Query 031031
Match_columns 167
No_of_seqs 117 out of 839
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 3.5E-42 7.6E-47 261.4 18.4 149 8-162 2-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.8E-36 3.8E-41 228.8 19.1 146 10-161 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.6E-17 3.4E-22 120.8 16.4 138 11-159 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 4.9E-14 1.1E-18 102.3 18.6 107 10-130 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 3.1E-14 6.7E-19 105.0 16.3 132 13-159 2-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 5.3E-13 1.2E-17 98.2 16.3 112 12-133 1-113 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 1.5E-12 3.4E-17 94.8 17.2 112 10-132 2-114 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.5 1.7E-12 3.6E-17 95.6 13.5 135 13-160 2-136 (138)
9 cd08865 SRPBCC_10 Ligand-bindi 99.5 5.5E-12 1.2E-16 91.3 15.8 107 13-131 2-109 (140)
10 cd08862 SRPBCC_Smu440-like Lig 99.4 4E-11 8.6E-16 87.2 15.7 107 11-131 2-108 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.4 6.2E-11 1.3E-15 85.9 16.1 109 12-131 2-112 (141)
12 cd07812 SRPBCC START/RHO_alpha 99.4 6.8E-11 1.5E-15 83.4 15.0 112 13-134 2-114 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.3 1.3E-10 2.8E-15 87.5 16.6 113 11-134 2-116 (146)
14 cd07825 SRPBCC_7 Ligand-bindin 99.3 2.2E-10 4.8E-15 84.3 14.2 139 12-159 2-143 (144)
15 cd07814 SRPBCC_CalC_Aha1-like 99.3 2E-10 4.4E-15 83.4 13.7 136 12-159 2-137 (139)
16 cd07820 SRPBCC_3 Ligand-bindin 99.2 4.8E-10 1E-14 82.7 13.3 108 12-131 1-112 (137)
17 cd05018 CoxG Carbon monoxide d 99.2 9.5E-10 2.1E-14 80.3 14.9 111 11-132 2-114 (144)
18 cd07818 SRPBCC_1 Ligand-bindin 99.2 9.8E-10 2.1E-14 81.5 14.3 111 11-133 3-119 (150)
19 cd07817 SRPBCC_8 Ligand-bindin 99.2 1.3E-09 2.9E-14 79.2 13.8 106 12-132 2-107 (139)
20 PRK10724 hypothetical protein; 99.2 1.3E-09 2.8E-14 83.4 14.0 116 5-132 10-125 (158)
21 PF03364 Polyketide_cyc: Polyk 99.2 1.6E-09 3.5E-14 78.5 13.9 103 18-133 1-106 (130)
22 cd07824 SRPBCC_6 Ligand-bindin 99.2 3.6E-09 7.7E-14 78.8 15.8 109 11-132 2-113 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.0 3E-08 6.5E-13 73.8 14.1 113 13-133 2-116 (146)
24 COG3427 Carbon monoxide dehydr 98.8 2E-07 4.2E-12 70.3 12.9 139 12-161 3-145 (146)
25 COG5637 Predicted integral mem 98.7 1E-07 2.2E-12 73.9 9.1 111 7-133 67-179 (217)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.6 8E-07 1.7E-11 65.1 12.0 139 11-160 2-144 (145)
27 PF06240 COXG: Carbon monoxide 98.6 2.2E-06 4.8E-11 63.7 14.2 109 14-133 1-111 (140)
28 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 1.5E-06 3.3E-11 65.7 13.2 133 6-163 7-139 (157)
29 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 5.3E-06 1.1E-10 59.9 13.3 135 11-160 1-135 (136)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 5.1E-05 1.1E-09 56.1 15.6 137 12-160 2-142 (143)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 1.6E-05 3.5E-10 58.5 12.7 134 12-160 2-138 (139)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 1.8E-05 4E-10 57.8 12.5 128 11-160 1-132 (133)
33 cd07826 SRPBCC_CalC_Aha1-like_ 98.3 2.7E-05 5.9E-10 57.7 13.3 139 12-161 2-142 (142)
34 cd08876 START_1 Uncharacterize 98.3 0.00011 2.4E-09 56.9 17.1 146 9-159 40-194 (195)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 0.00016 3.4E-09 53.7 16.7 135 12-160 2-145 (146)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.3 0.00018 3.9E-09 53.4 17.0 134 12-160 2-145 (146)
37 COG2867 Oligoketide cyclase/li 98.2 3.1E-05 6.7E-10 58.2 10.3 112 10-132 2-113 (146)
38 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00024 5.3E-09 52.8 14.0 137 12-160 2-148 (149)
39 PF08327 AHSA1: Activator of H 98.0 0.00031 6.7E-09 49.8 11.9 122 19-159 1-123 (124)
40 cd08901 SRPBCC_CalC_Aha1-like_ 97.8 0.00069 1.5E-08 49.7 11.6 129 12-162 2-133 (136)
41 COG3832 Uncharacterized conser 97.7 0.0037 8.1E-08 47.0 14.1 142 7-160 5-148 (149)
42 cd08892 SRPBCC_Aha1 Putative h 97.6 0.003 6.6E-08 45.8 12.2 122 12-159 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 97.4 0.0035 7.7E-08 46.1 10.5 121 18-160 1-127 (132)
44 cd08863 SRPBCC_DUF1857 DUF1857 96.9 0.1 2.3E-06 39.2 15.2 113 20-154 17-130 (141)
45 cd08874 START_STARD9-like C-te 96.8 0.12 2.6E-06 41.1 15.0 125 10-137 45-182 (205)
46 cd08873 START_STARD14_15-like 96.8 0.19 4.2E-06 40.8 16.1 148 8-162 75-235 (235)
47 cd00177 START Lipid-binding ST 96.1 0.38 8.3E-06 36.2 16.1 123 8-133 37-167 (193)
48 cd08905 START_STARD1-like Chol 96.1 0.4 8.7E-06 37.9 14.1 147 10-160 49-207 (209)
49 PF08982 DUF1857: Domain of un 96.0 0.23 5E-06 37.6 11.6 90 21-131 19-108 (149)
50 cd08870 START_STARD2_7-like Li 96.0 0.6 1.3E-05 36.8 15.1 149 7-161 47-208 (209)
51 cd08871 START_STARD10-like Lip 95.6 0.85 1.8E-05 36.1 14.8 150 10-164 47-205 (222)
52 cd08877 START_2 Uncharacterize 95.3 1.1 2.3E-05 35.4 13.8 146 9-160 45-213 (215)
53 cd08868 START_STARD1_3_like Ch 95.2 1.1 2.5E-05 35.0 15.4 147 11-161 49-207 (208)
54 cd08903 START_STARD5-like Lipi 94.9 1.4 3.1E-05 34.7 15.8 144 12-160 48-206 (208)
55 cd08913 START_STARD14-like Lip 94.5 2.2 4.8E-05 34.7 15.8 118 10-130 81-209 (240)
56 cd08906 START_STARD3-like Chol 94.4 2 4.4E-05 34.0 15.6 144 10-160 49-207 (209)
57 cd08914 START_STARD15-like Lip 94.1 2 4.3E-05 35.0 12.5 118 9-130 77-205 (236)
58 smart00234 START in StAR and p 93.2 3.1 6.7E-05 32.0 17.4 151 8-161 43-202 (206)
59 cd08911 START_STARD7-like Lipi 93.1 3.5 7.7E-05 32.4 15.7 148 7-161 42-206 (207)
60 PF10698 DUF2505: Protein of u 91.4 4.8 0.0001 30.3 12.8 108 13-131 2-128 (159)
61 cd08910 START_STARD2-like Lipi 89.3 9.2 0.0002 30.1 11.9 146 7-160 46-205 (207)
62 COG4276 Uncharacterized conser 88.7 8.6 0.00019 28.9 14.5 140 10-159 2-146 (153)
63 cd08872 START_STARD11-like Cer 82.3 25 0.00053 28.4 15.0 145 11-162 53-227 (235)
64 cd08867 START_STARD4_5_6-like 79.6 27 0.00058 27.1 15.0 143 10-159 46-205 (206)
65 KOG3177 Oligoketide cyclase/li 73.1 22 0.00047 28.7 7.2 106 15-132 73-182 (227)
66 cd08869 START_RhoGAP C-termina 70.8 47 0.001 25.8 15.9 119 9-133 43-170 (197)
67 cd08908 START_STARD12-like C-t 69.0 56 0.0012 25.9 12.1 119 8-133 50-177 (204)
68 PF11485 DUF3211: Protein of u 65.5 55 0.0012 24.5 10.2 40 12-54 3-42 (136)
69 PF01852 START: START domain; 54.9 91 0.002 23.6 17.7 149 8-163 44-204 (206)
70 PRK02103 malonate decarboxylas 51.0 33 0.00072 24.5 4.1 49 9-61 41-90 (105)
71 PRK06628 lipid A biosynthesis 50.5 28 0.00061 28.7 4.4 44 123-166 238-281 (290)
72 PRK01220 malonate decarboxylas 48.3 34 0.00074 24.2 3.8 50 8-61 36-86 (99)
73 TIGR03130 malonate_delta malon 43.1 54 0.0012 23.1 4.2 49 9-61 39-88 (98)
74 PRK06553 lipid A biosynthesis 42.6 41 0.00088 28.0 4.2 44 123-166 257-300 (308)
75 TIGR02208 lipid_A_msbB lipid A 42.2 43 0.00093 27.7 4.3 40 123-166 248-287 (305)
76 cd00222 CollagenBindB Collagen 38.9 74 0.0016 25.0 4.9 72 18-97 3-74 (187)
77 PF11687 DUF3284: Domain of un 38.1 1.5E+02 0.0032 21.2 10.1 102 14-132 3-104 (120)
78 PRK05645 lipid A biosynthesis 37.6 56 0.0012 26.8 4.2 40 123-166 238-277 (295)
79 PRK08733 lipid A biosynthesis 34.4 67 0.0015 26.6 4.3 40 123-166 248-287 (306)
80 PRK08706 lipid A biosynthesis 33.5 64 0.0014 26.4 3.9 40 123-166 232-271 (289)
81 TIGR02207 lipid_A_htrB lipid A 33.0 73 0.0016 26.3 4.2 40 123-166 245-284 (303)
82 PRK06860 lipid A biosynthesis 31.3 81 0.0018 26.1 4.2 40 123-166 251-290 (309)
83 PRK08419 lipid A biosynthesis 30.4 99 0.0021 25.4 4.6 23 144-166 259-281 (298)
84 PRK08734 lipid A biosynthesis 30.0 83 0.0018 26.1 4.1 39 124-166 240-278 (305)
85 PRK08943 lipid A biosynthesis 29.2 92 0.002 25.9 4.2 40 123-166 257-296 (314)
86 PF03000 NPH3: NPH3 family; I 28.2 42 0.00091 27.7 2.0 17 149-165 220-236 (258)
87 cd07984 LPLAT_LABLAT-like Lyso 26.8 1.2E+02 0.0026 22.6 4.2 22 145-166 163-184 (192)
88 PRK05646 lipid A biosynthesis 26.0 1.1E+02 0.0023 25.4 4.1 40 123-166 249-288 (310)
89 PRK08905 lipid A biosynthesis 24.3 1.2E+02 0.0025 25.0 4.0 39 123-166 227-265 (289)
90 cd05845 Ig2_L1-CAM_like Second 23.1 2.5E+02 0.0054 19.3 4.9 44 37-83 2-48 (95)
91 PF03279 Lip_A_acyltrans: Bact 22.4 1.5E+02 0.0032 24.1 4.2 41 122-166 246-286 (295)
92 PF02021 UPF0102: Uncharacteri 22.4 2.6E+02 0.0056 19.0 5.0 66 89-163 14-79 (93)
93 KOG2445 Nuclear pore complex c 22.1 2.1E+02 0.0045 24.7 4.9 76 39-130 230-321 (361)
94 KOG3294 WW domain binding prot 22.0 2.3E+02 0.0051 23.4 5.1 46 103-159 91-136 (261)
95 PF08473 VGCC_alpha2: Neuronal 21.8 1.6E+02 0.0034 20.6 3.5 18 80-97 38-55 (94)
96 PRK06946 lipid A biosynthesis 21.5 1.6E+02 0.0034 24.2 4.2 22 145-166 254-275 (293)
97 PF13410 GST_C_2: Glutathione 21.3 1.2E+02 0.0025 18.6 2.7 23 141-163 4-26 (69)
98 PRK07920 lipid A biosynthesis 20.8 1.3E+02 0.0028 24.8 3.6 39 124-166 236-274 (298)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=3.5e-42 Score=261.37 Aligned_cols=149 Identities=32% Similarity=0.490 Sum_probs=138.9
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcc-eEEEEEEeeCCceeEEEEEEEeecCCCc
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVG-TIKQINYIEGGEIRYTKHRVDALDKEKF 86 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~G-svR~~~~~~g~~~~~~kErl~~~D~~~~ 86 (167)
++++++.++++++||+++|++| ++.++++|+++|+.|++++++||||++| |||.|+|.+|++..++|||++.+|++||
T Consensus 2 ~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 2 GVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp CEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 5789999999999999999997 6688889999999999999999998777 9999999999999999999999999999
Q ss_pred eEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhC
Q 031031 87 MCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAY 162 (167)
Q Consensus 87 ~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 162 (167)
+++|+++||+++.. |++|.+++++.|.++|+|+++|+++|++.+++.|+|+.+ ++++..|+|+||+||++|
T Consensus 81 ~~~y~viEGd~l~~--~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~---~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLGD--YKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKY---LDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGTT--TEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecccccc--EEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999885 999999999999998899999999999999988778887 788999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=1.8e-36 Score=228.83 Aligned_cols=146 Identities=34% Similarity=0.509 Sum_probs=132.6
Q ss_pred eEEEEEEEEecCHHHHHHHHhccccc-ccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceE
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHN-ICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMC 88 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~-l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 88 (167)
++++.+++|+||||+||+++ +||.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++.+++||||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~-~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAF-VLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHH-hcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 47899999999999999995 99984 4456777 899999999999999999999998877789999999999999999
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhh
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKA 161 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 161 (167)
+|++++|+.+.. +|++|+++++|.|.++++|+++|+++|++.++++++|+.+ ++.+..+++++++|++.
