Query 031030
Match_columns 167
No_of_seqs 106 out of 869
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.4E-55 2.5E-59 338.8 11.6 154 9-164 10-168 (174)
2 1ut7_A No apical meristem prot 100.0 2.6E-54 8.8E-59 335.2 11.2 159 1-164 4-165 (171)
3 1cmb_A Met APO-repressor; DNA- 51.3 20 0.00069 24.2 4.0 38 21-62 50-87 (104)
4 1ldd_A APC2WHB, anaphase promo 33.5 21 0.00072 23.1 1.9 27 14-41 36-63 (74)
5 3dz1_A Dihydrodipicolinate syn 19.3 37 0.0013 27.4 1.2 20 11-32 106-125 (313)
6 3fkr_A L-2-keto-3-deoxyarabona 18.8 50 0.0017 26.6 1.9 22 11-32 107-130 (309)
7 1f6k_A N-acetylneuraminate lya 18.8 40 0.0014 26.8 1.3 21 11-32 103-123 (293)
8 2ehh_A DHDPS, dihydrodipicolin 18.7 40 0.0014 26.8 1.3 21 11-32 99-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 18.7 40 0.0014 26.8 1.3 21 11-32 100-120 (292)
10 3cpr_A Dihydrodipicolinate syn 18.3 41 0.0014 27.0 1.3 21 11-32 115-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.4e-55 Score=338.78 Aligned_cols=154 Identities=56% Similarity=0.974 Sum_probs=131.0
Q ss_pred CCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCccc---CCceEEeecccccCCCCCCCcc
Q 031030 9 NGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNR 85 (167)
Q Consensus 9 ~~~~~LppG~rF~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~~~g~r~~R 85 (167)
...+.|||||||+|||||||.|||++|+.|.++|.++|+++|||++|||+||+.. +.+||||+++.+|+++|.|.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 4578999999999999999999999999999999999999999999999999864 4789999999999999999999
Q ss_pred cCCcceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCCcc--CCCCCCcchhheeccee
Q 031030 86 ATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQ--KKNLPRPQLWQRTIGFY 163 (167)
Q Consensus 86 ~~~~G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 163 (167)
++++|+||++|++++|.+ .|.+||+|++|+||.++.+++.+|+|+||||+|.++...+. .....+.++|++|++|.
T Consensus 90 ~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred ecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999975 47899999999999999999999999999999999865432 22234789999999986
Q ss_pred c
Q 031030 164 A 164 (167)
Q Consensus 164 ~ 164 (167)
-
T Consensus 168 K 168 (174)
T 3ulx_A 168 K 168 (174)
T ss_dssp S
T ss_pred c
Confidence 3
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.6e-54 Score=335.24 Aligned_cols=159 Identities=50% Similarity=0.871 Sum_probs=130.5
Q ss_pred CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCccc---CCceEEeecccccC
Q 031030 1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY 77 (167)
Q Consensus 1 m~~~~~~~~~~~~LppG~rF~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~ 77 (167)
|+..+-....++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.. +.+||||+++.+++
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 666655556689999999999999999999999999999999999999999999999999764 57999999999999
Q ss_pred CCCCCCcccCCcceeeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCCccCCCCCCcchhh
Q 031030 78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPRPQLWQ 157 (167)
Q Consensus 78 ~~g~r~~R~~~~G~Wk~~g~~k~I~~~~~g~~iG~k~~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~~~~~ 157 (167)
++|.|.+|++++|+||++|++++|.+ .+.+||+|++|+||.++.+++.+|+|+||||+|.+++. .......++|+
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~---~~~~~~~~~~V 158 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---RNGSTKLDDWV 158 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEE
T ss_pred CCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc---ccCcccCCCEE
Confidence 99999999999999999999999986 46999999999999999999999999999999998862 22334789999
Q ss_pred eecceec
Q 031030 158 RTIGFYA 164 (167)
Q Consensus 158 ~~~~~~~ 164 (167)
+|.++.-
T Consensus 159 lCrv~~k 165 (171)
T 1ut7_A 159 LCRIYKK 165 (171)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999864
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=51.27 E-value=20 Score=24.21 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHhHhCCCCCCcceeeccCCCCCCCCCCcc
Q 031030 21 HPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGD 62 (167)
Q Consensus 21 ~PTDeELi~~YL~~k~~g~~l~~~~I~~~Dvy~~~P~~Lp~~ 62 (167)
|-|..||+..-...-..|+|||. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 56788988877777788999998 488888999999864
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.55 E-value=21 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCCeEECC-ChHHHHHHHHHHhHhCCCC
Q 031030 14 LPPGFRFHP-TDEELVVQYLKRKIFACPL 41 (167)
Q Consensus 14 LppG~rF~P-TDeELi~~YL~~k~~g~~l 41 (167)
.|.|+.|+. |++||- .||..++...-+
T Consensus 36 ~~~~~~~~~it~~eL~-~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLE-GYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHH-HHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhCCeE
Confidence 367899998 888888 599999976644
No 5
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=19.27 E-value=37 Score=27.40 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=14.9
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031030 11 VLRLPPGFRFHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~rF~PTDeELi~~YL 32 (167)
.+-+||- |.||+++|+.||-
T Consensus 106 vlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 106 VMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEECCCT--TCCSHHHHHHHHH
T ss_pred EEECCCC--CCCCHHHHHHHHH
Confidence 4557774 5699999998764
No 6
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=18.81 E-value=50 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=16.0
Q ss_pred ccCCCCCeE--ECCChHHHHHHHH
Q 031030 11 VLRLPPGFR--FHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~r--F~PTDeELi~~YL 32 (167)
.+-+||=|- |.||+++|+.||-
T Consensus 107 vlv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 107 VMAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EEECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEEcCCCCccCCCCCHHHHHHHHH
Confidence 455777332 7899999998764
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=18.76 E-value=40 Score=26.85 Aligned_cols=21 Identities=14% Similarity=0.187 Sum_probs=15.6
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031030 11 VLRLPPGFRFHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~rF~PTDeELi~~YL 32 (167)
.+-+||-| |.||+++|+.||-
T Consensus 103 vlv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 103 LSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34466654 8899999998775
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=18.71 E-value=40 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.6
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031030 11 VLRLPPGFRFHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~rF~PTDeELi~~YL 32 (167)
.+-+||-| |.||+++|+.||-
T Consensus 99 vlv~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 99 ALVVVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34456644 7899999998874
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=18.68 E-value=40 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=15.5
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031030 11 VLRLPPGFRFHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~rF~PTDeELi~~YL 32 (167)
.+-+||-| |.||+++|+.||-
T Consensus 100 vlv~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 100 CLTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34566644 7899999998774
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=18.35 E-value=41 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031030 11 VLRLPPGFRFHPTDEELVVQYL 32 (167)
Q Consensus 11 ~~~LppG~rF~PTDeELi~~YL 32 (167)
.+-+|| |.+.||+++|+.||-
T Consensus 115 vlv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 115 LLVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEECCC-CCCCCCHHHHHHHHH
Confidence 445677 447899999998774
Done!