Your job contains 1 sequence.
>031032
MTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI
RGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD
ESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031032
(167 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077818 - symbol:AT3G08620 "AT3G08620" species... 771 1.5e-76 1
TAIR|locus:2064097 - symbol:AT2G38610 "AT2G38610" species... 762 1.3e-75 1
UNIPROTKB|Q75GR5 - symbol:SPIN1 "KH domain-containing pro... 718 6.1e-71 1
TAIR|locus:2161845 - symbol:AT5G56140 "AT5G56140" species... 582 1.6e-56 1
TAIR|locus:2024326 - symbol:AT1G09660 "AT1G09660" species... 516 1.5e-49 1
ZFIN|ZDB-GENE-081028-54 - symbol:qkib "QKI, KH domain con... 342 4.2e-31 1
ZFIN|ZDB-GENE-040426-1462 - symbol:qki2 "QKI, KH domain c... 342 4.2e-31 1
UNIPROTKB|F1N7N1 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|Q5W9D7 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|F1PLY2 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|F1PX61 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|J9NVZ6 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|Q9GMY1 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|F5GXS8 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|F5GYM3 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|Q96PU8 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|F1SBW4 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
UNIPROTKB|Q5W9D5 - symbol:QKI "Protein quaking" species:9... 340 6.9e-31 1
MGI|MGI:97837 - symbol:Qk "quaking" species:10090 "Mus mu... 340 6.9e-31 1
RGD|1584886 - symbol:Qk "quaking" species:10116 "Rattus n... 340 6.9e-31 1
UNIPROTKB|D4A2X0 - symbol:Qk "Protein Qk" species:10116 "... 340 6.9e-31 1
UNIPROTKB|F1LMH5 - symbol:Qk "Protein Qk" species:10116 "... 340 6.9e-31 1
UNIPROTKB|F1NWU9 - symbol:QKI "Protein quaking" species:9... 339 8.8e-31 1
UNIPROTKB|F1NWV0 - symbol:QKI "Protein quaking" species:9... 339 8.8e-31 1
UNIPROTKB|Q9YH18 - symbol:QKI "Protein quaking" species:9... 339 8.8e-31 1
ZFIN|ZDB-GENE-990415-230 - symbol:qkia "QKI, KH domain co... 322 8.2e-29 1
WB|WBGene00001595 - symbol:gld-1 species:6239 "Caenorhabd... 319 1.2e-28 1
FB|FBgn0264491 - symbol:how "held out wings" species:7227... 318 1.5e-28 1
UNIPROTKB|G5EFF1 - symbol:asd-2 "Protein ASD-2, isoform c... 304 4.5e-27 1
WB|WBGene00006423 - symbol:asd-2 species:6239 "Caenorhabd... 304 9.9e-27 1
UNIPROTKB|E1BVW8 - symbol:KHDRBS2 "Uncharacterized protei... 287 2.9e-25 1
UNIPROTKB|E1BP48 - symbol:KHDRBS2 "Uncharacterized protei... 287 2.9e-25 1
UNIPROTKB|E2QWN2 - symbol:KHDRBS2 "Uncharacterized protei... 287 2.9e-25 1
UNIPROTKB|Q5VWX1 - symbol:KHDRBS2 "KH domain-containing, ... 287 2.9e-25 1
UNIPROTKB|F1RZV6 - symbol:KHDRBS2 "Uncharacterized protei... 287 2.9e-25 1
MGI|MGI:2159649 - symbol:Khdrbs2 "KH domain containing, R... 284 5.9e-25 1
RGD|621738 - symbol:Khdrbs2 "KH domain containing, RNA bi... 283 7.6e-25 1
UNIPROTKB|F1P522 - symbol:QKI "Protein quaking" species:9... 279 2.0e-24 1
ZFIN|ZDB-GENE-061013-497 - symbol:khdrbs2 "KH domain cont... 278 2.6e-24 1
ZFIN|ZDB-GENE-040426-2344 - symbol:khdrbs1b "KH domain co... 259 2.6e-22 1
CGD|CAL0004717 - symbol:orf19.329 species:5476 "Candida a... 262 3.8e-22 1
UNIPROTKB|F1NKE9 - symbol:KHDRBS3 "Uncharacterized protei... 253 1.1e-21 1
MGI|MGI:1313312 - symbol:Khdrbs3 "KH domain containing, R... 253 1.1e-21 1
RGD|620921 - symbol:Khdrbs3 "KH domain containing, RNA bi... 253 1.1e-21 1
UNIPROTKB|A4FV24 - symbol:KHDRBS3 "Uncharacterized protei... 252 1.5e-21 1
UNIPROTKB|E2RLG8 - symbol:KHDRBS3 "Uncharacterized protei... 252 1.5e-21 1
UNIPROTKB|E5RG12 - symbol:KHDRBS3 "KH domain-containing, ... 252 1.5e-21 1
UNIPROTKB|E5RJZ9 - symbol:KHDRBS3 "KH domain-containing, ... 252 1.5e-21 1
UNIPROTKB|O75525 - symbol:KHDRBS3 "KH domain-containing, ... 252 1.5e-21 1
UNIPROTKB|F1RRV9 - symbol:KHDRBS3 "Uncharacterized protei... 252 1.5e-21 1
UNIPROTKB|I3LAN7 - symbol:LOC100625959 "Uncharacterized p... 252 1.5e-21 1
UNIPROTKB|F5H8C8 - symbol:QKI "Protein quaking" species:9... 245 8.0e-21 1
UNIPROTKB|E1C4N4 - symbol:KHDRBS1 "KH domain-containing, ... 243 1.3e-20 1
DICTYBASE|DDB_G0293554 - symbol:sf1 "CCHC-type zinc finge... 249 1.5e-20 1
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi... 251 2.6e-20 1
UNIPROTKB|F1NLF2 - symbol:KHDRBS1 "KH domain-containing, ... 243 4.1e-20 1
UNIPROTKB|Q8UUW7 - symbol:KHDRBS1 "KH domain-containing, ... 243 4.1e-20 1
WB|WBGene00019509 - symbol:K07H8.9 species:6239 "Caenorha... 238 4.4e-20 1
MGI|MGI:893579 - symbol:Khdrbs1 "KH domain containing, RN... 242 5.7e-20 1
RGD|621459 - symbol:Khdrbs1 "KH domain containing, RNA bi... 242 5.7e-20 1
UNIPROTKB|J9NRH2 - symbol:KHDRBS1 "Uncharacterized protei... 239 1.0e-19 1
SGD|S000004106 - symbol:MSL5 "Component of the commitment... 240 1.2e-19 1
UNIPROTKB|Q29RQ2 - symbol:KHDRBS1 "Uncharacterized protei... 239 1.2e-19 1
UNIPROTKB|Q07666 - symbol:KHDRBS1 "KH domain-containing, ... 239 1.2e-19 1
UNIPROTKB|I3LP11 - symbol:LOC100739434 "Uncharacterized p... 239 1.2e-19 1
UNIPROTKB|F1PLD5 - symbol:KHDRBS1 "Uncharacterized protei... 239 1.3e-19 1
WB|WBGene00022101 - symbol:Y69A2AR.32 species:6239 "Caeno... 236 1.4e-19 1
ASPGD|ASPL0000074583 - symbol:AN10615 species:162425 "Eme... 225 2.7e-19 2
WB|WBGene00044674 - symbol:B0280.17 species:6239 "Caenorh... 229 4.0e-19 1
ZFIN|ZDB-GENE-000210-25 - symbol:khdrbs1a "KH domain cont... 231 4.1e-19 1
FB|FBgn0034739 - symbol:CG3927 species:7227 "Drosophila m... 228 5.1e-19 1
FB|FBgn0022987 - symbol:qkr54B "quaking related 54B" spec... 230 1.1e-18 1
RGD|620645 - symbol:Sf1 "splicing factor 1" species:10116... 223 1.7e-18 1
FB|FBgn0034659 - symbol:CG4021 species:7227 "Drosophila m... 221 2.8e-18 1
ZFIN|ZDB-GENE-030131-2492 - symbol:sf1 "splicing factor 1... 220 3.1e-18 2
FB|FBgn0022984 - symbol:qkr58E-3 "quaking related 58E-3" ... 219 4.6e-18 1
WB|WBGene00013808 - symbol:sfa-1 species:6239 "Caenorhabd... 228 5.9e-18 1
UNIPROTKB|B4DX42 - symbol:SF1 "Splicing factor 1" species... 223 6.7e-18 1
UNIPROTKB|K7GNY3 - symbol:KHDRBS3 "Uncharacterized protei... 217 7.5e-18 1
UNIPROTKB|F1LM37 - symbol:Sf1 "Protein Sf1" species:10116... 223 1.3e-17 1
UNIPROTKB|E2RRT4 - symbol:SF1 "Uncharacterized protein" s... 223 1.7e-17 1
UNIPROTKB|A2VDM7 - symbol:SF1 "Uncharacterized protein" s... 223 1.7e-17 1
UNIPROTKB|Q15637 - symbol:SF1 "Splicing factor 1" species... 223 1.7e-17 1
UNIPROTKB|F1RQR0 - symbol:SF1 "Uncharacterized protein" s... 223 1.7e-17 1
MGI|MGI:1095403 - symbol:Sf1 "splicing factor 1" species:... 223 1.8e-17 1
UNIPROTKB|F1LSC3 - symbol:Sf1 "Protein Sf1" species:10116... 223 1.8e-17 1
POMBASE|SPCC962.06c - symbol:bpb1 "zinc finger splicing f... 222 1.9e-17 1
FB|FBgn0034740 - symbol:nsr "novel spermatogenesis regula... 212 3.9e-17 1
FB|FBgn0034731 - symbol:CG10384 species:7227 "Drosophila ... 215 6.5e-17 1
FB|FBgn0025571 - symbol:SF1 "Splicing factor 1" species:7... 218 8.6e-17 1
FB|FBgn0022986 - symbol:qkr58E-1 "quaking related 58E-1" ... 203 8.2e-16 1
UNIPROTKB|H0YAQ3 - symbol:KHDRBS3 "KH domain-containing, ... 195 1.6e-15 1
FB|FBgn0022985 - symbol:qkr58E-2 "quaking related 58E-2" ... 200 2.0e-15 1
GENEDB_PFALCIPARUM|PFF1135w - symbol:PFF1135w "transcript... 201 3.8e-15 1
UNIPROTKB|C6KT72 - symbol:PFF1135w "Transcription or spli... 201 3.8e-15 1
WB|WBGene00013325 - symbol:Y57G11C.36 species:6239 "Caeno... 181 2.0e-13 1
UNIPROTKB|H0YAQ1 - symbol:KHDRBS3 "KH domain-containing, ... 143 5.2e-10 1
>TAIR|locus:2077818 [details] [associations]
symbol:AT3G08620 "AT3G08620" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC012562 eggNOG:COG5176 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 ProtClustDB:CLSN2683215 EMBL:AK117438
IPI:IPI00536963 RefSeq:NP_187474.2 UniGene:At.40250
ProteinModelPortal:Q8GYR4 SMR:Q8GYR4 PaxDb:Q8GYR4 PRIDE:Q8GYR4
EnsemblPlants:AT3G08620.1 GeneID:820009 KEGG:ath:AT3G08620
TAIR:At3g08620 InParanoid:Q9C9Z4 OMA:IFRITGM PhylomeDB:Q8GYR4
Genevestigator:Q8GYR4 Uniprot:Q8GYR4
Length = 283
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 145/167 (86%), Positives = 159/167 (95%)
Query: 1 MTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 60
M M+WQ APASPSSY VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI
Sbjct: 117 MAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 176
Query: 61 RGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD 120
RGKGSIKDP+KE+KL+G+PGYEHLN+ LHILIEADLP +IVDI+LRQAQEIIEEL+KPVD
Sbjct: 177 RGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVD 236
Query: 121 ESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 167
ESQDYIKRQQLRELA+LNSN RE+SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 237 ESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>TAIR|locus:2064097 [details] [associations]
symbol:AT2G38610 "AT2G38610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC005499 eggNOG:COG5176 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 EMBL:AY042804 EMBL:AY064682 EMBL:AY065112
EMBL:BT000084 IPI:IPI00520364 PIR:B84807 RefSeq:NP_181395.1
RefSeq:NP_850296.1 UniGene:At.23456 ProteinModelPortal:Q9ZVI3
SMR:Q9ZVI3 IntAct:Q9ZVI3 PaxDb:Q9ZVI3 PRIDE:Q9ZVI3
EnsemblPlants:AT2G38610.1 EnsemblPlants:AT2G38610.2 GeneID:818443
KEGG:ath:AT2G38610 TAIR:At2g38610 InParanoid:Q9ZVI3 OMA:IMRVSSI
PhylomeDB:Q9ZVI3 ProtClustDB:CLSN2683215 Genevestigator:Q9ZVI3
Uniprot:Q9ZVI3
Length = 286
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 151/169 (89%), Positives = 159/169 (94%)
Query: 1 MTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 60
MTMDWQ AP SPSSYTVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+I
Sbjct: 118 MTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFI 177
Query: 61 RGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD 120
RGKGSIKDP+KEDKLRGRPGYEHLN+ LHILIEADLPA+IV+IRLRQAQEIIEELLKPVD
Sbjct: 178 RGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVD 237
Query: 121 ESQDYIKRQQLRELAMLNSN-FREDSPGPSG--SVSPFNSSGMKRAKTG 166
ESQD+IKRQQLRELA+LNSN RE+SPGPSG SVSPFNSSG KR KTG
Sbjct: 238 ESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285
>UNIPROTKB|Q75GR5 [details] [associations]
symbol:SPIN1 "KH domain-containing protein SPIN1"
species:39947 "Oryza sativa Japonica Group" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048577 "negative regulation of short-day
photoperiodism, flowering" evidence=IMP] [GO:0048579 "negative
regulation of long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 GO:GO:0003723 GO:GO:0009908 GO:GO:0048577 HSSP:Q9BW01
eggNOG:COG5176 EMBL:CM000140 GO:GO:0048579 KO:K14945 OMA:IMRVSSI
EMBL:AC139172 EMBL:AK065405 RefSeq:NP_001051685.1 UniGene:Os.5675
ProteinModelPortal:Q75GR5 EnsemblPlants:LOC_Os03g60110.1
GeneID:4334557 KEGG:dosa:Os01t0886300-01 KEGG:dosa:Os03t0815700-01
KEGG:osa:4334557 Gramene:Q75GR5 ProtClustDB:CLSN2694450
Uniprot:Q75GR5
Length = 281
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 134/166 (80%), Positives = 153/166 (92%)
Query: 2 TMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 61
+MDWQ AP SPSS+ VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IR
Sbjct: 117 SMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIR 176
Query: 62 GKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDE 121
GKGSIKDP KEDKLRG+PGYEHL+DPLHILIEA+ PA+I+D RLR AQE+IEELLKPVDE
Sbjct: 177 GKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDE 236
Query: 122 SQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 167
SQD+ KRQQLRELAMLNS REDSP P GSVSPF++ GMKRAKTG+
Sbjct: 237 SQDFYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281
>TAIR|locus:2161845 [details] [associations]
symbol:AT5G56140 "AT5G56140" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003723 EMBL:AB011476
eggNOG:COG5176 KO:K14945 HSSP:Q32NN2 EMBL:AY080852 EMBL:BT000873
IPI:IPI00544767 RefSeq:NP_200425.1 UniGene:At.29404
ProteinModelPortal:Q9FKT4 SMR:Q9FKT4 PRIDE:Q9FKT4
EnsemblPlants:AT5G56140.1 GeneID:835713 KEGG:ath:AT5G56140
TAIR:At5g56140 HOGENOM:HOG000238548 InParanoid:Q9FKT4 OMA:AKRTIRV
PhylomeDB:Q9FKT4 ProtClustDB:CLSN2916672 Genevestigator:Q9FKT4
Uniprot:Q9FKT4
Length = 315
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 108/162 (66%), Positives = 133/162 (82%)