T Consensus 79 ~y~vveg~~~~~-~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 79 KYTVIEGDVLKD-GYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEI---KAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEecccccC-ceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHH---HhHHHHHHHHHHHHHhc
Confidence 999999998654 5999999999999977899999999999999988888888 88889999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.79 E-value=1.6e-17 Score=120.81 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=111.2
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
+++.+++|++|+++||+++ .|+.+ +++|+|. +++++++++..++|+++.+.+..| ..+++++..+|+.+++++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALL-SDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHH-hCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEE
Confidence 5688999999999999995 99999 8999995 789998776556899999998766 3788999999988789999
Q ss_pred EEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHH
Q 031031 91 RFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHL 159 (167)
Q Consensus 91 ~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 159 (167)
++.+|+. ++.++.++++|.|.++|+|.++|+.+|++... .+.+..-....+.....++.|.+++
T Consensus 76 ~~~~~~~----~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL----PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC----CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998742 57889999999998877899999999999865 3333333333455566666666654
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.65 E-value=4.9e-14 Score=102.32 Aligned_cols=107 Identities=23% Similarity=0.350 Sum_probs=88.2
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEE
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 89 (167)
.+++.++.|+|||++||+++ .|+.+ +++|+|+ +.++++.+++ ++|..+.++.... ..+++++..+|++++.+.
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLL-SDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHH-TTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEECCCHHHHHHHH-hChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEEE
Confidence 47899999999999999995 99999 9999995 8899987633 4466666664331 378999999998899999
Q ss_pred EEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEe
Q 031031 90 YRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKA 130 (167)
Q Consensus 90 y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 130 (167)
|++. .. ++.++..++++.|.++| |.++|+.+|++
T Consensus 75 ~~~~-~~-----~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV-PS-----GFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEE-SS-----SSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEE-ec-----ceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 9996 21 57789999999998855 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.63 E-value=3.1e-14 Score=105.05 Aligned_cols=132 Identities=11% Similarity=0.145 Sum_probs=93.1
Q ss_pred EEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcce-------EEEEEEeeCCceeEEEEEEEeecCCC
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGT-------IKQINYIEGGEIRYTKHRVDALDKEK 85 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-------vR~~~~~~g~~~~~~kErl~~~D~~~ 85 (167)
..++.|++|+++||++ +.|+.+ +|+|+|+ +++++++++.+. +. .+.+...- ...+..++...++.+
T Consensus 2 ~~~~~i~a~~~~Vw~~-l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 74 (144)
T cd08866 2 VARVRVPAPPETVWAV-LTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKF---EARVVLELREREEFP 74 (144)
T ss_pred eEEEEECCCHHHHHHH-HhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeee---eEEEEEEEEEecCCC
Confidence 5789999999999999 599999 8999995 889998876532 21 11111101 123455566677668
Q ss_pred ceEEEEEEecCCccccCcceEEEEEEEeecCC-CccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHHHHHHHHH
Q 031031 86 FMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQ-GGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMYEVVEAHL 159 (167)
Q Consensus 86 ~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 159 (167)
+++.|++++|+ +..|.+++++.|.++ |+|.++|.++|++... .| ....+. ..+.+..++++|.+.+
T Consensus 75 ~~i~~~~~~g~------~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~p-~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 75 RELDFEMVEGD------FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-AP-VFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred ceEEEEEcCCc------hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-CC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998774 678999999999887 6899999999999763 22 223322 2333456666665543
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.55 E-value=5.3e-13 Score=98.18 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=85.4
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEe-eCCceeEEEEEEEeecCCCceEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYI-EGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
++++++|++|+++||+++ .|+.+ +|+|+|. .+++.++++++...++.+... .|....+ +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l-~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLL-ADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW--TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHH-HhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE--EEEEEEcCCCCEEEE
Confidence 368999999999999995 99999 9999996 456655554332356656665 3332233 344568888889999
Q ss_pred EEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 91 RFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 91 ~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
..+++.. .+..+.++++|+|.++++|.|+|+.+|+....
T Consensus 75 ~~~~~~~----~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPP----PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCC----ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 9987543 47889999999998877899999999999854
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=1.5e-12 Score=94.79 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=82.5
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEEeeCCceeEEEEEEEeecCCCceE
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMC 88 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~ 88 (167)
.+++.++.|+||+++||+++ .|+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVL-ADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHH-hChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 36899999999999999995 99999 9999995 8899987654 3333444455543321111111222 233 6789
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
+|+..+|. +...+.+++++.|.++ +|.|+|+.+|++..
T Consensus 77 ~~~~~~~~-----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 77 SWTLVEGE-----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EEEEeccc-----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 99998875 3778899999999875 79999999999865
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.48 E-value=1.7e-12 Score=95.55 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=96.0
Q ss_pred EEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEE
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRF 92 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~ 92 (167)
+.+++|++|+++||++ +.|+.+ +|+|+|+ +++++++++++ .+....+...-++.......++. +++ .+++++..
T Consensus 2 ~~s~~i~ap~~~v~~~-i~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDL-VADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHH-HHHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 6789999999999999 599999 9999995 88999998775 34444455543332233344544 666 66889998
Q ss_pred EecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 93 IEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 93 ~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
++|. ++.+.+++++.|.++|+|.|+|..+|++.++- +..-.-..+.+....+++++.+.+.
T Consensus 76 ~~g~------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l-~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP------FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL-LEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC------hhhceeEEEEEECCCCCEEEEEEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8873 67789999999998889999999999998631 1111111124444566666665543
No 9
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=5.5e-12 Score=91.27 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=84.8
Q ss_pred EEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
+.++.|++|+++||+++ .|+.+ +|+|.|. +.+++.+.+. .++|+...+....++....+++++..+|+ ++.++|.
T Consensus 2 ~~~~~i~ap~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 2 EESIVIERPVEEVFAYL-ADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred ceEEEEcCCHHHHHHHH-HCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEE
Confidence 67899999999999995 99999 9999996 6788876544 47899888877544333457889998874 5789999
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
...|+ + .+..++++.|.++ +|.++|+.+|+..
T Consensus 78 ~~~~~------~-~~~~~~~~~~~~~-~t~v~~~~~~~~~ 109 (140)
T cd08865 78 GSSGP------F-PYEDTYTFEPVGG-GTRVRYTAELEPG 109 (140)
T ss_pred ecCCC------c-ceEEEEEEEEcCC-ceEEEEEEEEccc
Confidence 86553 2 3688999999764 6999999999973
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.39 E-value=4e-11 Score=87.23 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=80.7
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
+++.+++|+||+++||+++ .|+.+ +|+|+|+ +++++...+..++|+...++...+ ..+..++..+++.+ +++|
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVL-TDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHH-Hhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEE
Confidence 4689999999999999995 99999 9999995 788987654326777666654432 24667788887554 6888
Q ss_pred EEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 91 RFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 91 ~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
+.... ...+..+++|.+.++++|.++|+.+|...
T Consensus 75 ~~~~~-------~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 75 TGPAP-------GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EecCC-------CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 75321 23456799999977678999999988754
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=6.2e-11 Score=85.93 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=82.8
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEEeeC-CceeEEEEEEEeecCCCceEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINYIEG-GEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~ 89 (167)
++.++.|++|+++||+++ .|+.+ +|+|+|. +..++ +. ..+|+...+.+..+ +......+++..+|+. +++.
T Consensus 2 v~~~~~i~ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~---~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~ 74 (141)
T cd07822 2 ISTEIEINAPPEKVWEVL-TDFPS-YPEWNPF-VRSAT---GLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLA 74 (141)
T ss_pred eEEEEEecCCHHHHHHHH-hcccc-ccccChh-heeEe---ccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeE
Confidence 578999999999999995 99999 8999985 55655 33 46788777776533 2334677888888874 5899
Q ss_pred EEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 90 YRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 90 y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
|+...++. ..-....+++|.|.++++|.++|...|...
T Consensus 75 ~~~~~~~~----~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 75 WRGGLPFP----GLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EEecCCCC----cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 99876653 233466899999986678999999888654
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=6.8e-11 Score=83.37 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=87.3
Q ss_pred EEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
+.++.|++|+++||+++ .|+.+ +++|.|+ +.++++.++. ...|....+.+..+ .....+.++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l-~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLL-SDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHH-hChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 57889999999999995 99999 9999996 7888877654 46666666665422 22356778887777 6689999
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCC
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGV 134 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~ 134 (167)
...++. ...+..++++.+.++++|.++|+.+|......
T Consensus 77 ~~~~~~-----~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 77 VTGGGG-----GVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EecCCC-----CcceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 887764 24688999999987658999999999998643
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.35 E-value=1.3e-10 Score=87.54 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=84.2
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEE-eeCCceeEEEEEEEeecCCCceE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINY-IEGGEIRYTKHRVDALDKEKFMC 88 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~ 88 (167)
..+++|+|++||++||++ +.|+.+ +|.|+|. ++++++++++ .+.|.--.+.. ..|....|..|+ .+|+..+++
T Consensus 2 ~~~~si~i~a~~~~v~~l-vaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDM-TNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHH-HHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence 457999999999999999 599999 9999995 7799988765 34553222223 334445565564 478888888
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCC
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGV 134 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~ 134 (167)
.++-...+ ++.....+++|+|.++ ||.|++..+|+..++.
T Consensus 77 ~~~~~~~~-----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 77 RARRVETG-----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEecCC-----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCC
Confidence 87422111 4889999999999865 4999999999987644
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=2.2e-10 Score=84.32 Aligned_cols=139 Identities=16% Similarity=0.105 Sum_probs=91.1
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC--CCcceEEEEEEee-CCceeEEEEEEEeecCCCceE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD--GDVGTIKQINYIE-GGEIRYTKHRVDALDKEKFMC 88 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~ 88 (167)
++.++.|+||+++||+++ .|+.+ +|+|.|... ......++ -.+|+...+.... |++ ..+..++..+++.+ ++
T Consensus 2 i~~~~~i~ap~e~Vw~~l-~d~~~-~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVL-ADPRR-HPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHH-hCccc-cceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EE
Confidence 578999999999999995 99999 999998533 22222333 3788888777654 333 34566778787655 69
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHH
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHL 159 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 159 (167)
+|+..-.+. +......++++.|.++|+|.++++.+|...+....-+...+.........++.|++|+
T Consensus 77 ~~~~~~~~~----~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQ----EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCC----CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 998642111 1233567888999877789999999988764311001111111455567777777765
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.28 E-value=2e-10 Score=83.41 Aligned_cols=136 Identities=17% Similarity=0.082 Sum_probs=90.7
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
+..+++|+||+++||+++ .|+.+ +|+|+|. +..++.....| |+.+.+....++....+..++..+|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRAL-TDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHc-CCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 578899999999999995 99999 9999995 22222111112 676655544332234678888888865 689999
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHH
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHL 159 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 159 (167)
...++. + +.-....+++|.|.+ ++|.++|+.+|...... .+..+.........++..|.+||
T Consensus 76 ~~~~~~-~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDE-T--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCC-C--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 887653 1 244578899999987 57999999999886421 22233233444455555555544
No 16
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=4.8e-10 Score=82.67 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=84.0
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC---CCcceEEEEEEeeCC-ceeEEEEEEEeecCCCce
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD---GDVGTIKQINYIEGG-EIRYTKHRVDALDKEKFM 87 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd---g~~GsvR~~~~~~g~-~~~~~kErl~~~D~~~~~ 87 (167)
++.+++|++|+++||+.+ .|+.+ +|+|+|+ +.++++++.+ ..+|+.-.+++...+ +..| +-++..+++ ++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~-~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~~it~~~p-~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFH-SRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TTEITEVEP-PRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHH-cCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EEEEEEEcC-CCe
Confidence 367899999999999995 99999 9999996 7789987543 255788888876554 3445 444565654 557
Q ss_pred EEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 88 CKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 88 ~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
++++.+.|+ +..+..++.|.|.++ ||.+++.++|+..
T Consensus 76 f~~~~~~G~------~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 76 FVDEQVSGP------FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEEeccCC------chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 999987763 667888999998765 6999999999994
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.22 E-value=9.5e-10 Score=80.32 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=76.1
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCC--ceeEEEEEEEeecCCCceE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGG--EIRYTKHRVDALDKEKFMC 88 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~ 88 (167)
+++.++.+++|+++||+++ .|+.+ +++|+|+ +++++.+++++ ... .++...+. ..-..+-++..+|+. +++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAAL-NDPEV-LARCIPG-CESLEKIGPNE-YEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHh-cCHHH-HHhhccc-hhhccccCCCe-EEE--EEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence 4678999999999999995 99999 9999996 77887665431 111 12222121 111224455555544 577
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
.++....+. . ....+..++++.|. +++|.++|+++|+..+
T Consensus 75 ~~~~~~~~~-~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g 114 (144)
T cd05018 75 TITGEGKGG-A--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG 114 (144)
T ss_pred EEEEEEcCC-C--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence 777654332 1 36689999999998 5789999999999765
No 18
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=9.8e-10 Score=81.50 Aligned_cols=111 Identities=18% Similarity=0.085 Sum_probs=81.1
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceee---EEEE--cCCCCcceEEEEEEeeCCceeEEEEEEEeecCCC
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKS---IEYF--EGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEK 85 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s---~e~~--eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~ 85 (167)
+++.++.|++|+++||+++ .|+.+ +|+|+|. ... ++.. ++..++|+...++...+. .....++..+++ +
T Consensus 3 ~~~~s~~I~ap~e~V~~~i-~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYV-NDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-N 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHH-hCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-C
Confidence 6789999999999999995 99999 9999994 333 2211 233478888777654421 133456666754 5
Q ss_pred ceEEEEEEecCCccccCcc-eEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 86 FMCKYRFIEGDGFIDSMLE-FLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 86 ~~~~y~~~eG~~~~~~~~~-~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
+++.|+...++. +. .+..+++|.|.+ +||.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~-----~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKP-----FEATNDVEFTLEPVG-GGTKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCC-----ccccceEEEEEEEcC-CceEEEEEEEecCCch
Confidence 689999986543 42 678999999984 6799999999997653
No 19
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.18 E-value=1.3e-09 Score=79.21 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=77.5
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
++.+++|++|+++||+++ .|+.+ +|+|.|+ +++++++.+. +.-..+.+..|.. .....++..+++ ++.+.|.
T Consensus 2 v~~~i~I~ap~e~V~~~~-~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~ 73 (139)
T cd07817 2 VEKSITVNVPVEEVYDFW-RDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWR 73 (139)
T ss_pred eeEEEEeCCCHHHHHHHH-hChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEE
Confidence 578999999999999995 99999 9999995 8888876542 2222233322333 344555555544 5569998
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
...|. + .+.++++|.|.++++|.+++++.|++..
T Consensus 74 ~~~~~------~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 74 SVEGA------D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred ECCCC------C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 76653 3 5678999999776789999999999875
No 20
>PRK10724 hypothetical protein; Provisional
Probab=99.17 E-value=1.3e-09 Score=83.37 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=88.7
Q ss_pred cccceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCC
Q 031031 5 MDENTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKE 84 (167)
Q Consensus 5 ~~~~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~ 84 (167)
|.+...++..++.+++|++++|++ +.|..+ +|+|+|. .+++++++.++. +.+..++.+-++-......|.. +++.
