Query 031032
Match_columns 167
No_of_seqs 141 out of 570
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 4.9E-49 1.7E-53 305.8 5.0 129 19-147 2-130 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 2.5E-42 8.7E-47 265.1 7.2 124 16-146 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 9E-31 3.1E-35 198.1 7.3 107 10-130 4-111 (119)
4 2opv_A KHSRP protein; KH domai 99.4 2.6E-13 8.8E-18 95.6 6.8 72 18-117 13-84 (85)
5 2ctk_A Vigilin; K homology typ 99.3 4.9E-13 1.7E-17 98.1 1.8 73 14-118 12-84 (104)
6 1dtj_A RNA-binding neurooncolo 99.3 4.1E-12 1.4E-16 87.1 5.9 73 18-117 2-74 (76)
7 1x4m_A FAR upstream element bi 99.3 4.9E-12 1.7E-16 90.7 6.1 76 16-119 12-87 (94)
8 1we8_A Tudor and KH domain con 99.3 4.1E-12 1.4E-16 92.7 5.2 78 12-117 8-85 (104)
9 1vig_A Vigilin; RNA-binding pr 99.3 5.2E-12 1.8E-16 86.3 5.4 66 20-117 6-71 (71)
10 1x4n_A FAR upstream element bi 99.2 4.7E-12 1.6E-16 90.5 4.1 72 17-118 13-84 (92)
11 2hh3_A KH-type splicing regula 99.2 7.6E-12 2.6E-16 92.1 3.5 72 17-118 9-80 (106)
12 2hh2_A KH-type splicing regula 99.2 1.8E-11 6.2E-16 89.8 5.2 73 20-119 8-80 (107)
13 2p2r_A Poly(RC)-binding protei 99.2 7.1E-12 2.4E-16 86.2 2.6 71 18-118 4-74 (76)
14 1wvn_A Poly(RC)-binding protei 99.2 1.2E-11 3.9E-16 86.4 3.5 71 18-118 5-75 (82)
15 1zzk_A Heterogeneous nuclear r 99.2 1.9E-11 6.5E-16 85.4 4.6 70 18-117 6-75 (82)
16 2cte_A Vigilin; K homology typ 99.2 1.6E-11 5.4E-16 88.1 4.0 68 18-117 16-83 (94)
17 2axy_A Poly(RC)-binding protei 99.1 1.1E-11 3.6E-16 85.2 2.4 69 17-117 3-71 (73)
18 2ctm_A Vigilin; K homology typ 99.1 2.8E-11 9.6E-16 87.3 4.4 69 18-117 16-84 (95)
19 1ec6_A RNA-binding protein NOV 99.1 1.6E-11 5.6E-16 86.5 2.7 73 18-117 2-74 (87)
20 2cpq_A FragIle X mental retard 99.1 1.7E-11 5.7E-16 88.6 2.5 66 18-118 14-81 (91)
21 2ctl_A Vigilin; K homology typ 99.1 5.8E-11 2E-15 85.9 5.1 70 19-117 17-86 (97)
22 2dgr_A Ring finger and KH doma 99.1 9E-11 3.1E-15 82.9 4.6 67 18-117 9-75 (83)
23 1j5k_A Heterogeneous nuclear r 99.1 3.4E-11 1.2E-15 85.4 2.5 71 18-118 13-83 (89)
24 3u1k_A Polyribonucleotide nucl 99.0 7.3E-11 2.5E-15 109.6 3.4 72 11-117 559-630 (630)
25 2ctj_A Vigilin; K homology typ 99.0 1E-10 3.4E-15 84.6 2.1 67 20-118 18-85 (95)
26 2jvz_A KH type-splicing, FAR u 98.8 4.9E-09 1.7E-13 80.1 6.5 72 20-119 3-74 (164)
27 3krm_A Insulin-like growth fac 98.8 2.1E-09 7.3E-14 82.5 4.3 73 18-118 84-156 (163)
28 4aid_A Polyribonucleotide nucl 98.8 6.9E-10 2.4E-14 104.5 1.2 75 12-121 563-637 (726)
29 1j4w_A FUSE binding protein; s 98.8 4.1E-09 1.4E-13 81.9 4.9 71 19-116 104-174 (174)
30 2jvz_A KH type-splicing, FAR u 98.8 2.4E-09 8.1E-14 81.9 2.9 69 20-118 92-160 (164)
31 2jzx_A Poly(RC)-binding protei 98.7 4.1E-09 1.4E-13 80.7 3.2 74 15-117 85-158 (160)
32 2jzx_A Poly(RC)-binding protei 98.7 3.3E-09 1.1E-13 81.2 2.4 70 16-117 2-71 (160)
33 2e3u_A PH-DIM2P, hypothetical 98.7 3.8E-09 1.3E-13 86.6 2.7 69 14-117 29-102 (219)
34 1j4w_A FUSE binding protein; s 98.7 5.6E-09 1.9E-13 81.1 2.3 69 20-118 4-72 (174)
35 2anr_A Neuro-oncological ventr 98.6 6.5E-09 2.2E-13 80.9 1.9 74 18-119 103-176 (178)
36 2anr_A Neuro-oncological ventr 98.6 1.5E-08 5E-13 78.9 3.8 75 19-120 6-80 (178)
37 3krm_A Insulin-like growth fac 98.6 1.7E-08 5.7E-13 77.5 3.9 71 18-117 2-72 (163)
38 3cdi_A Polynucleotide phosphor 98.3 8E-08 2.7E-12 90.5 0.0 72 13-119 554-625 (723)
39 1tua_A Hypothetical protein AP 98.3 4.1E-07 1.4E-11 73.3 4.0 53 35-118 108-160 (191)
40 2e3u_A PH-DIM2P, hypothetical 98.2 5.8E-07 2E-11 73.6 3.2 53 35-118 139-191 (219)
41 1e3p_A Guanosine pentaphosphat 98.1 1.5E-07 5E-12 89.1 -3.9 71 11-116 590-660 (757)
42 2qnd_A FMR1 protein; KH domain 97.9 5.8E-06 2E-10 63.1 3.2 71 21-117 69-141 (144)
43 2ctf_A Vigilin; K homology typ 97.8 2.9E-05 9.9E-10 56.3 5.3 64 19-117 27-91 (102)
44 3n89_A Defective in GERM LINE 97.5 9.2E-05 3.1E-09 65.1 5.8 73 18-115 29-103 (376)
45 2qnd_A FMR1 protein; KH domain 97.2 0.00014 4.7E-09 55.4 2.8 34 19-60 4-37 (144)
46 1tua_A Hypothetical protein AP 96.7 0.00082 2.8E-08 53.9 2.8 70 20-119 5-74 (191)
47 3n89_A Defective in GERM LINE 95.8 0.0078 2.7E-07 52.8 4.4 72 19-116 186-259 (376)
48 3v69_A Protein filia; RNA-bind 95.5 0.0092 3.1E-07 45.8 3.2 28 34-61 65-92 (140)
49 2z0s_A Probable exosome comple 90.8 0.61 2.1E-05 37.7 6.8 68 34-128 157-224 (235)
50 2cxc_A NUSA; transcription ter 86.0 0.16 5.6E-06 38.8 0.3 29 35-63 46-74 (144)
51 2ba0_A Archeal exosome RNA bin 82.3 1.9 6.5E-05 34.8 5.2 73 34-135 145-217 (229)
52 2je6_I RRP4, exosome complex R 79.9 0.15 5.1E-06 42.1 -2.3 56 34-115 164-219 (251)
53 1k0r_A NUSA; two component arr 72.6 0.83 2.8E-05 39.9 0.3 34 29-62 244-278 (366)
54 2asb_A Transcription elongatio 71.8 0.81 2.8E-05 38.0 0.1 35 29-63 121-156 (251)
55 2nn6_G Exosome complex exonucl 70.0 2.6 8.8E-05 35.5 2.8 56 34-115 219-274 (289)
56 2ja9_A Exosome complex exonucl 67.1 2.8 9.5E-05 32.7 2.2 55 34-114 100-156 (175)
57 1y14_B B16, RPB7, DNA-directed 65.6 0.12 4.2E-06 39.7 -5.8 39 9-61 14-52 (171)
58 1go3_E DNA-directed RNA polyme 62.8 2.6 8.8E-05 32.4 1.3 40 17-65 5-56 (187)
59 1hh2_P NUSA, N utilization sub 59.9 2.8 9.5E-05 36.1 1.1 34 29-62 240-274 (344)
60 3k5i_A Phosphoribosyl-aminoimi 57.4 18 0.00061 30.6 5.8 62 36-113 333-399 (403)
61 2pt7_G HP1451, hypothetical pr 54.1 1.8 6.3E-05 33.2 -0.9 21 35-55 43-63 (152)
62 2cxc_A NUSA; transcription ter 53.3 1.7 5.7E-05 33.1 -1.3 37 19-61 103-139 (144)
63 1wjw_A Phosphoacetylglucosamin 49.5 56 0.0019 23.0 6.5 51 45-115 45-96 (112)
64 1xao_A YDJ1, mitochondrial pro 40.9 39 0.0013 24.1 4.6 49 53-117 47-97 (121)
65 2b8k_G B16, DNA-directed RNA p 39.5 0.87 3E-05 36.6 -5.1 32 10-47 15-46 (215)
66 3szp_A Transcriptional regulat 37.6 21 0.00071 26.9 2.7 20 45-64 34-53 (291)
67 3eth_A Phosphoribosylaminoimid 37.4 42 0.0014 28.2 4.9 45 36-98 282-326 (355)
68 2esn_A Probable transcriptiona 37.1 21 0.00072 27.5 2.8 19 45-63 43-61 (310)
69 2asb_A Transcription elongatio 33.5 13 0.00045 30.7 1.0 39 19-63 184-222 (251)
70 1hh2_P NUSA, N utilization sub 32.2 18 0.00061 31.1 1.7 38 19-62 303-340 (344)
71 4e4t_A Phosphoribosylaminoimid 31.4 61 0.0021 27.5 5.0 50 47-112 365-414 (419)
72 3gku_A Probable RNA-binding pr 31.2 6.4 0.00022 32.0 -1.2 22 35-56 102-123 (225)
73 1k0r_A NUSA; two component arr 30.8 15 0.00052 31.9 1.0 38 19-62 307-344 (366)
74 3iev_A GTP-binding protein ERA 30.0 18 0.00062 29.4 1.4 40 17-61 238-285 (308)
75 2kie_A Inositol polyphosphate 27.6 17 0.00057 26.9 0.6 15 50-64 81-95 (124)
76 2c35_B Human RPB7, DNA-directe 27.5 1.9 6.6E-05 32.8 -4.7 41 13-67 18-60 (172)
77 3u42_A 50S ribosomal protein L 27.2 37 0.0013 27.3 2.7 62 35-116 127-201 (229)
78 3hhg_A Transcriptional regulat 27.0 24 0.00082 27.0 1.5 20 45-64 36-55 (306)
79 1ais_A TBP, protein (tata-bind 26.1 1.6E+02 0.0055 22.6 6.2 25 89-117 155-179 (182)
80 3fxq_A LYSR type regulator of 25.9 35 0.0012 26.3 2.3 20 45-64 35-54 (305)
81 2wwq_5 50S ribosomal protein L 25.2 1.1E+02 0.0037 24.6 5.1 62 35-116 126-200 (234)
82 3isp_A HTH-type transcriptiona 24.7 33 0.0011 26.4 1.9 20 45-64 39-58 (303)
83 3qoy_A 50S ribosomal protein L 24.2 89 0.003 25.3 4.5 68 30-117 125-205 (242)
84 2ijl_A AGR_C_4647P, molybdenum 23.9 95 0.0033 22.7 4.3 18 46-63 58-75 (135)
85 3i38_A Putative chaperone DNAJ 21.3 1.5E+02 0.0051 20.6 4.7 32 53-98 49-80 (109)
86 2q2g_A HSP40 protein, heat sho 20.0 1.1E+02 0.0036 23.2 3.9 28 85-116 152-179 (180)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=4.9e-49 Score=305.78 Aligned_cols=129 Identities=45% Similarity=0.851 Sum_probs=124.6
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
..+||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++.+++++++|+|+|+|++|||||+|++.+++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 47899999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHhcCccCCCCCC
Q 031032 99 NIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPG 147 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL~~~~~~~d~~k~~QL~elA~lnGt~r~~~~~ 147 (167)
++|++++++|+++|++||.++++++|++|++||+|||++|||||+++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCccc
Confidence 9999999999999999999999999999999999999999999998753
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=2.5e-42 Score=265.07 Aligned_cols=124 Identities=39% Similarity=0.656 Sum_probs=108.4
Q ss_pred ccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEec
Q 031032 16 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 95 (167)
Q Consensus 16 ~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~ 95 (167)
..+.++||+||+++||+|||||+||||+|+|+|+||++|||+|.|||+||+++.+.+ + .+...++|+++||||+|++.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~-~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG-R-KDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS-S-CCCCCSCCSSCCEEEEEEES
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc-c-cccccccccCCCeEEEEEEC
Confidence 457789999999999999999999999999999999999999999999999997654 2 22234779999999999998
Q ss_pred CCcchHHHHHHHHHHHHHhccCC---CCcchHHHHHHHHHHHHHhcCccCCCCC
Q 031032 96 LPANIVDIRLRQAQEIIEELLKP---VDESQDYIKRQQLRELAMLNSNFREDSP 146 (167)
Q Consensus 96 ~~~~~a~~~l~~A~~~Ie~LL~~---~~~~~d~~k~~QL~elA~lnGt~r~~~~ 146 (167)
+++ ++++|+++|+.||.+ +++++|++|++||+|||++|||||++++
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 876 899999999999976 7899999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=9e-31 Score=198.15 Aligned_cols=107 Identities=25% Similarity=0.354 Sum_probs=92.7