Query: 4 DWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 63
+W ++P S S KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+
Sbjct: 151 NWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGR 210
Query: 64 GSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQ 123
GSIKDP KE+ +RG+PGYEHLN+PLHIL+EA+LP IVD RL QA+EI+++LL P++E+
Sbjct: 211 GSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETH 270
Query: 124 DYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKT 165
D K+QQLRELA+LN RE+ SGSVSP+NS GMKRAKT
Sbjct: 271 DMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312
>TAIR|locus:2024326 [details] [associations]
symbol:AT1G09660 "AT1G09660" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003723
eggNOG:COG5176 EMBL:AC000132 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 EMBL:AK118683 EMBL:AF419590 EMBL:AY079111
EMBL:BX842524 EMBL:AK175370 EMBL:AK175796 EMBL:AK176267
EMBL:AK176765 EMBL:AK176899 IPI:IPI00517028 IPI:IPI00535968
PIR:D86230 PIR:E86230 RefSeq:NP_172437.2 RefSeq:NP_973800.1
UniGene:At.10221 ProteinModelPortal:Q8GWR3 SMR:Q8GWR3 IntAct:Q8GWR3
EnsemblPlants:AT1G09660.1 GeneID:837494 KEGG:ath:AT1G09660
TAIR:At1g09660 InParanoid:Q8GWR3 OMA:VEASTQC PhylomeDB:Q8GWR3
ProtClustDB:CLSN2690390 Genevestigator:Q8GWR3 Uniprot:Q8GWR3
Length = 298
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 99/167 (59%), Positives = 127/167 (76%)
Query: 5 WQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 64
W P P+ VK+++RL++PVD YP++NFVGR+LGPRGNSLKRVE T CRV+IRG+G
Sbjct: 133 WIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRG 192
Query: 65 SIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQD 124
S+KD KE+KL+G+PGYEHL +PLH+LIEA+LP +I++ RL A +E LLKP+DES D
Sbjct: 193 SVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMD 252
Query: 125 YIKRQQLRELAMLNSNFREDSPGPS------GSVSPFNSSGMKRAKT 165
+ KR+QL+ELA LN RE+SP PS S+SPFNS KRAKT
Sbjct: 253 HYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296
>ZFIN|ZDB-GENE-081028-54 [details] [associations]
symbol:qkib "QKI, KH domain containing, RNA binding
b" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
SMART:SM00322 ZFIN:ZDB-GENE-081028-54 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:CABZ01010714 EMBL:CABZ01010715
EMBL:CU019624 EMBL:CU467873 EMBL:CU915796 EMBL:FP325125
IPI:IPI00898626 Ensembl:ENSDART00000018737 Uniprot:F1QTT6
Length = 345
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 66/146 (45%), Positives = 101/146 (69%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E + +LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVNKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 REDS-PGPSGSVSPFNSSGMKRAKTG 166
R+ + P+ + S S+ R TG
Sbjct: 205 RDANIKSPALAFSLAASAQAPRIITG 230
>ZFIN|ZDB-GENE-040426-1462 [details] [associations]
symbol:qki2 "QKI, KH domain containing, RNA
binding 2" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0017124 "SH3 domain binding"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1462 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0051028 eggNOG:COG5176
GeneTree:ENSGT00550000074434 KO:K14945 EMBL:AB086654 EMBL:BC061709
EMBL:BC065344 IPI:IPI00501345 IPI:IPI00760231 RefSeq:NP_957136.2
UniGene:Dr.133657 ProteinModelPortal:Q6P104 SMR:Q6P104
Ensembl:ENSDART00000027034 GeneID:393815 KEGG:dre:393815 CTD:393815
HOGENOM:HOG000019831 HOVERGEN:HBG093883 OMA:GMAFPTK
OrthoDB:EOG4RFKSZ NextBio:20814805 Bgee:Q6P104 Uniprot:Q6P104
Length = 319
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 65/146 (44%), Positives = 102/146 (69%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 REDS-PGPSGSVSPFNSSGMKRAKTG 166
R+ + P+ + S ++ R TG
Sbjct: 205 RDANIKSPALAFSLAATAQAPRIMTG 230
>UNIPROTKB|F1N7N1 [details] [associations]
symbol:QKI "Protein quaking" species:9913 "Bos taurus"
[GO:0042759 "long-chain fatty acid biosynthetic process"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 GeneTree:ENSGT00550000074434 IPI:IPI00690241
EMBL:DAAA02027443 EMBL:DAAA02027444 EMBL:DAAA02027445
EMBL:DAAA02027446 EMBL:DAAA02027447 Ensembl:ENSBTAT00000054202
OMA:CLTHLKF Uniprot:F1N7N1
Length = 315
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 59 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 118
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 119 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 178
Query: 142 RE 143
R+
Sbjct: 179 RD 180
>UNIPROTKB|Q5W9D7 [details] [associations]
symbol:QKI "Protein quaking" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
EMBL:AB177986 IPI:IPI00690241 RefSeq:NP_001007818.1
UniGene:Bt.91293 ProteinModelPortal:Q5W9D7 SMR:Q5W9D7 STRING:Q5W9D7
PRIDE:Q5W9D7 GeneID:493722 KEGG:bta:493722 CTD:9444
NextBio:20865466 Uniprot:Q5W9D7
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F1PLY2 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 EMBL:AAEX03000337
EMBL:AAEX03000338 Ensembl:ENSCAFT00000001203 Uniprot:F1PLY2
Length = 310
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 59 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 118
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 119 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 178
Query: 142 RE 143
R+
Sbjct: 179 RD 180
>UNIPROTKB|F1PX61 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 OMA:CLTHLKF
EMBL:AAEX03000337 EMBL:AAEX03000338 Ensembl:ENSCAFT00000035144
Uniprot:F1PX61
Length = 339
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 88 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 147
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 148 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 207
Query: 142 RE 143
R+
Sbjct: 208 RD 209
>UNIPROTKB|J9NVZ6 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 EMBL:AAEX03000337
EMBL:AAEX03000338 Ensembl:ENSCAFT00000045317 Uniprot:J9NVZ6
Length = 286
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 30 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 89
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 90 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 149
Query: 142 RE 143
R+
Sbjct: 150 RD 151
>UNIPROTKB|Q9GMY1 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
CTD:9444 EMBL:AB047312 RefSeq:NP_001003021.1 UniGene:Cfa.57
ProteinModelPortal:Q9GMY1 SMR:Q9GMY1 PRIDE:Q9GMY1 GeneID:606754
KEGG:cfa:606754 NextBio:20892526 Uniprot:Q9GMY1
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F5GXS8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
EMBL:AL356119 EMBL:AL031781 HGNC:HGNC:21100 ChiTaRS:QKI
IPI:IPI01009757 ProteinModelPortal:F5GXS8 SMR:F5GXS8
Ensembl:ENST00000537041 ArrayExpress:F5GXS8 Bgee:F5GXS8
Uniprot:F5GXS8
Length = 160
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 30 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 89
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 90 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 149
Query: 142 RE 143
R+
Sbjct: 150 RD 151
>UNIPROTKB|F5GYM3 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0007286
GO:GO:0003723 GO:GO:0042692 GO:GO:0042759 GO:GO:0042552
GO:GO:0010628 GO:GO:0001570 EMBL:AL356119 EMBL:AL031781
HGNC:HGNC:21100 ChiTaRS:QKI IPI:IPI01009310
ProteinModelPortal:F5GYM3 SMR:F5GYM3 Ensembl:ENST00000544823
ArrayExpress:F5GYM3 Bgee:F5GYM3 Uniprot:F5GYM3
Length = 170
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 30 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 89
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 90 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 149
Query: 142 RE 143
R+
Sbjct: 150 RD 151
>UNIPROTKB|Q96PU8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0042759 "long-chain fatty acid
biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0008380
GO:GO:0007286 GO:GO:0006397 GO:GO:0003723 GO:GO:0042692
GO:GO:0042759 GO:GO:0042552 GO:GO:0010628 GO:GO:0001570
GO:GO:0051028 eggNOG:COG5176 KO:K14945 HOVERGEN:HBG093883
OMA:GMAFPTK OrthoDB:EOG4RFKSZ CTD:9444 EMBL:AB067798 EMBL:AB067799
EMBL:AB067800 EMBL:AB067801 EMBL:AB067808 EMBL:AF142417
EMBL:AF142418 EMBL:AF142419 EMBL:AF142420 EMBL:AF142421
EMBL:AF142422 EMBL:AY780788 EMBL:DQ323998 EMBL:AL356119
EMBL:AL031781 EMBL:BC012222 EMBL:BC019917 EMBL:AK027309
IPI:IPI00385562 IPI:IPI00514277 IPI:IPI00736672 IPI:IPI00749287
IPI:IPI00759828 IPI:IPI00942653 RefSeq:NP_006766.1
RefSeq:NP_996735.1 RefSeq:NP_996736.1 RefSeq:NP_996737.1
UniGene:Hs.510324 ProteinModelPortal:Q96PU8 SMR:Q96PU8
IntAct:Q96PU8 MINT:MINT-1445480 STRING:Q96PU8 PhosphoSite:Q96PU8
DMDM:74761039 PaxDb:Q96PU8 PRIDE:Q96PU8 DNASU:9444
Ensembl:ENST00000275262 Ensembl:ENST00000361195
Ensembl:ENST00000361752 Ensembl:ENST00000361758
Ensembl:ENST00000392127 Ensembl:ENST00000424802
Ensembl:ENST00000453779 GeneID:9444 KEGG:hsa:9444 UCSC:uc003que.3
UCSC:uc003quf.3 UCSC:uc003qug.3 UCSC:uc003quh.3 UCSC:uc003qui.3
UCSC:uc003quj.3 GeneCards:GC06P163835 HGNC:HGNC:21100 HPA:CAB022602
HPA:HPA019123 MIM:609590 neXtProt:NX_Q96PU8 PharmGKB:PA134912180
InParanoid:Q96PU8 ChiTaRS:QKI GenomeRNAi:9444 NextBio:35368
ArrayExpress:Q96PU8 Bgee:Q96PU8 Genevestigator:Q96PU8
GermOnline:ENSG00000112531 Uniprot:Q96PU8
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F1SBW4 [details] [associations]
symbol:QKI "Protein quaking" species:9823 "Sus scrofa"
[GO:0042759 "long-chain fatty acid biosynthetic process"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 GeneTree:ENSGT00550000074434 OMA:CLTHLKF
EMBL:AEMK01188940 EMBL:CU062434 EMBL:CU074317
Ensembl:ENSSSCT00000004455 Uniprot:F1SBW4
Length = 311
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 60 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 119
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 120 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 179
Query: 142 RE 143
R+
Sbjct: 180 RD 181
>UNIPROTKB|Q5W9D5 [details] [associations]
symbol:QKI "Protein quaking" species:9823 "Sus scrofa"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
OrthoDB:EOG4RFKSZ CTD:9444 EMBL:AB177988 RefSeq:NP_001007196.1
UniGene:Ssc.7659 ProteinModelPortal:Q5W9D5 SMR:Q5W9D5 PRIDE:Q5W9D5
GeneID:492277 KEGG:ssc:492277 Uniprot:Q5W9D5
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>MGI|MGI:97837 [details] [associations]
symbol:Qk "quaking" species:10090 "Mus musculus" [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IGI] [GO:0008366 "axon ensheathment"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0042552 "myelination"
evidence=IMP] [GO:0042692 "muscle cell differentiation"
evidence=IMP] [GO:0042759 "long-chain fatty acid biosynthetic
process" evidence=IMP] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:97837 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0008380 GO:GO:0007286
GO:GO:0006397 GO:GO:0003723 GO:GO:0042692 GO:GO:0042759
GO:GO:0042552 GO:GO:0010628 GO:GO:0001570 GO:GO:0051028
eggNOG:COG5176 GeneTree:ENSGT00550000074434 KO:K14945
HOVERGEN:HBG093883 OMA:GMAFPTK OrthoDB:EOG4RFKSZ EMBL:U44940
EMBL:AF090402 EMBL:AF090403 EMBL:AF090404 EMBL:AF091047
EMBL:AF090401 EMBL:AF090392 EMBL:AF090393 EMBL:AF090394
EMBL:AF090395 EMBL:AF090396 EMBL:AF090397 EMBL:AF090400
EMBL:AF467890 EMBL:AK005169 EMBL:AK132303 EMBL:BC053426
EMBL:BC056346 EMBL:AJ012812 EMBL:AJ012813 EMBL:AJ012814
EMBL:AJ012816 EMBL:AJ012817 EMBL:AJ012815 EMBL:AJ012818
EMBL:AJ012820 EMBL:AJ012819 IPI:IPI00130483 IPI:IPI00136596
IPI:IPI00759871 IPI:IPI00759885 IPI:IPI00759892 IPI:IPI00759906
IPI:IPI00759949 IPI:IPI00760097 RefSeq:NP_001152988.1
RefSeq:NP_001152989.1 RefSeq:NP_068681.1 UniGene:Mm.130694
UniGene:Mm.384135 UniGene:Mm.393248 PDB:4DNN PDBsum:4DNN
ProteinModelPortal:Q9QYS9 SMR:Q9QYS9 STRING:Q9QYS9
PhosphoSite:Q9QYS9 PaxDb:Q9QYS9 PRIDE:Q9QYS9
Ensembl:ENSMUST00000042296 Ensembl:ENSMUST00000097414 GeneID:19317
KEGG:mmu:19317 UCSC:uc008akb.2 UCSC:uc008ake.2 UCSC:uc012ajv.1
CTD:19317 InParanoid:Q9QYS9 NextBio:296279 Bgee:Q9QYS9
CleanEx:MM_QK Genevestigator:Q9QYS9 GermOnline:ENSMUSG00000062078
Uniprot:Q9QYS9
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>RGD|1584886 [details] [associations]
symbol:Qk "quaking" species:10116 "Rattus norvegicus"
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISO] [GO:0008366 "axon