T Consensus 10 ~~~~M~~i~~~~~v~~s~~~v~~l-v~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~ 84 (158)
T PRK10724 10 MEIVMPQISRTALVPYSAEQMYQL-VNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSN 84 (158)
T ss_pred ccCcCCeEEEEEEecCCHHHHHHH-HHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCC
Confidence 445666889999999999999999 599999 9999995 778888876542 3344455543332334444544 5554
Q ss_pred CceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 85 KFMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 85 ~~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
+ ++.+.+++|+ ++.+.+.++|.|.++++|.|++..+|+...
T Consensus 85 ~-~I~~~~~~Gp------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 85 Q-SILMQLVDGP------FKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred C-EEEEEecCCC------hhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 4 8999999883 788999999999887789999999999765
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.17 E-value=1.6e-09 Score=78.45 Aligned_cols=103 Identities=23% Similarity=0.429 Sum_probs=75.0
Q ss_pred EecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeC-CceeEEEEEEEeecCCCceEEEEEEecC
Q 031031 18 TQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEG-GEIRYTKHRVDALDKEKFMCKYRFIEGD 96 (167)
Q Consensus 18 i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y~~~eG~ 96 (167)
|+||+++||+++ .|+.+ +|.|+|. ++++++++.++. +..-.+....+ .+..+ ..++. .+...+ +.+..++|+
T Consensus 1 V~ap~~~V~~~i-~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~g~ 73 (130)
T PF03364_consen 1 VNAPPEEVWSVI-TDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSW-TSRVT-EDPPER-IRFEQISGP 73 (130)
T ss_dssp ESS-HHHHHHHH-TTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEE-EEEEE-EECTTT-EEEESSETT
T ss_pred CCCCHHHHHHHH-HHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEE-EEEEE-EEEeee-eeeeecCCC
Confidence 689999999995 99999 9999995 889999988754 43335555543 33444 44544 344444 777777664
Q ss_pred CccccCcceEEEEEEEeecCC--CccEEEEEEEEEecCC
Q 031031 97 GFIDSMLEFLTHEIKFEGYGQ--GGCVCKITCDFKAKEG 133 (167)
Q Consensus 97 ~~~~~~~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~ 133 (167)
++.+.+++++.|.++ |||.++++.+|+....
T Consensus 74 ------~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 74 ------FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp ------EEEEEEEEEEEEETTECCEEEEEEEEEEEEETS
T ss_pred ------chhcEEEEEEEECCCCcCCCEEEEEEEEEEecC
Confidence 889999999999874 3688888888887543
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.16 E-value=3.6e-09 Score=78.80 Aligned_cols=109 Identities=14% Similarity=0.231 Sum_probs=78.3
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEc--CCCCcceEEEEEEeeC-CceeEEEEEEEeecCCCce
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFE--GDGDVGTIKQINYIEG-GEIRYTKHRVDALDKEKFM 87 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~e--Gdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~ 87 (167)
+++.+..|++|+++||++ +.|+.+ +|+|+|+ ++++++++ ++.++|+..+++.... +......-++..++ ..+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~-~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~ 77 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDV-LVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSL 77 (146)
T ss_pred cceEEEEecCCHHHHHHH-HhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcE
Confidence 457788999999999999 599999 9999995 88998887 3346777655543322 21123444555554 4568
Q ss_pred EEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 88 CKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 88 ~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
+.|+. +|+. + ...+++|.|.+ +||.|+++.+|+..+
T Consensus 78 ~~~~~-~g~~------~-~~~~~~~~~~~-~gt~vt~~~~~~~~~ 113 (146)
T cd07824 78 LEVRA-SGDL------E-GVGRWTLAPDG-SGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEE-EEee------e-EEEEEEEEEcC-CCEEEEEEEEEEcCH
Confidence 88885 5642 2 26889999965 469999999999854
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.98 E-value=3e-08 Score=73.77 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=71.5
Q ss_pred EEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEE--EEEEEeecCCCceEEE
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYT--KHRVDALDKEKFMCKY 90 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~y 90 (167)
+.++++++|+++||+++ .|+.+ ++.|.|+ +++++..+++ . ....++...|.-.... +=++..+++..+++++
T Consensus 2 ~~~~~v~a~pe~vw~~l-~D~~~-~~~~~pg-~~~~~~~~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALL-LDIER-VAPCLPG-ASLTEVEGDD-E--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHh-cCHHH-HHhcCCC-ceeccccCCC-e--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 57899999999999995 99999 8999996 7777754322 2 2223333322111111 1145556557788887
Q ss_pred EEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 91 RFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 91 ~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
+.-..+.-.. +--....++++.| .+++|.++|+++++..+.
T Consensus 76 ~~~g~~~~~~-g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 76 EATGKDARGQ-GTAEATVTLRLSP-AGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEecCCCc-ceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence 7543111000 1124667888888 446899999999987653
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.81 E-value=2e-07 Score=70.28 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=93.4
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCC--ceeEEEEEEEeecCCCceEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGG--EIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~~ 89 (167)
++.++.|++|+++||+.+ .|+.. +..-+|+ ++|++ .+|+. ..-.+.+.-|. ..-..+=++..+|+..++++
T Consensus 3 ~~G~f~V~~p~e~Vw~~L-~dpe~-~a~ciPG-~qs~e-~~g~e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFL-NDPEQ-VAACIPG-VQSVE-TNGDE---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEecCCHHHHHHHh-cCHHH-HHhhcCC-cceee-ecCCe---EEEEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence 578899999999999995 99999 7899997 99998 45652 22223332221 11123445666788888998
Q ss_pred EEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCC-CcCCchhhH-HhhhhHhhHHHHHHHHHhh
Q 031031 90 YRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG-VEIKGIDIE-LVKHKPLGMYEVVEAHLKA 161 (167)
Q Consensus 90 y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l~~ 161 (167)
.+.-.|. .. .+-+.++.+++.|.+++ |++.|.+.-+-.+. ...-+..++ .+...+..+++.|.++|.+
T Consensus 76 i~g~G~~-~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 76 INGSGGG-AA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred EEeeccc-cc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8886643 44 47888899999998766 99999999877543 112233332 2234446677777776643
No 25
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.72 E-value=1e-07 Score=73.89 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=88.0
Q ss_pred cceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEE--eeCCceeEEEEEEEeecCC
Q 031031 7 ENTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINY--IEGGEIRYTKHRVDALDKE 84 (167)
Q Consensus 7 ~~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~--~~g~~~~~~kErl~~~D~~ 84 (167)
.+--.++.+|+|+.|+++||..+ +|+.+ +|.||-+ +.|+++.+... | +|+. ..|..++|-.|- .-|..
T Consensus 67 ~~~i~v~~~V~I~kPae~vy~~W-~dLe~-lP~~Mkh-l~SVkVlddkr---S--rW~~~ap~g~~v~Wea~i--t~d~~ 136 (217)
T COG5637 67 AKPIEVEVQVTIDKPAEQVYAYW-RDLEN-LPLWMKH-LDSVKVLDDKR---S--RWKANAPLGLEVEWEAEI--TKDIP 136 (217)
T ss_pred cCceEEEEEEEeCChHHHHHHHH-Hhhhh-hhHHHHh-hceeeccCCCc---c--ceeEcCCCCceEEEeehh--hccCC
Confidence 34456889999999999999997 99999 8999985 99999876643 3 4444 345557776653 46789
Q ss_pred CceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 85 KFMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 85 ~~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
+..+.|.=++|.-++. ++.++|.+..+..|.|+.+++|.+.++
T Consensus 137 ~e~I~W~Sl~Ga~v~N------sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 137 GERIQWESLPGARVEN------SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CcEEeeecCCCCcCCC------CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 9999999999966553 368899888877789999999998765
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.65 E-value=8e-07 Score=65.09 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=81.1
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
.++.++.|+||+++||+++ .|+.. +++|.|... ....-+.+..| .+++..+ ......=++..+++. +++.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~-~~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPP-RRFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeCCC-cEEEE
Confidence 5788999999999999996 99999 899998532 11111222223 2333221 101334466667554 47788
Q ss_pred EEEecCC---ccccCcceEEEEEEEeecCCCccEEEEEEE-EEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 91 RFIEGDG---FIDSMLEFLTHEIKFEGYGQGGCVCKITCD-FKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 91 ~~~eG~~---~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
+...+.. .+.+.-.....+++|.+.+ ++|.++++.. |...+.... ........+....++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhc
Confidence 8643320 0000122356888899976 5699999877 433221100 11222335666788888888875
No 27
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.64 E-value=2.2e-06 Score=63.73 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=67.5
Q ss_pred EEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCC-c-eeEEEEEEEeecCCCceEEEE
Q 031031 14 QSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGG-E-IRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 14 ~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~-~-~~~~kErl~~~D~~~~~~~y~ 91 (167)
.+++|++|+++||++| .|..+ +-+-+|+ +++++.+. +.-.+. ++..-|. + .-..+=++..+|+.++.. .+
T Consensus 1 Gs~~v~a~~~~vw~~l-~D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~ 72 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFL-SDPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LE 72 (140)
T ss_dssp EEEEECS-HHHHHHHH-T-HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EE
T ss_pred CcEEecCCHHHHHHHh-cCHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-ee
Confidence 3689999999999996 99999 7899997 88988775 421122 2222221 1 112333455677777542 44
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
+-..+. . .-.+..+++++...++++|.+.|+++++..+-
T Consensus 73 ~~g~g~-~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 73 FEGRGR-G--GGSSASANITLSLEDDGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEEEC-T--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred eeccCC-c--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence 332232 1 24456677777665555699999999998663
No 28
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.63 E-value=1.5e-06 Score=65.65 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=90.7
Q ss_pred ccceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCC
Q 031031 6 DENTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEK 85 (167)
Q Consensus 6 ~~~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~ 85 (167)
.+|..++..++.|++|+++||++| .|+.+ +++|.|. . ..+-.+|....+.+...+. ....-++..+|+.
T Consensus 7 ~~~~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~- 75 (157)
T cd08899 7 LDGGATLRFERLLPAPIEDVWAAL-TDPER-LARWFAP-G------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP- 75 (157)
T ss_pred cCCCeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCC-C------CCCcccCceEEEEecCCCC-CccceEEEEEcCC-
Confidence 477889999999999999999996 99999 8999983 2 1233455555555543111 2345677777665
Q ss_pred ceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCC
Q 031031 86 FMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYP 163 (167)
Q Consensus 86 ~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 163 (167)
+++.|+...++ . ....+++|.+.+ ++|.++.+.++.+.. +......++...++..|.+|+-+.+
T Consensus 76 ~~l~~~~~~~~--~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 76 RLLAFTWGEGG--G-----ESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred cEEEEEecCCC--C-----CceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 47888875443 1 235677788765 678888888876543 1122236777888889988887665
No 29
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.53 E-value=5.3e-06 Score=59.94 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=80.4
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEE
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
|++.++.|+||+++||+++ .|... +++|.+... .+++-.+|.--.+....... ..+.=++..++ .++++.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~-td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQAL-TDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHH-cCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence 4678999999999999996 99999 899998522 12332344432333332111 12334556665 4556777
Q ss_pred EEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 91 RFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 91 ~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
+...++..+...-.....++.+.|.+ ++|.++.+.+-...+ +...+...+....+++.|.+||-
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecC-CcEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 76533321000123567788888865 467766665543221 22343446777888888888873
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=5.1e-05 Score=56.09 Aligned_cols=137 Identities=19% Similarity=0.148 Sum_probs=80.2
Q ss_pred EEEEEEEecCHHHHHHHHhccccccccccccc-ceeeEEEEcCCCCcceEEEEEEe-eCCceeEEEEEEEeecCCCceEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFS-SIKSIEYFEGDGDVGTIKQINYI-EGGEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~-~v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 89 (167)
+..+..++||+++||+++ .|... +.+|+.. .--.+...+.+-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~-tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAW-SDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHh-cCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence 456678999999999996 89998 7888853 11123333344344444333332 2333223334566676554 666
Q ss_pred EEEE--ecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 90 YRFI--EGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 90 y~~~--eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
|+.. .++. +-.....++.|.+.+ |+|.++.+..+-..++. +......++...++..|+++|.
T Consensus 79 ~t~~~~~~~~----~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGT----LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCc----cccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 6643 2221 122345788888875 67998888776432221 1122236777888888888874
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.37 E-value=1.6e-05 Score=58.55 Aligned_cols=134 Identities=13% Similarity=0.001 Sum_probs=76.8
Q ss_pred EEEEEEEecCHHHHHHHHhccccccccccc-ccceeeEEEEcCCCCcceEEEEEE-eeCCceeEEEEEEEeecCCCceEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLL-FSSIKSIEYFEGDGDVGTIKQINY-IEGGEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~-P~~v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 89 (167)
++.+..++||+++||+++ .|... +.+|+ |+.+. +...+.+-.+|..-.+.+ .+++..-...=++.++++.+ ++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 567889999999999996 89887 77886 33232 222233333344333333 22232112233667786554 778
Q ss_pred EEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchh-hHHhhhhHhhHHHHHHHHHh
Q 031031 90 YRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGID-IELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 90 y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~-~~~~~~~~~~~~k~ie~~l~ 160 (167)
|+...++ .. ...+++|.|.+ ++|.++.+..|..... . ... ..-..+....++..|++||.
T Consensus 78 ~t~~~~~-----~~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~--~-~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP-----PR--FRLTVTFEEQG-GKTRLTWRQVFPTAAE--R-CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC-----Cc--EEEEEEEEECC-CCEEEEEEEEcCCHHH--H-HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 8764332 12 45788998875 6799888876532110 0 000 11123455777888888874
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.35 E-value=1.8e-05 Score=57.85 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=76.7
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceee--EEEEcCCCCcceEEEEEE-eeCCc-eeEEEEEEEeecCCCc
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKS--IEYFEGDGDVGTIKQINY-IEGGE-IRYTKHRVDALDKEKF 86 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s--~e~~eGdg~~GsvR~~~~-~~g~~-~~~~kErl~~~D~~~~ 86 (167)
|++.++.++||+++||+++ .|... +.+|++. ... +...+.|-.+|..-.+.+ ..++. .....=++..+++ .+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HK 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CC
Confidence 4678899999999999996 89998 8999642 111 111223433444433333 22221 1122334556755 45
Q ss_pred eEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 87 MCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 87 ~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
++.|+..++ ...++.+.|.+ ++|.++.+ +...+. ...+...++...++..|++||.