Q ss_pred CCCCCcccceEEEEecCCC-CCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCc
Q 031032 10 ASPSSYTVKRILRLEIPVD-TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPL 88 (167)
Q Consensus 10 ~~~~g~~~~~~~ki~IPv~-~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epL 88 (167)
.+|.|- ....+||+||++ .||+|||||+||||+|+|+|+|+++|||||.|||+||++.+.. ..++++|||
T Consensus 4 ~~~~~~-~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~--------~~~e~~e~l 74 (119)
T 2yqr_A 4 GSSGGM-HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA--------SGREAFEPM 74 (119)
T ss_dssp CCCSCC-SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT--------TSSCCSSBC
T ss_pred CCCCCe-eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc--------cccccCCCc
Confidence 334443 467899999999 6999999999999999999999999999999999999985432 224689999
Q ss_pred EEEEEecCCcchHHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 031032 89 HILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 130 (167)
Q Consensus 89 HV~Isa~~~~~~a~~~l~~A~~~Ie~LL~~~~~~~d~~k~~Q 130 (167)
||+|++.+++ ++++|+++|+.||.++.+.++++|++|
T Consensus 75 ~V~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 75 YIYISHPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp EEEEEESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 9999999877 899999999999999988888888654
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=95.60 Aligned_cols=72 Identities=22% Similarity=0.417 Sum_probs=59.7
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
.+..+|.||.+ ++|+|||++|+|+|+|+++|||+|.|...|+.. ...+-+|.|++ ++
T Consensus 13 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~ 69 (85)
T 2opv_A 13 GTVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DP 69 (85)
T ss_dssp SEEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CH
T ss_pred CEEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CH
Confidence 46778999987 999999999999999999999999999876411 12233799999 66
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|+++|+.++.
T Consensus 70 ~-----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 70 Y-----KVQQACEMVMDILR 84 (85)
T ss_dssp H-----HHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHhc
Confidence 5 78999999999875
No 5
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=4.9e-13 Score=98.08 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=62.9
Q ss_pred CcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEE
Q 031032 14 SYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIE 93 (167)
Q Consensus 14 g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Is 93 (167)
.+++++...+.||.+ ++|+||||+|+|+|+|+++|||+|.|-..|+. +=.|.|+
T Consensus 12 ~~~ap~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~--------------------~~~V~I~ 65 (104)
T 2ctk_A 12 EALVPVTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ--------------------SDIIAIT 65 (104)
T ss_dssp CCSSCEEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT--------------------CCEEEEE
T ss_pred HhhCCEEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCCC--------------------cceEEEE
Confidence 477889999999997 99999999999999999999999999876631 1189999
Q ss_pred ecCCcchHHHHHHHHHHHHHhccCC
Q 031032 94 ADLPANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 94 a~~~~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+.. + .+++|+++|+.++..
T Consensus 66 G~~-e-----~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 66 GLA-A-----NLDRAKAGLLERVKE 84 (104)
T ss_dssp ECH-H-----HHHHHHHHHHHHHHH
T ss_pred cCH-H-----HHHHHHHHHHHHHhh
Confidence 864 4 689999999999864
No 6
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.29 E-value=4.1e-12 Score=87.09 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=58.0
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
+...++.||.+ ++|+|||++|+|+|+|+++|||+|.|...+..... ...-.|.|++. +
T Consensus 2 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~---------------~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---------------TRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT---------------CCEEEEEEEES-H
T ss_pred ceEEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC---------------CceeEEEEEeC-H
Confidence 44678899987 99999999999999999999999999875421111 12238999985 4
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 4 78999999999886
No 7
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=4.9e-12 Score=90.73 Aligned_cols=76 Identities=20% Similarity=0.394 Sum_probs=62.1
Q ss_pred ccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEec
Q 031032 16 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 95 (167)
Q Consensus 16 ~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~ 95 (167)
+.....+|.||.+ ++|+|||++|+|+|+|+++|||+|.|...+... ...+-.|.|++
T Consensus 12 p~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G- 68 (94)
T 1x4m_A 12 PGNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG- 68 (94)
T ss_dssp CCCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-
T ss_pred CCcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-
Confidence 3556788999987 999999999999999999999999998765311 11234799999
Q ss_pred CCcchHHHHHHHHHHHHHhccCCC
Q 031032 96 LPANIVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 96 ~~~~~a~~~l~~A~~~Ie~LL~~~ 119 (167)
+++ .+++|+++|+.++...
T Consensus 69 ~~~-----~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 69 DPY-----KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CTT-----THHHHHHHHHHHHCCC
T ss_pred CHH-----HHHHHHHHHHHHHhcc
Confidence 565 6899999999999864
No 8
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.26 E-value=4.1e-12 Score=92.69 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEE
Q 031032 12 PSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHIL 91 (167)
Q Consensus 12 ~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~ 91 (167)
.-.++++.+.+|.||.+ ++|+|||++|+|+|+|+++|||+|.|....... ..++=.|.
T Consensus 8 ~~s~~ap~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~ 65 (104)
T 1we8_A 8 ILTENTPVFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIK 65 (104)
T ss_dssp CCSSSCEEEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEE
T ss_pred ccCCCCCEEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEE
Confidence 44578899999999997 999999999999999999999999998643111 01223899
Q ss_pred EEecCCcchHHHHHHHHHHHHHhccC
Q 031032 92 IEADLPANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 92 Isa~~~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
|++... .+++|+++|+.++.
T Consensus 66 I~G~~~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 66 ISGTQK------EVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEHH------HHHHHHHHHHHHHH
T ss_pred EEcCHH------HHHHHHHHHHHHHh
Confidence 998643 58999999999986
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.26 E-value=5.2e-12 Score=86.35 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=55.8
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
...+.||.+ ++|+||||+|+++++|+++|||+|.|-..|+ . +=.|.|++. .+
T Consensus 6 ~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--~------------------~~~V~I~G~-~~- 57 (71)
T 1vig_A 6 YVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE--K------------------SNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--S------------------SEEEEEEES-SH-
T ss_pred EEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC--c------------------ccEEEEEcC-HH-
Confidence 567889987 9999999999999999999999999987663 0 017999997 44
Q ss_pred hHHHHHHHHHHHHHhccC
Q 031032 100 IVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~ 117 (167)
.+++|+++|+.|+.
T Consensus 58 ----~v~~A~~~I~~i~~ 71 (71)
T 1vig_A 58 ----GVQQAKRELLELAS 71 (71)
T ss_dssp ----HHHHHHHHHHHTCC
T ss_pred ----HHHHHHHHHHHHhC
Confidence 68999999999863
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.24 E-value=4.7e-12 Score=90.48 Aligned_cols=72 Identities=15% Similarity=0.423 Sum_probs=58.6
Q ss_pred cceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecC
Q 031032 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 96 (167)
Q Consensus 17 ~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~ 96 (167)
.....+|.||.+ ++|+|||++|+|+|+|+++|||+|.|...... ...-.|.|++.
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g------------------~~~r~v~I~G~- 67 (92)
T 1x4n_A 13 SVMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSGG------------------LPERSCMLTGT- 67 (92)
T ss_dssp CCEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTT------------------CSEEEEEEEEC-
T ss_pred CCEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCCC------------------CCccEEEEEeC-
Confidence 456788999987 99999999999999999999999999875310 11227899986
Q ss_pred CcchHHHHHHHHHHHHHhccCC
Q 031032 97 PANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 97 ~~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
++ .+++|+++|+.++..
T Consensus 68 ~e-----~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 68 PE-----SVQSAKRLLDQIVEK 84 (92)
T ss_dssp HH-----HHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHh
Confidence 54 789999999998864
No 11
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=7.6e-12 Score=92.11 Aligned_cols=72 Identities=22% Similarity=0.417 Sum_probs=56.5
Q ss_pred cceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecC
Q 031032 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 96 (167)
Q Consensus 17 ~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~ 96 (167)
..++.+|.||.+ ++|+|||++|+|+|+|+++|||+|.|..... ...+-.|.|++.