ensheathment" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0042552
"myelination" evidence=ISO] [GO:0042692 "muscle cell
differentiation" evidence=ISO] [GO:0042759 "long-chain fatty acid
biosynthetic process" evidence=ISO] [GO:0051028 "mRNA transport"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0008380 GO:GO:0007286
GO:GO:0006397 GO:GO:0003723 GO:GO:0042692 GO:GO:0042759
GO:GO:0042552 GO:GO:0010628 GO:GO:0001570 GO:GO:0051028
eggNOG:COG5176 HOGENOM:HOG000019831 HOVERGEN:HBG093883 OMA:GMAFPTK
OrthoDB:EOG4RFKSZ EMBL:AABR03000138 EMBL:AB054997 IPI:IPI00394474
UniGene:Rn.228876 ProteinModelPortal:Q91XU1 SMR:Q91XU1
STRING:Q91XU1 PhosphoSite:Q91XU1 RGD:628653 InParanoid:Q91XU1
ArrayExpress:Q91XU1 Genevestigator:Q91XU1
GermOnline:ENSRNOG00000017174 Uniprot:Q91XU1
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|D4A2X0 [details] [associations]
symbol:Qk "Protein Qk" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 RGD:1584886
GO:GO:0003723 IPI:IPI00213936 PRIDE:D4A2X0
Ensembl:ENSRNOT00000023290 ArrayExpress:D4A2X0 Uniprot:D4A2X0
Length = 338
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F1LMH5 [details] [associations]
symbol:Qk "Protein Qk" species:10116 "Rattus norvegicus"
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 RGD:1584886
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 IPI:IPI01016326 Ensembl:ENSRNOT00000035402
ArrayExpress:F1LMH5 Uniprot:F1LMH5
Length = 341
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F1NWU9 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 IPI:IPI00682938 EMBL:AADN02035543
EMBL:AADN02035544 Ensembl:ENSGALT00000018845 ArrayExpress:F1NWU9
Uniprot:F1NWU9
Length = 334
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|F1NWV0 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0005886
GO:GO:0005634 GO:GO:0003723 GO:GO:0042759 GO:GO:0010628
GeneTree:ENSGT00550000074434 OMA:GMAFPTK IPI:IPI00760364
EMBL:AADN02035543 EMBL:AADN02035544 Ensembl:ENSGALT00000018844
ArrayExpress:F1NWV0 Uniprot:F1NWV0
Length = 340
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>UNIPROTKB|Q9YH18 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
CTD:9444 EMBL:U86764 EMBL:U86765 EMBL:U86766 EMBL:U86767
IPI:IPI00582039 IPI:IPI00595503 IPI:IPI00682938 IPI:IPI00760364
RefSeq:NP_989641.2 UniGene:Gga.3168 ProteinModelPortal:Q9YH18
SMR:Q9YH18 STRING:Q9YH18 GeneID:374204 KEGG:gga:374204
InParanoid:Q9YH18 NextBio:20813708 Uniprot:Q9YH18
Length = 340
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 60/122 (49%), Positives = 92/122 (75%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTY 204
Query: 142 RE 143
R+
Sbjct: 205 RD 206
>ZFIN|ZDB-GENE-990415-230 [details] [associations]
symbol:qkia "QKI, KH domain containing, RNA binding
a" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008589 "regulation of smoothened signaling
pathway" evidence=IMP] [GO:0007519 "skeletal muscle tissue
development" evidence=IMP] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IGI] [GO:0017124 "SH3 domain binding"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
ZFIN:ZDB-GENE-990415-230 GO:GO:0003723 GeneTree:ENSGT00550000074434
GO:GO:0008589 GO:GO:0007519 GO:GO:0070935 EMBL:BX936408
EMBL:BX936463 IPI:IPI00993157 Ensembl:ENSDART00000125640
ArrayExpress:F1R190 Bgee:F1R190 Uniprot:F1R190
Length = 486
Score = 322 (118.4 bits), Expect = 8.2e-29, P = 8.2e-29
Identities = 56/122 (45%), Positives = 90/122 (73%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP++NFVGR+LGPRG + K++EA TGC++ +RG+ S++D KE++ RG+P +
Sbjct: 189 KLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNW 248
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHLN+ LH+LI + +I++R+A E +++LL P E +D +K+ QL ELA+LN +
Sbjct: 249 EHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTY 308
Query: 142 RE 143
R+
Sbjct: 309 RD 310
>WB|WBGene00001595 [details] [associations]
symbol:gld-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IDA] [GO:0017148 "negative regulation of
translation" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005829
GO:GO:0009792 GO:GO:0007126 GO:GO:0006898 GO:GO:0030154
GO:GO:0017148 GO:GO:0003727 GO:GO:0048477 GO:GO:0051729
GO:GO:0042127 GO:GO:0048027 GO:GO:0003730 GO:GO:0040027
GO:GO:0040020 eggNOG:COG5176 GeneTree:ENSGT00550000074434
EMBL:Z81130 EMBL:U20535 PIR:T25193 RefSeq:NP_492143.1 PDB:3K6T
PDB:3KBL PDBsum:3K6T PDBsum:3KBL ProteinModelPortal:Q17339
SMR:Q17339 DIP:DIP-24870N IntAct:Q17339 MINT:MINT-1054588
STRING:Q17339 PaxDb:Q17339 EnsemblMetazoa:T23G11.3.1
EnsemblMetazoa:T23G11.3.2 GeneID:172532 KEGG:cel:CELE_T23G11.3
UCSC:T23G11.3 CTD:172532 WormBase:T23G11.3 HOGENOM:HOG000015966
InParanoid:Q17339 OMA:TENRVHL BindingDB:Q17339 ChEMBL:CHEMBL1293302
EvolutionaryTrace:Q17339 NextBio:875927 GermOnline:T23G11.3
Uniprot:Q17339
Length = 463
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 58/129 (44%), Positives = 90/129 (69%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
++ +P + YP++NFVGR+LGPRG + K++E TGC++ +RGKGS++D KE RG+ +
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANW 267
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
EHL D LH+L++ + N V I+L+ A E +++LL P E D +KR+QL ELA++N +
Sbjct: 268 EHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTY 327
Query: 142 RE-DSPGPS 149
R SP P+
Sbjct: 328 RPMKSPNPA 336
>FB|FBgn0264491 [details] [associations]
symbol:how "held out wings" species:7227 "Drosophila
melanogaster" [GO:0007525 "somatic muscle development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0008016 "regulation of heart contraction" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0007521
"muscle cell fate determination" evidence=IDA] [GO:0007155 "cell
adhesion" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0007475 "apposition of dorsal and ventral
imaginal disc-derived wing surfaces" evidence=IMP] [GO:0003729
"mRNA binding" evidence=NAS;IDA] [GO:0007498 "mesoderm development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0008347 "glial cell migration" evidence=IMP] [GO:0008366 "axon
ensheathment" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0008078 "mesodermal cell migration" evidence=IMP] [GO:0045214
"sarcomere organization" evidence=IMP] [GO:0007284 "spermatogonial
cell division" evidence=IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AE014297
GO:GO:0005634 GO:GO:0007155 GO:GO:0008016 GO:GO:0007438
GO:GO:0016203 GO:GO:0003730 GO:GO:0045214 GO:GO:0030718
GO:GO:0008078 GO:GO:0008347 GO:GO:0007475 GO:GO:0007284
eggNOG:COG5176 GeneTree:ENSGT00550000074434 GO:GO:0007525
GO:GO:0000381 GO:GO:0008366 EMBL:U85651 EMBL:U72331 EMBL:AF003106
EMBL:AF003107 EMBL:U87150 EMBL:AY069862 RefSeq:NP_001027203.1
RefSeq:NP_001163683.1 RefSeq:NP_001163684.1 RefSeq:NP_524447.2
RefSeq:NP_732695.1 UniGene:Dm.20227 ProteinModelPortal:O01367
SMR:O01367 IntAct:O01367 MINT:MINT-307488 STRING:O01367
PaxDb:O01367 PRIDE:O01367 EnsemblMetazoa:FBtr0084177
EnsemblMetazoa:FBtr0301401 GeneID:42596 KEGG:dme:Dmel_CG10293
CTD:42596 FlyBase:FBgn0017397 InParanoid:O01367 KO:K14945
OMA:SLFQING OrthoDB:EOG4FJ6RD PhylomeDB:O01367 ChiTaRS:how
GenomeRNAi:42596 NextBio:829604 Bgee:O01367 GermOnline:CG10293
GO:GO:0007521 Uniprot:O01367
Length = 405
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 58/132 (43%), Positives = 90/132 (68%)
Query: 12 PSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDK 71
P V ++ +PV +P+FNFVGR+LGPRG + K++E TGC++ +RGKGS++D K
Sbjct: 130 PEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKK 189
Query: 72 EDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQL 131
ED RG+P +EHL+D LH+LI + N ++L QA +++LL P E +D +K++QL
Sbjct: 190 EDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQL 249
Query: 132 RELAMLNSNFRE 143
ELA++N +R+
Sbjct: 250 MELAIINGTYRD 261
>UNIPROTKB|G5EFF1 [details] [associations]
symbol:asd-2 "Protein ASD-2, isoform c" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0007411 GO:GO:0002119 GO:GO:0003727
GO:GO:0040017 GO:GO:0007413 GO:GO:0097157
GeneTree:ENSGT00550000074434 GO:GO:0000381 GO:GO:0043186
EMBL:FO080897 UniGene:Cel.16725 GeneID:188703 KEGG:cel:CELE_T21G5.5
CTD:188703 EMBL:EF630626 RefSeq:NP_001021627.1 SMR:G5EFF1
IntAct:G5EFF1 EnsemblMetazoa:T21G5.5c WormBase:T21G5.5c
NextBio:939786 Uniprot:G5EFF1
Length = 445
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 52/118 (44%), Positives = 85/118 (72%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHL 84
+P +P++NFVGR+LGPRG + K++E TGC++ +RG+GS++D KE+ RG+P +EHL
Sbjct: 136 VPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHL 195
Query: 85 NDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR 142
++ LH+LI+ + N ++L +A E + +LL P E +D +KR+QL ELA++N +R
Sbjct: 196 SEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAPEGEDDLKRKQLMELAIINGTYR 253
>WB|WBGene00006423 [details] [associations]
symbol:asd-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0007411
"axon guidance" evidence=IMP] [GO:0007413 "axonal fasciculation"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0097157 "pre-mRNA intronic binding"
evidence=IPI] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0007411
GO:GO:0002119 GO:GO:0003727 GO:GO:0040017 GO:GO:0007413
GO:GO:0097157 GeneTree:ENSGT00550000074434 GO:GO:0000381
GO:GO:0043186 EMBL:FO080897 EMBL:FO080896 RefSeq:NP_001250340.1
UniGene:Cel.16725 ProteinModelPortal:D4YW53 SMR:D4YW53
EnsemblMetazoa:T21G5.5d GeneID:188703 KEGG:cel:CELE_T21G5.5
CTD:188703 WormBase:T21G5.5d OMA:IQQYAAG ArrayExpress:D4YW53
Uniprot:D4YW53
Length = 486
Score = 304 (112.1 bits), Expect = 9.9e-27, P = 9.9e-27
Identities = 52/118 (44%), Positives = 85/118 (72%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHL 84
+P +P++NFVGR+LGPRG + K++E TGC++ +RG+GS++D KE+ RG+P +EHL
Sbjct: 166 VPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHL 225
Query: 85 NDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR 142
++ LH+LI+ + N ++L +A E + +LL P E +D +KR+QL ELA++N +R
Sbjct: 226 SEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAPEGEDDLKRKQLMELAIINGTYR 283
>UNIPROTKB|E1BVW8 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559 OMA:PPIARGV
EMBL:AADN02002672 EMBL:AADN02002673 EMBL:AADN02002674
EMBL:AADN02002675 EMBL:AADN02002676 EMBL:AADN02002677
EMBL:AADN02002678 EMBL:AADN02002679 EMBL:AADN02002680
IPI:IPI00593041 RefSeq:XP_426201.2 UniGene:Gga.14902
Ensembl:ENSGALT00000026242 GeneID:428643 KEGG:gga:428643
NextBio:20829580 Uniprot:E1BVW8
Length = 348
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/135 (48%), Positives = 88/135 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSNFREDS 145
LREL+ LN + EDS
Sbjct: 172 LRELSYLNGS--EDS 184
>UNIPROTKB|E1BP48 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0008266 "poly(U)
RNA binding" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559 OMA:PPIARGV
EMBL:DAAA02054729 EMBL:DAAA02054730 EMBL:DAAA02054731
EMBL:DAAA02054732 EMBL:DAAA02054733 EMBL:DAAA02054734
EMBL:DAAA02054735 EMBL:DAAA02054736 EMBL:DAAA02054737
EMBL:DAAA02054738 EMBL:DAAA02054739 EMBL:DAAA02054740
EMBL:DAAA02054741 EMBL:DAAA02054742 EMBL:DAAA02054743
EMBL:DAAA02054744 EMBL:DAAA02054745 EMBL:DAAA02054746
IPI:IPI00913818 RefSeq:XP_002697212.1 Ensembl:ENSBTAT00000061105
GeneID:789972 KEGG:bta:789972 NextBio:20929992 Uniprot:E1BP48
Length = 348
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/135 (48%), Positives = 88/135 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSNFREDS 145
LREL+ LN + EDS
Sbjct: 172 LRELSYLNGS--EDS 184
>UNIPROTKB|E2QWN2 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0008266 GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559
OMA:PPIARGV EMBL:AAEX03008417 EMBL:AAEX03008418 EMBL:AAEX03008419
RefSeq:XP_538980.2 ProteinModelPortal:E2QWN2
Ensembl:ENSCAFT00000003891 GeneID:481859 KEGG:cfa:481859
NextBio:20856585 Uniprot:E2QWN2
Length = 349
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/135 (48%), Positives = 88/135 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSNFREDS 145
LREL+ LN + EDS
Sbjct: 172 LRELSYLNGS--EDS 184
>UNIPROTKB|Q5VWX1 [details] [associations]
symbol:KHDRBS2 "KH domain-containing, RNA-binding, signal
transduction-associated protein 2" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0008266 GO:GO:0006355 GO:GO:0006351