T Consensus 77 ~l~~~~~~~----------~~v~~~l~~~~-~gT~l~l~--~~~~~~-----~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG----------REVEVEFTEEG-DGTKVVET--FDAENE-----NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC----------CEEEEEEEECC-CCEEEEEE--ECCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 888886321 24688999865 66887765 443321 1222236777888889998884
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.34 E-value=2.7e-05 Score=57.75 Aligned_cols=139 Identities=15% Similarity=0.061 Sum_probs=80.1
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEe-eCCceeEEEEEEEeecCCCceEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYI-EGGEIRYTKHRVDALDKEKFMCKY 90 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 90 (167)
+..+..++||+++||+++ .|... +.+|....--.+...+.|-.+|..-.+.+. .++....+.=++..+++.+ ++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 466788999999999996 89887 677775432233334445344444444443 2322223334566676544 4455
Q ss_pred EEE-ecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhh
Q 031031 91 RFI-EGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKA 161 (167)
Q Consensus 91 ~~~-eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 161 (167)
+-- ++.. + .....++++.+.+ |+|.++.+..|..... ..........++....+..|++||.+
T Consensus 79 t~~~~~~~-~----~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 79 TEEFEGLP-D----GVALETVTFTELG-GRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EeEecCCC-C----CceEEEEEEEECC-CCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 2221 1 1246788888865 6799998866632211 00112222356678888999998863
No 34
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.32 E-value=0.00011 Score=56.94 Aligned_cols=146 Identities=11% Similarity=0.049 Sum_probs=88.5
Q ss_pred eeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCc---eeEEEEEEEeecCCC
Q 031031 9 TTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGE---IRYTKHRVDALDKEK 85 (167)
Q Consensus 9 ~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~ 85 (167)
...+..+..+++||+++|+++ .|.+. .|+|.|. +.++++++..+.--.+-.+.+....+ -..+-.+-...+.++
T Consensus 40 ~~~~k~~~~i~~s~e~v~~vi-~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~ 116 (195)
T cd08876 40 LKEFKAVAEVDASIEAFLALL-RDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADD 116 (195)
T ss_pred eEEEEEEEEEeCCHHHHHHHH-hhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCC
Confidence 467888999999999999995 99999 8999995 88999988764222233333322211 112222111222223
Q ss_pred ceEEEEEEecCC-ccc-cC---cceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHh-hhhHhhHHHHHHHHH
Q 031031 86 FMCKYRFIEGDG-FID-SM---LEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELV-KHKPLGMYEVVEAHL 159 (167)
Q Consensus 86 ~~~~y~~~eG~~-~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~k~ie~~l 159 (167)
..+...+..++. .+. +. ...+.+.+.++|.++++|.++....+++.+. .|.-.++.+ ......+++++.+.+
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443321 110 01 4667788999998878899999999988753 223333322 333456677766553
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.30 E-value=0.00016 Score=53.70 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=79.0
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccc-cceeeEEEEcCCCCcceEEEEEE--ee------CCceeEEEEEEEeec
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLF-SSIKSIEYFEGDGDVGTIKQINY--IE------GGEIRYTKHRVDALD 82 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P-~~v~s~e~~eGdg~~GsvR~~~~--~~------g~~~~~~kErl~~~D 82 (167)
++.+..++||+++||+++ .|... +.+|.+ ..+ .+...+.+-.+|-.-.+.+ .. .+......=++..++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 2 DRLHRVIAAPPERVYRAF-LDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred EEEEEEECCCHHHHHHHH-cCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 467788999999999996 99998 788875 222 2222233323333322222 22 111123333577786
Q ss_pred CCCceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 83 KEKFMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 83 ~~~~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
+.+ ++.|+..-++... + .....++.+++.+ ++|.++++...-+.. ..... ..+....++..|++||.
T Consensus 79 p~~-~i~~~~~~~~~~~--~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~~~~---~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL--S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IPPED---CELGWQESLANLAALVE 145 (146)
T ss_pred CCC-EEEEEEEecCCCC--C-ceEEEEEEEEecC-CCEEEEEEEeCCCch---hhhhH---HHHHHHHHHHHHHHHhc
Confidence 665 6677653222111 1 2346888888875 678888888643211 11222 36777888999998874
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.29 E-value=0.00018 Score=53.39 Aligned_cols=134 Identities=14% Similarity=0.036 Sum_probs=75.0
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccc-eeeEEEEcCCCCcceEEEEEE-eeCCceeEEEEEEEeecCCCceEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSS-IKSIEYFEGDGDVGTIKQINY-IEGGEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~-v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 89 (167)
+..+..++||+++||+++ -|... +.+|++.. . ++...+.|-.+|..-.+.+ .+++......=++..+|+.+ ++.
T Consensus 2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPW-TTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCc-cceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEE
Confidence 456788999999999996 88887 67776521 1 1111222322333323333 23333223344577787665 555
Q ss_pred EE--EEec-CCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHH-----hhhhHhhHHHHHHHHHh
Q 031031 90 YR--FIEG-DGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIEL-----VKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 90 y~--~~eG-~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~ 160 (167)
|+ +.++ .+... + ....+++|++.+ ++|.++.+..+.. ++..+. ..++...++..|++||.
T Consensus 78 ~t~~~~~~~~~~~~-~--~~~v~~~~~~~~-~gT~Ltl~~~~~~-------~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEK-P--FMTAIITFEDEG-GGTRYTARARHWT-------EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCC-C--cEEEEEEEEecC-CcEEEEEEEEeCC-------HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 55 3222 11111 1 145788899865 6788888755422 111111 13566788888888875
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.17 E-value=3.1e-05 Score=58.22 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=83.5
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEE
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCK 89 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 89 (167)
.+++.+.-+.-+|++++++ +.|... .|+.+|- -...++.+.++ ...+-.++.+-.+=-++..=|.. +++..+++.
T Consensus 2 ~~~~~s~lv~y~a~~mF~L-V~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDL-VNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHH-HHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 3567888899999999999 799999 9999996 55667777763 23555555543321123333433 556666777
Q ss_pred EEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 90 YRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 90 y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
-.+++|+ |+-..++|+|+|-++++|.|+..++|+..+
T Consensus 77 ~~l~~GP------Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDGP------FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcCC------hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 7888774 888999999999877899999999999976
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.09 E-value=0.00024 Score=52.83 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=74.4
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccce-------eeEEEEcCCCCc-ceEEEEEEeeCCceeEEEEEEEeecC
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSI-------KSIEYFEGDGDV-GTIKQINYIEGGEIRYTKHRVDALDK 83 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v-------~s~e~~eGdg~~-GsvR~~~~~~g~~~~~~kErl~~~D~ 83 (167)
++.++.|+||+++||+++ .| . +.+|.+..- ..|++ +-.+ |..+ +... ++. ....=++.++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~-t~--~-l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~-~~~~-~g~-~~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVF-TE--G-FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWY-EIGE-DGT-ECEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHH-Hh--c-hhhccCCCcccccCCCccEEE---cccCCcEEE-EecC-CCc-EeceEEEEEEcC
Confidence 578999999999999997 66 3 556654211 22332 1122 3332 2222 222 122346667766
Q ss_pred CCceEEEEEE-ecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCC-cCCchhhHHhhhhHhhHHHHHHHHHh
Q 031031 84 EKFMCKYRFI-EGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGV-EIKGIDIELVKHKPLGMYEVVEAHLK 160 (167)
Q Consensus 84 ~~~~~~y~~~-eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~~~~~~~~~~k~ie~~l~ 160 (167)
.+ ++.|+-. ..+..+.+.. .-..++++++.++++|.++.+..+-..... -..........++...++..|++||-
T Consensus 72 ~~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 72 PS-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CC-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 55 6666654 2111110011 236888889976467999888887543211 01111121224566778888888873
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.95 E-value=0.00031 Score=49.83 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=70.5
Q ss_pred ecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEEEecCCc
Q 031031 19 QVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRFIEGDGF 98 (167)
Q Consensus 19 ~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eG~~~ 98 (167)
+||+++||+++ .+... +.+|.+......+ -.+|..-.+ ...++......=++..+++.+ ++.|+.--++..
T Consensus 1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~~~-----~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEAL-TDPEG-LAQWFTTSEAEMD-----FRPGGSFRF-MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHH-HSHHH-HHHHSEEEEEEEE-----CSTTEEEEE-EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred CcCHHHHHHHH-CCHhH-HhhccCCCcceee-----eecCCEEEE-EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence 58999999996 89998 8899331222222 233443333 223333223333477776655 577775433321
Q ss_pred cccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHHHHHHHHH
Q 031031 99 IDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMYEVVEAHL 159 (167)
Q Consensus 99 ~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 159 (167)
+-.....++.|.+ .+++|.++.+.+=.+. ....+. ...+...++..|.+||
T Consensus 72 ---~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 ---DGPESRVTFEFEE-EGGGTRLTLTHSGFPD------DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp ---SCEEEEEEEEEEE-ETTEEEEEEEEEEEHS------HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEEEEE-cCCcEEEEEEEEcCCc------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234578888888 4567888777722222 222222 3667778888888886
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.79 E-value=0.00069 Score=49.72 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=76.1
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
.+.++.++||+++||+++ .|... +.+|.+. -...++. +|..-.+.+...++ ...=++..+++. +++.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence 367899999999999996 89988 7787543 2233332 33332344443222 122245667544 577787
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhh---HHhhhhHhhHHHHHHHHHhhC
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDI---ELVKHKPLGMYEVVEAHLKAY 162 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~---~~~~~~~~~~~k~ie~~l~~~ 162 (167)
.-.++ +. -..++++.+.++|+|.++.+...-+.. .++.. .........++..|++||...
T Consensus 71 w~~~~-----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG-----EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC-----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 64322 12 337888888765678888776543221 11111 112356678888888888653
No 41
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0037 Score=46.97 Aligned_cols=142 Identities=11% Similarity=0.031 Sum_probs=74.3
Q ss_pred cceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCc
Q 031031 7 ENTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKF 86 (167)
Q Consensus 7 ~~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~ 86 (167)
.....+..+..|++|+++||+++ .|... +.+|+..-=.+.+..-| .+....+.... ++.....-+..++++..
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~-Tdpe~-l~~W~~~~~~~~d~r~g---g~~~~~~~~~~-g~~~~~~~~~~~v~p~~- 77 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEAL-TDPEL-LARWFMPGGAEFDARTG---GGERVRFRGPD-GPVHSFEGEYLEVVPPE- 77 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHh-cCHHH-HHhhcCCCCCccceecC---CceEEeeecCC-CCeeecceEEEEEcCCc-
Confidence 56678899999999999999996 89997 88998621100111111 12222333322 22234445556665444
Q ss_pred eEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHh--hhhHhhHHHHHHHHHh
Q 031031 87 MCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELV--KHKPLGMYEVVEAHLK 160 (167)
Q Consensus 87 ~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~--~~~~~~~~k~ie~~l~ 160 (167)
++.|+-...+.-. +...=..++++.+..+|+ +++..........+.....+.. .+....++..++++|.
T Consensus 78 rIv~tw~~~~~~~--~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 78 RIVFTWDFDEDGE--PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEEeccCCCCC--cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 5555554333211 233345677777765553 2333333332221112111111 4556777888877764
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.58 E-value=0.003 Score=45.77 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=69.9
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEE
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYR 91 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 91 (167)
++.+..++||+++||+++ -|... +.+|... ..+.+...| |..+ +..|. +.=++.++++. +++.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~-~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPG-KKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCC-CEEEEE
Confidence 467889999999999996 88887 7888753 334443223 3333 33332 22245566544 355555
Q ss_pred EEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHh-hHHHHHHHHH
Q 031031 92 FIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPL-GMYEVVEAHL 159 (167)
Q Consensus 92 ~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~-~~~k~ie~~l 159 (167)
---.+ .+. -..-..++.+.+. +++|.++.+....+.. ..+...+... .++..|.++|
T Consensus 67 w~~~~-~~~--~~~s~v~~~l~~~-~~gT~ltl~~~g~~~~-------~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKS-WPE--GHYSTVTLTFTEK-DDETELKLTQTGVPAG-------EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCC-CCC--CCcEEEEEEEEEC-CCCEEEEEEEECCCCc-------hHHHHHhhHHHHHHHHHHHHh
Confidence 43211 111 1124578888886 4668877776644331 1222245555 3777777765
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.38 E-value=0.0035 Score=46.08 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=65.8
Q ss_pred EecCHHHHHHHHhcccccccccc-cccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCC-ceEEEEEEec
Q 031031 18 TQVSPSRMFKALILDSHNICPRL-LFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEK-FMCKYRFIEG 95 (167)
Q Consensus 18 i~apa~~vW~~~~~d~~~l~p~~-~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~-~~~~y~~~eG 95 (167)
++||+++||+++ -|... +.+| .+. ...+++..| |..+. ..+. +.=+...+|+.+ -.++|+.-+.
T Consensus 1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~---~~~~----~~G~~~ev~pp~rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAYT-LTRLSLGS-PAEMDAKVG----GKFSL---FNGS----VEGEFTELEKPKKIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHH-cCHHH-HHHHhcCC-CccccCCcC----CEEEE---ecCc----eEEEEEEEcCCCEEEEEEecCCC
Confidence 479999999996 88887 7777 431 212222222 23332 2232 222445565554 3344444221
Q ss_pred CCccccCcceEEEEEEEeecCCCccEEEEEEE-EEecCCCc--CCchhhHHhhhhHhh-HHHHHHHHHh
Q 031031 96 DGFIDSMLEFLTHEIKFEGYGQGGCVCKITCD-FKAKEGVE--IKGIDIELVKHKPLG-MYEVVEAHLK 160 (167)
Q Consensus 96 ~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-y~~~~~~~--~~~~~~~~~~~~~~~-~~k~ie~~l~ 160 (167)
+. . .+ -..|+.+.+.++|+|.++.+.. +....... ...+.. .+.... ++..|++||-
T Consensus 67 ~~-~--~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~---~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 67 EE-D--VY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERC---RNGWTQNFLDRFEKILG 127 (132)
T ss_pred CC-C--Cc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHH---HhChHHHHHHHHHHHhC
Confidence 11 1 12 2588889987656788888877 43322110 112223 566666 6899998873
No 44
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.94 E-value=0.1 Score=39.21 Aligned_cols=113 Identities=9% Similarity=0.145 Sum_probs=68.8
Q ss_pred cCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEEEe-cCCc
Q 031031 20 VSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRFIE-GDGF 98 (167)
Q Consensus 20 apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~e-G~~~ 98 (167)
...+++|+-+.....+ -....| .+.+|++++.++ .-..|.++|+++ .++|++. ++ ...++.|.+-. |+.
T Consensus 17 LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt-~~-~~~~v~f~~~~~g~~- 86 (141)
T cd08863 17 LTRAQLWRGLVLRARE-PQLFVP-GLDRCEVLSESG-TVLERELTFGPA----KIRETVT-LE-PPSRVHFLQADAGGT- 86 (141)
T ss_pred cCHHHHHhHHHhhhCC-chhccc-ccceEEEEecCC-CEEEEEEEECCc----eEEEEEE-ec-CCcEEEEEecCCCCe-
Confidence 3568999887655554 334566 489999998874 256799999875 7999977 43 34578888876 321
Q ss_pred cccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHH
Q 031031 99 IDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEV 154 (167)
Q Consensus 99 ~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ 154 (167)
.++.+....+| -.-.++.|+-...+..++ ..++..+....+++.