T Consensus 9 ~~~~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~- 63 (106)
T 2hh3_A 9 IGGGIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP- 63 (106)
T ss_dssp ---CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-
T ss_pred CCeEEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-
Confidence 356788999997 9999999999999999999999999985431 011237889875
Q ss_pred CcchHHHHHHHHHHHHHhccCC
Q 031032 97 PANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 97 ~~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
++ .+++|+++|+.++..
T Consensus 64 ~e-----~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 64 PD-----RCEHAARIINDLLQS 80 (106)
T ss_dssp HH-----HHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHhc
Confidence 44 789999999998753
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=89.83 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
..+|.||.+ ++|+|||++|+|+|+|+++|||+|.|.....-.. ....-.|.|++ +.+
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~---------------~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPPNG---------------DPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTC---------------CTTEEEEEEES-CHH-
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCC---------------CCCceEEEEEC-CHH-
Confidence 578899986 9999999999999999999999999986531000 01123788888 554
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 031032 100 IVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~~~ 119 (167)
.+++|+++|+.++...
T Consensus 65 ----~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEGP 80 (107)
T ss_dssp ----HHHHHHHHHHHHSCSC
T ss_pred ----HHHHHHHHHHHHHhcc
Confidence 7899999999999854
No 13
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.18 E-value=7.1e-12 Score=86.24 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=57.6
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
....++.||.+ ++|.|||++|+++|+|+++|||+|.|.... . ...+=.|.|++. +
T Consensus 4 ~~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~---------------~~~~~~v~I~G~-~ 58 (76)
T 2p2r_A 4 TTSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANPV---E---------------GSTDRQVTITGS-A 58 (76)
T ss_dssp CEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCCC---T---------------TCSEEEEEEEEC-H
T ss_pred ceEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCCC---C---------------CCCeEEEEEEeC-H
Confidence 45678999986 999999999999999999999999998621 0 011228999986 5
Q ss_pred cchHHHHHHHHHHHHHhccCC
Q 031032 98 ANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+ .+++|+++|+.++..
T Consensus 59 ~-----~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 59 A-----SISLAQYLINVRLSS 74 (76)
T ss_dssp H-----HHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHHHHHc
Confidence 4 789999999999863
No 14
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=1.2e-11 Score=86.42 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=57.2
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
+...++.||.+ ++|.|||++|+++|+|+++|||+|.|.... +. ..+=.|.|++..
T Consensus 5 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~~---------------~~~r~v~I~G~~- 59 (82)
T 1wvn_A 5 QTTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV---EG---------------SSGRQVTITGSA- 59 (82)
T ss_dssp CEEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TT---------------CSEEEEEEEECH-
T ss_pred cEEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC---CC---------------CCceEEEEEcCH-
Confidence 35678899987 999999999999999999999999998631 00 112279999854
Q ss_pred cchHHHHHHHHHHHHHhccCC
Q 031032 98 ANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+ .+++|+++|+.++..
T Consensus 60 ~-----~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 60 A-----SISLAQYLINARLSS 75 (82)
T ss_dssp H-----HHHHHHHHHHHHTC-
T ss_pred H-----HHHHHHHHHHHHHHh
Confidence 4 789999999999874
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.17 E-value=1.9e-11 Score=85.39 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=56.3
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
....++.||.+ ++|+|||++|+++|+|+++|||+|.|...-. . ..+-.|.|++. +
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~---~---------------~~~~~v~I~G~-~ 60 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPLE---G---------------SEDRIITITGT-Q 60 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCTTS---C---------------SSEEEEEEEEC-H
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCCCC---C---------------CCceEEEEEeC-H
Confidence 45678899997 9999999999999999999999999975310 0 11227999984 5
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|+++|+.++.
T Consensus 61 ~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 61 D-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 78999999999875
No 16
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=1.6e-11 Score=88.13 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=56.3
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
+....+.||.+ ++|.||||+|+|+|+|+++|||+|.|...++ ..=.|.|++. .
T Consensus 16 ~~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~ 68 (94)
T 2cte_A 16 QASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-K 68 (94)
T ss_dssp CEEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-H
T ss_pred ceEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-H
Confidence 34678899987 9999999999999999999999999975331 0118999997 5
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|+++|+.++.
T Consensus 69 e-----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 69 E-----GIEKARHEVLLISA 83 (94)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHhh
Confidence 4 78999999999875
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.15 E-value=1.1e-11 Score=85.16 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=57.5
Q ss_pred cceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecC
Q 031032 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 96 (167)
Q Consensus 17 ~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~ 96 (167)
.+...++.||.+ ++|.|||++|+++|+|+++|||+|.|...|+. +=.|.|++.
T Consensus 3 ~~~~~~i~ip~~------~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~--------------------er~v~I~G~- 55 (73)
T 2axy_A 3 VTLTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGNCP--------------------ERIITLAGP- 55 (73)
T ss_dssp CCEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECSSCCS--------------------EEEEEEEEC-
T ss_pred ceEEEEEEEChh------HeeeEECCCCHHHHHHHHHHCCEEEEecCCCC--------------------cEEEEEEeC-
Confidence 346788999986 99999999999999999999999999876421 116899986
Q ss_pred CcchHHHHHHHHHHHHHhccC
Q 031032 97 PANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 97 ~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
++ .+.+|+++|..+|.
T Consensus 56 ~~-----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 56 TN-----AIFKAFAMIIDKLE 71 (73)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHh
Confidence 54 78999999998875
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=2.8e-11 Score=87.32 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=57.0
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
.....+.||.+ ++|+||||+|+|+|+|+++|||+|.|-..|+.. +=.|.|++. +
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~-------------------~~~V~I~G~-~ 69 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD-------------------PNCVTVTGL-P 69 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC-------------------TTEEEEESC-H
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCCC-------------------CcEEEEEcC-H
Confidence 34678899998 999999999999999999999999998776421 117999986 3
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|+++|+.|+.
T Consensus 70 e-----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 70 E-----NVEEAIDHILNLEE 84 (95)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 68889999988865
No 19
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=1.6e-11 Score=86.53 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=57.5
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
+...++.||.+ ++|+|||++|+|+++|+++|||+|.|...+..... ...=.|.|++. +
T Consensus 2 k~t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g---------------~~~r~v~I~G~-~ 59 (87)
T 1ec6_A 2 KELVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---------------TRNRRVTITGS-P 59 (87)
T ss_dssp CSEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT---------------SCEEEEEEESS-H
T ss_pred ceEEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC---------------CCceEEEEEcC-H
Confidence 34668899986 99999999999999999999999999875321111 11227889885 4
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 60 A-----ATQAAQYLISQRVT 74 (87)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 4 78999999999986
No 20
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=1.7e-11 Score=88.60 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=57.8
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCe-EEEecc-cCCCCCCcccccCCCCCCCCCCCCcEEEEEec
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR-VYIRGK-GSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 95 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~k-I~IrG~-GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~ 95 (167)
..+..+.||++ +||.+|||+|+|+|+|+++|||+ |.|... | .|.|++.
T Consensus 14 ~~i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG------------------------~V~I~g~ 63 (91)
T 2cpq_A 14 AFHEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELDEDTG------------------------TFRIYGE 63 (91)
T ss_dssp SEEEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEETTTT------------------------EEEEEES
T ss_pred ceEEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCC------------------------EEEEEEC
Confidence 35788999997 99999999999999999999998 999853 4 8999998
Q ss_pred CCcchHHHHHHHHHHHHHhccCC
Q 031032 96 LPANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 96 ~~~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+.+ .+++|+++|+.+-..
T Consensus 64 ~~e-----a~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 64 SAD-----AVKKARGFLEFVEDF 81 (91)
T ss_dssp SHH-----HHHHHHHHHSCCCCC
T ss_pred CHH-----HHHHHHHHHHhhheE
Confidence 876 789999999877554
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=5.8e-11 Score=85.89 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=56.6
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
...+|.||.+ ++|+||||+|+|+++|+++|||+|.|-..|... ...-.|.|++. .+
T Consensus 17 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~-----------------~~~~~V~I~G~-~e 72 (97)
T 2ctl_A 17 FKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN-----------------QPQDQITITGY-EK 72 (97)
T ss_dssp CEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS-----------------SCSSEEEEESC-HH
T ss_pred eeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC-----------------CCccEEEEEeC-HH
Confidence 4678899997 999999999999999999999999998766311 01127999986 44
Q ss_pred chHHHHHHHHHHHHHhccC
Q 031032 99 NIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL~ 117 (167)
.+++|+++|+.++.
T Consensus 73 -----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 -----NTEAARDAILRIVG 86 (97)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 68889999998875
No 22
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=9e-11 Score=82.92 Aligned_cols=67 Identities=22% Similarity=0.496 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
.....|.||.+ ++|.|||++|+|+|+||++|||+|.|-.++. ++ .|.|++..
T Consensus 9 ~~~~~i~VP~~------~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~--------------------~~-~v~ItG~~- 60 (83)
T 2dgr_A 9 QTTIQVRVPYR------VVGLVVGPKGATIKRIQQRTHTYIVTPGRDK--------------------EP-VFAVTGMP- 60 (83)
T ss_dssp SEEEEEECCHH------HHHHHHTTTTSSHHHHHHHTTCEEECCCSSS--------------------CC-EEEEEECT-
T ss_pred ceEEEEEeChH------HeeeeECCCchHHHHHHHHhCCeEEecCCCC--------------------CC-eEEEEcCH-
Confidence 45677888875 9999999999999999999999999974321 11 58888864
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|+++|+.++.
T Consensus 61 e-----~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 61 E-----NVDRAREEIEAHIT 75 (83)
T ss_dssp T-----THHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 4 58899999998754
No 23
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.08 E-value=3.4e-11 Score=85.39 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=56.4
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
....++.||.+ ++|+|||++|+|+|+|+++|||+|.|...-. . ..+=.|.|++. +
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~---~---------------~~~~~v~I~G~-~ 67 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPLE---G---------------SEDRIITITGT-Q 67 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSCCS---S---------------SSEEEEEEEEE-H
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCCCC---C---------------CCccEEEEEcC-H
Confidence 45678899986 9999999999999999999999999975210 0 11127899986 4
Q ss_pred cchHHHHHHHHHHHHHhccCC
Q 031032 98 ANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+ .+++|+++|+.++..
T Consensus 68 e-----~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 68 D-----QIQNAQYLLQNSVKQ 83 (89)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHh
Confidence 4 788999999998753
No 24
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.03 E-value=7.3e-11 Score=109.59 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=63.5
Q ss_pred CCCCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEE
Q 031032 11 SPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHI 90 (167)
Q Consensus 11 ~~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV 90 (167)
..-.+++|++..+.||++ +||.||||+|+|+|.|+++|||+|.|...| .|
T Consensus 559 ~~~~~~ap~~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G------------------------~V 608 (630)
T 3u1k_A 559 ASRKENGPVVETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQVDEE------------------------TF 608 (630)
T ss_dssp SSCCTTCCEEEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEECSSS------------------------EE
T ss_pred hhhcccCCeEEEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEcCCc------------------------EE
Confidence 345689999999999998 999999999999999999999999999877 89
Q ss_pred EEEecCCcchHHHHHHHHHHHHHhccC
Q 031032 91 LIEADLPANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 91 ~Isa~~~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
.|++.+.+ ++++|+++|+.|+.
