Query 031033
Match_columns 167
No_of_seqs 31 out of 33
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8c_D Glucose-repressible alc 93.1 0.028 9.5E-07 50.6 1.4 10 8-17 9-18 (727)
2 1ykh_B RNA polymerase II holoe 90.2 1.2 4.1E-05 33.7 7.4 43 106-152 60-102 (132)
3 1yke_B RNA polymerase II holoe 90.1 1.1 3.9E-05 34.7 7.4 43 106-152 60-102 (151)
4 4abx_A DNA repair protein RECN 59.6 54 0.0018 24.7 8.9 84 75-162 57-142 (175)
5 1dn1_B Syntaxin 1A, syntaxin b 57.4 35 0.0012 27.5 7.2 61 104-165 74-138 (267)
6 1wrd_A TOM1, target of MYB pro 57.3 50 0.0017 23.6 7.8 72 86-165 22-93 (103)
7 3uul_A Utrophin; spectrin repe 52.1 48 0.0016 21.8 6.5 20 137-156 38-57 (118)
8 2kmf_A Photosystem II 11 kDa p 51.6 35 0.0012 25.7 5.8 48 86-133 21-87 (115)
9 4fla_A Regulation of nuclear P 51.1 21 0.00073 27.5 4.7 22 109-130 70-91 (152)
10 3uun_A Dystrophin; triple heli 47.0 58 0.002 21.3 6.7 18 138-155 39-56 (119)
11 1fio_A SSO1 protein; four heli 43.2 85 0.0029 23.2 6.8 26 105-130 51-76 (196)
12 1tqg_A Chemotaxis protein CHEA 42.4 75 0.0026 21.3 5.9 39 87-126 65-103 (105)
13 2lch_A Protein OR38; structura 38.0 96 0.0033 21.3 6.0 43 85-128 64-106 (113)
14 4hpq_C ATG17, KLTH0D15642P; au 37.8 56 0.0019 29.0 5.8 18 107-124 208-225 (413)
15 1ykh_A RNA polymerase II media 36.8 1.3E+02 0.0044 22.4 8.8 54 104-166 46-100 (108)
16 1oxz_A ADP-ribosylation factor 36.7 1.6E+02 0.0054 23.4 8.3 73 86-165 85-158 (186)
17 2y6x_A PSB27, photosystem II 1 36.1 1.3E+02 0.0045 22.5 6.8 49 86-134 17-84 (113)
18 1wr6_A ADP-ribosylation factor 35.6 99 0.0034 22.6 6.0 68 90-164 21-88 (111)
19 4ani_A Protein GRPE; chaperone 34.8 73 0.0025 25.9 5.6 43 84-126 114-156 (213)
20 1mfq_C SRP54, signal recogniti 34.6 31 0.001 26.4 3.2 21 109-129 105-125 (129)
21 1x79_B RAB GTPase binding effe 34.3 30 0.001 26.1 3.0 62 90-153 30-91 (112)
22 1naf_A ADP-ribosylation factor 34.0 1.4E+02 0.0046 23.3 6.9 73 86-165 69-142 (158)
23 4fla_A Regulation of nuclear P 33.3 67 0.0023 24.7 5.0 47 107-153 86-132 (152)
24 1ez3_A Syntaxin-1A; three heli 32.7 1.2E+02 0.0042 20.9 7.1 25 105-129 52-76 (127)
25 3itf_A Periplasmic adaptor pro 32.2 1.3E+02 0.0044 22.9 6.3 57 89-153 73-137 (145)
26 1z8u_A Alpha-hemoglobin stabil 31.8 58 0.002 24.5 4.2 29 136-164 59-88 (102)
27 3a6m_A Protein GRPE, HSP-70 co 31.4 83 0.0028 24.6 5.3 40 84-125 74-113 (177)
28 1dul_A Signal recognition part 31.3 33 0.0011 23.5 2.6 17 109-125 52-68 (69)
29 3mov_A Lamin-B1; LMNB1, B-type 31.2 1.3E+02 0.0046 21.3 6.0 23 142-164 62-87 (95)
30 3nmd_A CGMP dependent protein 31.0 47 0.0016 23.4 3.4 23 143-165 41-63 (72)
31 1gax_A Valrs, valyl-tRNA synth 30.7 95 0.0032 29.4 6.4 59 103-161 796-861 (862)
32 2xv5_A Lamin-A/C; structural p 30.1 1.1E+02 0.0037 21.1 5.2 23 142-164 30-55 (74)
33 3htk_A Structural maintenance 29.6 75 0.0026 19.9 4.0 19 140-158 31-49 (60)
34 1hq1_A Signal recognition part 29.0 28 0.00096 25.5 2.1 19 109-127 86-104 (105)
35 1qb3_A Cyclin-dependent kinase 28.8 12 0.00041 29.8 0.1 6 73-78 131-136 (150)