T Consensus 87 ---------l~~~iee~~~g--~L~lrf~ye~~~p~~~~~-e~~~~~~~~~~a~~~ 130 (141)
T cd08863 87 ---------LTNTIEEPEDG--ALYLRFVYETTLPEVAEE-EAKAYQEIVKQAYKE 130 (141)
T ss_pred ---------EEEEeccCCCC--cEEEEEEEEecCCCcCch-HHHHHHHHHHHHHHH
Confidence 24444332233 356777777765432222 222234444444443
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.83 E-value=0.12 Score=41.07 Aligned_cols=125 Identities=11% Similarity=-0.024 Sum_probs=75.4
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCC-CcceEEEEEEee--C--CceeEEEEEEEeecCC
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDG-DVGTIKQINYIE--G--GEIRYTKHRVDALDKE 84 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~GsvR~~~~~~--g--~~~~~~kErl~~~D~~ 84 (167)
..+..+.++++|++++|+++ .|... .++|.+ .++++++++.-+ ...-++..+=.+ . .+-..+--+-...+..
T Consensus 45 ~~~~ge~~v~as~~~v~~ll-~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~ 121 (205)
T cd08874 45 HGFLGAGVIKAPLATVWKAV-KDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGE 121 (205)
T ss_pred ceEEEEEEEcCCHHHHHHHH-hCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCC
Confidence 44567888999999999995 99999 999998 699999987653 332233332112 2 1111222221222233
Q ss_pred CceEEEEEEecCCcccc-----CcceEEEEEEEeec---CCCccEEEEEEEEEecCCCcCC
Q 031031 85 KFMCKYRFIEGDGFIDS-----MLEFLTHEIKFEGY---GQGGCVCKITCDFKAKEGVEIK 137 (167)
Q Consensus 85 ~~~~~y~~~eG~~~~~~-----~~~~y~~ti~v~p~---~~g~s~v~W~~~y~~~~~~~~~ 137 (167)
...+.-+-+.-+.++.+ ....+.+-+.+.|. ++|.|.+......++.+++.|.
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 32222222222112210 24467788889997 6678999999999998666543
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.78 E-value=0.19 Score=40.85 Aligned_cols=148 Identities=11% Similarity=-0.008 Sum_probs=85.2
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCC-CcceEEEEEEee---CCceeEEEEEEEe--e
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDG-DVGTIKQINYIE---GGEIRYTKHRVDA--L 81 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~GsvR~~~~~~---g~~~~~~kErl~~--~ 81 (167)
+...+..+..+++|++++|+++ .|... -++|.+ ...++++++.-+ ..+-++ +.+.. -.+-..+-.+-.. .
T Consensus 75 ~~l~fk~e~~vd~s~~~v~dlL-~D~~~-R~~WD~-~~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~ 150 (235)
T cd08873 75 GVLSFCVELKVQTCASDAFDLL-SDPFK-RPEWDP-HGRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPA 150 (235)
T ss_pred CceEEEEEEEecCCHHHHHHHH-hCcch-hhhhhh-cccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEecc
Confidence 4456788889999999999995 99999 999998 488999987532 223233 32221 1111122222111 2
Q ss_pred cCCC-ceEEEEEEecCCccc-c---CcceEEEEEEEeecCCCccEEEEEEEEEecCC-C-cCCchhhHHhhhhHhhHHHH
Q 031031 82 DKEK-FMCKYRFIEGDGFID-S---MLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG-V-EIKGIDIELVKHKPLGMYEV 154 (167)
Q Consensus 82 D~~~-~~~~y~~~eG~~~~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~-~-~~~~~~~~~~~~~~~~~~k~ 154 (167)
+..+ ..+...-+.=+..|. + ....+.+-+.+.|.++++|.|......+|.-- - .-+-... -......|++
T Consensus 151 ~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~---~~~~~~~~~~ 227 (235)
T cd08873 151 TDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGL---SALYCRTFHC 227 (235)
T ss_pred CCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhh---hHHHHHHHHH
Confidence 2222 122222232011110 0 24567788999998888899998888877421 1 1111122 3344566777
Q ss_pred HHHHHhhC
Q 031031 155 VEAHLKAY 162 (167)
Q Consensus 155 ie~~l~~~ 162 (167)
-+.||..|
T Consensus 228 ~~~~~~~~ 235 (235)
T cd08873 228 CEQFLVTN 235 (235)
T ss_pred HHHHhccC
Confidence 78887654
No 47
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.14 E-value=0.38 Score=36.15 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=72.1
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCce---eEEEEEEEeecCC
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEI---RYTKHRVDALDKE 84 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~---~~~kErl~~~D~~ 84 (167)
+...+....++++|++++|+++ .|... .++|-| .+.++++++..+..-.+....+....+. ..+--+-...+++
T Consensus 37 ~~~~~k~~~~i~~~~~~v~~~l-~d~~~-~~~w~~-~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~ 113 (193)
T cd00177 37 GLKLLKAEGVIPASPEQVFELL-MDIDL-RKKWDK-NFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDD 113 (193)
T ss_pred CceeEEEEEEECCCHHHHHHHH-hCCch-hhchhh-cceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCC
Confidence 3556778889999999999996 88887 899998 5888998877643344444444322210 1111111222332
Q ss_pred Cc-eEEEEEEecCCcccc--Cc--ceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 85 KF-MCKYRFIEGDGFIDS--ML--EFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 85 ~~-~~~y~~~eG~~~~~~--~~--~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
+. .+...=++.+..+.. .. ..+.+-+.++|.++++|.+++....++.+.
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 32 111111222111110 11 122455677888778999999999998864
No 48
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.14 E-value=0.4 Score=37.94 Aligned_cols=147 Identities=7% Similarity=-0.027 Sum_probs=81.3
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCC-CcceEEEEEEe-eCCc---eeEEEEEEEeecCC
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDG-DVGTIKQINYI-EGGE---IRYTKHRVDALDKE 84 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~GsvR~~~~~-~g~~---~~~~kErl~~~D~~ 84 (167)
.-+..+..+++|+++++..+..|... .++|.+ .+.++++++.-+ ..=-++.+... ++.. -..+--|...-++.
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~-~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNP-NVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhh-hceecc-cchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 55778889999999999443578898 899998 477888776643 11112332221 1111 11222222222333
Q ss_pred CceEEEEEEecCCccc-c---CcceEEEEEEEeecCC--CccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHHHHHHH
Q 031031 85 KFMCKYRFIEGDGFID-S---MLEFLTHEIKFEGYGQ--GGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMYEVVEA 157 (167)
Q Consensus 85 ~~~~~y~~~eG~~~~~-~---~~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~ 157 (167)
+..+.....+-+.++. + ......+-+.+.|.++ ++|.++|.+-.++.+. .| .-.+.. +.+.....++.|.+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP-~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP-KSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CC-HHHHHHHhHHhHHHHHHHHHH
Confidence 3222111122222221 0 1234556777888765 7899999999999865 22 323322 24444566777666
Q ss_pred HHh
Q 031031 158 HLK 160 (167)
Q Consensus 158 ~l~ 160 (167)
++.
T Consensus 205 ~~~ 207 (209)
T cd08905 205 RMA 207 (209)
T ss_pred HHh
Confidence 654
No 49
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.01 E-value=0.23 Score=37.61 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred CHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEEEecCCccc
Q 031031 21 SPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRFIEGDGFID 100 (167)
Q Consensus 21 pa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eG~~~~~ 100 (167)
+.++||+-+.....+ --.+.| .+.+|++++.. ...-.|.++|+ + ..++|++.. .+. +++.|....|.
T Consensus 19 Tr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg--~--~~v~E~v~~-~~~-~~V~f~~~~Gs---- 85 (149)
T PF08982_consen 19 TREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFG--G--ATVRERVTL-YPP-ERVDFAQHDGS---- 85 (149)
T ss_dssp -HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEET--T--EEEEEEEEE-ETT-TEEEESSSBEE----
T ss_pred CHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEEC--C--cEEEEEEEE-eCC-cEEEEEcCCCC----
Confidence 456899886644444 335667 58999999776 55788999993 2 389999874 333 47777222221
Q ss_pred cCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 101 SMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 101 ~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
+.++.+....+| -.-.++.|+-.
T Consensus 86 ------~lt~~I~e~~~g--~L~ltf~ye~~ 108 (149)
T PF08982_consen 86 ------SLTNIISEPEPG--DLFLTFTYEWR 108 (149)
T ss_dssp ------EEEEEEEEEETT--EEEEEEEEEEE
T ss_pred ------EEEEEEecCCCC--cEEEEEEEEec
Confidence 234444322222 56677777765
No 50
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.96 E-value=0.6 Score=36.79 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=83.4
Q ss_pred cceeEEEEEEEE-ecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCc-----eeEEEEEEEe
Q 031031 7 ENTTRVTQSFVT-QVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGE-----IRYTKHRVDA 80 (167)
Q Consensus 7 ~~~~~~~~ei~i-~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~-----~~~~kErl~~ 80 (167)
.|...+....++ ++|++.+.+++ .|... .++|.+. +...++++-++..|+ +.+.+.-..| -.++--|-.-
T Consensus 47 s~~~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~ 122 (209)
T cd08870 47 TGLYEYLVRGVFEDCTPELLRDFY-WDDEY-RKKWDET-VIEHETLEEDEKSGT-EIVRWVKKFPFPLSDREYVIARRLW 122 (209)
T ss_pred CCceEEEEEEEEcCCCHHHHHHHH-cChhh-Hhhhhhh-eeeEEEEEecCCCCc-EEEEEEEECCCcCCCceEEEEEEEE
Confidence 344567777788 56999999995 99988 8999985 667787766542122 2222211111 1122222222
Q ss_pred ec-CCCceEEEEEEecCCccc---cCcceEEEEEEEeec--CCCccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHHH
Q 031031 81 LD-KEKFMCKYRFIEGDGFID---SMLEFLTHEIKFEGY--GQGGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMYE 153 (167)
Q Consensus 81 ~D-~~~~~~~y~~~eG~~~~~---~~~~~y~~ti~v~p~--~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k 153 (167)
.| +....+...-+.-+..+. -....|.+.+.+.|. ++++|.+..+.--++.+ . .|.-.++. +...+-.+++
T Consensus 123 ~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~-IP~wlvN~~~~~~~~~~l~ 200 (209)
T cd08870 123 ESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-G-IPRELAKLAVKRGMPGFLK 200 (209)
T ss_pred EcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-C-CCHHHHHHHHHhhhHHHHH
Confidence 33 222222222222111110 036788999999997 55678888877777633 3 33333322 2344457777
Q ss_pred HHHHHHhh
Q 031031 154 VVEAHLKA 161 (167)
Q Consensus 154 ~ie~~l~~ 161 (167)
.|...+++
T Consensus 201 ~l~~a~~~ 208 (209)
T cd08870 201 KLENALRK 208 (209)
T ss_pred HHHHHHhc
Confidence 77776643
No 51
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.63 E-value=0.85 Score=36.13 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=81.4
Q ss_pred eEEEEEEEE-ecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeC---CceeEEEEEEEeecCCC
Q 031031 10 TRVTQSFVT-QVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEG---GEIRYTKHRVDALDKEK 85 (167)
Q Consensus 10 ~~~~~ei~i-~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g---~~~~~~kErl~~~D~~~ 85 (167)
..+..+..+ ++|++.+++++ .|... .++|-|. +..+++++.-+.--.|....+..- .+-..+--|...-++..
T Consensus 47 ~~~k~~~~~~~~s~e~~~~~l-~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~ 123 (222)
T cd08871 47 KMIKVSAIFPDVPAETLYDVL-HDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGE 123 (222)
T ss_pred EEEEEEEEeCCCCHHHHHHHH-HChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCE
Confidence 446666766 68999999995 89887 8999995 667777765432223333333211 11112222222222211
Q ss_pred ceEEEEEEecCCccc-cC---cceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHh-hhhHhhHHHHHHHHHh
Q 031031 86 FMCKYRFIEGDGFID-SM---LEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELV-KHKPLGMYEVVEAHLK 160 (167)
Q Consensus 86 ~~~~y~~~eG~~~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~k~ie~~l~ 160 (167)
..+...-++-+..+. ++ ...+.+-+.++|.++++|.+.|....++.+. .|.-.+..+ ......+++.|...+.
T Consensus 124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111111112111111 01 1235666788888777899999988888764 223333322 3344577777777766
Q ss_pred hCCc
Q 031031 161 AYPQ 164 (167)
Q Consensus 161 ~~~~ 164 (167)
+.++
T Consensus 202 ~y~~ 205 (222)
T cd08871 202 KYPE 205 (222)
T ss_pred HHHH
Confidence 6554
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.35 E-value=1.1 Score=35.40 Aligned_cols=146 Identities=9% Similarity=-0.013 Sum_probs=83.1
Q ss_pred eeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCce-eEEEEE------EEee
Q 031031 9 TTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEI-RYTKHR------VDAL 81 (167)
Q Consensus 9 ~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~-~~~kEr------l~~~ 81 (167)
...+..+..+++|++++.+++ .|... .|+|.|. ....+.++..+..-.+-.+.+ ..|. -.-||= ++.+
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl-~d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~ 119 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALL-NEVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRL 119 (215)
T ss_pred EEEEEEEEEecCChhHeEEEE-ehhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeee
Confidence 567888899999999999995 99986 9999996 445555544432122222222 2220 011221 1223
Q ss_pred cCCCceEEEEE--EecC---------Ccccc-----CcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhh
Q 031031 82 DKEKFMCKYRF--IEGD---------GFIDS-----MLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVK 145 (167)
Q Consensus 82 D~~~~~~~y~~--~eG~---------~~~~~-----~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~ 145 (167)
+ ++..+.... +..+ .++.. ....+.+-+.++|.++++|.++..+..+|.+.-.|.--.=..++
T Consensus 120 ~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 120 E-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred c-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHH
Confidence 2 333332222 2110 02210 13567778889998888999999998887765344332222235
Q ss_pred hhHhhHHHHHHHHHh
Q 031031 146 HKPLGMYEVVEAHLK 160 (167)
Q Consensus 146 ~~~~~~~k~ie~~l~ 160 (167)
+.+..+++.|.+-+.