eggNOG:COG5176 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
EMBL:AY077838 EMBL:AK292043 EMBL:AL360220 EMBL:AL049544
EMBL:AL138882 EMBL:AL355347 EMBL:AL391644 EMBL:Z93021 EMBL:CH471143
EMBL:BC034043 IPI:IPI00166708 RefSeq:NP_689901.2 UniGene:Hs.519794
HSSP:Q32NN2 ProteinModelPortal:Q5VWX1 SMR:Q5VWX1 IntAct:Q5VWX1
MINT:MINT-1449914 STRING:Q5VWX1 PhosphoSite:Q5VWX1 DMDM:74762274
PaxDb:Q5VWX1 PRIDE:Q5VWX1 DNASU:202559 Ensembl:ENST00000281156
GeneID:202559 KEGG:hsa:202559 UCSC:uc003peg.2 GeneCards:GC06M062447
H-InvDB:HIX0005989 HGNC:HGNC:18114 HPA:HPA029392 MIM:610487
neXtProt:NX_Q5VWX1 PharmGKB:PA30093 InParanoid:Q5VWX1
PhylomeDB:Q5VWX1 GenomeRNAi:202559 NextBio:90301
ArrayExpress:Q5VWX1 Bgee:Q5VWX1 CleanEx:HS_KHDRBS2
Genevestigator:Q5VWX1 Uniprot:Q5VWX1
Length = 349
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/135 (48%), Positives = 88/135 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSNFREDS 145
LREL+ LN + EDS
Sbjct: 172 LRELSYLNGS--EDS 184
>UNIPROTKB|F1RZV6 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0008266 "poly(U)
RNA binding" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 OMA:PPIARGV
EMBL:CT797468 EMBL:CT961061 EMBL:CU407231 EMBL:CU570917
EMBL:FP565898 Ensembl:ENSSSCT00000001662 Uniprot:F1RZV6
Length = 277
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/135 (48%), Positives = 88/135 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSNFREDS 145
LREL+ LN + EDS
Sbjct: 172 LRELSYLNGS--EDS 184
>MGI|MGI:2159649 [details] [associations]
symbol:Khdrbs2 "KH domain containing, RNA binding, signal
transduction associated 2" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0017124 "SH3 domain
binding" evidence=IDA] [GO:0042169 "SH2 domain binding"
evidence=IDA] [GO:0046982 "protein heterodimerization activity"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:2159649 GO:GO:0005634
GO:GO:0008266 GO:GO:0006355 GO:GO:0005070 GO:GO:0017124
GO:GO:0006351 GO:GO:0042169 GO:GO:0046982 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
HSSP:Q32NN2 EMBL:AF098796 EMBL:BC066814 EMBL:BC132117 EMBL:BC132119
IPI:IPI00322691 IPI:IPI00874354 RefSeq:NP_573498.1
UniGene:Mm.336594 ProteinModelPortal:Q9WU01 SMR:Q9WU01
STRING:Q9WU01 PhosphoSite:Q9WU01 PaxDb:Q9WU01 PRIDE:Q9WU01
Ensembl:ENSMUST00000027226 GeneID:170771 KEGG:mmu:170771
UCSC:uc007ano.1 UCSC:uc007anp.1 InParanoid:Q9WU01 ChiTaRS:KHDRBS2
NextBio:370395 Bgee:Q9WU01 Genevestigator:Q9WU01 Uniprot:Q9WU01
Length = 349
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 62/130 (47%), Positives = 85/130 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSN 140
LREL+ LN +
Sbjct: 172 LRELSYLNGS 181
>RGD|621738 [details] [associations]
symbol:Khdrbs2 "KH domain containing, RNA binding, signal
transduction associated 2" species:10116 "Rattus norvegicus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0017124 "SH3 domain binding"
evidence=IEA;ISO] [GO:0042169 "SH2 domain binding"
evidence=IEA;ISO] [GO:0046982 "protein heterodimerization activity"
evidence=IEA;ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:621738 GO:GO:0005634
GO:GO:0008266 GO:GO:0006355 GO:GO:0006351 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
HSSP:Q32NN2 EMBL:AF305618 IPI:IPI00200486 RefSeq:NP_579852.1
UniGene:Rn.154423 ProteinModelPortal:Q920F3 STRING:Q920F3
PhosphoSite:Q920F3 PRIDE:Q920F3 Ensembl:ENSRNOT00000016578
GeneID:170843 KEGG:rno:170843 UCSC:RGD:621738 InParanoid:Q920F3
NextBio:621265 ArrayExpress:Q920F3 Genevestigator:Q920F3
Uniprot:Q920F3
Length = 349
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 62/130 (47%), Positives = 85/130 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSN 140
LREL+ LN +
Sbjct: 172 LRELSYLNGS 181
>UNIPROTKB|F1P522 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:AADN02035543 EMBL:AADN02035544
IPI:IPI01017166 Ensembl:ENSGALT00000031822 ArrayExpress:F1P522
Uniprot:F1P522
Length = 186
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 49/97 (50%), Positives = 75/97 (77%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 144
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKP 118
EHLN+ LH+LI + N +I+L++A E +++LL P
Sbjct: 145 EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIP 181
>ZFIN|ZDB-GENE-061013-497 [details] [associations]
symbol:khdrbs2 "KH domain containing, RNA binding,
signal transduction associated 2" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-061013-497
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0003723
eggNOG:COG5176 GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 EMBL:BC124701 IPI:IPI00802483
RefSeq:NP_001070758.1 UniGene:Dr.92774 ProteinModelPortal:Q08BJ2
PRIDE:Q08BJ2 Ensembl:ENSDART00000101134 GeneID:768147
KEGG:dre:768147 CTD:202559 InParanoid:Q08BJ2 OMA:PPIARGV
OrthoDB:EOG418BP2 NextBio:20918466 Bgee:Q08BJ2 Uniprot:Q08BJ2
Length = 346
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/130 (46%), Positives = 85/130 (65%)
Query: 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE 72
S+ +K R+ IPV YP FNFVG+LLGPRGNS+KR++ TG ++ I GKGS++D KE
Sbjct: 54 SNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKE 113
Query: 73 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
++LR G Y HL++ LH+LIE P R+ A E I++ L P + D I+++Q
Sbjct: 114 EELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQ 171
Query: 131 LRELAMLNSN 140
LREL+ LN +
Sbjct: 172 LRELSYLNGS 181
>ZFIN|ZDB-GENE-040426-2344 [details] [associations]
symbol:khdrbs1b "KH domain containing, RNA
binding, signal transduction associated 1b" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2344 GO:GO:0003723 EMBL:BX547939 HSSP:Q9BW01
eggNOG:COG5176 GeneTree:ENSGT00550000074434 InterPro:IPR012956
Pfam:PF08143 HOGENOM:HOG000230771 HOVERGEN:HBG079164 KO:K13198
OMA:FMELSYL OrthoDB:EOG4JHCGB EMBL:BC067711 EMBL:BC155179
IPI:IPI00494960 RefSeq:NP_998400.1 UniGene:Dr.162044
Ensembl:ENSDART00000103471 GeneID:406516 KEGG:dre:406516 CTD:406516
InParanoid:Q6NW62 NextBio:20818091 Uniprot:Q6NW62
Length = 352
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 56/141 (39%), Positives = 84/141 (59%)
Query: 15 YTVKRIL---RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDK 71
+T+K I R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D +K
Sbjct: 52 FTMKNIKLKERILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKNK 111
Query: 72 EDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQ 129
E++LR G P Y HL+ LH+ IE P +R+ A E I++ L P + D I ++
Sbjct: 112 EEELRKNGEPKYAHLSMELHVFIEVFAPVPDAYMRMAHAMEEIKKFLFP--DMMDDICQE 169
Query: 130 QLRELAMLNSNFREDSPGPSG 150
Q E+ LN G G
Sbjct: 170 QFMEMKFLNGGQEHGGRGRGG 190
>CGD|CAL0004717 [details] [associations]
symbol:orf19.329 species:5476 "Candida albicans" [GO:0000243
"commitment complex" evidence=IEA] [GO:0045131 "pre-mRNA branch
point binding" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 CGD:CAL0004717
GO:GO:0008380 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720024.1 RefSeq:XP_720156.1 HSSP:Q9BW01
ProteinModelPortal:Q5AED9 STRING:Q5AED9 GeneID:3638211
GeneID:3638361 KEGG:cal:CaO19.329 KEGG:cal:CaO19.7961
eggNOG:COG5176 KO:K13095 Uniprot:Q5AED9
Length = 455
Score = 262 (97.3 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 57/138 (41%), Positives = 84/138 (60%)
Query: 12 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 69
PS+Y + + RL +PV YP+ NFVG L+GPRGN+LK+++ +G R+ IRGKGS+K+
Sbjct: 139 PSNYRRPSRTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEG 198
Query: 70 DKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELL-KPVDESQDYIKR 128
D + D LH+LI AD P I ++ EII++L+ P + +++KR
Sbjct: 199 KSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFSP--QGMNFMKR 255
Query: 129 QQLRELAMLNSNFREDSP 146
QL+ELA+LN RE P
Sbjct: 256 DQLKELAVLNGTLRETKP 273
>UNIPROTKB|F1NKE9 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004087 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 GeneTree:ENSGT00550000074434
OMA:ETYGEYE EMBL:AADN02037546 EMBL:AADN02037547 IPI:IPI00813297
Ensembl:ENSGALT00000026120 Uniprot:F1NKE9
Length = 327
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 44 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKTKEEELRKSGEAKYF 103
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 104 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 157
>MGI|MGI:1313312 [details] [associations]
symbol:Khdrbs3 "KH domain containing, RNA binding, signal
transduction associated 3" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003727 "single-stranded RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=ISO]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 MGI:MGI:1313312
GO:GO:0005634 GO:GO:0006355 GO:GO:0003727 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OMA:ETYGEYE
OrthoDB:EOG4DBTFN EMBL:AF079763 EMBL:AF099092 EMBL:BC031507
EMBL:BC057577 IPI:IPI00314520 RefSeq:NP_034288.2 UniGene:Mm.17964
ProteinModelPortal:Q9R226 SMR:Q9R226 IntAct:Q9R226 STRING:Q9R226
PhosphoSite:Q9R226 PaxDb:Q9R226 PRIDE:Q9R226
Ensembl:ENSMUST00000022954 GeneID:13992 KEGG:mmu:13992
UCSC:uc007wbf.1 InParanoid:Q9R226 NextBio:284872 Bgee:Q9R226
Genevestigator:Q9R226 GermOnline:ENSMUSG00000022332 Uniprot:Q9R226
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 62/139 (44%), Positives = 82/139 (58%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR 142
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSE 179
Query: 143 E-DSPGPSGSVSPFNSSGM 160
D P G S + G+
Sbjct: 180 NADVPVVRGK-STLRTRGV 197
>RGD|620921 [details] [associations]
symbol:Khdrbs3 "KH domain containing, RNA binding, signal
transduction associated 3" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IMP] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 RGD:620921 GO:GO:0005634 GO:GO:0006355 GO:GO:0003727
GO:GO:0006397 GO:GO:0006351 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OrthoDB:EOG4DBTFN
EMBL:AF152547 IPI:IPI00203901 RefSeq:NP_071585.1 UniGene:Rn.229046
ProteinModelPortal:Q9JLP1 STRING:Q9JLP1 PhosphoSite:Q9JLP1
PRIDE:Q9JLP1 GeneID:64015 KEGG:rno:64015 UCSC:RGD:620921
eggNOG:NOG249423 InParanoid:Q9JLP1 NextBio:612594
ArrayExpress:Q9JLP1 Genevestigator:Q9JLP1
GermOnline:ENSRNOG00000009539 Uniprot:Q9JLP1
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 62/139 (44%), Positives = 82/139 (58%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR 142
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNGGSE 179
Query: 143 E-DSPGPSGSVSPFNSSGM 160
D P G S + G+
Sbjct: 180 NADVPVVRGK-STLRTRGV 197
>UNIPROTKB|A4FV24 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OMA:ETYGEYE
OrthoDB:EOG4DBTFN EMBL:DAAA02037568 EMBL:DAAA02037569 EMBL:BC123651
IPI:IPI00717873 RefSeq:NP_001076981.1 UniGene:Bt.50935
STRING:A4FV24 Ensembl:ENSBTAT00000002827 GeneID:615095
KEGG:bta:615095 InParanoid:A4FV24 NextBio:20899441 Uniprot:A4FV24
Length = 346
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175
>UNIPROTKB|E2RLG8 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074434 CTD:10656 KO:K14942 OMA:ETYGEYE
EMBL:AAEX03008846 RefSeq:XP_848348.1 Ensembl:ENSCAFT00000001808
GeneID:475106 KEGG:cfa:475106 Uniprot:E2RLG8
Length = 346
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175
>UNIPROTKB|E5RG12 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:18117 EMBL:AC040914
EMBL:AC104371 IPI:IPI00980277 ProteinModelPortal:E5RG12 SMR:E5RG12
Ensembl:ENST00000517394 ArrayExpress:E5RG12 Bgee:E5RG12
Uniprot:E5RG12
Length = 161
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 35 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 94
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 95 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 148
>UNIPROTKB|E5RJZ9 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
HGNC:HGNC:18117 EMBL:AC040914 EMBL:AC104371 IPI:IPI01010991
ProteinModelPortal:E5RJZ9 SMR:E5RJZ9 Ensembl:ENST00000524199
ArrayExpress:E5RJZ9 Bgee:E5RJZ9 Uniprot:E5RJZ9
Length = 265
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 34 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 93
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 94 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 147