T Consensus 609 ~I~~~~~~-----~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 609 SVFAPTPS-----AMHEARDFITEICK 630 (630)
T ss_dssp EEEESSHH-----HHHHHHHHTTC---
T ss_pred EEEeCCHH-----HHHHHHHHHHHHhC
Confidence 99998876 78999999998763
No 25
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.00 E-value=1e-10 Score=84.60 Aligned_cols=67 Identities=18% Similarity=0.367 Sum_probs=56.5
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHh-CCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eT-G~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
...|.||.+ +++.||||+|+++|+|+++| ||+|.|-..|+..+ .|.|.+.+.
T Consensus 18 t~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~--------------------~V~I~G~~~- 70 (95)
T 2ctj_A 18 EVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSD--------------------TVVIRGPSS- 70 (95)
T ss_dssp CEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCC--------------------EEEEESCHH-
T ss_pred EEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcc--------------------eEEEEcCHH-
Confidence 567889997 99999999999999999999 99999987774211 799988642
Q ss_pred chHHHHHHHHHHHHHhccCC
Q 031032 99 NIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL~~ 118 (167)
.+++|+++|+.|+..
T Consensus 71 -----~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 71 -----DVEKAKKQLLHLAEE 85 (95)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhh
Confidence 689999999998753
No 26
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.84 E-value=4.9e-09 Score=80.09 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=56.9
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
+.++.||.+ ++|+|||++|+|+|+|+++|||+|.|...+... ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~----------------~~~~r~v~I~G-~~~- 58 (164)
T 2jvz_A 3 VQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY- 58 (164)
T ss_dssp EEEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS----------------SSSCEEEEEEE-CHH-
T ss_pred EEEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCCC----------------CCCceEEEEEc-CHH-
Confidence 568899987 899999999999999999999999996543110 11223788888 444
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 031032 100 IVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~~~ 119 (167)
.+++|+.+|..++...
T Consensus 59 ----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 59 ----KVQQACEMVMDILRER 74 (164)
T ss_dssp ----HHHHHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 7899999999999864
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.83 E-value=2.1e-09 Score=82.48 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=58.5
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
....++.||.+ ++|+|||++|+++|+|+++|||+|.|...+. | ..++.-.|.|++ ++
T Consensus 84 ~~~~~i~vp~~------~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~~ 140 (163)
T 3krm_A 84 KLETHIRVPAS------AAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-HF 140 (163)
T ss_dssp CEEEEEEEETT------THHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-CH
T ss_pred ceEEEEEcChh------heeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-CH
Confidence 44568899986 9999999999999999999999999987652 1 122333789999 45
Q ss_pred cchHHHHHHHHHHHHHhccCC
Q 031032 98 ANIVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~~ 118 (167)
+ .+++|.++|+.++..
T Consensus 141 ~-----~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 141 Y-----ASQMAQRKIRDILAQ 156 (163)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHH
Confidence 4 789999999999864
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.81 E-value=6.9e-10 Score=104.49 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=18.6
Q ss_pred CCCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEE
Q 031032 12 PSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHIL 91 (167)
Q Consensus 12 ~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~ 91 (167)
--.+++|++..+.||++ +||.||||+|+|+|.|+++||++|.|...| .|.
T Consensus 563 ~~~~~ap~~~~~~i~~~------ki~~vig~gg~~i~~i~~~tg~~idi~ddG------------------------~v~ 612 (726)
T 4aid_A 563 DVGDFAPKIETINIPTD------KIREVIGSGGKVIREIVATTGAKVDINDDG------------------------VVK 612 (726)
T ss_dssp SCCSSCCC------------------------------------------------------------------------
T ss_pred hhcccCCeEEEEeCCHH------HHHhhcCCCchhHHHHHHHHCCceeEECCc------------------------eEE
Confidence 45689999999999998 999999999999999999999999999877 789
Q ss_pred EEecCCcchHHHHHHHHHHHHHhccCCCCc
Q 031032 92 IEADLPANIVDIRLRQAQEIIEELLKPVDE 121 (167)
Q Consensus 92 Isa~~~~~~a~~~l~~A~~~Ie~LL~~~~~ 121 (167)
|++.+.+ .+++|++.|+.|+..+..
T Consensus 613 I~~~~~~-----~~~~A~~~i~~i~~~~~v 637 (726)
T 4aid_A 613 VSASDGA-----KIKAAIDWIKSITDEAEV 637 (726)
T ss_dssp -CCSCHH-----HHHHHHHC----------
T ss_pred EEeCCHH-----HHHHHHHHHHHHhhhhcC
Confidence 9998866 889999999999976543
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.79 E-value=4.1e-09 Score=81.91 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=54.8
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
...++.||.+ ++|+|||++|+|+|+|+++|||+|.|........ ....=.|.|++ +.+
T Consensus 104 ~~~~i~vp~~------~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---------------~~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 104 QEFNFIVPTG------KTGLIIGKGGETIKSISQQSGARIELQRNPPPNA---------------DPNMKLFTIRG-TPQ 161 (174)
T ss_dssp CEEEEEEETT------THHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTS---------------CTTEEEEEEEC-CHH
T ss_pred EEEEEEEChH------HcCeeECCCchHHHHHHHHHCCEEEECCCCCCCC---------------CCCceEEEEEC-CHH
Confidence 4678889876 8999999999999999999999999986531100 01122688888 444
Q ss_pred chHHHHHHHHHHHHHhcc
Q 031032 99 NIVDIRLRQAQEIIEELL 116 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL 116 (167)
.+++|+++|+++|
T Consensus 162 -----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 -----QIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhC
Confidence 7899999999875
No 30
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=81.88 Aligned_cols=69 Identities=23% Similarity=0.434 Sum_probs=54.6
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
..++.||.+ ++|+|||++|+++|+|+++|||+|.|...... ..+=.|.|++. ++
T Consensus 92 ~~~i~vp~~------~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~------------------~~~~~v~I~G~-~~- 145 (164)
T 2jvz_A 92 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGT------------------GPEKIAHIMGP-PD- 145 (164)
T ss_dssp SBCCEEETT------THHHHHCSSSHHHHHHHHHTCCEEEECCCCTT------------------SSEEEEEEESC-HH-
T ss_pred eEEEEEChh------hccccCCCCcHhHHHHHHHHCCeEEEeCCCCC------------------CCcEEEEEEcC-HH-
Confidence 366778876 99999999999999999999999999864310 11227888885 44
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 031032 100 IVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~~ 118 (167)
.+++|.++|+.++..
T Consensus 146 ----~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 146 ----RCEHAARIINDLLQS 160 (164)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhh
Confidence 789999999998753
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=4.1e-09 Score=80.67 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=57.8
Q ss_pred cccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEe
Q 031032 15 YTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEA 94 (167)
Q Consensus 15 ~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa 94 (167)
...+...++.||.+ ++|+|||++|+++|+|+++|||+|.|.+... | ...+=.|.|++
T Consensus 85 ~~~~~~~~i~vp~~------~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~-------------~----~~~~~~v~I~G 141 (160)
T 2jzx_A 85 SRPPVTLRLVVPAS------QCGSLIGKGGCKIKEIRESTGAQVQVAGDML-------------P----NSTERAITIAG 141 (160)
T ss_dssp CCCSEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHSSEECCCCCCS-------------T----TCCEEEEEEEE
T ss_pred CCCCEEEEEEEChh------heeeEECCCCHHHHHHHHHhCCeEEECCCCC-------------C----CCCceEEEEEc
Confidence 34567888999975 9999999999999999999999999976320 1 01223789999
Q ss_pred cCCcchHHHHHHHHHHHHHhccC
Q 031032 95 DLPANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 95 ~~~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+++ .+++|+++|.+++.
T Consensus 142 -~~~-----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 142 -IPQ-----SIIECVKQICVVML 158 (160)
T ss_dssp -CHH-----HHHHHHHHHHHHHH
T ss_pred -CHH-----HHHHHHHHHHHHHh
Confidence 454 78899999988764
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=81.19 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=55.8
Q ss_pred ccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEec
Q 031032 16 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 95 (167)
Q Consensus 16 ~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~ 95 (167)
..+...++.||.+ ++|.|||++|+++|+|+++|||+|.|...|+ ..-.|.|++.
T Consensus 2 ~~~~~~~~~vp~~------~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~ 55 (160)
T 2jzx_A 2 NVTLTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP 55 (160)
T ss_dssp CCEEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE
T ss_pred CccEEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC
Confidence 4567889999987 9999999999999999999999999987542 1127888886
Q ss_pred CCcchHHHHHHHHHHHHHhccC
Q 031032 96 LPANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 96 ~~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
.+ .+.+|..+|.+++.
T Consensus 56 -~~-----~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 56 -TN-----AIFKAFAMIIDKLE 71 (160)
T ss_dssp -HH-----HHHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHHH
Confidence 33 67788888876653
No 33
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.72 E-value=3.8e-09 Score=86.65 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=57.7
Q ss_pred CcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEe-cccCCCCCCcccccCCCCCCCCCCCCcEEEE
Q 031032 14 SYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR-GKGSIKDPDKEDKLRGRPGYEHLNDPLHILI 92 (167)
Q Consensus 14 g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~Ir-G~GS~k~~~~~~~~~~~p~~~~~~epLHV~I 92 (167)
.++++++.++.||.+ .+|.||||+|+|++.|+++|||+|.|. ..| .|.|
T Consensus 29 s~~aP~i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g------------------------~V~I 78 (219)
T 2e3u_A 29 EEFFKQEEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSETG------------------------EVWI 78 (219)
T ss_dssp ----CCEEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTTTC------------------------EEEE
T ss_pred CCCCCEEEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcCCC------------------------EEEE
Confidence 489999999999997 999999999999999999999999998 433 6888
Q ss_pred EecC----CcchHHHHHHHHHHHHHhccC
Q 031032 93 EADL----PANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 93 sa~~----~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
.+.+ ++ .+++|+++|+.++.
T Consensus 79 ~~~~~t~d~~-----~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 79 TSTKETEDPL-----AVWKARDIVLAIGR 102 (219)
T ss_dssp EECTTCCSHH-----HHHHHHHHHHHHHT
T ss_pred ecCCCCCCHH-----HHHHHHHHHHHHhc
Confidence 8865 33 78999999999884
No 34
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.67 E-value=5.6e-09 Score=81.15 Aligned_cols=69 Identities=26% Similarity=0.469 Sum_probs=54.1
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
..++.||.+ ++|+|||++|+++|+|+++|||+|.|...- . ...+-.|.|++. .+
T Consensus 4 ~~~~~vp~~------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----~--------------~~~~r~v~I~G~-~~- 57 (174)
T 1j4w_A 4 MIDVPIPRF------AVGIVIGRNGEMIKKIQNDAGVRIQFKPDD----G--------------TTPERIAQITGP-PD- 57 (174)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEEECCT----T--------------SCSEEEEEEEEC-HH-
T ss_pred EEEEEEChh------heeeeecCCchHHHHHHHHhCCEEEEecCC----C--------------CCCccEEEEEeC-HH-
Confidence 467888886 999999999999999999999999997421 0 011227888886 33
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 031032 100 IVDIRLRQAQEIIEELLKP 118 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~~ 118 (167)
.+++|+++|..++..