T Consensus 199 ~~~~~~~~~l~k~~~ 213 (215)
T cd08877 199 KFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555677777766543
No 53
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.21 E-value=1.1 Score=35.02 Aligned_cols=147 Identities=9% Similarity=0.023 Sum_probs=79.7
Q ss_pred EEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCC-CcceEEEEEEeeC-Cc---eeEEEEEEEeecCCC
Q 031031 11 RVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDG-DVGTIKQINYIEG-GE---IRYTKHRVDALDKEK 85 (167)
Q Consensus 11 ~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~ 85 (167)
-+..+..+++|+++++..+..|.+. .++|.+. +..+++++.-+ ..--+...+.... .+ -..+--|-...++..
T Consensus 49 ~~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 49 VFRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence 3677888999999998654589888 8999995 77777776642 2111222222221 11 111111222223322
Q ss_pred ceEEEEEEecCCccc-cC---cceEEEEEEEeecCC--CccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHHHHHHHH
Q 031031 86 FMCKYRFIEGDGFID-SM---LEFLTHEIKFEGYGQ--GGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMYEVVEAH 158 (167)
Q Consensus 86 ~~~~y~~~eG~~~~~-~~---~~~y~~ti~v~p~~~--g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~ 158 (167)
..+...-++=+..+. ++ ...+.+.+.+.|.++ ++|.+.|....++.+. .|. -.++. +.......++.|..+
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~-~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ-YLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc-eeeehhhHHHHHHHHHHHHHH
Confidence 222222222111110 01 233557778888654 5799999999988853 222 22222 245556777788777
Q ss_pred Hhh
Q 031031 159 LKA 161 (167)
Q Consensus 159 l~~ 161 (167)
+.+
T Consensus 205 ~~~ 207 (208)
T cd08868 205 IAT 207 (208)
T ss_pred Hhh
Confidence 753
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.94 E-value=1.4 Score=34.72 Aligned_cols=144 Identities=7% Similarity=-0.081 Sum_probs=76.5
Q ss_pred EEEEEEEecCHHHHHHHHhccccc-ccccccccceeeEEEEcCCC-CcceEEEEEEe-e-C---CceeEEE-EEEEeecC
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHN-ICPRLLFSSIKSIEYFEGDG-DVGTIKQINYI-E-G---GEIRYTK-HRVDALDK 83 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~-l~p~~~P~~v~s~e~~eGdg-~~GsvR~~~~~-~-g---~~~~~~k-Erl~~~D~ 83 (167)
+..+..++++++++++++ .|..+ .-++|-+ .+.++++++.-+ ...-++. ... + + .+-..+- ......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~-~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQ-NVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHH-Hhccchhhhhhhh-ccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 678888999999999996 66654 1289998 588888887653 3222332 221 1 1 1111111 12222333
Q ss_pred CCceEEEEEEecCCccc-cCcce-----EEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHh-hhhHhhHHHHHH
Q 031031 84 EKFMCKYRFIEGDGFID-SMLEF-----LTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELV-KHKPLGMYEVVE 156 (167)
Q Consensus 84 ~~~~~~y~~~eG~~~~~-~~~~~-----y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~k~ie 156 (167)
....+.+..++-+-++. ++|-. +...++..|.++++|.++|.+..++.+. .| .-.+..+ .+.....++.+.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP-~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LP-QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cC-HHHHHHHhhHHHHHHHHHHH
Confidence 33333333333322221 01111 2334444454556899999999988743 33 3333222 345567777777
Q ss_pred HHHh
Q 031031 157 AHLK 160 (167)
Q Consensus 157 ~~l~ 160 (167)
.++.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 7764
No 55
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=94.46 E-value=2.2 Score=34.74 Aligned_cols=118 Identities=11% Similarity=-0.028 Sum_probs=67.8
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeC-Cc---eeEEEEEEEeecCCC
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEG-GE---IRYTKHRVDALDKEK 85 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~ 85 (167)
..+..+..+++|++++++++ .|... .++|.++ +.++++++.-+.--.+..++..+- ++ -..+--+-..-+.++
T Consensus 81 ~~fK~e~~vd~s~e~v~~lL-~D~~~-r~~Wd~~-~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 81 LSFKVEMVVHVDAAQAFLLL-SDLRR-RPEWDKH-YRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred cEEEEEEEEcCCHHHHHHHH-hChhh-hhhhHhh-ccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 45677889999999999996 99999 9999985 889999866532123555543321 11 111111111122222
Q ss_pred c---eEEEEEEecCCccc-c---CcceEEEEEEEeecCCCccEEEEEEEEEe
Q 031031 86 F---MCKYRFIEGDGFID-S---MLEFLTHEIKFEGYGQGGCVCKITCDFKA 130 (167)
Q Consensus 86 ~---~~~y~~~eG~~~~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 130 (167)
. .+....+.=+-.+. + ...++.+-+.+.|.+++.|.+.+...-+|
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 2 12222222221221 0 13345677888888778899877554443
No 56
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.39 E-value=2 Score=33.98 Aligned_cols=144 Identities=7% Similarity=-0.007 Sum_probs=77.1
Q ss_pred eEEEEEEEEecCHHHHH-HHHhcccccccccccccceeeEEEEcCCCCcce-EEEEEEee-CCc---eeEEEEEEEeecC
Q 031031 10 TRVTQSFVTQVSPSRMF-KALILDSHNICPRLLFSSIKSIEYFEGDGDVGT-IKQINYIE-GGE---IRYTKHRVDALDK 83 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW-~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-vR~~~~~~-g~~---~~~~kErl~~~D~ 83 (167)
..+..+..+++|++++| .++ .|... .++|.+. +.++++++.-+.--. ++.++... +++ -..+--|--.-+.
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 55788899999999998 564 99999 9999995 888888866431111 12222221 112 1122223222233
Q ss_pred CC-ceEEEEEEecCCccccCcceEE-EE-----EEEee--cCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHH
Q 031031 84 EK-FMCKYRFIEGDGFIDSMLEFLT-HE-----IKFEG--YGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEV 154 (167)
Q Consensus 84 ~~-~~~~y~~~eG~~~~~~~~~~y~-~t-----i~v~p--~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ 154 (167)
+. -.+..++ .-+.++ +.+.|. +. +-+.| .++++|.+.|....++.+. .|..-.=..+.+.....++.
T Consensus 126 ~~~i~~~~sv-~~~~~P--~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08906 126 DRYVSAGIST-THSHKP--PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASH 201 (209)
T ss_pred CcEEEEEEEE-ecCCCC--CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 33 2233333 222222 233332 22 23333 4456899999999999873 33222221223444566666
Q ss_pred HHHHHh
Q 031031 155 VEAHLK 160 (167)
Q Consensus 155 ie~~l~ 160 (167)
|.+++.
T Consensus 202 LR~~~~ 207 (209)
T cd08906 202 LRQRIR 207 (209)
T ss_pred HHHHHh
Confidence 666553
No 57
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=94.11 E-value=2 Score=35.03 Aligned_cols=118 Identities=10% Similarity=-0.058 Sum_probs=68.0
Q ss_pred eeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEee--CCc-eeEEEEEEEe-ecCC
Q 031031 9 TTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIE--GGE-IRYTKHRVDA-LDKE 84 (167)
Q Consensus 9 ~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~--g~~-~~~~kErl~~-~D~~ 84 (167)
...+..+..+++|++++++++ .|... .++|.++ ..++++++.-+.---|..+.-.+ ..+ -..+-.+-.. -.++
T Consensus 77 ~l~fk~e~~vdvs~~~l~~LL-~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 77 VLSVWVEKHVKRPAHLAYRLL-SDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred cEEEEEEEEEcCCHHHHHHHH-hChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence 457888899999999999995 99999 9999995 77888886643111266655322 111 1111111111 1212
Q ss_pred CceEEE--EEEecCCccc-cC---cce-EEEEEEEeecCCCccEEEEEEEEEe
Q 031031 85 KFMCKY--RFIEGDGFID-SM---LEF-LTHEIKFEGYGQGGCVCKITCDFKA 130 (167)
Q Consensus 85 ~~~~~y--~~~eG~~~~~-~~---~~~-y~~ti~v~p~~~g~s~v~W~~~y~~ 130 (167)
+..+.. .-+.-+.+|. ++ ... +.+- .+.|.++++|.|.....-+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 222221 1121111111 01 233 3334 77888888899998888877
No 58
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.19 E-value=3.1 Score=32.03 Aligned_cols=151 Identities=14% Similarity=-0.010 Sum_probs=84.2
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeC-Cce---eEEEEE-EEeec
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEG-GEI---RYTKHR-VDALD 82 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g-~~~---~~~kEr-l~~~D 82 (167)
+...+..+..+.++++++...+..|... .++|-+. +.++++++-...-..|..+.+..- ++. ..+--| .....
T Consensus 43 ~~~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~ 120 (206)
T smart00234 43 PGEASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELV 120 (206)
T ss_pred ceEEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcC
Confidence 3456778888999999855433489888 8999995 778888766432235555444311 121 122111 11122
Q ss_pred CCCceEEEEEEecCCccc-cC---cceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHH
Q 031031 83 KEKFMCKYRFIEGDGFID-SM---LEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAH 158 (167)
Q Consensus 83 ~~~~~~~y~~~eG~~~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 158 (167)
+....+..+-++.+-.+. ++ ...+.+-+.+.|.+++.|.+.|....++.+. .|.--.=..+......+++.+-++
T Consensus 121 ~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 121 DGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHH
Confidence 333333333333322110 01 2356788889998877899999999888764 332221112244445666666665
Q ss_pred Hhh
Q 031031 159 LKA 161 (167)
Q Consensus 159 l~~ 161 (167)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 543
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.08 E-value=3.5 Score=32.42 Aligned_cols=148 Identities=12% Similarity=0.031 Sum_probs=81.8
Q ss_pred cceeEEEEEEEE-ecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcce-EEEEEEeeC---CceeEEEEEEEee
Q 031031 7 ENTTRVTQSFVT-QVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGT-IKQINYIEG---GEIRYTKHRVDAL 81 (167)
Q Consensus 7 ~~~~~~~~ei~i-~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-vR~~~~~~g---~~~~~~kErl~~~ 81 (167)
.|...+..+..+ ++|++.+.+++ .|... .++|.+. +.++++++.+...++ +-.+.+.-= ..-.++-.|-...
T Consensus 42 s~~~~~k~~~~~~d~s~~~~~~~~-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~ 118 (207)
T cd08911 42 TGLYEYKVYGSFDDVTARDFLNVQ-LDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYII 118 (207)
T ss_pred CCcEEEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEE
Confidence 344567776666 89999999995 89988 8999984 778888877532222 222222110 1112444443446
Q ss_pred cCCCceEEE--EEEec------CCccccCcceEEEEEEEeecC---CCccEEEEEEEEEecCCCcCCchhhH-HhhhhHh
Q 031031 82 DKEKFMCKY--RFIEG------DGFIDSMLEFLTHEIKFEGYG---QGGCVCKITCDFKAKEGVEIKGIDIE-LVKHKPL 149 (167)
Q Consensus 82 D~~~~~~~y--~~~eG------~~~~~~~~~~y~~ti~v~p~~---~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~ 149 (167)
|+++..+.- .-++- .... ...+|.+.+.+.|.+ +++|.+.++.- -..+...|.-.++ .+....-
T Consensus 119 ~~~~~~~~i~~~sv~hp~~P~~~g~V--Rv~~~~~~~~i~p~~~~~~~~~~~~~~~~--~dPgG~IP~~lvN~~~~~~~~ 194 (207)
T cd08911 119 DEENKLIVIVSKAVQHPSYPESPKKV--RVEDYWSYMVIRPHKSFDEPGFEFVLTYF--DNPGVNIPSYITSWVAMSGMP 194 (207)
T ss_pred cCCCCEEEEEEecCCCCCCCCCCCCE--EEEEeEEEEEEEeCCCCCCCCeEEEEEEE--eCCCCccCHHHHHHHHHhhcc
Confidence 665543211 11221 1111 366788899999873 45777764443 3333333333332 2234446
Q ss_pred hHHHHHHHHHhh
Q 031031 150 GMYEVVEAHLKA 161 (167)
Q Consensus 150 ~~~k~ie~~l~~ 161 (167)
.+++.|...+++
T Consensus 195 ~~l~~l~~a~~~ 206 (207)
T cd08911 195 DFLERLRNAALK 206 (207)
T ss_pred HHHHHHHHHHhc
Confidence 777777666543
No 60
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.45 E-value=4.8 Score=30.29 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=60.2
Q ss_pred EEEEEEecCHHHHHHHHhccccccccc---cccc---ceeeEEEEcCCCCcceEEEE-EEee-CCc---------eeEEE
Q 031031 13 TQSFVTQVSPSRMFKALILDSHNICPR---LLFS---SIKSIEYFEGDGDVGTIKQI-NYIE-GGE---------IRYTK 75 (167)
Q Consensus 13 ~~ei~i~apa~~vW~~~~~d~~~l~p~---~~P~---~v~s~e~~eGdg~~GsvR~~-~~~~-g~~---------~~~~k 75 (167)
+.++++++|+++||++| .|-.= +.. -+.. .+.+++ .+|+| -+++.- .+.. ..| .-.++
T Consensus 2 ~~~~~~~~~~~~v~~~~-~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAF-TDEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred eEEEEcCCCHHHHHHHH-cCHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 57889999999999997 55432 111 2211 233333 22332 111111 1111 111 01222
Q ss_pred --EEEEeecCCCceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEec
Q 031031 76 --HRVDALDKEKFMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAK 131 (167)
Q Consensus 76 --Erl~~~D~~~~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~ 131 (167)
|+-...++..++.+|++--.+. --+.++++.+.|.+ ++|.+.++.+....
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~-----P~~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGA-----PVSISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCc-----eEEEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 2222336777888888743222 23589999999954 67999999999884
No 61
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=89.29 E-value=9.2 Score=30.10 Aligned_cols=146 Identities=14% Similarity=0.025 Sum_probs=76.8
Q ss_pred cceeEEEEEEEEe-cCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEee---CCc--eeEEEEEEEe
Q 031031 7 ENTTRVTQSFVTQ-VSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIE---GGE--IRYTKHRVDA 80 (167)
Q Consensus 7 ~~~~~~~~ei~i~-apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~---g~~--~~~~kErl~~ 80 (167)
.|...+.....+. ++++.+.+++ .|... .++|.+... ++.-.+.++ -.|-.+.+.. -.+ .-..+.+ ..