>UNIPROTKB|O75525 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0006355 GO:GO:0003727
GO:GO:0006397 GO:GO:0007283 GO:GO:0006351 GO:GO:0003723
eggNOG:COG5176 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 HPA:HPA029392 EMBL:AF051321 EMBL:AF051322
EMBL:AF069681 EMBL:BC032606 EMBL:BC068536 IPI:IPI00008570
IPI:IPI00744983 RefSeq:NP_006549.1 UniGene:Hs.444558
ProteinModelPortal:O75525 SMR:O75525 IntAct:O75525
MINT:MINT-1411200 STRING:O75525 PhosphoSite:O75525 PaxDb:O75525
PRIDE:O75525 DNASU:10656 Ensembl:ENST00000355849 GeneID:10656
KEGG:hsa:10656 UCSC:uc003yuv.3 UCSC:uc003yuw.3 CTD:10656
GeneCards:GC08P136538 HGNC:HGNC:18117 HPA:HPA000275 HPA:HPA000500
MIM:610421 neXtProt:NX_O75525 PharmGKB:PA30094 InParanoid:O75525
KO:K14942 OMA:ETYGEYE OrthoDB:EOG4DBTFN PhylomeDB:O75525
GenomeRNAi:10656 NextBio:40513 ArrayExpress:O75525 Bgee:O75525
CleanEx:HS_KHDRBS3 Genevestigator:O75525 GermOnline:ENSG00000131773
Uniprot:O75525
Length = 346
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175
>UNIPROTKB|F1RRV9 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0003723 OMA:ETYGEYE EMBL:CU151851
Ensembl:ENSSSCT00000006524 Uniprot:F1RRV9
Length = 300
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 16 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 75
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 76 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 129
>UNIPROTKB|I3LAN7 [details] [associations]
symbol:LOC100625959 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 Ensembl:ENSSSCT00000023135 OMA:PEMNDEI
Uniprot:I3LAN7
Length = 151
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y
Sbjct: 9 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 68
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 69 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 122
>UNIPROTKB|F5H8C8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0007286
GO:GO:0003723 GO:GO:0042692 GO:GO:0042759 GO:GO:0042552
GO:GO:0010628 GO:GO:0001570 EMBL:AL356119 EMBL:AL031781
HGNC:HGNC:21100 ChiTaRS:QKI IPI:IPI01010211
ProteinModelPortal:F5H8C8 SMR:F5H8C8 Ensembl:ENST00000544436
ArrayExpress:F5H8C8 Bgee:F5H8C8 Uniprot:F5H8C8
Length = 100
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 41/71 (57%), Positives = 59/71 (83%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY 81
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D KE++ RG+P +
Sbjct: 30 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW 89
Query: 82 EHLNDPLHILI 92
EHLN+ LH+LI
Sbjct: 90 EHLNEDLHVLI 100
>UNIPROTKB|E1C4N4 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2
adaptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046831 "regulation of RNA export from nucleus" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 GeneTree:ENSGT00550000074434
GO:GO:0046831 EMBL:AADN02043780 EMBL:AADN02043781 EMBL:AADN02043782
IPI:IPI00822118 Ensembl:ENSGALT00000040759 Uniprot:E1C4N4
Length = 355
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 55/133 (41%), Positives = 80/133 (60%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 64 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 123
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 124 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 181
Query: 140 NFREDSPGPSGSV 152
E + G G V
Sbjct: 182 -VPEPTRGRGGPV 193
>DICTYBASE|DDB_G0293554 [details] [associations]
symbol:sf1 "CCHC-type zinc finger-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0000243 "commitment
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322
SMART:SM00343 dictyBase:DDB_G0293554 GenomeReviews:CM000155_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0000398
EMBL:AAFI02000218 HSSP:Q9BW01 eggNOG:COG5176 KO:K13095
RefSeq:XP_629004.1 ProteinModelPortal:Q54BM5
EnsemblProtists:DDB0233391 GeneID:8629288 KEGG:ddi:DDB_G0293554
InParanoid:Q54BM5 OMA:ENDELHV GO:GO:0000243 Uniprot:Q54BM5
Length = 501
Score = 249 (92.7 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 60/145 (41%), Positives = 90/145 (62%)
Query: 12 PSSY---TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD 68
PS Y K+ ++ IP+ +P +NF+G ++GPRGN+ KR+E +G ++ IRGKGS +D
Sbjct: 169 PSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD 228
Query: 69 PDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKR 128
K KL+ ++ ND LH+L+ AD VD +L +A+ ++ E L PV+E ++ KR
Sbjct: 229 -GKPTKLQ----FQE-NDELHVLLTADT----VD-QLDKAEVLVREFLIPVEEGKNEHKR 277
Query: 129 QQLRELAMLNSNFREDSPGPSGSVS 153
QQLRELA +N RE P G+ S
Sbjct: 278 QQLRELAEMNGTLRE-RPAYMGNRS 301
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 251 (93.4 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 56/136 (41%), Positives = 85/136 (62%)
Query: 12 PSSYTVKRI-LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPD 70
P+ Y ++ +L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 233 PADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 292
Query: 71 KEDK--LRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKR 128
+ K L+ P N+ LH+L+EA+ L A ++E+LL+PVDE + KR
Sbjct: 293 HQQKKDLKYDPSE---NEDLHVLVEAETQE-----ALEAAAGMVEKLLQPVDEVLNEHKR 344
Query: 129 QQLRELAMLNSNFRED 144
QQLRELA LN R++
Sbjct: 345 QQLRELATLNGTIRDE 360
>UNIPROTKB|F1NLF2 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2
adaptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046831 "regulation of RNA export from nucleus" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 GeneTree:ENSGT00550000074434
IPI:IPI00603250 GO:GO:0046831 OMA:FMELSYL EMBL:AADN02043780
EMBL:AADN02043781 EMBL:AADN02043782 Ensembl:ENSGALT00000005175
Uniprot:F1NLF2
Length = 433
Score = 243 (90.6 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 55/133 (41%), Positives = 80/133 (60%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 201
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 202 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 259
Query: 140 NFREDSPGPSGSV 152
E + G G V
Sbjct: 260 -VPEPTRGRGGPV 271
>UNIPROTKB|Q8UUW7 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0000086 "G2/M
transition of mitotic cell cycle" evidence=IDA] [GO:0007166 "cell
surface receptor signaling pathway" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0045948
"positive regulation of translational initiation" evidence=ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0046831 "regulation of RNA export from nucleus"
evidence=ISS] [GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0000086
GO:GO:0016020 GO:GO:0005070 GO:GO:0006351 GO:GO:0003723
GO:GO:0007166 eggNOG:COG5176 EMBL:AY057837 IPI:IPI00603250
RefSeq:NP_989561.1 UniGene:Gga.3874 ProteinModelPortal:Q8UUW7
SMR:Q8UUW7 STRING:Q8UUW7 PRIDE:Q8UUW7 GeneID:374071 KEGG:gga:374071
CTD:10657 HOGENOM:HOG000230771 HOVERGEN:HBG079164 InParanoid:Q8UUW7
KO:K13198 NextBio:20813592 GO:GO:0046831 Uniprot:Q8UUW7
Length = 433
Score = 243 (90.6 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 55/133 (41%), Positives = 80/133 (60%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 201
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 202 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 259
Query: 140 NFREDSPGPSGSV 152
E + G G V
Sbjct: 260 -VPEPTRGRGGPV 271
>WB|WBGene00019509 [details] [associations]
symbol:K07H8.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0040007 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723 HSSP:Q9BW01
eggNOG:COG5176 GeneTree:ENSGT00550000074434 EMBL:FO081300
PIR:T33021 RefSeq:NP_501390.1 ProteinModelPortal:O45180 SMR:O45180
STRING:O45180 EnsemblMetazoa:K07H8.9 GeneID:177620
KEGG:cel:CELE_K07H8.9 UCSC:K07H8.9 CTD:177620 WormBase:K07H8.9
HOGENOM:HOG000016492 InParanoid:O45180 OMA:ISMADIG NextBio:897640
Uniprot:O45180
Length = 254
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/121 (38%), Positives = 73/121 (60%)
Query: 23 LEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKE-DKLRGRPGY 81
+ IPV+TYP +NF+GR++GPRG + K++E TGCR+ IRG S K K G
Sbjct: 125 IRIPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHSNKMYGNALHKTHGDGSQ 184
Query: 82 EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
+ ++ PL +++E P R+ A E ++ LL P + +D +KR+QL ELA++N +
Sbjct: 185 DAIDLPLRVIVETSGPRREATARITAALETVQVLLVPPPDGRDELKRRQLVELAIMNGTY 244
Query: 142 R 142
R
Sbjct: 245 R 245
>MGI|MGI:893579 [details] [associations]
symbol:Khdrbs1 "KH domain containing, RNA binding, signal
transduction associated 1" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=ISO;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007166 "cell surface receptor signaling
pathway" evidence=ISO;IDA] [GO:0016020 "membrane" evidence=ISO]
[GO:0017124 "SH3 domain binding" evidence=ISO] [GO:0032403 "protein
complex binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO] [GO:0046831
"regulation of RNA export from nucleus" evidence=IDA] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISO]
[GO:0070618 "Grb2-Sos complex" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:893579 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0006351 GO:GO:0003723 GO:GO:0007049 GO:GO:0007166
eggNOG:COG5176 GeneTree:ENSGT00550000074434 CTD:10657
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OMA:FMELSYL
OrthoDB:EOG4JHCGB ChiTaRS:KHDRBS1 EMBL:U17961 EMBL:U17046
EMBL:AK050520 EMBL:AK152084 EMBL:AL669834 EMBL:CU210913
EMBL:BC002051 IPI:IPI00458765 PIR:I49140 PIR:S43974
RefSeq:NP_035447.3 UniGene:Mm.489797 UniGene:Mm.8256
ProteinModelPortal:Q60749 SMR:Q60749 DIP:DIP-2861N IntAct:Q60749
STRING:Q60749 PhosphoSite:Q60749 PaxDb:Q60749 PRIDE:Q60749
Ensembl:ENSMUST00000066257 Ensembl:ENSMUST00000129342 GeneID:20218
KEGG:mmu:20218 UCSC:uc008uyd.1 InParanoid:B2KG38 NextBio:297827
Bgee:Q60749 Genevestigator:Q60749 GermOnline:ENSMUSG00000028790
Uniprot:Q60749
Length = 443
Score = 242 (90.2 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 56/133 (42%), Positives = 80/133 (60%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
Query: 140 NFREDSPGPSGSV 152
E S G SV
Sbjct: 277 -VPEPSRGRGVSV 288
>RGD|621459 [details] [associations]
symbol:Khdrbs1 "KH domain containing, RNA binding, signal
transduction associated 1" species:10116 "Rattus norvegicus"
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISO;ISS;TAS] [GO:0005070
"SH3/SH2 adaptor activity" evidence=ISO;IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007166 "cell surface receptor
signaling pathway" evidence=ISO;IDA] [GO:0009966 "regulation of
signal transduction" evidence=NAS] [GO:0016020 "membrane"
evidence=ISO;ISS] [GO:0017124 "SH3 domain binding" evidence=IDA]
[GO:0032403 "protein complex binding" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045948 "positive regulation of translational
initiation" evidence=ISO;ISS] [GO:0046831 "regulation of RNA export
from nucleus" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISO;ISS] [GO:0070618 "Grb2-Sos
complex" evidence=IDA] [GO:0031647 "regulation of protein
stability" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:621459 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0000086 GO:GO:0009966
GO:GO:0032403 GO:GO:0017124 GO:GO:0006351 GO:GO:0003723
GO:GO:0007166 eggNOG:COG5176 CTD:10657 HOGENOM:HOG000230771
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OrthoDB:EOG4JHCGB
EMBL:AF305619 EMBL:AF393783 EMBL:BC061987 IPI:IPI00205097
RefSeq:NP_569089.1 UniGene:Rn.92906 ProteinModelPortal:Q91V33
SMR:Q91V33 IntAct:Q91V33 STRING:Q91V33 PhosphoSite:Q91V33
PRIDE:Q91V33 GeneID:117268 KEGG:rno:117268 NextBio:620165
ArrayExpress:Q91V33 Genevestigator:Q91V33 GO:GO:0070618
Uniprot:Q91V33
Length = 443
Score = 242 (90.2 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 56/133 (42%), Positives = 80/133 (60%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
Query: 140 NFREDSPGPSGSV 152
E S G SV
Sbjct: 277 -VPEPSRGRGVSV 288
>UNIPROTKB|J9NRH2 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074434
EMBL:AAEX03001657 EMBL:AAEX03001658 Ensembl:ENSCAFT00000043112
Uniprot:J9NRH2
Length = 423
Score = 239 (89.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 139 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 198
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 199 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 255
