51 KSGGRIKALLWYQGESDASTDHDAEAYQQNMEAFISNVREDLELPSLPIIQVALASGDKY 110
K+ G + +LW +G+ D E + + +E I R + L P +Y
Sbjct: 84 KTPGSVTHVLWKEGKDPKE---DMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEY 140
Query: 111 KEKVREA 117
EK+RE+
Sbjct: 141 LEKLRES 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,715
Number of Sequences: 62578
Number of extensions: 183344
Number of successful extensions: 439
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 27
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)