T Consensus 46 s~~~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~~~-~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~-~~ 119 (207)
T cd08910 46 SGLYEYKVFGVLEDCSPSLLADVY-MDLEY-RKQWDQYVK-ELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQR-RD 119 (207)
T ss_pred CCcEEEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHHHHH-hheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEe-cc
Confidence 4445677788887 7999999995 89998 899999644 432122222 1122222211 111 1112222 23
Q ss_pred ecCCCceEEE---EEEecCCccc-c---CcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHH-hhhhHhhHH
Q 031031 81 LDKEKFMCKY---RFIEGDGFID-S---MLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIEL-VKHKPLGMY 152 (167)
Q Consensus 81 ~D~~~~~~~y---~~~eG~~~~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~-~~~~~~~~~ 152 (167)
+|.+...+.. ..++=+..+. + ....|.+.+.++|.++++|.+.....-++.+ . .|.-.++. +....-.++
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~-IP~wlvN~~~~~~~~~~l 197 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-M-IPSWLINWAAKNGVPNFL 197 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-c-chHHHHHHHHHHhhHHHH
Confidence 4444432111 1111110110 0 2567889999998877778777776666643 2 33333322 244445677
Q ss_pred HHHHHHHh
Q 031031 153 EVVEAHLK 160 (167)
Q Consensus 153 k~ie~~l~ 160 (167)
+.|...++
T Consensus 198 ~~l~ka~~ 205 (207)
T cd08910 198 KDMQKACQ 205 (207)
T ss_pred HHHHHHHh
Confidence 77766554
No 62
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=8.6 Score=28.91 Aligned_cols=140 Identities=15% Similarity=0.016 Sum_probs=81.9
Q ss_pred eEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC-CCcceEEEEEEe-eCCc-eeEEEEEEEe--ecCC
Q 031031 10 TRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD-GDVGTIKQINYI-EGGE-IRYTKHRVDA--LDKE 84 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~GsvR~~~~~-~g~~-~~~~kErl~~--~D~~ 84 (167)
+.......|+||.+-||+.. +..++ +..+-|..+ +-+-+|+ -+.|+--.+.+. -|.+ --.-+-|.++ +|+-
T Consensus 2 ~tF~~~~~i~aP~E~VWafh-srpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFH-SRPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhh-cCccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 45677788999999999985 88887 566777433 2223343 133443333322 1222 1133444454 6554
Q ss_pred CceEEEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHH
Q 031031 85 KFMCKYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHL 159 (167)
Q Consensus 85 ~~~~~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 159 (167)
. +++=..+.|+. + --+..-+-+|.+.+ |+|++.=++.|+...+....--..+.+.-....||+.-+.-+
T Consensus 78 ~-~FtDv~i~gPf-p---~~~WrHtH~F~~eg-g~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 S-RFTDVCITGPF-P---ALNWRHTHNFVDEG-GGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred c-eeeeeeecCCc-c---ceeeEEEeeeecCC-CcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHH
Confidence 4 66666677753 2 22588899999865 679999999999976533222223222334456666655444
No 63
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=82.26 E-value=25 Score=28.40 Aligned_cols=145 Identities=6% Similarity=0.005 Sum_probs=77.3
Q ss_pred EEEEEEEEe-cCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEe---eCCceeE-EEEEEEeecCCC
Q 031031 11 RVTQSFVTQ-VSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYI---EGGEIRY-TKHRVDALDKEK 85 (167)
Q Consensus 11 ~~~~ei~i~-apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~---~g~~~~~-~kErl~~~D~~~ 85 (167)
.+.....+. ++++.+.++| .|... .++|.. .+.+.++++..+.--.|-...+. +-.+-.. ..-++...++..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l-~D~~~-r~~Wd~-~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYF-FDPDV-RMDWET-TLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHH-hChhh-HHHHHh-hhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 467777777 9999999995 89998 899998 58888887664211122122111 1111011 111222233221
Q ss_pred --------ceEEEEEEecCCccccCcceEEEEE-----------------EEeecCCCccEEEEEEEEEecCCCcCCchh
Q 031031 86 --------FMCKYRFIEGDGFIDSMLEFLTHEI-----------------KFEGYGQGGCVCKITCDFKAKEGVEIKGID 140 (167)
Q Consensus 86 --------~~~~y~~~eG~~~~~~~~~~y~~ti-----------------~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~ 140 (167)
-.+..++. -+..+. .-...++.. .+.| ++++|.+.+....+|.+. .|..-.
T Consensus 130 ~~~~~~~~vii~~Sv~-h~~~P~-~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~-iP~wvv 205 (235)
T cd08872 130 EPNAHDTWIVCNFSVD-HDSAPL-NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW-APASVL 205 (235)
T ss_pred cccCCCeEEEEEeccc-CccCCC-CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC-ccHHHH
Confidence 22333332 221221 112222332 2334 346788888887777653 333322
Q ss_pred hHHhhhhHhhHHHHHHHHHhhC
Q 031031 141 IELVKHKPLGMYEVVEAHLKAY 162 (167)
Q Consensus 141 ~~~~~~~~~~~~k~ie~~l~~~ 162 (167)
-..++..+-++++.+.+|++.+
T Consensus 206 n~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 206 RAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHhhchHHHHHHHHHHHHh
Confidence 2334556679999999999865
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=79.62 E-value=27 Score=27.14 Aligned_cols=143 Identities=6% Similarity=-0.050 Sum_probs=75.0
Q ss_pred eEEEEEEEEecCHHHHHHHHhcc--cccccccccccceeeEEEEcCCCCcceEEEEEEe-eC-C---ceeEE-EEEEEee
Q 031031 10 TRVTQSFVTQVSPSRMFKALILD--SHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYI-EG-G---EIRYT-KHRVDAL 81 (167)
Q Consensus 10 ~~~~~ei~i~apa~~vW~~~~~d--~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~-~g-~---~~~~~-kErl~~~ 81 (167)
..+..+..++++++++.+++ .| ... .++|-+. +..+++++.-+..=.|-...+. .. + +-..+ .+....+
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l-~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~ 122 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVI-IPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRY 122 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHH-HhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEe
Confidence 34778889999999999985 77 565 7899985 8888988775321122222211 11 1 00111 1111223
Q ss_pred cCCCceEEEEEEecCCccccCcce------EEEEEEEeecC--CCccEEEEEEEEEecCCCcCCchhhH-HhhhhHhhHH
Q 031031 82 DKEKFMCKYRFIEGDGFIDSMLEF------LTHEIKFEGYG--QGGCVCKITCDFKAKEGVEIKGIDIE-LVKHKPLGMY 152 (167)
Q Consensus 82 D~~~~~~~y~~~eG~~~~~~~~~~------y~~ti~v~p~~--~g~s~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (167)
++....+...-++=+..+ +.+. +.+-+-+.|.+ +++|.++|.+..++.+. .| .-.+. .+.+.....+
T Consensus 123 ~~~~~~i~~~Sv~hp~~p--~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP-~~lvn~~~~~~~~~~~ 198 (206)
T cd08867 123 EDNQWSSSGKSVDIPERP--PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP-QSLVESAMPSNLVNFY 198 (206)
T ss_pred CCCeEEEEEEeccCCCCC--CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc-HHHHHhhhhhhHHHHH
Confidence 332222222223222222 2223 22334456543 35799999999999864 22 33332 2233445666
Q ss_pred HHHHHHH
Q 031031 153 EVVEAHL 159 (167)
Q Consensus 153 k~ie~~l 159 (167)
+.|-.|+
T Consensus 199 ~~lr~~~ 205 (206)
T cd08867 199 TDLVKGV 205 (206)
T ss_pred HHHHHhc
Confidence 7666665
No 65
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=73.09 E-value=22 Score=28.66 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=66.4
Q ss_pred EEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEE--eeCCceeEEEEEEEeecCCCceEEEEE
Q 031031 15 SFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINY--IEGGEIRYTKHRVDALDKEKFMCKYRF 92 (167)
Q Consensus 15 ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~--~~g~~~~~~kErl~~~D~~~~~~~y~~ 92 (167)
.--+..+++.+|++ +++... ..+..| ..+...+...+-+-+.+-.+.. .+=. ..++ -++ .+++..++++ ..
T Consensus 73 rrligysp~~my~v-VS~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~-S~V-t~~~p~l~kt-~~ 145 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSV-VSNVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYT-SNV-TCVKPHLTKT-VC 145 (227)
T ss_pred HhhhCCCHHHHHHH-HHhHHH-hhcccc-ceeccceeecCCCCCceeeEEecCcccc-hhhe-eee-EEecccceEE-ee
Confidence 33468899999999 688887 778888 5666665544411133444443 2211 1122 222 2444443333 23
Q ss_pred EecCCccccCcceEEEEEEEeecC--CCccEEEEEEEEEecC
Q 031031 93 IEGDGFIDSMLEFLTHEIKFEGYG--QGGCVCKITCDFKAKE 132 (167)
Q Consensus 93 ~eG~~~~~~~~~~y~~ti~v~p~~--~g~s~v~W~~~y~~~~ 132 (167)
-+|.+ |......|+|.|+. .+.|.+...+.|+-..
T Consensus 146 ~d~rL-----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 146 ADGRL-----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccccH-----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 35554 66778899999988 4799999999999865
No 66
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=70.81 E-value=47 Score=25.75 Aligned_cols=119 Identities=13% Similarity=-0.011 Sum_probs=68.5
Q ss_pred eeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEee---CCceeEEEEEEEeecCCC
Q 031031 9 TTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIE---GGEIRYTKHRVDALDKEK 85 (167)
Q Consensus 9 ~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~---g~~~~~~kErl~~~D~~~ 85 (167)
...+..+.++++++++|+..+ .|. -++|-+. +.++++++.-+.-=.|-...+.. ..+-..+--|....+.++
T Consensus 43 l~~~K~~~~v~a~~~~v~~~l-~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~ 117 (197)
T cd08869 43 LRLWRASTEVEAPPEEVLQRI-LRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPK 117 (197)
T ss_pred EEEEEEEEEeCCCHHHHHHHH-HHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCC
Confidence 345788999999999999985 443 4799985 77888876643211122222211 111123333333333333
Q ss_pred ce--EEEEEEec-CCccccC---cceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 86 FM--CKYRFIEG-DGFIDSM---LEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 86 ~~--~~y~~~eG-~~~~~~~---~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
.. +..+=++- +..+. + ...+.+-+.++|.++++|.+++.+..++.+.
T Consensus 118 g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 118 GACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred CcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 22 22222321 11111 1 2445677888998778899999999999764
No 67
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=69.04 E-value=56 Score=25.90 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=69.0
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEe-----eCCceeEEEEEEEeec
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYI-----EGGEIRYTKHRVDALD 82 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~-----~g~~~~~~kErl~~~D 82 (167)
+...+..+++++++++++..++ -|- .++|.+. +.+.++++.-+. ....+.+. +...-..+--|.-..|
T Consensus 50 ~l~~~r~~~~i~a~~~~vl~~l-ld~---~~~Wd~~-~~e~~vIe~ld~--~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~ 122 (204)
T cd08908 50 PLRLWRTTIEVPAAPEEILKRL-LKE---QHLWDVD-LLDSKVIEILDS--QTEIYQYVQNSMAPHPARDYVVLRTWRTN 122 (204)
T ss_pred CcEEEEEEEEeCCCHHHHHHHH-Hhh---HHHHHHH-hhheEeeEecCC--CceEEEEEccCCCCCCCcEEEEEEEEEEe
Confidence 3467899999999999999996 444 4689985 556666655421 11222222 1111123333333333
Q ss_pred CCCceEEEEEE--ecCCcccc--CcceEEEEEEEeecCCCccEEEEEEEEEecCC
Q 031031 83 KEKFMCKYRFI--EGDGFIDS--MLEFLTHEIKFEGYGQGGCVCKITCDFKAKEG 133 (167)
Q Consensus 83 ~~~~~~~y~~~--eG~~~~~~--~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~ 133 (167)
..+..+..... +-+-++.. ....+.+.+.++|.++|+|.++..+..++.+.