>SGD|S000004106 [details] [associations]
symbol:MSL5 "Component of the commitment complex"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IDA] [GO:0045131 "pre-mRNA branch point binding"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 InterPro:IPR013041 SGD:S000004106
GO:GO:0046872 GO:GO:0008270 EMBL:BK006945 EMBL:X89514
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 SUPFAM:SSF49348
EMBL:U53877 GO:GO:0000398 KO:K13095 GO:GO:0000243
HOGENOM:HOG000197271 OrthoDB:EOG4HQHTF EMBL:Z73288 PIR:S64953
RefSeq:NP_013217.1 PDB:3FMA PDBsum:3FMA ProteinModelPortal:Q12186
SMR:Q12186 DIP:DIP-991N IntAct:Q12186 MINT:MINT-489287
STRING:Q12186 PaxDb:Q12186 EnsemblFungi:YLR116W GeneID:850807
KEGG:sce:YLR116W CYGD:YLR116w GeneTree:ENSGT00550000074434
OMA:PPASHIS EvolutionaryTrace:Q12186 NextBio:967037
Genevestigator:Q12186 GermOnline:YLR116W GO:GO:0045131
Uniprot:Q12186
Length = 476
Score = 240 (89.5 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 57/126 (45%), Positives = 77/126 (61%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHL 84
IPVD YP+ NFVG LLGPRG +L++++ + C++ IRG+GS+K+ L PG +
Sbjct: 154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLP--PGAMNF 211
Query: 85 NDPLHILIEADLPANIVDIRLRQAQEI-IEELLKPVDESQDYIKRQQLRELAMLNSNFRE 143
DPLH LI AD I ++ Q I I+ + P E Q+ +KR QLRELA LN RE
Sbjct: 212 EDPLHCLIIADSEDKIQK-GIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLRE 268
Query: 144 DS-PGP 148
D+ P P
Sbjct: 269 DNRPCP 274
>UNIPROTKB|Q29RQ2 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046831 "regulation of RNA export from nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 eggNOG:COG5176
GeneTree:ENSGT00550000074434 CTD:10657 HOGENOM:HOG000230771
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OMA:FMELSYL
OrthoDB:EOG4JHCGB EMBL:DAAA02006245 EMBL:BC114075 IPI:IPI00691512
RefSeq:NP_001039907.1 UniGene:Bt.23430 SMR:Q29RQ2 STRING:Q29RQ2
Ensembl:ENSBTAT00000016581 GeneID:538775 KEGG:bta:538775
InParanoid:Q29RQ2 NextBio:20877572 Uniprot:Q29RQ2
Length = 443
Score = 239 (89.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
>UNIPROTKB|Q07666 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0017124 "SH3 domain
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0070618 "Grb2-Sos complex" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS]
[GO:0046831 "regulation of RNA export from nucleus" evidence=ISS]
[GO:0016020 "membrane" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0007166 "cell surface receptor signaling pathway"
evidence=IDA] [GO:0005070 "SH3/SH2 adaptor activity" evidence=IPI]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=IDA] [GO:0045948 "positive
regulation of translational initiation" evidence=IDA] [GO:0031647
"regulation of protein stability" evidence=IDA] [GO:0007050 "cell
cycle arrest" evidence=TAS] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0008283 "cell proliferation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0045892
GO:GO:0000086 GO:GO:0016020 GO:GO:0003677 EMBL:CH471059
GO:GO:0008283 GO:GO:0006397 GO:GO:0007050 GO:GO:0006351
GO:GO:0003723 GO:GO:0007166 PDB:3QHE PDBsum:3QHE eggNOG:COG5176
EMBL:AL445248 CTD:10657 HOGENOM:HOG000230771 HOVERGEN:HBG079164
KO:K13198 GO:GO:0046831 EMBL:M88108 EMBL:U78971 EMBL:AK091346
EMBL:AL139249 EMBL:BC000717 EMBL:BC010132 EMBL:BC019109
IPI:IPI00008575 IPI:IPI00082310 IPI:IPI00385834 PIR:A38219
RefSeq:NP_001258807.1 RefSeq:NP_006550.1 UniGene:Hs.445893 PDB:2XA6
PDBsum:2XA6 ProteinModelPortal:Q07666 SMR:Q07666 DIP:DIP-29007N
IntAct:Q07666 MINT:MINT-102826 STRING:Q07666 PhosphoSite:Q07666
DMDM:62511098 PaxDb:Q07666 PRIDE:Q07666 DNASU:10657
Ensembl:ENST00000327300 Ensembl:ENST00000492989 GeneID:10657
KEGG:hsa:10657 UCSC:uc001bua.1 UCSC:uc001bub.3
GeneCards:GC01P032479 HGNC:HGNC:18116 HPA:CAB005355 MIM:602489
neXtProt:NX_Q07666 PharmGKB:PA30092 InParanoid:Q07666 OMA:FMELSYL
OrthoDB:EOG4JHCGB PhylomeDB:Q07666 BindingDB:Q07666
ChEMBL:CHEMBL1795190 ChiTaRS:KHDRBS1 EvolutionaryTrace:Q07666
GenomeRNAi:10657 NextBio:40517 PMAP-CutDB:Q07666
ArrayExpress:Q07666 Bgee:Q07666 CleanEx:HS_KHDRBS1
Genevestigator:Q07666 GermOnline:ENSG00000121774 Uniprot:Q07666
Length = 443
Score = 239 (89.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
>UNIPROTKB|I3LP11 [details] [associations]
symbol:LOC100739434 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0046831 "regulation of RNA export from nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074434
EMBL:FP325355 EMBL:FP340586 Ensembl:ENSSSCT00000031351 OMA:REEPESY
Uniprot:I3LP11
Length = 443
Score = 239 (89.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
>UNIPROTKB|F1PLD5 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0046831 "regulation of RNA export from
nucleus" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007166 "cell surface receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005070
"SH3/SH2 adaptor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0045892
GO:GO:0016020 GO:GO:0003723 GO:GO:0007166
GeneTree:ENSGT00550000074434 GO:GO:0046831 OMA:FMELSYL
EMBL:AAEX03001657 EMBL:AAEX03001658 Ensembl:ENSCAFT00000017162
Uniprot:F1PLD5
Length = 444
Score = 239 (89.2 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRP 79
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D KE++LR G P
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+ LN
Sbjct: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
>WB|WBGene00022101 [details] [associations]
symbol:Y69A2AR.32 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:FO081818 RefSeq:NP_741340.2
ProteinModelPortal:H2L0S1 PRIDE:H2L0S1 EnsemblMetazoa:Y69A2AR.32a
GeneID:177042 KEGG:cel:CELE_Y69A2AR.32 CTD:177042
WormBase:Y69A2AR.32a OMA:PLHVYIE Uniprot:H2L0S1
Length = 384
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 47/135 (34%), Positives = 79/135 (58%)
Query: 23 LEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI------KDPDKEDKLR 76
L +PV+ YP +NFVGR+LGPRG ++K++E TGCR+++RG+ S P+K
Sbjct: 75 LMVPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKSTPSF 134
Query: 77 GRPGYEHLN------DPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130
+P ++ +PLH+ IE + ++ A E+I+ LL P + +D +KRQQ
Sbjct: 135 SKPSLSIISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLSPPKDGKDELKRQQ 194
Query: 131 LRELAMLNSNFREDS 145
L +++++N +R S
Sbjct: 195 LVDISLINGTYRVTS 209
>ASPGD|ASPL0000074583 [details] [associations]
symbol:AN10615 species:162425 "Emericella nidulans"
[GO:0000349 "generation of catalytic spliceosome for first
transesterification step" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 EMBL:BN001303 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000197271 EnsemblFungi:CADANIAT00005496
OMA:PPLMPWM Uniprot:C8V9G4
Length = 554
Score = 225 (84.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 53/138 (38%), Positives = 78/138 (56%)
Query: 12 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 69
PS Y K ++ +PV+ YP NF+G L+GPRGN+LK++E +G ++ IRGKGS+K+
Sbjct: 167 PSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEG 226
Query: 70 DKEDKLRGRPGYEHLN---DPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 126
+GR H + + LH LI AD + + + +IE + E Q+ +
Sbjct: 227 ------KGRSDAAHASNQEEDLHCLIMADTEEKVNKAK-KLVHNVIETAAS-IPEGQNEL 278
Query: 127 KRQQLRELAMLNSNFRED 144
KR QLRELA LN R+D
Sbjct: 279 KRNQLRELAALNGTLRDD 296
Score = 36 (17.7 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 132 RELAMLNSNFREDSPGPSG 150
RE+ L +PGP G
Sbjct: 369 REMEQLMQELSGGAPGPDG 387
>WB|WBGene00044674 [details] [associations]
symbol:B0280.17 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0008219 "cell death" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0009792 GO:GO:0008219 GO:GO:0000003 GO:GO:0003723
eggNOG:COG5176 GeneTree:ENSGT00550000074434 EMBL:FO080148
RefSeq:NP_001040836.2 ProteinModelPortal:Q2V4X2 SMR:Q2V4X2
EnsemblMetazoa:B0280.17 GeneID:4363051 KEGG:cel:CELE_B0280.17
UCSC:B0280.17 CTD:4363051 WormBase:B0280.17 HOGENOM:HOG000020938
InParanoid:Q2V4X2 OMA:IRGKGCT NextBio:959623 Uniprot:Q2V4X2
Length = 260
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 45/126 (35%), Positives = 79/126 (62%)
Query: 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRG 77
++I ++ P +T N N VGRL+GPRG +++++E GC+++IRGKG KD KE++LR
Sbjct: 138 EKIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRE 197
Query: 78 RPGYEHLNDPLHILIEADLPAN-IVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAM 136
R G+EHL +P+H++I + +L +++++E L+ D +KR QL +LA+
Sbjct: 198 RVGWEHLKEPIHVMISVRSDSEEAASEKLSSIKKMLQEFLEHTDSE---LKRSQLMQLAV 254
Query: 137 LNSNFR 142
+ +
Sbjct: 255 IEGTLK 260
>ZFIN|ZDB-GENE-000210-25 [details] [associations]
symbol:khdrbs1a "KH domain containing, RNA binding,
signal transduction associated 1a" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-000210-25 GO:GO:0003723 EMBL:CR376783
GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 EMBL:BC067717 IPI:IPI00504880 RefSeq:NP_571000.1
UniGene:Dr.153239 STRING:Q6NW56 Ensembl:ENSDART00000074787
GeneID:30082 KEGG:dre:30082 CTD:30082 InParanoid:Q6NW56 OMA:ADTEYYD
NextBio:20806567 Uniprot:Q6NW56
Length = 370
Score = 231 (86.4 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 51/131 (38%), Positives = 78/131 (59%)
Query: 10 ASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 69
AS S +R+L IPV YP FNFVG++LGP+G+++KR++ TG ++ + GKGS++D
Sbjct: 63 ASKSVRVKERVL---IPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDK 119
Query: 70 DKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIK 127
+KE++LR G P Y HL LH+ IE P +R+ A + +++ L PV E D +
Sbjct: 120 NKEEELRKGGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMPV-EGMDEMH 178
Query: 128 RQQLRELAMLN 138
+ LN
Sbjct: 179 PDAFMDPGFLN 189
>FB|FBgn0034739 [details] [associations]
symbol:CG3927 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISM;IEA] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0046331 "lateral inhibition" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0016607 GO:GO:0003723 GO:GO:0046331 HSSP:Q9BW01
eggNOG:COG5176 EMBL:AY075269 ProteinModelPortal:Q8T8U7 SMR:Q8T8U7
STRING:Q8T8U7 PaxDb:Q8T8U7 PRIDE:Q8T8U7 FlyBase:FBgn0034739
InParanoid:Q8T8U7 ArrayExpress:Q8T8U7 Bgee:Q8T8U7 Uniprot:Q8T8U7
Length = 275
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 52/144 (36%), Positives = 87/144 (60%)
Query: 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR 76
+K I ++ +PV+ +P FNF G++LGP+GNSL+R++ T C++ I+G+ S++D +KE++LR
Sbjct: 84 MKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELR 143
Query: 77 --GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLREL 134
G P Y HL+ L + + A P R+ A I + L P D++ D QQ REL
Sbjct: 144 SSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIP-DDNDDVWHEQQ-REL 201
Query: 135 AMLNSNFREDSPGPSGSVSPFNSS 158
+N + S G + ++P+ S+
Sbjct: 202 MEMNPKSAKKSNGLN--MAPYRSN 223
>FB|FBgn0022987 [details] [associations]
symbol:qkr54B "quaking related 54B" species:7227 "Drosophila
melanogaster" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
EMBL:AE013599 GO:GO:0005737 GO:GO:0003723
GeneTree:ENSGT00550000074434 KO:K14942 RefSeq:NP_523772.1
RefSeq:NP_725679.1 RefSeq:NP_725680.2 UniGene:Dm.667 GeneID:36966
KEGG:dme:Dmel_CG4816 CTD:36966 FlyBase:FBgn0022987 GenomeRNAi:36966
NextBio:801273 EMBL:AF096272 EMBL:AY095201 SMR:Q7KNS5
EnsemblMetazoa:FBtr0086923 EnsemblMetazoa:FBtr0086925
EnsemblMetazoa:FBtr0306248 UCSC:CG4816-RA InParanoid:Q7KNS5
OMA:AYARIAY Uniprot:Q7KNS5
Length = 428
Score = 230 (86.0 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 50/131 (38%), Positives = 80/131 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
R+ +P+ +P FNFVG+LLGP+GNSL+R++ T C++ + G+ S++D KE++LR P
Sbjct: 124 RVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDP 183
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
Y HLN LH+ I P R+ A + + L P +S D I+++QLREL M ++
Sbjct: 184 KYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIP--DSNDIIRQEQLREL-MDST 240
Query: 140 NFREDSPGPSG 150
+ ++ SG
Sbjct: 241 SLNDNDNAKSG 251
>RGD|620645 [details] [associations]
symbol:Sf1 "splicing factor 1" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006917 "induction of apoptosis"