T Consensus 58 ----~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 58 ----RAQHAAEIITDLLRS 72 (174)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHh
Confidence 688999999988864
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.65 E-value=6.5e-09 Score=80.94 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=56.9
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
....++.||.+ ++|+|||++|+++|+|+++|||+|.|.......+ ..+=.|.|++..
T Consensus 103 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~----------------~~~~~v~I~G~~- 159 (178)
T 2anr_A 103 ANQVKIIVPNS------TAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN----------------LQNRVVTVSGEP- 159 (178)
T ss_dssp GGEEEEEEEHH------HHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH-
T ss_pred ceEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC----------------CCceEEEEEcCH-
Confidence 35778999986 9999999999999999999999999986431100 111278888853
Q ss_pred cchHHHHHHHHHHHHHhccCCC
Q 031032 98 ANIVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~~~ 119 (167)
+ .+++|+++|..+|...
T Consensus 160 ~-----~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 160 E-----QNRKAVELIIQKIQED 176 (178)
T ss_dssp H-----HHHHHHHHHHHHHHSC
T ss_pred H-----HHHHHHHHHHHHHHhC
Confidence 3 7899999999988753
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.65 E-value=1.5e-08 Score=78.94 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=56.5
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
...++.||.+ ++|+|||++|+++|+|+++|||+|.|...+..... ...=.|.|++. .+
T Consensus 6 ~~~~i~vp~~------~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---------------~~er~v~I~G~-~~ 63 (178)
T 2anr_A 6 YFLKVLIPSY------AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---------------TTERVCLIQGT-IE 63 (178)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---------------SSEEEEEEEEC-HH
T ss_pred EEEEEEEChh------HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---------------CCCceEEEEeC-HH
Confidence 4678889986 99999999999999999999999999764311110 01115778885 33
Q ss_pred chHHHHHHHHHHHHHhccCCCC
Q 031032 99 NIVDIRLRQAQEIIEELLKPVD 120 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL~~~~ 120 (167)
.+.+|+++|..++...+
T Consensus 64 -----~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 64 -----ALNAVHGFIAEKIREMP 80 (178)
T ss_dssp -----HHHHHHHHHHHHHTCCC
T ss_pred -----HHHHHHHHHHHHHhccC
Confidence 68899999999887643
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.64 E-value=1.7e-08 Score=77.46 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=53.5
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
+...++.||.+ ++|.|||++|+++|+|+++|||+|.|...+.. ...+-.|.|++ ++
T Consensus 2 ~~~~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~-----------------~~~~r~v~I~G-~~ 57 (163)
T 3krm_A 2 QEMVQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP-----------------DSKVRMVIITG-PP 57 (163)
T ss_dssp CEEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST-----------------TCSEEEEEEEE-CH
T ss_pred ceEEEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC-----------------CCCceEEEEEc-CH
Confidence 35678899987 99999999999999999999999999875410 01122688888 44
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+.+|..+|..++.
T Consensus 58 e-----~v~~A~~~I~~~~~ 72 (163)
T 3krm_A 58 E-----AQFKAQGRIYGKLK 72 (163)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 4 56777777766554
No 38
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.30 E-value=8e-08 Score=90.48 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEE
Q 031032 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILI 92 (167)
Q Consensus 13 ~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~I 92 (167)
-.+++|++..+.||++ +|+.+|||+|+|++.|+++||++|.|.+.| .|+|
T Consensus 554 ~~~~ap~~~~~~i~~~------ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg------------------------~v~I 603 (723)
T 3cdi_A 554 ISEFAPRIHTIKINPD------KIKDVIGKGGSVIRALTEETGTTIEIEDDG------------------------TVKI 603 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEEEEEECHH------HhcccccccceeeeeeehhhCceEEecCCc------------------------cEEE
Confidence 3578999999999998 999999999999999999999999999877 6888
Q ss_pred EecCCcchHHHHHHHHHHHHHhccCCC
Q 031032 93 EADLPANIVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 93 sa~~~~~~a~~~l~~A~~~Ie~LL~~~ 119 (167)
++.+.+ .+++|.+.|+.++...
T Consensus 604 ~~~~~~-----~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 604 AATDGE-----KAKHAIRRIEEITAEI 625 (723)
T ss_dssp ---------------------------
T ss_pred ecCCHH-----HHHHHHHHHHHHhhhh
Confidence 887765 6778888888887543
No 39
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.29 E-value=4.1e-07 Score=73.27 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=45.2
Q ss_pred eeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHHh
Q 031032 35 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEE 114 (167)
Q Consensus 35 fiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie~ 114 (167)
.+|||||++|.|+|.||..|||+|.|.|+ .|.|.+. ++ .++.|...|+.
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~Ar~~i~~ 156 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIGD-YE-----RAMAAKQAIEM 156 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEEE-HH-----HHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEeC-hH-----HHHHHHHHHHH
Confidence 58999999999999999999999999863 5666664 33 67899999999
Q ss_pred ccCC
Q 031032 115 LLKP 118 (167)
Q Consensus 115 LL~~ 118 (167)
|+..
T Consensus 157 li~g 160 (191)
T 1tua_A 157 LAEG 160 (191)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9875
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.21 E-value=5.8e-07 Score=73.64 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=46.2
Q ss_pred eeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHHh
Q 031032 35 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEE 114 (167)
Q Consensus 35 fiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie~ 114 (167)
.+|||||++|+|+|.||..|||+|.|-++ .|.|.+. ++ .++.|...|+.
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-------------------------TVAIIGN-PI-----QIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-------------------------EEEEEEC-HH-----HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-------------------------EEEEEeC-HH-----HHHHHHHHHHH
Confidence 59999999999999999999999999752 6888884 33 68899999999
Q ss_pred ccCC
Q 031032 115 LLKP 118 (167)
Q Consensus 115 LL~~ 118 (167)
|+..
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9965
No 41
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.05 E-value=1.5e-07 Score=89.14 Aligned_cols=71 Identities=27% Similarity=0.480 Sum_probs=29.8
Q ss_pred CCCCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEE
Q 031032 11 SPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHI 90 (167)
Q Consensus 11 ~~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV 90 (167)
..-.+++|++..+.||++ +||.+|||+|+++|.|+++||++|.|.++| .|
T Consensus 590 ~~~~~~ap~~~~~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG------------------------~v 639 (757)
T 1e3p_A 590 DEMSPNAPRIITVKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDG------------------------TI 639 (757)
T ss_dssp CCCCTTSCBCCCC------------------------CTTCCCCCSCC--------------------------------
T ss_pred ccccccCceeEEEEEChH------HeehcccccceeeehhhHhhCCEEEecCCc------------------------eE
Confidence 445688999999999998 899999999999999999999999999876 67
Q ss_pred EEEecCCcchHHHHHHHHHHHHHhcc
Q 031032 91 LIEADLPANIVDIRLRQAQEIIEELL 116 (167)
Q Consensus 91 ~Isa~~~~~~a~~~l~~A~~~Ie~LL 116 (167)
+|++.+.+ ++++|.+.|+.|.
T Consensus 640 ~Is~~~~~-----~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 640 YIGAADGP-----AAEAARATINGIA 660 (757)
T ss_dssp CCCBSSHH-----HHCC---------
T ss_pred EEecCCHH-----HHHHHHHHHHHhc
Confidence 78877654 6677888888876
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.90 E-value=5.8e-06 Score=63.12 Aligned_cols=71 Identities=15% Similarity=0.356 Sum_probs=53.0
Q ss_pred EEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCC-eEEEecccCCCCCCcccccCCCCCCCCCCCCc-EEEEEecCCc
Q 031032 21 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGC-RVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPL-HILIEADLPA 98 (167)
Q Consensus 21 ~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~-kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epL-HV~Isa~~~~ 98 (167)
..+.||.+ .+|++||-+|.|+|.|++.||| +|.|........ ...+.+ -|.|++.- +
T Consensus 69 ~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--------------~~~~~~~~vtI~G~~-~ 127 (144)
T 2qnd_A 69 DVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--------------PQEEGMVPFVFVGTK-D 127 (144)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--------------CCCTTEEEEEEEEEH-H
T ss_pred EEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--------------cccCCeeEEEEEeCH-H
Confidence 56778876 8999999999999999999997 999997532110 011222 36788753 3
Q ss_pred chHHHHHHHHHHHHHhccC
Q 031032 99 NIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 99 ~~a~~~l~~A~~~Ie~LL~ 117 (167)
.++.|+++|+.+|.
T Consensus 128 -----~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 128 -----SIANATVLLDYHLN 141 (144)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 78999999998875
No 43
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.79 E-value=2.9e-05 Score=56.32 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=50.8
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHH-hCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEAT-TGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~e-TG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
...+|.||.+ |-+.|||++|.|+|+|+++ +++.|.+-.. ++ .|.|.+. .
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------------------~~-~ItI~G~-~ 76 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------------------ED-KITLEGP-T 76 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECSS----------------------SC-EEEEEEC-H
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------------------CC-EEEEECC-H
Confidence 4577889987 8899999999999999997 5888876631 00 6899886 3
Q ss_pred cchHHHHHHHHHHHHHhccC
Q 031032 98 ANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~~~a~~~l~~A~~~Ie~LL~ 117 (167)
+ .+++|.+.|+.++.
T Consensus 77 ~-----~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 77 E-----DVSVAQEQIEGMVK 91 (102)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 68889999988775
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.55 E-value=9.2e-05 Score=65.08 Aligned_cols=73 Identities=10% Similarity=0.123 Sum_probs=53.2
Q ss_pred ceEEEEecCCCCCCCCceeeEEeCCCc--chHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEec
Q 031032 18 KRILRLEIPVDTYPNFNFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 95 (167)
Q Consensus 18 ~~~~ki~IPv~~~P~~NfiG~IIGP~G--~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~ 95 (167)
..+.++.||.. |.+.|||.+| +++++|.++|||+|.+=..++.+... ....=-|.|+|.