36 3kuj_A Polyadenylate-binding p 28.8 1.4E+02 0.0046 21.4 5.6 54 72-127 17-80 (88)
37 2jqe_A SRP54, signal recogniti 28.2 25 0.00084 26.4 1.7 31 96-128 84-114 (119)
38 3gwk_C SAG1039, putative uncha 27.6 74 0.0025 20.8 3.8 46 85-131 34-79 (98)
39 2yru_A Steroid receptor RNA ac 27.6 32 0.0011 25.5 2.2 46 85-130 61-106 (118)
40 2xxa_A Signal recognition part 26.4 35 0.0012 29.4 2.5 33 94-128 400-432 (433)
41 1c94_A Retro-GCN4 leucine zipp 26.2 8.5 0.00029 24.4 -1.0 18 105-122 21-38 (38)
42 1vcs_A Vesicle transport throu 26.1 1.7E+02 0.0059 20.5 8.6 53 100-153 32-85 (102)
43 3cqx_C BAG family molecular ch 25.7 1.5E+02 0.005 21.7 5.4 60 86-153 9-79 (88)
44 1o3x_A ADP-ribosylation factor 25.6 2.2E+02 0.0074 21.5 8.6 73 86-165 60-133 (140)
45 4aj5_A SKA1, spindle and kinet 24.3 96 0.0033 22.8 4.2 12 108-119 48-59 (91)
46 2xhe_B Syntaxin1; exocytosis, 24.1 2.4E+02 0.0081 22.4 6.9 25 105-129 90-114 (279)
47 3efg_A Protein SLYX homolog; x 23.9 1.8E+02 0.0062 20.0 5.7 46 101-153 8-53 (78)
48 3jui_A Translation initiation 23.4 2.5E+02 0.0085 21.4 7.9 68 88-161 18-96 (182)
49 2dvk_A UPF0130 protein APE0816 22.5 27 0.00091 28.0 0.9 26 88-113 4-29 (188)
50 3tnu_A Keratin, type I cytoske 22.4 83 0.0028 22.9 3.6 23 142-164 102-127 (131)
51 3at7_A Alginate-binding flagel 22.2 3.2E+02 0.011 22.3 7.5 22 106-127 213-234 (283)
52 3m0d_C TNF receptor-associated 22.1 1.1E+02 0.0036 20.2 3.8 32 107-138 6-37 (65)
53 2nz7_A NOD1, caspase recruitme 22.1 72 0.0025 22.7 3.1 46 79-127 22-68 (98)
54 1am9_A Srebp-1A, protein (ster 22.1 1.9E+02 0.0065 19.6 5.2 54 110-164 19-79 (82)
55 4hpq_C ATG17, KLTH0D15642P; au 21.9 1E+02 0.0035 27.3 4.7 27 105-131 247-273 (413)
56 3tnu_B Keratin, type II cytosk 21.7 89 0.003 22.7 3.6 23 142-164 100-125 (129)
57 3thf_A Protein shroom; coiled- 21.6 2.1E+02 0.0071 23.4 6.1 53 102-164 115-167 (190)
58 1i5n_A Chemotaxis protein CHEA 21.5 2.4E+02 0.0081 20.5 7.1 44 85-129 65-108 (146)
59 1m1j_B Fibrinogen beta chain; 20.7 1.6E+02 0.0055 26.6 5.7 17 108-124 143-159 (464)
60 1gk6_A Vimentin; intermediate 20.7 1.1E+02 0.0038 19.8 3.6 23 142-164 25-50 (59)
61 2ooc_A Histidine phosphotransf 20.2 2E+02 0.0067 20.1 5.1 37 88-126 70-106 (113)
62 1zxa_A CGMP-dependent protein 20.1 46 0.0016 23.1 1.6 19 106-124 38-56 (67)
No 1
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.12 E-value=0.028 Score=50.59 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=0.0
Q ss_pred CcceecCCCC
Q 031033 8 GSWNMMPSIP 17 (167)
Q Consensus 8 GSw~miP~~p 17 (167)
.+..|+|..+
T Consensus 9 ~~~~~~~~~~ 18 (727)
T 4b8c_D 9 NSIGMVPTVG 18 (727)
T ss_dssp ----------
T ss_pred cccCCCcccC
Confidence 3455666333
No 2
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=90.21 E-value=1.2 Score=33.65 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033 106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN 152 (167)
Q Consensus 106 DaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~ 152 (167)
+.+.+-|..++.....||.++||+ ..|+|.|-+.|.++++.+.
