BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031030
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 12 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
L LPPGFRFHPTD+ELV YL RK LP II EVD+ K DPWDLP A+E Y
Sbjct: 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 69 FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
FF+ R+ KYPNG+R NRA G+GYWKATG DK +A RG + +G+KK LVFY GK P G +
Sbjct: 73 FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRG-RTLGIKKALVFYAGKAPRGVK 130
Query: 129 TDWIMHEYRL 138
TDWIMHEYRL
Sbjct: 131 TDWIMHEYRL 140
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
L LPPGFRF+PTDEEL+VQYL RK +I E+D+ K DPW LP +E Y
Sbjct: 18 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 69 FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
FFS R+ KYPNG+R NR GSGYWKATG DK I+T Q VG+KK LVFY GK P G++
Sbjct: 78 FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 135
Query: 129 TDWIMHEYRLV 139
T+WIMHEYRL+
Sbjct: 136 TNWIMHEYRLI 146
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
L LPPGFRF+PTDEEL+VQYL RK +I E+D+ K DPW LP +E Y
Sbjct: 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 69 FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
FFS R+ KYPNG+R NR GSGYWKATG DK I+T Q VG+KK LVFY GK P G++
Sbjct: 75 FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 132
Query: 129 TDWIMHEYRLV 139
T+WIMHEYRL+
Sbjct: 133 TNWIMHEYRLI 143
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 33.9 bits (76), Expect = 0.049, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 20 FHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPW-DLPGDVAQERYFFSTREAK 76
FH E+ VQ+ F+ PLP ++ V V K+D LPGD+A E+ R AK
Sbjct: 473 FHLRHEDGSVQF-----FSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAK 525
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 8 KNGVLRLPPGFRFHPTDEELVVQYLKRK 35
+N LR FHPTD+E V+ Y KR+
Sbjct: 585 ENPALRQLRDLHFHPTDKEEVIAYSKRQ 612
>pdb|1RBL|M Chain M, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|I Chain I, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|N Chain N, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|J Chain J, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|O Chain O, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|K Chain K, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|P Chain P, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
pdb|1RBL|L Chain L, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
Length = 109
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 3 KIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGD 62
+I++M F H EE K +FAC P ++ EV C+S+ D
Sbjct: 28 QIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIR 87
Query: 63 VA 64
VA
Sbjct: 88 VA 89
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 32 LKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAK---YPNGNRSNRATG 88
+ ++ P P I ++++ D W L DV + REA +P G
Sbjct: 14 IATRVNGTPPPEVPIADIELGSLDFWALDDDVRDGAFATLRREAPISFWPTIELPGFVAG 73
Query: 89 SGYWKATGLDKQIATSRGNQI 109
+G+W T D SR I
Sbjct: 74 NGHWALTKYDDVFYASRHPDI 94
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 85 RATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIM 133
+ G G + T L +++ATSR I ++K + K P+ +R +M
Sbjct: 36 KILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,628,752
Number of Sequences: 62578
Number of extensions: 235749
Number of successful extensions: 390
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 10
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)