T Consensus 29 ~VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~-------------~~ks~~VtItG~ 89 (376)
T 3n89_A 29 RVTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTP-------------DPFAQQVTITGY 89 (376)
T ss_dssp EEEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSC-------------CTTTTEEEEEEE
T ss_pred EEEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCC-------------cCCCCeEEEEcC
Confidence 34566777776 8899999999 99999999999999997643111000 000116999996
Q ss_pred CCcchHHHHHHHHHHHHHhc
Q 031032 96 LPANIVDIRLRQAQEIIEEL 115 (167)
Q Consensus 96 ~~~~~a~~~l~~A~~~Ie~L 115 (167)
- +.+++|.+.|..+
T Consensus 90 ~------enVE~AR~~I~~l 103 (376)
T 3n89_A 90 F------GDVDRARMLMRRN 103 (376)
T ss_dssp H------HHHHHHHHHHHHS
T ss_pred H------HHHHHHHHHHHhc
Confidence 3 3789999999986
No 45
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.25 E-value=0.00014 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=30.2
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEE
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 60 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~I 60 (167)
..+++.||.+ ++|.+||++|.++|+|++++| |.|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~i 37 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTA 37 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEE
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeE
Confidence 4678899987 999999999999999999999 544
No 46
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.68 E-value=0.00082 Score=53.91 Aligned_cols=70 Identities=16% Similarity=0.353 Sum_probs=50.3
Q ss_pred EEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc
Q 031032 20 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 99 (167)
Q Consensus 20 ~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~ 99 (167)
..++.||.+ -+|.|||..|.+++.|++.+||+|.|...- + -|.|.......
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~~-----~------------------~V~i~t~~~t~ 55 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTEN-----S------------------MVIVEPEAEGI 55 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETTT-----T------------------EEEEEESSTTS
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcCC-----C------------------eEEEEeCCCCC
Confidence 357889986 899999999999999999999999997421 0 45555321110
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 031032 100 IVDIRLRQAQEIIEELLKPV 119 (167)
Q Consensus 100 ~a~~~l~~A~~~Ie~LL~~~ 119 (167)
- -..+.+|.++|..+....
T Consensus 56 d-p~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 56 P-PVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp C-HHHHHHHHHHHHHHHHTC
T ss_pred C-HHHHHHHHHHHHHHHcCC
Confidence 0 127889999997765543
No 47
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.77 E-value=0.0078 Score=52.85 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.4
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCc--chHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecC
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 96 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G--~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~ 96 (167)
....+.|+.+ +...|||-+| .++++|.++|||+|..=..++..+.. ...-.|.|+|.
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~--------------~~~~~ItItGs- 244 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETR--------------GNIYEIKVVGN- 244 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEESC-
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccccc--------------CCceEEEEEeC-
Confidence 3445666665 7888999999 56699999999999987655322110 11126888873
Q ss_pred CcchHHHHHHHHHHHHHhcc
Q 031032 97 PANIVDIRLRQAQEIIEELL 116 (167)
Q Consensus 97 ~~~~a~~~l~~A~~~Ie~LL 116 (167)
. ..+.+|.+.|+.||
T Consensus 245 ~-----e~V~~Ark~I~~lL 259 (376)
T 3n89_A 245 I-----DNVLKARRYIMDLL 259 (376)
T ss_dssp H-----HHHHHHHHHHHHTS
T ss_pred H-----HHHHHHHHHHHhhC
Confidence 2 37899999999987
No 48
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=95.47 E-value=0.0092 Score=45.82 Aligned_cols=28 Identities=11% Similarity=0.314 Sum_probs=26.9
Q ss_pred ceeeEEeCCCcchHHHHHHHhCCeEEEe
Q 031032 34 NFVGRLLGPRGNSLKRVEATTGCRVYIR 61 (167)
Q Consensus 34 NfiG~IIGP~G~tiK~Iq~eTG~kI~Ir 61 (167)
..++.||||+|+.|+.||..|++.|.|.
T Consensus 65 ~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 65 RLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhcccCCCcCccchHHhhcceeEEEe
Confidence 3899999999999999999999999998
No 49
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=90.82 E-value=0.61 Score=37.73 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=51.4
Q ss_pred ceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 031032 34 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 113 (167)
Q Consensus 34 NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie 113 (167)
+++.+++||+|..+..|.+.++|+|.|=-.| .|+|.+.+.... ..+..|+..|+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG------------------------~IWi~~~~~~~~--~~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNG------------------------RIHLECPNEDLE--AIAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTT------------------------EEEEECSCHHHH--HHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCC------------------------EEEEecCCHHHH--HHHHHHHHHHH
Confidence 4888999999999999999999999996555 899998765432 36677888887
Q ss_pred hccCCCCcchHHHHH
Q 031032 114 ELLKPVDESQDYIKR 128 (167)
Q Consensus 114 ~LL~~~~~~~d~~k~ 128 (167)
.--. ..+-.|.+++
T Consensus 211 ~~~~-~~~l~~~v~~ 224 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIK 224 (235)
T ss_dssp HCSC-CTTCHHHHHH
T ss_pred hhhh-hhhHHHHHHH
Confidence 7554 4455565553
No 50
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=86.02 E-value=0.16 Score=38.80 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=26.9
Q ss_pred eeeEEeCCCcchHHHHHHHhCCeEEEecc
Q 031032 35 FVGRLLGPRGNSLKRVEATTGCRVYIRGK 63 (167)
Q Consensus 35 fiG~IIGP~G~tiK~Iq~eTG~kI~IrG~ 63 (167)
.+|..||++|+.+|.|+++.|-||.|-.-
T Consensus 46 ~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 46 EAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp CHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 59999999999999999999999988863
No 51
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=82.29 E-value=1.9 Score=34.77 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=49.8
Q ss_pred ceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 031032 34 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 113 (167)
Q Consensus 34 NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie 113 (167)
+++.+++||++..++.|.+.++|.|.|==.| .|+|.+.+. -...+..|+..|+
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG------------------------~IWi~~~~~---~~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNG------------------------LIWVNGDRR---KVSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECTTS------------------------EEEEESCHH---HHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEEECCc------------------------EEEEeCCch---hHHHHHHHHHHHH
Confidence 3677999999999999999999999995555 899986432 2345667777777
Q ss_pred hccCCCCcchHHHHHHHHHHHH
Q 031032 114 ELLKPVDESQDYIKRQQLRELA 135 (167)
Q Consensus 114 ~LL~~~~~~~d~~k~~QL~elA 135 (167)
.--. ...-.|.+| +-|.+.-
T Consensus 198 ~~~~-~~~l~~~v~-~~l~~~~ 217 (229)
T 2ba0_A 198 QEAH-TEGLTDRVA-EFIKRRK 217 (229)
T ss_dssp HCSC-CSSHHHHHH-HHHHHHH
T ss_pred hhhh-hhhHHHHHH-HHHHHhc
Confidence 5443 223334444 3355543
No 52
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=79.92 E-value=0.15 Score=42.05 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=35.8
Q ss_pred ceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 031032 34 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 113 (167)
Q Consensus 34 NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie 113 (167)
+++.++|||++..+..|.+.++|.|.|==.| .|+|.+.+..... .+..|+..|+
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG------------------------~IWi~~~~~~~~~--~~~~aI~~~e 217 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFVANNG------------------------RIWATCPSRFSEE--ILIEAIRKIE 217 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEECTTS------------------------EEEC-----CTTC--CTHHHHTTTT
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEECCc------------------------EEEEeCCCHHHHH--HHHHHHHHHH
Confidence 3778999999999999999999999996555 8999987754321 4556666665
Q ss_pred hc
Q 031032 114 EL 115 (167)
Q Consensus 114 ~L 115 (167)
.-
T Consensus 218 ~~ 219 (251)
T 2je6_I 218 NE 219 (251)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 53
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=72.56 E-value=0.83 Score=39.88 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCCCceeeEEeCCCcchHHHHHHHh-CCeEEEec
Q 031032 29 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 62 (167)
Q Consensus 29 ~~P~~NfiG~IIGP~G~tiK~Iq~eT-G~kI~IrG 62 (167)
..|+++-+|..||++|+.++.|.++. |=+|.|-.
T Consensus 244 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 244 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 35789999999999999999999999 99999986
No 54
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=71.84 E-value=0.81 Score=38.01 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCCCCceeeEEeCCCcchHHHH-HHHhCCeEEEecc
Q 031032 29 TYPNFNFVGRLLGPRGNSLKRV-EATTGCRVYIRGK 63 (167)
Q Consensus 29 ~~P~~NfiG~IIGP~G~tiK~I-q~eTG~kI~IrG~ 63 (167)
..|+++-+|..||++|+.++.| ++-.|=+|.|-.-
T Consensus 121 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 156 (251)
T 2asb_A 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY 156 (251)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEe
Confidence 3578999999999999999999 7778999999863
No 55
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=69.98 E-value=2.6 Score=35.46 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=43.2
Q ss_pred ceeeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 031032 34 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 113 (167)
Q Consensus 34 NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie 113 (167)
+++-|++||++..++.|.+.++|.|.|==.| .|+|.+.+... ...+..|+..++
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG------------------------~IWI~~~~~~~--~~~i~~aI~~~e 272 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNG------------------------RIWVKAKTIQQ--TLILANILEACE 272 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTT------------------------EEEECCSSHHH--HHHHHHHHHHTT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCc------------------------EEEEecCChhH--HHHHHHHHHHhh
Confidence 4778889999999999999999999887666 89998876542 235666666665
Q ss_pred hc
Q 031032 114 EL 115 (167)
Q Consensus 114 ~L 115 (167)
.+
T Consensus 273 ~~ 274 (289)
T 2nn6_G 273 HM 274 (289)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 56
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=67.09 E-value=2.8 Score=32.67 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=40.3
Q ss_pred ceeeEEeCCCcc-hHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHH-
Q 031032 34 NFVGRLLGPRGN-SLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEI- 111 (167)
Q Consensus 34 NfiG~IIGP~G~-tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~- 111 (167)
+++-|++|-+|+ .++.|.+.++|.|.|==.| .|+|.+.+... ...+..|+..
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG------------------------~IWi~~~~~~~--~~~v~~aI~~~ 153 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG------------------------KIWVKCEELSN--TLACYRTIMEC 153 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT------------------------EEEEECSSHHH--HHHHHHHHHHH
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEECCc------------------------EEEEecCCHHH--HHHHHHHHHHH
Confidence 377788885555 8999999999999987666 89999876542 2245566666
Q ss_pred HHh
Q 031032 112 IEE 114 (167)
Q Consensus 112 Ie~ 114 (167)
++.
T Consensus 154 ~~~ 156 (175)
T 2ja9_A 154 CQK 156 (175)
T ss_dssp HHH
T ss_pred hcc
Confidence 554
No 57
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=65.65 E-value=0.12 Score=39.69 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCCCCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEe
Q 031032 9 PASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 61 (167)
Q Consensus 9 p~~~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~Ir 61 (167)
||.--++++++..+..|+.+ ++|.+|||.|.++ |.+.|.