T Consensus 60 ~ela~dli~k~kqIe~LIdsLP~~----~~see~Q~~ri~~L~~E~~ 102 (132)
T 1ykh_B 60 DELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV 102 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTT----TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 345555667788889999999999 4699999999887765543
No 3
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=90.13 E-value=1.1 Score=34.71 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033 106 DALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN 152 (167)
Q Consensus 106 DaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~ 152 (167)
+.+.+.|..++....-||.++||+ ..|+|.|-+.|.++++.+.
T Consensus 60 ~ela~dli~kakqIe~LIdsLPg~----~~seeeQ~~ri~~Le~E~~ 102 (151)
T 1yke_B 60 DELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV 102 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTS----SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 445566677788899999999999 4699999999887765543
No 4
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=59.57 E-value=54 Score=24.67 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=47.9
Q ss_pred HHHhhhhh-hhHHHHHHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHH
Q 031033 75 HHQSLASN-FHLLHLMENLADAIENG-TRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLN 152 (167)
Q Consensus 75 ~hqsLash-fhllpLVe~Lad~ie~g-trDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~ 152 (167)
.+..|..- ...+.++......+++- .-|.....+.+.|.+-...+.-+...+..-++.-..+|+ .|++.++.|.
T Consensus 57 a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~----rL~~ie~RL~ 132 (175)
T 4abx_A 57 GVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE----ALDRVEARLS 132 (175)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH----HHHHHHHHHH
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHH
Confidence 34444322 35666666665555542 345444444444444444444444444433333345664 5999999999
Q ss_pred HHHHHHHHHH
Q 031033 153 QRKSVMLMLR 162 (167)
Q Consensus 153 qRreLl~KYK 162 (167)
.=+.|-.||.
T Consensus 133 ~l~~L~RKyg 142 (175)
T 4abx_A 133 ALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 9999999997
No 5
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=57.41 E-value=35 Score=27.53 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccc----cccCHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 031033 104 QSDALVNELNNHFEKCQQLLSSISESLDT----KAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFC 165 (167)
Q Consensus 104 ~sDaLvnEL~skFqkcqQLLnSisgsi~~----k~~tvE~Qkq~Lee~rqql~qRreLl~KYKslC 165 (167)
..+.++++++..|.+|+..|.+|...+.. ..-+.+.--++.. ..-+.+.=.++|.+|+..+
T Consensus 74 ~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q-~~~L~~~f~~~m~~yq~~Q 138 (267)
T 1dn1_B 74 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ-HSTLSRKFVEVMSEYNATQ 138 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999999999754321 1223443222221 3334444456666666543
No 6
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=57.32 E-value=50 Score=23.62 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 031033 86 LHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVFC 165 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKslC 165 (167)
+-|...+.+....|.++.--++++.||.+.-.++|.-|-.|-... +-|. -|.++=+.=+.=..+|.||+.++
T Consensus 22 ~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~-----~dee---~l~~lL~~ND~L~~vl~ry~~~~ 93 (103)
T 1wrd_A 22 VRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQI-----ANEQ---LTEELLIVNDNLNNVFLRHERFE 93 (103)
T ss_dssp HHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhcc-----CCHH---HHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455555565666666667899999888888887776665542 3332 23333333344456788888764
No 7
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=52.06 E-value=48 Score=21.84 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=7.9
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 031033 137 VEGQRRKLEESEQLLNQRKS 156 (167)
Q Consensus 137 vE~Qkq~Lee~rqql~qRre 156 (167)
++.|..+.+.++.-|..++.
T Consensus 38 v~~~l~~h~~l~~ei~~~~~ 57 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQS 57 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333
No 8
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=51.59 E-value=35 Score=25.68 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHH-------------------HHHHHHHHHhhhhcccccc
Q 031033 86 LHLMENLADAIENGTRDQQSDALVNELNN-------------------HFEKCQQLLSSISESLDTK 133 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~sDaLvnEL~s-------------------kFqkcqQLLnSisgsi~~k 133 (167)
+-+|+.|..+|+-+--|.+..+.+.+++. -|..|+..||+++|-.++.
T Consensus 21 ~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~ 87 (115)
T 2kmf_A 21 LTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSY 87 (115)
T ss_dssp HHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence 46899999999987777777766666542 3778999999999865543
No 9
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=51.08 E-value=21 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 031033 109 VNELNNHFEKCQQLLSSISESL 130 (167)
Q Consensus 109 vnEL~skFqkcqQLLnSisgsi 130 (167)
.++|...|++|..+|+..-|.+
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL 91 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777665
No 10
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=47.04 E-value=58 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=6.8
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 031033 138 EGQRRKLEESEQLLNQRK 155 (167)
Q Consensus 138 E~Qkq~Lee~rqql~qRr 155 (167)
+.+..+.+.++..|..++
T Consensus 39 ~~~l~~h~~l~~ei~~~~ 56 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQ 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 333333333333333333
No 11
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=43.15 E-value=85 Score=23.22 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccc
Q 031033 105 SDALVNELNNHFEKCQQLLSSISESL 130 (167)
Q Consensus 105 sDaLvnEL~skFqkcqQLLnSisgsi 130 (167)
.+.++.+.+..|.+|...|..|....