evidence=NAS] [GO:0022402 "cell cycle process" evidence=ISO]
[GO:0030238 "male sex determination" evidence=ISO] [GO:0033327
"Leydig cell differentiation" evidence=ISO] [GO:0048662 "negative
regulation of smooth muscle cell proliferation" evidence=IMP]
[GO:0050810 "regulation of steroid biosynthetic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:620645 GO:GO:0006917 GO:GO:0033327 GO:GO:0050810
GO:GO:0005681 GO:GO:0003723 GO:GO:0048662 HSSP:Q9BW01
eggNOG:COG5176 GO:GO:0022402 GO:GO:0030238 HOGENOM:HOG000237321
OrthoDB:EOG4VHK6F IPI:IPI00558327 EMBL:AF079873 UniGene:Rn.1074
UniGene:Rn.220071 STRING:O88629 UCSC:RGD:620645 InParanoid:O88629
ArrayExpress:O88629 Genevestigator:O88629 Uniprot:O88629
Length = 173
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 28 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 86
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 87 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 141
Query: 140 NFRED 144
RED
Sbjct: 142 TLRED 146
>FB|FBgn0034659 [details] [associations]
symbol:CG4021 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=ISM;IEA] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014
SMART:SM00322 EMBL:AE013599 GO:GO:0016607 GO:GO:0003723
GeneTree:ENSGT00550000074434 RefSeq:NP_611610.2 UniGene:Dm.15712
ProteinModelPortal:Q9W2D0 SMR:Q9W2D0 STRING:Q9W2D0
EnsemblMetazoa:FBtr0071716 GeneID:37484 KEGG:dme:Dmel_CG4021
UCSC:CG4021-RA FlyBase:FBgn0034659 InParanoid:Q9W2D0
OrthoDB:EOG4SQVCF PhylomeDB:Q9W2D0 GenomeRNAi:37484 NextBio:803886
ArrayExpress:Q9W2D0 Bgee:Q9W2D0 Uniprot:Q9W2D0
Length = 319
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 46/132 (34%), Positives = 80/132 (60%)
Query: 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR 76
+K I ++ +PV+ YP FNF G++LGP+GNSL+R++ T C++ ++G+ S++D +KE++LR
Sbjct: 82 MKIIQKVFVPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIALKGRSSMRDRNKEEELR 141
Query: 77 GRPGYEHLNDPLHILIEA-DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 135
P Y HL L + + +PA R+ A I + L P ++ D + +QLREL
Sbjct: 142 SDPRYAHLQKNLFLEVSTVAIPAECHS-RIAYALAEIRKYLIP--DNNDEVSHEQLRELM 198
Query: 136 MLNSNFREDSPG 147
++ ++ G
Sbjct: 199 EIDPESAKNFKG 210
>ZFIN|ZDB-GENE-030131-2492 [details] [associations]
symbol:sf1 "splicing factor 1" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50158 SMART:SM00322
SMART:SM00343 ZFIN:ZDB-GENE-030131-2492 GO:GO:0008270 GO:GO:0003723
GO:GO:0060041 eggNOG:COG5176 HOVERGEN:HBG063318 OrthoDB:EOG4VHK6F
EMBL:BC163938 IPI:IPI00902082 UniGene:Dr.132180 STRING:B3DKQ7
HOGENOM:HOG000170299 ArrayExpress:B3DKQ7 Uniprot:B3DKQ7
Length = 663
Score = 220 (82.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 211 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKE-GKVGRKDGQMLP 269
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 270 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 324
Query: 140 NFRED 144
RED
Sbjct: 325 TLRED 329
Score = 34 (17.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 140 NFREDSPGPSGSVSPFNSSGM 160
NF P G P N +GM
Sbjct: 458 NFPPPMPNMGGPPMPPNPNGM 478
>FB|FBgn0022984 [details] [associations]
symbol:qkr58E-3 "quaking related 58E-3" species:7227
"Drosophila melanogaster" [GO:0003723 "RNA binding"
evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003729
"mRNA binding" evidence=NAS] [GO:0006915 "apoptotic process"
evidence=IGI;IMP;IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0016607 "nuclear
speck" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0006915
GO:GO:0016607 GO:GO:0003723 HSSP:Q9BW01 GO:GO:0000381
FlyBase:FBgn0022984 EMBL:AY058724 ProteinModelPortal:Q95TJ8
DIP:DIP-21348N IntAct:Q95TJ8 MINT:MINT-310636 STRING:Q95TJ8
PRIDE:Q95TJ8 InParanoid:Q95TJ8 ArrayExpress:Q95TJ8 Bgee:Q95TJ8
Uniprot:Q95TJ8
Length = 320
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 48/128 (37%), Positives = 75/128 (58%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
+PV YP FNF G++LGP+GNSL+R++ T C++ I+G+ SI+D +KE++LR G P Y
Sbjct: 89 VPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYA 148
Query: 83 HLNDPLHILIEA-DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNF 141
HL L + + PA R+ A I + L P + D + +QLREL ++
Sbjct: 149 HLQKDLFLEVSTVATPAECY-ARIAYALAEIRKYLIP--DKNDEVSHEQLRELMEMDPES 205
Query: 142 REDSPGPS 149
++ GP+
Sbjct: 206 AKNIHGPN 213
>WB|WBGene00013808 [details] [associations]
symbol:sfa-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0046872 GO:GO:0008270
GO:GO:0010171 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0040020
HSSP:Q9BW01 KO:K13095 GeneTree:ENSGT00550000074434 EMBL:AL117204
EMBL:AJ243905 PIR:T31502 RefSeq:NP_503033.1 UniGene:Cel.19529
ProteinModelPortal:G5EF97 SMR:G5EF97 EnsemblMetazoa:Y116A8C.32
GeneID:178486 KEGG:cel:CELE_Y116A8C.32 CTD:178486
WormBase:Y116A8C.32 OMA:ANGARCS NextBio:901328 Uniprot:G5EF97
Length = 699
Score = 228 (85.3 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 53/137 (38%), Positives = 81/137 (59%)
Query: 12 PSSYTVKRIL---RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD 68
P+ Y I ++ IP + +P+ NFVG L+GPRGN+LK +EA TG ++ IRGKGSIK+
Sbjct: 293 PADYRAPNIRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
Query: 69 PDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKR 128
++L PG N+PLH + N++ + +++I E D ++ +++
Sbjct: 353 GKLTNRLGPMPGE---NEPLHAYVTGT-DMNVIKKACEKIKQVIAEATALPDNNE--LRK 406
Query: 129 QQLRELAMLNSNFR-ED 144
QLRELA+LN FR ED
Sbjct: 407 LQLRELALLNGTFRPED 423
>UNIPROTKB|B4DX42 [details] [associations]
symbol:SF1 "Splicing factor 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0022402 "cell cycle process"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0033327 "Leydig cell differentiation" evidence=IEA] [GO:0050810
"regulation of steroid biosynthetic process" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0048662
Gene3D:4.10.60.10 GO:GO:0022402 GO:GO:0030238 EMBL:AP001462
UniGene:Hs.502829 HGNC:HGNC:12950 HOVERGEN:HBG063318 ChiTaRS:SF1
EMBL:AK301803 IPI:IPI00386118 SMR:B4DX42 STRING:B4DX42
Ensembl:ENST00000422298 UCSC:uc010rnm.2 Uniprot:B4DX42
Length = 433
Score = 223 (83.6 bits), Expect = 6.7e-18, P = 6.7e-18
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 24 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 82
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 83 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 137
Query: 140 NFRED 144
RED
Sbjct: 138 TLRED 142
>UNIPROTKB|K7GNY3 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004088
PROSITE:PS50084 GeneTree:ENSGT00550000074434 EMBL:CU151851
Ensembl:ENSSSCT00000035168 Uniprot:K7GNY3
Length = 242
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 35 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILI 92
FVG+LLGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y HLND LH+LI
Sbjct: 1 FVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLI 60
Query: 93 EADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
E P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 61 EVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 104
>UNIPROTKB|F1LM37 [details] [associations]
symbol:Sf1 "Protein Sf1" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 RGD:620645
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10
GeneTree:ENSGT00550000074434 IPI:IPI00558327
Ensembl:ENSRNOT00000044866 ArrayExpress:F1LM37 Uniprot:F1LM37
Length = 548
Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>UNIPROTKB|E2RRT4 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GeneTree:ENSGT00550000074434 OMA:GDGPSHE EMBL:AAEX03011644
ProteinModelPortal:E2RRT4 Ensembl:ENSCAFT00000022618 Uniprot:E2RRT4
Length = 638
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>UNIPROTKB|A2VDM7 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050810 "regulation of steroid biosynthetic process"
evidence=IEA] [GO:0033327 "Leydig cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0005681 GO:GO:0003723
eggNOG:COG5176 KO:K13095 GeneTree:ENSGT00550000074434 GO:GO:0022402
GO:GO:0030238 CTD:7536 HOVERGEN:HBG063318 OMA:GDGPSHE
EMBL:DAAA02063538 EMBL:BC133313 IPI:IPI00729661 IPI:IPI00999378
RefSeq:NP_001075083.1 UniGene:Bt.7991 SMR:A2VDM7 STRING:A2VDM7
Ensembl:ENSBTAT00000001376 GeneID:541229 KEGG:bta:541229
NextBio:20879080 Uniprot:A2VDM7
Length = 639
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>UNIPROTKB|Q15637 [details] [associations]
symbol:SF1 "Splicing factor 1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0030238 "male
sex determination" evidence=IEA] [GO:0033327 "Leydig cell
differentiation" evidence=IEA] [GO:0050810 "regulation of steroid
biosynthetic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0005840 "ribosome" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
GO:GO:0005634 GO:GO:0003714 GO:GO:0006355 GO:GO:0033327
GO:GO:0050810 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0005840 GO:GO:0048662
eggNOG:COG5176 KO:K13095 GO:GO:0022402 GO:GO:0030238 GO:GO:0000389
EMBL:AP001462 EMBL:Y08765 EMBL:Y08766 EMBL:L49345 EMBL:L49380
EMBL:D26120 EMBL:AK293753 EMBL:BC000773 EMBL:BC008080 EMBL:BC008724
EMBL:BC011657 EMBL:BC020217 EMBL:BC038446 EMBL:AJ000051
EMBL:AJ000052 IPI:IPI00294627 IPI:IPI00386114 IPI:IPI00386117
IPI:IPI00386119 IPI:IPI00386120 IPI:IPI00852591 IPI:IPI00941553
PIR:G02919 RefSeq:NP_001171501.1 RefSeq:NP_001171502.1
RefSeq:NP_004621.2 RefSeq:NP_973724.1 RefSeq:NP_973726.2
RefSeq:NP_973727.1 UniGene:Hs.502829 PDB:1K1G PDB:4FXW PDB:4FXX
PDBsum:1K1G PDBsum:4FXW PDBsum:4FXX ProteinModelPortal:Q15637
SMR:Q15637 DIP:DIP-29410N IntAct:Q15637 MINT:MINT-1582417
STRING:Q15637 DMDM:38258418 PaxDb:Q15637 PRIDE:Q15637 DNASU:7536
Ensembl:ENST00000227503 Ensembl:ENST00000334944
Ensembl:ENST00000377387 Ensembl:ENST00000377390
Ensembl:ENST00000377394 Ensembl:ENST00000433274 GeneID:7536
KEGG:hsa:7536 UCSC:uc001oaz.2 UCSC:uc001oba.2 UCSC:uc001obb.2
UCSC:uc001obc.2 UCSC:uc001obd.2 CTD:7536 GeneCards:GC11M064532
HGNC:HGNC:12950 HPA:HPA018883 MIM:601516 neXtProt:NX_Q15637
PharmGKB:PA37533 HOVERGEN:HBG063318 ChiTaRS:SF1
EvolutionaryTrace:Q15637 GenomeRNAi:7536 NextBio:29487
ArrayExpress:Q15637 Bgee:Q15637 CleanEx:HS_SF1
Genevestigator:Q15637 GermOnline:ENSG00000168066 Uniprot:Q15637
Length = 639
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>UNIPROTKB|F1RQR0 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050810 "regulation of steroid biosynthetic process"
evidence=IEA] [GO:0033327 "Leydig cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0005681 GO:GO:0003723
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
OMA:GDGPSHE EMBL:FP101995 Ensembl:ENSSSCT00000014232
ArrayExpress:F1RQR0 Uniprot:F1RQR0
Length = 639
Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>MGI|MGI:1095403 [details] [associations]
symbol:Sf1 "splicing factor 1" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0022402
"cell cycle process" evidence=IGI] [GO:0030238 "male sex
determination" evidence=IGI] [GO:0033327 "Leydig cell
differentiation" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=ISO] [GO:0050810 "regulation of
steroid biosynthetic process" evidence=IGI] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
MGI:MGI:1095403 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0033327 GO:GO:0050810 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0048662 Gene3D:4.10.60.10 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
EMBL:AC127556 HOVERGEN:HBG063318 ChiTaRS:SF1 EMBL:X80159
EMBL:X85802 EMBL:Y08907 EMBL:Y12838 EMBL:AC167245 EMBL:BC009091
EMBL:BC055370 IPI:IPI00116284 IPI:IPI00387376 IPI:IPI01008154
UniGene:Mm.256422 ProteinModelPortal:Q64213 SMR:Q64213
STRING:Q64213 PhosphoSite:Q64213 PaxDb:Q64213 PRIDE:Q64213
Ensembl:ENSMUST00000131252 HOGENOM:HOG000237321 InParanoid:Q64213
OMA:GDGPSHE Bgee:Q64213 CleanEx:MM_SF1 Genevestigator:Q64213
GermOnline:ENSMUSG00000024949 Uniprot:Q64213
Length = 653
Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>UNIPROTKB|F1LSC3 [details] [associations]
symbol:Sf1 "Protein Sf1" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 RGD:620645
GO:GO:0033327 GO:GO:0050810 GO:GO:0046872 GO:GO:0008270
GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