T Consensus 14 pp~~l~~~~p~~i~~~i~~~------~i~~vig~~G~~I--------~~~di~ 52 (171)
T 1y14_B 14 HPSFFGPRMKQYLKTKLLEE------VEGSCTGKFGYIL--------CVLDYD 52 (171)
T ss_dssp CTTSCSTTHHHHHHHHHHHH------HTTEEETTTEEEE--------EECCGG
T ss_pred CHHHhCChHHHHHHHHHHHH------HcCcCcCCceEEE--------EEEEec
Confidence 44455778888887888876 9999999999998 456666
No 58
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=62.80 E-value=2.6 Score=32.36 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=31.4
Q ss_pred cceEEEEecCCCCCCCCceeeEEeCCCcchHHHH-HHHh--------CC---eEEEecccC
Q 031032 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRV-EATT--------GC---RVYIRGKGS 65 (167)
Q Consensus 17 ~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~I-q~eT--------G~---kI~IrG~GS 65 (167)
......+.||++ ++|.+|| .+++++ +++| |+ .|.|...|.
T Consensus 5 ~~l~~~i~I~P~------~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~ 56 (187)
T 1go3_E 5 LEIADVVKVPPE------EFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGE 56 (187)
T ss_dssp EEEEEEEEECGG------GTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECC
T ss_pred EEEEEEEEECHH------HhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeeccC
Confidence 345678899997 7899998 799995 9999 87 677776543
No 59
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=59.94 E-value=2.8 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=30.3
Q ss_pred CCCCCceeeEEeCCCcchHHHHHHHh-CCeEEEec
Q 031032 29 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 62 (167)
Q Consensus 29 ~~P~~NfiG~IIGP~G~tiK~Iq~eT-G~kI~IrG 62 (167)
..|+++-+|..+|++|+.++.+.++. |-+|.|=.
T Consensus 240 ~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 240 NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 35789999999999999999999998 78888765
No 60
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=57.37 E-value=18 Score=30.60 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=37.9
Q ss_pred eeEEeCCCcc-----hHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHH
Q 031032 36 VGRLLGPRGN-----SLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQE 110 (167)
Q Consensus 36 iG~IIGP~G~-----tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~ 110 (167)
+-.|+|.... .+.++-+.-|+++.+.|+...+...+-+ ||.+.+++.+ .+..++..+.+
T Consensus 333 m~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~~rkmG---------------hv~~~~~~~~-~~~~~a~~~~~ 396 (403)
T 3k5i_A 333 MLNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKPGRKMG---------------HITVTAPTMH-EAETHIQPLID 396 (403)
T ss_dssp EEEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCTTCEEE---------------EEEEECSSHH-HHHHHHHHHHH
T ss_pred EEEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCCCCeeE---------------EEEEEcCCHH-HHHHHHHHHHh
Confidence 3446665433 2344445678999999986555544332 9999997654 44455555555
Q ss_pred HHH
Q 031032 111 IIE 113 (167)
Q Consensus 111 ~Ie 113 (167)
.++
T Consensus 397 ~~~ 399 (403)
T 3k5i_A 397 VVD 399 (403)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
No 61
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=54.09 E-value=1.8 Score=33.16 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=18.6
Q ss_pred eeeEEeCCCcchHHHHHHHhC
Q 031032 35 FVGRLLGPRGNSLKRVEATTG 55 (167)
Q Consensus 35 fiG~IIGP~G~tiK~Iq~eTG 55 (167)
-.|+|||-+|.|++.||--+.
T Consensus 43 d~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 43 DSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GGTTTTCGGGHHHHHHHHHHH
T ss_pred CcceEECCCCcchHHHHHHHH
Confidence 479999999999999998773
No 62
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=53.34 E-value=1.7 Score=33.09 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=31.4
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEe
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 61 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~Ir 61 (167)
+...+.+|.+ -.++.||.+|.+++-..+-||++|.|.
T Consensus 103 ~~~~V~V~~~------q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSED------DKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECTT------THHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEEChH------HhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 4456778876 467899999999999999999999886
No 63
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=49.45 E-value=56 Score=23.03 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=29.6
Q ss_pred chHHHHHHHh-CCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHHHhc
Q 031032 45 NSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEEL 115 (167)
Q Consensus 45 ~tiK~Iq~eT-G~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~Ie~L 115 (167)
.++..|+-.+ +..|.||-.| ...-++|++++.+.+ .++..++...+.|+.+
T Consensus 45 ~~idgl~~~~~~gwvlvRpSG-------------------TEP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSG-------------------TEDIVRVYAEANSQE-SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSS-------------------SSSSEEEEEEESSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCC-------------------CccEEEEEEEECCHH-HHHHHHHHHHHHHHHH
Confidence 4566666654 4578888765 234578999997643 3333444444444433
No 64
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=40.93 E-value=39 Score=24.12 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=29.0
Q ss_pred HhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc--hHHHHHHHHHHHHHhccC
Q 031032 53 TTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN--IVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 53 eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~--~a~~~l~~A~~~Ie~LL~ 117 (167)
..|.++.|+|+|--.... ....+|+|.+...-+.+ .. .+..+++++|+.
T Consensus 47 ~~G~~~rl~G~Gmp~~~~------------~~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~ 97 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPKY------------GGYGNLIIKFTIKFPENHFTS----EENLKKLEEILP 97 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSC
T ss_pred CCCcEEEECCCCCCCCCC------------CCCCCEEEEEEEECCCCCCCC----HHHHHHHHHHcc
Confidence 468889999988321100 03478899998877653 11 234566666664
No 65
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=39.53 E-value=0.87 Score=36.63 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCCCcccceEEEEecCCCCCCCCceeeEEeCCCcchH
Q 031032 10 ASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSL 47 (167)
Q Consensus 10 ~~~~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~ti 47 (167)
|.--++++++.....|+.+ ++|.+|||.|.++
T Consensus 15 p~~~~~~~p~~i~~~I~~~------~ig~vIg~~G~vI 46 (215)
T 2b8k_G 15 PSFFGPRMKQYLKTKLLEE------VEGSCTGKFGYIL 46 (215)
T ss_dssp GGGCSSSHHHHHHHHHHHS------STTCEETTTEEEE
T ss_pred HHHHChhHhHHHHhcCCHH------HCCeEcCCCCEEE
Confidence 3445677777777777776 9999999999887
No 66
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=37.61 E-value=21 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.2
Q ss_pred chHHHHHHHhCCeEEEeccc
Q 031032 45 NSLKRVEATTGCRVYIRGKG 64 (167)
Q Consensus 45 ~tiK~Iq~eTG~kI~IrG~G 64 (167)
..||+||++.|+++..|...
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHHHhCCceEeecCC
Confidence 36899999999999999743
No 67
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=37.39 E-value=42 Score=28.18 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=31.4
Q ss_pred eeEEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 36 VGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 36 iG~IIGP~G~tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
+-.|+|.. ...++-+.-++++.+.|| ..+...+-+ ||.+.+++.+
T Consensus 282 m~nilg~~--~~~~~~~~p~~~~~~ygk-~~r~~rkmG---------------hv~~~~~~~~ 326 (355)
T 3eth_A 282 MINLIGSD--VNYDWLKLPLVHLHWYDK-EVRPGRKVG---------------HLNLTDSDTS 326 (355)
T ss_dssp EEEEESCC--CCGGGGGSTTCEEEECCC-CCCTTCEEE---------------EEEEECSCHH
T ss_pred EEEEecch--HHHHHHhCCCCEEEEcCC-CCCCCCeeE---------------EEEEEcCCHH
Confidence 44566655 345666678999999999 666654433 9999997744
No 68
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=37.13 E-value=21 Score=27.51 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.8
Q ss_pred chHHHHHHHhCCeEEEecc
Q 031032 45 NSLKRVEATTGCRVYIRGK 63 (167)
Q Consensus 45 ~tiK~Iq~eTG~kI~IrG~ 63 (167)
..||+||++.|+++.+|..
T Consensus 43 ~~I~~LE~~lg~~Lf~R~~ 61 (310)
T 2esn_A 43 HALGRLRQGLDDELFLRQG 61 (310)
T ss_dssp HHHHHHHHHHTSCCEEEET
T ss_pred HHHHHHHHhhCCcceeecC
Confidence 3689999999999999974
No 69
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=33.52 E-value=13 Score=30.71 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=32.9
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEecc
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 63 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG~ 63 (167)
+...+.+|.+ -.++-||-+|.+++--.+-||++|.|.-.
T Consensus 184 ~~a~V~V~~~------qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDF------QLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGG------GHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChH------HhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3456677765 57899999999999999999999999853
No 70
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=32.18 E-value=18 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=32.5
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEec
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 62 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG 62 (167)
+...+.+|.+ -.++-||-+|.+++--.+-||++|.|.-
T Consensus 303 ~~~~v~v~~~------~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 303 KAARVLVPPT------QLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TEEEEEECTT------SHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CEEEEEEChH------HcchhhcCCCccHHHHHHHHCCEeceee
Confidence 3566777876 5789999999999999999999999973
No 71
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=31.44 E-value=61 Score=27.53 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=32.8
Q ss_pred HHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcchHHHHHHHHHHHH
Q 031032 47 LKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEII 112 (167)
Q Consensus 47 iK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~~a~~~l~~A~~~I 112 (167)
+.++-+.-|+++.+.|+...+...+-+ ||.+.+++.+ .+..++++|.+.|
T Consensus 365 ~~~~l~~p~~~~~~ygk~~~~~~rkmG---------------hv~~~~~~~~-~~~~~a~~~~~~l 414 (419)
T 4e4t_A 365 WDTVAAMPAAHLHLYGKEEARVGRKMG---------------HVNFTAEMRD-DAVAAATACAQLL 414 (419)
T ss_dssp HHHHHTSTTEEEEECCCSCCCTTCEEE---------------EEEEECSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCceE---------------EEEEEeCCHH-HHHHHHHHHHHhc
Confidence 566667789999999986555543322 9999997754 3444455555444
No 72
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=31.24 E-value=6.4 Score=31.98 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred eeeEEeCCCcchHHHHHHHhCC
Q 031032 35 FVGRLLGPRGNSLKRVEATTGC 56 (167)
Q Consensus 35 fiG~IIGP~G~tiK~Iq~eTG~ 56 (167)
-.|+|||.+|.|++.||--+..
T Consensus 102 d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 102 DMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHH
T ss_pred ccceeecCCCeEhHHHHHHHHH
Confidence 3789999999999999998873
No 73
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=30.75 E-value=15 Score=31.86 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=32.7
Q ss_pred eEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEec
Q 031032 19 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 62 (167)
Q Consensus 19 ~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG 62 (167)
+...+.+|.+ -.++.||-+|.+++-..+-||++|.|.-
T Consensus 307 ~~a~V~V~~~------qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 307 RAARVVVPDF------QLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TEEEEEECGG------GHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEEChH------HhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 3566777776 5789999999999999999999999984
No 74
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=30.02 E-value=18 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=29.8
Q ss_pred cceEEEEecCCCCCCCCceeeEEeCCCcchHHHHH--------HHhCCeEEEe
Q 031032 17 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE--------ATTGCRVYIR 61 (167)
Q Consensus 17 ~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq--------~eTG~kI~Ir 61 (167)
......|++.-+ .-.|-|||.+|..+|+|. +.+||+|.+.