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred CCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 44433322222 11112210 23446777889998888999999998888764
No 68
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=65.46 E-value=55 Score=24.47 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=30.1
Q ss_pred EEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCC
Q 031031 12 VTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGD 54 (167)
Q Consensus 12 ~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGd 54 (167)
++.++..+-+.+.+-.+| +|..-++|+++| .++++. .+++
T Consensus 3 ~~~~i~t~H~~e~v~~IL-SDP~F~lp~l~p-~ik~v~-~~~~ 42 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTIL-SDPEFVLPRLFP-PIKSVK-VEEN 42 (136)
T ss_dssp EEEEEE-SS-HHHHHHHH-T-HHHHHHHHST-TEEEEE--STT
T ss_pred EEEEeccCCChHheEEEe-cCCccEecccCC-ceEEEE-ecCC
Confidence 467777888999999996 999999999999 588988 4444
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=54.93 E-value=91 Score=23.59 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=87.6
Q ss_pred ceeEEEEEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCC--ce---eEEEEEEEee-
Q 031031 8 NTTRVTQSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGG--EI---RYTKHRVDAL- 81 (167)
Q Consensus 8 ~~~~~~~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~--~~---~~~kErl~~~- 81 (167)
+...+.....+.++++++...+ .+-.. .|-+ .+.++++++--..-..|..+.+..-. +. ..+--|...-
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~-~~~~~---~Wd~-~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~ 118 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDL-LDDRE---QWDK-MCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKD 118 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHH-HCGGG---HHST-TEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEEC
T ss_pred cceEEEEEEEEcCChHHHHHHH-HhhHh---hccc-chhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEe
Confidence 4566788889999999888775 33332 7888 47788888764322566666554322 31 1221122222
Q ss_pred cCCCceEEEEEEecCCccc--c---CcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHh-hhhHhhHHHHH
Q 031031 82 DKEKFMCKYRFIEGDGFID--S---MLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELV-KHKPLGMYEVV 155 (167)
Q Consensus 82 D~~~~~~~y~~~eG~~~~~--~---~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~k~i 155 (167)
.+....+..+=++.+..+. + .-..+.+.+.++|.+++.|.|.+...-++.+.. |.-.++.+ ......+++.+
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHH
Confidence 3333344443344332221 0 123566788899998888999999888887642 23333332 34446777777
Q ss_pred HHHHhhCC
Q 031031 156 EAHLKAYP 163 (167)
Q Consensus 156 e~~l~~~~ 163 (167)
-++|.+++
T Consensus 197 ~~~~~~~~ 204 (206)
T PF01852_consen 197 RKALKKQK 204 (206)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhc
Confidence 77777765
No 70
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=51.00 E-value=33 Score=24.51 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=32.5
Q ss_pred eeEEEEEEEEec-CHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEE
Q 031031 9 TTRVTQSFVTQV-SPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIK 61 (167)
Q Consensus 9 ~~~~~~ei~i~a-pa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR 61 (167)
.++.+.+|...+ --+.+|+..+.||.. +.-|..+ .+++.+...+||.|+
T Consensus 41 ~~~~~v~I~Tsv~Gf~~~WqaVl~~f~~---r~~~~~~-~i~InD~GATP~VV~ 90 (105)
T PRK02103 41 GGECEVEIRTAAVGFGAVWQAVVADFVE---RRSPGGL-RISINDGGARPDTVS 90 (105)
T ss_pred CCeEEEEEEecccCcHHHHHHHHHHHHh---hCCCCcc-EEEEeCCCCCchhhh
Confidence 466666666555 567999997678776 3334335 677776666787664
No 71
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=50.52 E-value=28 Score=28.65 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=28.4
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+.+.+..+.....+..++..+....+.+.+|+.+.++|+-|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 45566655433222222223346677899999999999999866
No 72
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=48.35 E-value=34 Score=24.18 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=31.4
Q ss_pred ceeEEEEEEEEec-CHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEE
Q 031031 8 NTTRVTQSFVTQV-SPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIK 61 (167)
Q Consensus 8 ~~~~~~~ei~i~a-pa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR 61 (167)
..++.+.+|...+ --+.+|+..+.||.. +.-|..+ .+++.+...+||.|+
T Consensus 36 ~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~---~~~~~~~-~i~InD~GATP~VV~ 86 (99)
T PRK01220 36 DAGKLSIQVVTSVNGSAARWKALFERFFT---AQTPPAA-NIDIHDFGATPGVVR 86 (99)
T ss_pred CCCcEEEEEEecccCcHHHHHHHHHHHHh---hCCCCcc-EEEEeCCCCCcHhhh
Confidence 3455555555544 457899996677776 3334334 677766656787664
No 73
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=43.07 E-value=54 Score=23.14 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=31.5
Q ss_pred eeEEEEEEEEec-CHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEE
Q 031031 9 TTRVTQSFVTQV-SPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIK 61 (167)
Q Consensus 9 ~~~~~~ei~i~a-pa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR 61 (167)
.++.+..|...+ --+.+|+..+.||.. +.-|..+ .+++.+...+||.|+
T Consensus 39 ~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~---~~~~~~~-~i~InD~GATP~VV~ 88 (98)
T TIGR03130 39 GGKTEVRITTSVDGFGAVWQAVIERFFA---RYPLAGL-QIEINDFGATPAVVS 88 (98)
T ss_pred CCeEEEEEEecccCcHHHHHHHHHHHHh---hCCCCcc-EEEEecCCCCchhhh
Confidence 566666666555 567899996677776 3323334 677776656777664
No 74
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.63 E-value=41 Score=27.98 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=28.5
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
++.+.|++.-+....++.-++..+.+..+.+.+|+.+.++|+-|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 47777766433211111111236778899999999999999866
No 75
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=42.22 E-value=43 Score=27.74 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=28.2
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
+|.+.+.+.... +.+++. .+....+.+.+|+++.++|+-|
T Consensus 248 ~~~i~~~~~~~~-~~~~~~---~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 248 KFELTVRPAMAT-ELSVDP---EQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred eEEEEEecCCCC-CCCCCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 366777654332 223344 6778899999999999999865
No 76
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=38.94 E-value=74 Score=24.96 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=42.3
Q ss_pred EecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEEEecCC
Q 031031 18 TQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRFIEGDG 97 (167)
Q Consensus 18 i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~eG~~ 97 (167)
++.+..++|.- .++ .+.--|..| .+.|... |.. ....+++..+..=.+.=+-|-.+|.....+.|++-|-++
T Consensus 3 ~~i~v~K~W~d----~~n-~~~~RP~sI-~v~L~~n-g~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWDD----YDD-KFKKRPAKI-SVQLLAN-GEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEECC----CCC-CCCCCCCEE-EEEEEeC-Cee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 34555667743 333 344567666 5777743 221 345566654443223335567788888999999988764
No 77
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.11 E-value=1.5e+02 Score=21.19 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=56.5
Q ss_pred EEEEEecCHHHHHHHHhcccccccccccccceeeEEEEcCCCCcceEEEEEEeeCCceeEEEEEEEeecCCCceEEEEEE
Q 031031 14 QSFVTQVSPSRMFKALILDSHNICPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGEIRYTKHRVDALDKEKFMCKYRFI 93 (167)
Q Consensus 14 ~ei~i~apa~~vW~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~~~ 93 (167)
.+..+++||+.+++.+......-+.+.-...+..-++ +| .-=.=++..+. .++=+++.+ ..++.|.+++.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~---~~~v~It~~-~~~~~Y~~~~~ 72 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKR---EAKVKITEY-EPNKRYAATFS 72 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCC---EEEEEEEEE-cCCCEEEEEEE
Confidence 4567999999999986322211011111111100011 12 11111112222 444457777 45668888874
Q ss_pred ecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecC
Q 031031 94 EGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKE 132 (167)
Q Consensus 94 eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~ 132 (167)
. ....++.+.++.|.++|.|.|.-+=++...+
T Consensus 73 s-------~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 73 S-------SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred e-------cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 2 2456889999999988878888777776654
No 78
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.59 E-value=56 Score=26.85 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=28.3
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+.|++..... ++++. .+.+..+.+.+|+++.++|+-|
T Consensus 238 ~y~i~~~~~~~~~-~~~~~---~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTDV---EVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCC-CCCCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 5777776543221 22344 6778899999999999999865
No 79
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.45 E-value=67 Score=26.62 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=28.4
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
++.+.+++..... +.+++ .+....+.+.+|+++.++|+-|
T Consensus 248 ~y~i~i~~~~~~~-~~~~i---~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADF-PSDDV---IADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCC-CCCCH---HHHHHHHHHHHHHHHHcCcHhh
Confidence 4667776543322 23344 6788899999999999999865
No 80
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.48 E-value=64 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+.+.+..... +.+++ .+.+..+.+.+|+++.++|+-|
T Consensus 232 ~~~i~i~~~~~~~-~~~~~---~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSF-PSEDA---QADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCC-CCCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 4666665543222 23344 6788999999999999999865
No 81
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=32.97 E-value=73 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+.+++..... +.++. .+.+..+.+.+|+++.++|+-|
T Consensus 245 ~~~i~~~~~~~~~-~~~~~---~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDF-PGDDE---IAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCC-CCCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 4666776643321 22333 5778899999999999999865
No 82
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.27 E-value=81 Score=26.15 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
++.+.+++..... +.++. .+....+.+.+|+++.++|+-|
T Consensus 251 ~~~i~~~~~~~~~-~~~d~---~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSP-PLDDA---EATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCC-CCCCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 4777776654322 22333 5777888899999999999865
No 83
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=30.40 E-value=99 Score=25.37 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.0
Q ss_pred hhhhHhhHHHHHHHHHhhCCcCc
Q 031031 144 VKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 144 ~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
..+....+.+.+|+++.++|+-|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 36778899999999999999865
No 84
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.02 E-value=83 Score=26.09 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=26.5
Q ss_pred EEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 124 ITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 124 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
+.+.+++.....+ .++. .+.+..+.+.+|+++..+|+-|
T Consensus 240 y~~~~~~~~~~~~-~~~~---~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 240 FALHVQPADPAVA-DPDP---LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred EEEEEecCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 5555555322222 2333 6778899999999999999865
No 85
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=29.22 E-value=92 Score=25.92 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=28.2
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
++.+.+++..... +.++. .+....+.+.+|+++.++|+-|
T Consensus 257 ~~~i~~~~~~~~~-~~~d~---~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDL-LSADD---ETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCC-CCCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 4777776644322 22333 6778899999999999999865
No 86
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=28.22 E-value=42 Score=27.70 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHhhCCcC
Q 031031 149 LGMYEVVEAHLKAYPQL 165 (167)
Q Consensus 149 ~~~~k~ie~~l~~~~~~ 165 (167)
-++|++|+-||++||..
T Consensus 220 D~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPGL 236 (258)
T ss_pred chHHHHHHHHHHHcccC
Confidence 48999999999999964
No 87
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=26.75 E-value=1.2e+02 Score=22.61 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=19.7
Q ss_pred hhhHhhHHHHHHHHHhhCCcCc
Q 031031 145 KHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 145 ~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+..+.+.+|+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 6888899999999999999865
No 88
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.96 E-value=1.1e+02 Score=25.40 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=26.8
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+.+++.-...+ .++. .+....+.+.+|+++.++|+-|
T Consensus 249 ~~~i~~~~~~~~~~-~~~~---~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFP-GESE---EADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 47777765433222 2333 3456899999999999999855
No 89
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=24.33 E-value=1.2e+02 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=26.8
Q ss_pred EEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 123 KITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 123 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
++.+.|.+... +.++.. .+....+.+.+|+++.++|+-|
T Consensus 227 ~y~~~~~~~~~--~~~~~~---~~~t~~~~~~lE~~Ir~~PeQW 265 (289)
T PRK08905 227 GYRLHLRPVQE--PLPGDK---AADAAVINAEIERLIRRFPTQY 265 (289)
T ss_pred cEEEEEecCCC--CCCCCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 35556655432 123344 5778899999999999999855
No 90
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=23.08 E-value=2.5e+02 Score=19.28 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=25.9
Q ss_pred cccccccceeeEEEEcCCCCcceEEEEEEeeCCc---eeEEEEEEEeecC
Q 031031 37 CPRLLFSSIKSIEYFEGDGDVGTIKQINYIEGGE---IRYTKHRVDALDK 83 (167)
Q Consensus 37 ~p~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~ 83 (167)
.|+|-+...+.+.+.||+ +.+....-..|.| ..|+++....++.
T Consensus 2 ~~~~~~~~~~~v~V~eG~---~~~L~C~pP~g~P~P~i~W~~~~~~~i~~ 48 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGD---SVVLPCNPPKSAVPLRIYWMNSDLLHITQ 48 (95)
T ss_pred CCcCCccccceeEEecCC---CEEEEecCCCCCCCCEEEEECCCCccccc
Confidence 356666667778888887 3333443334433 5788776554543
No 91
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=22.44 E-value=1.5e+02 Score=24.12 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=29.4
Q ss_pred EEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 122 CKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 122 v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
..|.+.+++.-.....+ +. .+.+..+.+.+|+.+.++|+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~-~~---~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE-DI---EELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc-hH---HHHHHHHHHHHHHHHHcChHhh
Confidence 56777777754332222 33 6788999999999999999854
No 92
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=22.42 E-value=2.6e+02 Score=19.00 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=33.6
Q ss_pred EEEEEecCCccccCcceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCC
Q 031031 89 KYRFIEGDGFIDSMLEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYP 163 (167)
Q Consensus 89 ~y~~~eG~~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 163 (167)
.|++++-+ |.+-.+.|-++... ++++|=-.+.+.......++.+.+. ...-..+.++...||..+|
T Consensus 14 G~~IL~rN------~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN------WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE------EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee------ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 35665543 66666888888765 4455544444444332222233331 3445678889999999998
No 93
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=2.1e+02 Score=24.69 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=39.2
Q ss_pred cccccceeeEEEEcCCCCcceEEEEEEeeCC-------------ceeEEEEEEEeecCCCc---eEEEEEEecCCccccC
Q 031031 39 RLLFSSIKSIEYFEGDGDVGTIKQINYIEGG-------------EIRYTKHRVDALDKEKF---MCKYRFIEGDGFIDSM 102 (167)
Q Consensus 39 ~~~P~~v~s~e~~eGdg~~GsvR~~~~~~g~-------------~~~~~kErl~~~D~~~~---~~~y~~~eG~~~~~~~ 102 (167)
.|.|.+-.+.+++.---.-| ||.+++...- ....-.|++-.+|+-|. +++|.+
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm---------- 298 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM---------- 298 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee----------
Confidence 56676666666654322224 8888876321 11222344444554441 122222
Q ss_pred cceEEEEEEEeecCCCccEEEEEEEEEe
Q 031031 103 LEFLTHEIKFEGYGQGGCVCKITCDFKA 130 (167)
Q Consensus 103 ~~~y~~ti~v~p~~~g~s~v~W~~~y~~ 130 (167)
++|+- ...+++||+--|.+.|..
T Consensus 299 ----tGtiL-sStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 299 ----TGTIL-SSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ----eeeEE-eecCCCceeeehhhhhhh
Confidence 22322 234567899999988754
No 94
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=21.97 E-value=2.3e+02 Score=23.35 Aligned_cols=46 Identities=4% Similarity=-0.075 Sum_probs=35.2
Q ss_pred cceEEEEEEEeecCCCccEEEEEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHH
Q 031031 103 LEFLTHEIKFEGYGQGGCVCKITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHL 159 (167)
Q Consensus 103 ~~~y~~ti~v~p~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 159 (167)
-..+++|++-++.++=.+.++|.+.|...+- +++.+.|+++++..-
T Consensus 91 aNyikGtV~pvpgGg~~g~as~Kl~F~~GG~-----------ieFgq~~l~~~s~a~ 136 (261)
T KOG3294|consen 91 ANYIKGTVQPVPGGGWEGEASFKLTFNEGGC-----------IEFGQLLLQAASRAS 136 (261)
T ss_pred cceeeeeEeecCCCCccceeEEEEEecCCCc-----------hhHHHHHHHHHHHHH
Confidence 4568899998887643678899999987651 678888888887754
No 95
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=21.85 E-value=1.6e+02 Score=20.61 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.6
Q ss_pred eecCCCceEEEEEEecCC
Q 031031 80 ALDKEKFMCKYRFIEGDG 97 (167)
Q Consensus 80 ~~D~~~~~~~y~~~eG~~ 97 (167)
-+|..+|.|+|.-++|-.
T Consensus 38 YId~~~RtYtw~PI~gT~ 55 (94)
T PF08473_consen 38 YIDEVNRTYTWTPINGTD 55 (94)
T ss_pred eeeeeceeEEEeccCCCc
Confidence 588999999999998854
No 96
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.45 E-value=1.6e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.3
Q ss_pred hhhHhhHHHHHHHHHhhCCcCc
Q 031031 145 KHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 145 ~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
.+.+..+.+.+|+++.++|+-|
T Consensus 254 ~~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 254 DLDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHHcCcHhH
Confidence 4668899999999999999865
No 97
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=21.33 E-value=1.2e+02 Score=18.55 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.2
Q ss_pred hHHhhhhHhhHHHHHHHHHhhCC
Q 031031 141 IELVKHKPLGMYEVVEAHLKAYP 163 (167)
Q Consensus 141 ~~~~~~~~~~~~k~ie~~l~~~~ 163 (167)
.+.+.+.+...++.+|.+|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 45567888899999999999887
No 98
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.84 E-value=1.3e+02 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred EEEEEEecCCCcCCchhhHHhhhhHhhHHHHHHHHHhhCCcCc
Q 031031 124 ITCDFKAKEGVEIKGIDIELVKHKPLGMYEVVEAHLKAYPQLY 166 (167)
Q Consensus 124 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 166 (167)
+.+.+.+.-.. +..++ ..+....+.+.+|+++.++|+-|
T Consensus 236 y~v~~~~~~~~-~~~~~---~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PSAED---VAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-CchhH---HHHHHHHHHHHHHHHHHhChHHH
Confidence 66666654322 11223 37788999999999999999855
Done!