IPI:IPI00561804 PRIDE:F1LSC3 Ensembl:ENSRNOT00000028628
ArrayExpress:F1LSC3 Uniprot:F1LSC3
Length = 653
Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 49/125 (39%), Positives = 77/125 (61%)
Query: 22 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--P 79
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ K + G+ P
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLP 197
Query: 80 GYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 139
G + +PLH L+ A+ N+ + Q + I+++ ++ ++ D +++ QLRELA LN
Sbjct: 198 GED---EPLHALVTANTMENVKKA-VEQIRNILKQGIETPEDQND-LRKMQLRELARLNG 252
Query: 140 NFRED 144
RED
Sbjct: 253 TLRED 257
>POMBASE|SPCC962.06c [details] [associations]
symbol:bpb1 "zinc finger splicing factor Bpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 PomBase:SPCC962.06c
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 GO:GO:0000243 EMBL:AF073779
PIR:T41653 RefSeq:NP_587871.1 ProteinModelPortal:O74555 SMR:O74555
STRING:O74555 EnsemblFungi:SPCC962.06c.1 GeneID:2538832
KEGG:spo:SPCC962.06c HOGENOM:HOG000197271 OMA:RIEEISH
OrthoDB:EOG4HQHTF NextBio:20800014 GO:GO:0000349 Uniprot:O74555
Length = 587
Score = 222 (83.2 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 53/137 (38%), Positives = 79/137 (57%)
Query: 11 SPSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD 68
+PS Y K ++ +PV YP NF+G L+GPRG++LK +EA +G ++ IRGKGS+K
Sbjct: 176 APSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVK- 234
Query: 69 PDKEDKLRGRPGYE-HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIK 127
E K R P ++ + LH L+ AD I + ++ +I+ V E Q+ +K
Sbjct: 235 ---EGKGRSDPSVRGNMEEDLHCLVTADSEDKI-NHAIKLIDNVIQTAAS-VPEGQNDLK 289
Query: 128 RQQLRELAMLNSNFRED 144
R QLR+LA LN R+D
Sbjct: 290 RNQLRQLATLNGTLRDD 306
>FB|FBgn0034740 [details] [associations]
symbol:nsr "novel spermatogenesis regulator" species:7227
"Drosophila melanogaster" [GO:0003723 "RNA binding"
evidence=ISM;IEA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IMP] [GO:0007291 "sperm individualization" evidence=IMP]
[GO:0007288 "sperm axoneme assembly" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:AE013599 GO:GO:0016607 GO:GO:0003723
GO:GO:0007291 HSSP:Q9BW01 GeneTree:ENSGT00550000074434
GO:GO:0007288 GO:GO:0010608 RefSeq:NP_611682.1
ProteinModelPortal:Q9W224 SMR:Q9W224 MINT:MINT-834857 STRING:Q9W224
EnsemblMetazoa:FBtr0071861 GeneID:37577 KEGG:dme:Dmel_CG3875
UCSC:CG3875-RA CTD:37577 FlyBase:FBgn0034740 InParanoid:Q9W224
OrthoDB:EOG4SXKV2 PhylomeDB:Q9W224 GenomeRNAi:37577 NextBio:804376
ArrayExpress:Q9W224 Bgee:Q9W224 Uniprot:Q9W224
Length = 340
Score = 212 (79.7 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 48/135 (35%), Positives = 80/135 (59%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYE 82
+PV+ +P FNF ++LGP+GNS++R++ T C++ I+G+ S++D +KE++LR G P Y
Sbjct: 92 VPVNKFPKFNFARKILGPKGNSVRRLKEETNCKIVIKGRSSMRDRNKEEELRSSGDPRYA 151
Query: 83 HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR 142
HL+ L + + A P R+ A I + L P D++ D QQ REL +N
Sbjct: 152 HLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIP-DDNDDVWHEQQ-RELMEMNPESA 209
Query: 143 EDSPGPSGSVSPFNS 157
+ S G + ++P+ S
Sbjct: 210 KKSNGLN--MAPYRS 222
>FB|FBgn0034731 [details] [associations]
symbol:CG10384 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 EMBL:AE013599 GO:GO:0003723
GeneTree:ENSGT00550000074434 UniGene:Dm.10916 GeneID:37567
KEGG:dme:Dmel_CG10384 FlyBase:FBgn0034731 GenomeRNAi:37567
NextBio:804326 RefSeq:NP_611673.2 ProteinModelPortal:Q9W249
SMR:Q9W249 PRIDE:Q9W249 EnsemblMetazoa:FBtr0300683 UCSC:CG10384-RA
InParanoid:Q9W249 OMA:DYHDDIR PhylomeDB:Q9W249 ArrayExpress:Q9W249
Bgee:Q9W249 Uniprot:Q9W249
Length = 470
Score = 215 (80.7 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 54/146 (36%), Positives = 83/146 (56%)
Query: 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR 76
VK +++ +PV +P FNFVG+LLGP+GNS+KR++ T C++ + G+GS++D KE++LR
Sbjct: 10 VKVAVKVAVPVRDHPKFNFVGKLLGPKGNSMKRLQEDTMCKMAVLGRGSMRDRRKEEELR 69
Query: 77 GRPG--YEHLNDPLHILIEA-DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRE 133
G Y HL + LH+ I PA R+ A + L P + D I+++Q+ E
Sbjct: 70 GSGDSRYAHLFEDLHVEISTFAAPAE-AHARIAYALAEVRRFLVP--DYHDDIRQEQMWE 126
Query: 134 LAMLNSNFREDSPGPSGSVSP-FNSS 158
+ L S + S SP NSS
Sbjct: 127 MQALTSTPALGAHSLEDSHSPTINSS 152
>FB|FBgn0025571 [details] [associations]
symbol:SF1 "Splicing factor 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 EMBL:AE014297
GO:GO:0022008 GO:GO:0008270 GO:GO:0003723 GO:GO:0002121
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0007476 GO:GO:0071011
GO:GO:0000398 HSSP:Q9BW01 KO:K13095 GeneTree:ENSGT00550000074434
CTD:7536 ChiTaRS:SF1 OMA:PPLMPWM FlyBase:FBgn0025571 EMBL:BT031265
RefSeq:NP_524654.2 UniGene:Dm.3761 SMR:Q9VEJ1 MINT:MINT-896516
STRING:Q9VEJ1 EnsemblMetazoa:FBtr0083456 GeneID:43912
KEGG:dme:Dmel_CG5836 UCSC:CG5836-RA InParanoid:Q9VEJ1
GenomeRNAi:43912 NextBio:836343 Uniprot:Q9VEJ1
Length = 787
Score = 218 (81.8 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 53/136 (38%), Positives = 83/136 (61%)
Query: 12 PSSYT--VKRIL-RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD 68
P+ Y V R+ ++ IP + +P+ NFVG L+GPRGN+LK +E TG ++ IRGKGS+K+
Sbjct: 381 PADYKPPVTRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKE 440
Query: 69 PDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKR 128
K + G+P ++PLH I A P V + + +++I + ++ V E + ++R
Sbjct: 441 -GKVGRKDGQP-LPGEDEPLHAFITAPNP-EAVRKAVDKIKDVIRQGIE-VPEGHNDLRR 496
Query: 129 QQLRELAMLNSNFRED 144
QLRELA LN RE+
Sbjct: 497 MQLRELAQLNGTLREN 512
>FB|FBgn0022986 [details] [associations]
symbol:qkr58E-1 "quaking related 58E-1" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 SMART:SM00322
GO:GO:0022008 GO:GO:0003723 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 HSSP:Q9BW01 eggNOG:COG5176 OrthoDB:EOG4SBCDH
EMBL:AF038584 ProteinModelPortal:O44435 SMR:O44435 PaxDb:O44435
PRIDE:O44435 FlyBase:FBgn0022986 InParanoid:O44435
ArrayExpress:O44435 Bgee:O44435 Uniprot:O44435
Length = 396
Score = 203 (76.5 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 26 PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEH 83
P+ YP FNFVG++LGP+GN+L++++ T C++ + G S++D KE++LR G P Y H
Sbjct: 120 PIKEYPKFNFVGKILGPKGNTLRQLQEETMCKMVVMGGNSMRDHGKEEELRSSGNPKYAH 179
Query: 84 LNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLREL 134
L+ LH+ I P R+ A I + + P ++ D I+ +QLRE+
Sbjct: 180 LSRDLHVEISTVAPPAEAYHRISYALGEIRKFMIP--DANDDIRLEQLREM 228
>UNIPROTKB|H0YAQ3 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] GO:GO:0005634 HGNC:HGNC:18117 EMBL:AC040914
EMBL:AC104371 Ensembl:ENST00000517859 Uniprot:H0YAQ3
Length = 196
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 47/101 (46%), Positives = 63/101 (62%)
Query: 40 LGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLP 97
LGPRGNSLKR++ T ++ I GKGS++D KE++LR G Y HLND LH+LIE P
Sbjct: 2 LGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAP 61
Query: 98 ANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 62 PAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 100
>FB|FBgn0022985 [details] [associations]
symbol:qkr58E-2 "quaking related 58E-2" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 EMBL:AE013599
GO:GO:0003723 HSSP:Q9BW01 GeneTree:ENSGT00550000074434
FlyBase:FBgn0022985 EMBL:BT021292 RefSeq:NP_523810.2
UniGene:Dm.7238 SMR:Q9W254 EnsemblMetazoa:FBtr0071828 GeneID:37562
KEGG:dme:Dmel_CG5821 UCSC:CG5821-RA CTD:37562 InParanoid:Q9W254
OMA:LRNSADA GenomeRNAi:37562 NextBio:804299 Uniprot:Q9W254
Length = 416
Score = 200 (75.5 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 45/121 (37%), Positives = 70/121 (57%)
Query: 16 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKL 75
T+K ++ +P+ FN+VG+LLGP+GNSL+R++ T C++ I G+ S+KD +E++L
Sbjct: 125 TIKLSQKVHVPIKD-KKFNYVGKLLGPKGNSLRRLQEETQCKIVILGRFSMKDRAREEEL 183
Query: 76 RGRPG--YEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRE 133
R Y HLN PLH+ + P R+ A I L P + D I+++Q RE
Sbjct: 184 RNSADAKYAHLNLPLHVEVSTIAPPAEAYARVAYALAEIRRYLTP--DKHDDIRQEQYRE 241
Query: 134 L 134
L
Sbjct: 242 L 242
>GENEDB_PFALCIPARUM|PFF1135w [details] [associations]
symbol:PFF1135w "transcription or splicing
factor-like protein, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
SMART:SM00343 GO:GO:0008380 GO:GO:0008270 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K13095 EMBL:AL844505
RefSeq:XP_966218.1 ProteinModelPortal:C6KT72
EnsemblProtists:PFF1135w:mRNA GeneID:3885872 KEGG:pfa:PFF1135w
EuPathDB:PlasmoDB:PF3D7_0623600 HOGENOM:HOG000281592
ProtClustDB:CLSZ2433258 Uniprot:C6KT72
Length = 615
Score = 201 (75.8 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 10 ASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 69
A P+ +K+I ++EIP+D YP +NF+G ++GPRG + KR+EA +G ++ IRGKG++K+
Sbjct: 148 APPTYKPIKKIRKIEIPIDKYPEYNFMGLIIGPRGCNHKRLEAESGAQISIRGKGTLKEG 207
Query: 70 DKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQ 129
K D + E P H+ I AD + +A +I LL P + KR+
Sbjct: 208 KKTDH---QTEIEAAM-PKHVHIAADTEECV-----EKAVSLITPLLDPFHPLHEEYKRK 258
Query: 130 QLRELAMLN 138
L +LA++N
Sbjct: 259 GLEQLALVN 267
>UNIPROTKB|C6KT72 [details] [associations]
symbol:PFF1135w "Transcription or splicing factor-like
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
SMART:SM00343 GO:GO:0008380 GO:GO:0008270 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K13095 EMBL:AL844505
RefSeq:XP_966218.1 ProteinModelPortal:C6KT72
EnsemblProtists:PFF1135w:mRNA GeneID:3885872 KEGG:pfa:PFF1135w
EuPathDB:PlasmoDB:PF3D7_0623600 HOGENOM:HOG000281592
ProtClustDB:CLSZ2433258 Uniprot:C6KT72
Length = 615
Score = 201 (75.8 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 10 ASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 69
A P+ +K+I ++EIP+D YP +NF+G ++GPRG + KR+EA +G ++ IRGKG++K+
Sbjct: 148 APPTYKPIKKIRKIEIPIDKYPEYNFMGLIIGPRGCNHKRLEAESGAQISIRGKGTLKEG 207
Query: 70 DKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQ 129
K D + E P H+ I AD + +A +I LL P + KR+
Sbjct: 208 KKTDH---QTEIEAAM-PKHVHIAADTEECV-----EKAVSLITPLLDPFHPLHEEYKRK 258
Query: 130 QLRELAMLN 138
L +LA++N
Sbjct: 259 GLEQLALVN 267
>WB|WBGene00013325 [details] [associations]
symbol:Y57G11C.36 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
EMBL:Z99281 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 RefSeq:NP_872088.1
ProteinModelPortal:Q8I4C4 SMR:Q8I4C4 EnsemblMetazoa:Y57G11C.36.1
EnsemblMetazoa:Y57G11C.36.2 EnsemblMetazoa:Y57G11C.36.3
GeneID:259844 KEGG:cel:CELE_Y57G11C.36 UCSC:Y57G11C.36.1 CTD:259844
WormBase:Y57G11C.36 HOGENOM:HOG000022069 InParanoid:Q8I4C4
OMA:HMYELMN NextBio:952632 Uniprot:Q8I4C4
Length = 380
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 51/141 (36%), Positives = 74/141 (52%)
Query: 25 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHL 84
+PV+ +P++NFVGRLLGPRG + K++E TTGCR+ I G+ K D P +
Sbjct: 118 VPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR------TKRDGSSSNP--DVT 169
Query: 85 NDPLHILIE--ADLP--ANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSN 140
PL + I AD+P A ++ + Q I++ P D D +KRQQL LA +N
Sbjct: 170 TGPLRVQISVPADMPQAAKLLKGGVGHIQAILDV---PTD-GNDELKRQQLLILANMNGT 225
Query: 141 FRE----DSPGPSGSVSPFNS 157
++ SPG PF +
Sbjct: 226 YQPRGSATSPGSGDYGHPFQN 246
>UNIPROTKB|H0YAQ1 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] GO:GO:0005634 HGNC:HGNC:18117 EMBL:AC040914
EMBL:AC104371 Ensembl:ENST00000524282 Uniprot:H0YAQ1
Length = 195
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 50 VEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQ 107
++ T ++ I GKGS++D KE++LR G Y HLND LH+LIE P R+
Sbjct: 2 LQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGH 61
Query: 108 AQEIIEELLKPVDESQDYIKRQQLRELAMLN 138
A E I++ L P + D I++ QL+EL LN
Sbjct: 62 ALEEIKKFLIP--DYNDEIRQAQLQELTYLN 90
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.136 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 167 167 0.00075 108 3 11 22 0.43 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 589 (63 KB)
Total size of DFA: 144 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.81u 0.24s 19.05t Elapsed: 00:00:01
Total cpu time: 18.82u 0.24s 19.06t Elapsed: 00:00:01
Start: Fri May 10 08:34:26 2013 End: Fri May 10 08:34:27 2013