T Consensus 238 ~~i~a~i~ve~~-----~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDRE-----NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSG-----GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccC-----CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 344566777766 356889999999999764 4578888876
No 75
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=27.63 E-value=17 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.800 Sum_probs=11.9
Q ss_pred HHHHhCCeEEEeccc
Q 031032 50 VEATTGCRVYIRGKG 64 (167)
Q Consensus 50 Iq~eTG~kI~IrG~G 64 (167)
|-..|||||+|+|+-
T Consensus 81 IasntgcKIRvqgd~ 95 (124)
T 2kie_A 81 IASNSGCKIRVQGDW 95 (124)
T ss_dssp GGGCSSEEEEEESSS
T ss_pred ccCCCCcEEEEeccc
Confidence 445689999999963
No 76
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=27.52 E-value=1.9 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcccceEEEEecCCCCCCCCceeeEEeCCCcchHHHHHHHhCCeEEEec--ccCCC
Q 031032 13 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG--KGSIK 67 (167)
Q Consensus 13 ~g~~~~~~~ki~IPv~~~P~~NfiG~IIGP~G~tiK~Iq~eTG~kI~IrG--~GS~k 67 (167)
-++++++..+..|+.+ ++|++||+.|.++ |.+.|.. .|..+
T Consensus 18 ~~~~~~~~i~~~l~~~------~~~~vi~~~G~~I--------~~~di~~i~~g~i~ 60 (172)
T 2c35_B 18 FGPNLLNTVKQKLFTE------VEGTCTGKYGFVI--------AVTTIDNIGAGVIQ 60 (172)
T ss_dssp CCSCHHHHHHHHHHHH------HTTCEETTTEEEE--------EEEEEEEECCCBCC
T ss_pred hCChHHHHHHHHHHHH------HcCcCcCCceEEE--------EEEEeeecCCeEEe
Confidence 4455555555555554 7899999999888 7777776 55444
No 77
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=27.24 E-value=37 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=36.2
Q ss_pred eeeEEeCCCcc-------h----H-HHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCcc-hH
Q 031032 35 FVGRLLGPRGN-------S----L-KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN-IV 101 (167)
Q Consensus 35 fiG~IIGP~G~-------t----i-K~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~~-~a 101 (167)
.+|+||||+|. | + +.|++.-..+|..|-+- ..-+|+-|--.+... ..
T Consensus 127 ~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~dk--------------------~g~i~~~IGk~~f~~e~L 186 (229)
T 3u42_A 127 KLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK--------------------TGAIHAPVGKASFPPEKL 186 (229)
T ss_dssp HHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECCT--------------------TSEEEEEEEETTSCHHHH
T ss_pred hhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeCC--------------------CCeecccccCCCCCHHHH
Confidence 58999999986 2 2 44444333478887431 234688887666542 23
Q ss_pred HHHHHHHHHHHHhcc
Q 031032 102 DIRLRQAQEIIEELL 116 (167)
Q Consensus 102 ~~~l~~A~~~Ie~LL 116 (167)
.+.+.+.++.|...+
T Consensus 187 ~eNi~a~i~~i~~~k 201 (229)
T 3u42_A 187 ADNIRAFIRALEAHK 201 (229)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 445555555555543
No 78
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=26.96 E-value=24 Score=26.96 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.1
Q ss_pred chHHHHHHHhCCeEEEeccc
Q 031032 45 NSLKRVEATTGCRVYIRGKG 64 (167)
Q Consensus 45 ~tiK~Iq~eTG~kI~IrG~G 64 (167)
..|++||++.|+++.+|...
T Consensus 36 ~~i~~LE~~lg~~Lf~R~~~ 55 (306)
T 3hhg_A 36 RIVKRLEEKLGVNLLNRTTR 55 (306)
T ss_dssp HHHHHHHHHHTSCCEETTSS
T ss_pred HHHHHHHHHhCCeeEeecCC
Confidence 35899999999999999643
No 79
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=26.11 E-value=1.6e+02 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.051 Sum_probs=15.5
Q ss_pred EEEEEecCCcchHHHHHHHHHHHHHhccC
Q 031032 89 HILIEADLPANIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 89 HV~Isa~~~~~~a~~~l~~A~~~Ie~LL~ 117 (167)
-|.|+|...++ .+..|++.|..+|.
T Consensus 155 KiviTGaks~~----~~~~a~~~i~~~L~ 179 (182)
T 1ais_A 155 KIVCSGAKSEA----DAWEAVRKLLRELD 179 (182)
T ss_dssp EEEEEEESSHH----HHHHHHHHHHHHHT
T ss_pred EEEEEecCCHH----HHHHHHHHHHHHHH
Confidence 67788875543 45566666666554
No 80
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=25.85 E-value=35 Score=26.29 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=17.2
Q ss_pred chHHHHHHHhCCeEEEeccc
Q 031032 45 NSLKRVEATTGCRVYIRGKG 64 (167)
Q Consensus 45 ~tiK~Iq~eTG~kI~IrG~G 64 (167)
..|++||++.|+++..|...
T Consensus 35 ~~i~~LE~~lg~~Lf~R~~r 54 (305)
T 3fxq_A 35 AAIQQLEDELKAPLLVRTKR 54 (305)
T ss_dssp HHHHHHHHHHTSCSEEECSS
T ss_pred HHHHHHHHHhCCeeEEecCC
Confidence 46899999999999999643
No 81
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=25.19 E-value=1.1e+02 Score=24.61 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=37.3
Q ss_pred eeeEEeCCCcc------------hHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc-chH
Q 031032 35 FVGRLLGPRGN------------SLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA-NIV 101 (167)
Q Consensus 35 fiG~IIGP~G~------------tiK~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~-~~a 101 (167)
-+|+++||+|. ..+.|++.-+.+|..|=+- ..-+||-|--.+.. ...
T Consensus 126 ~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k--------------------~~~i~v~VG~~~f~~e~L 185 (234)
T 2wwq_5 126 QLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDK--------------------NGIIHTTIGKVDFDADKL 185 (234)
T ss_dssp SSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSS--------------------SCEEEEEEEETTSCHHHH
T ss_pred HHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecC--------------------CcEEEEEEcCCCCCHHHH
Confidence 48999999965 3345555444456776211 12358888776544 233
Q ss_pred HHHHHHHHHHHHhcc
Q 031032 102 DIRLRQAQEIIEELL 116 (167)
Q Consensus 102 ~~~l~~A~~~Ie~LL 116 (167)
.+.+.++++.|..++
T Consensus 186 ~eNi~a~i~~l~~~~ 200 (234)
T 2wwq_5 186 KENLEALLVALKKAK 200 (234)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 456666676666655
No 82
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=24.65 E-value=33 Score=26.35 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.5
Q ss_pred chHHHHHHHhCCeEEEeccc
Q 031032 45 NSLKRVEATTGCRVYIRGKG 64 (167)
Q Consensus 45 ~tiK~Iq~eTG~kI~IrG~G 64 (167)
..|++||++.|+++..|++|
T Consensus 39 ~~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 39 QRIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHHhCCeeEEcCCC
Confidence 36899999999999999854
No 83
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=24.24 E-value=89 Score=25.32 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCCCceeeEEeCCCcch-----------H-HHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCC
Q 031032 30 YPNFNFVGRLLGPRGNS-----------L-KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 97 (167)
Q Consensus 30 ~P~~NfiG~IIGP~G~t-----------i-K~Iq~eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~ 97 (167)
.|.+.-+|+|+||+|.- + +.|++.-..+|..|-+- ..-+||-|--.+.
T Consensus 125 m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~k--------------------~~~i~v~VG~~~m 184 (242)
T 3qoy_A 125 MPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDK--------------------AGNVHMPVGKISF 184 (242)
T ss_dssp HHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECCT--------------------TSEEEEEEEETTS
T ss_pred HHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEecC--------------------CcEEEEEecCCCC
Confidence 33344578999999652 3 44444433367777421 1235888876654
Q ss_pred c-chHHHHHHHHHHHHHhccC
Q 031032 98 A-NIVDIRLRQAQEIIEELLK 117 (167)
Q Consensus 98 ~-~~a~~~l~~A~~~Ie~LL~ 117 (167)
. ....+.+..+++.|..++-
T Consensus 185 ~~e~L~eNi~a~i~~l~~~~p 205 (242)
T 3qoy_A 185 EKEKLIDNLYAAIDAVVRAKP 205 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 4 3345567777777777663
No 84
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.87 E-value=95 Score=22.66 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=16.3
Q ss_pred hHHHHHHHhCCeEEEecc
Q 031032 46 SLKRVEATTGCRVYIRGK 63 (167)
Q Consensus 46 tiK~Iq~eTG~kI~IrG~ 63 (167)
.|++||++.|+++..|..
T Consensus 58 ~I~~LE~~lG~~Lf~R~~ 75 (135)
T 2ijl_A 58 LVDALNHMFRQPVICSQR 75 (135)
T ss_dssp HHHHHHHHBSSCSEEECC
T ss_pred HHHHHHHHHCCeeEEecC
Confidence 578999999999999985
No 85
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=21.30 E-value=1.5e+02 Score=20.61 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=22.1
Q ss_pred HhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCcEEEEEecCCc
Q 031032 53 TTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 98 (167)
Q Consensus 53 eTG~kI~IrG~GS~k~~~~~~~~~~~p~~~~~~epLHV~Isa~~~~ 98 (167)
..|.++.|+|+|--. . ....+|+|.|...-+.
T Consensus 49 ~~G~~~rl~G~G~p~-~-------------~~~GDL~v~~~V~~P~ 80 (109)
T 3i38_A 49 QAGQRLRIKGKGLVS-K-------------THTGDLFAVIKIVMPT 80 (109)
T ss_dssp CTTCEEEETTCSCBC-S-------------SCBCCEEEEEEECCCS
T ss_pred CcCeEEEECCccCCC-C-------------CCCcCEEEEEEEECCC
Confidence 568888999888321 0 1356789999887665
No 86
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=20.01 E-value=1.1e+02 Score=23.18 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=17.0
Q ss_pred CCCcEEEEEecCCcchHHHHHHHHHHHHHhcc
Q 031032 85 NDPLHILIEADLPANIVDIRLRQAQEIIEELL 116 (167)
Q Consensus 85 ~epLHV~Isa~~~~~~a~~~l~~A~~~Ie~LL 116 (167)
..+|+|.+...-+.+.- ++..+++++|+
T Consensus 152 ~GDL~V~~~V~~P~~Ls----~~q~~~l~~~~ 179 (180)
T 2q2g_A 152 KGDLILEFDICFPKSLT----PEQKKLIKEAL 179 (180)
T ss_dssp BCCEEEEEEEECCSCCC----HHHHHHHHHHC
T ss_pred cCCEEEEEEEECCCCCC----HHHHHHHHHhc
Confidence 47899999888765321 23345555544
Done!