T Consensus 51 i~~l~~~i~~~~~~~~~~lk~l~~~~ 76 (196)
T 1fio_A 51 LDNFVAQATDLQFKLKNEIKSAQRDG 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888889999999999998663
No 12
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=42.39 E-value=75 Score=21.33 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhh
Q 031033 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSI 126 (167)
Q Consensus 87 pLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSi 126 (167)
+-+|++.+.+..|.... ...+++.|..-++..+.+|..+
T Consensus 65 ~~lE~~l~~~r~~~~~~-~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 65 HTLENILDKARNSEIKI-TSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHTTSSCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666665665444 3678899988899998888765
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=37.99 E-value=96 Score=21.27 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhc
Q 031033 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISE 128 (167)
Q Consensus 85 llpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisg 128 (167)
+-|-+|++.+.+..|..... .++++.|..-++..+.+|..+..
T Consensus 64 lah~~E~~l~~~r~~~~~~~-~~l~~~l~~~~d~l~~~l~~~~~ 106 (113)
T 2lch_A 64 VLHTIMNLVDKMLNSEIKIT-SDLIDKVKKKLDMVTRELDKKVS 106 (113)
T ss_dssp HHHHHHHHHHHHTSTTTCCC-HHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44667777777777766555 67899999999999999988863
No 14
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=37.79 E-value=56 Score=28.97 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031033 107 ALVNELNNHFEKCQQLLS 124 (167)
Q Consensus 107 aLvnEL~skFqkcqQLLn 124 (167)
++++-|++||++|.++.+
T Consensus 208 ~~L~SLT~HyDqC~~l~~ 225 (413)
T 4hpq_C 208 DFLKSFTDHFDKCSALSS 225 (413)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 567889999999997774
No 15
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=36.81 E-value=1.3e+02 Score=22.36 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhH-HHHHHHHHHHHHHHHHHHhhhc
Q 031033 104 QSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKL-EESEQLLNQRKSVMLMLRVFCF 166 (167)
Q Consensus 104 ~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~L-ee~rqql~qRreLl~KYKslC~ 166 (167)
+.+..|..|+.=|--+-.|||.+- |-+=+-.| .-+|.+++.||+.++.-+..|-
T Consensus 46 ~~~~kv~di~~lfiNmHhLlNeyR---------PhQARetL~~~le~Qi~~kr~e~~~i~~~~~ 100 (108)
T 1ykh_A 46 MYERKVENIRTILVNIHHLLNEYR---------PHQSRESLIMLLEEQLEYKRGEIREIEQVCK 100 (108)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999754 22223333 3478899999999998888873
No 16
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=36.73 E-value=1.6e+02 Score=23.40 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 86 LHLMENLADAIENGTRDQQ-SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~-sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
+-|...+...+..|..+.- -++++.||.+.-.+||.-|-.|.+..+ .-|+- |.++=+.=+.=+.+|.||+.+
T Consensus 85 v~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~----ddee~---L~elL~~ND~Ln~vl~kY~~~ 157 (186)
T 1oxz_A 85 VKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTE----DNDEA---LAEILQANDNLTQVINLYKQL 157 (186)
T ss_dssp HHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCC----SCHHH---HHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHcc----CCHHH---HHHHHHhhHHHHHHHHHHHHH
Confidence 3444555555555666554 578999999999999988888876521 22222 444444555566789999876
Q ss_pred h
Q 031033 165 C 165 (167)
Q Consensus 165 C 165 (167)
+
T Consensus 158 ~ 158 (186)
T 1oxz_A 158 V 158 (186)
T ss_dssp H
T ss_pred h
Confidence 4
No 17
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=36.08 E-value=1.3e+02 Score=22.46 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHH-------------------HHHHHHHHHhhhhccccccc
Q 031033 86 LHLMENLADAIENGTRDQQSDALVNELNN-------------------HFEKCQQLLSSISESLDTKA 134 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~sDaLvnEL~s-------------------kFqkcqQLLnSisgsi~~k~ 134 (167)
+-+|+.|..+|+-+.-|.+..+.+.+++. -|..|+..||+++|-.++.+
T Consensus 17 ~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g 84 (113)
T 2y6x_A 17 LALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYP 84 (113)
T ss_dssp HHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcC
Confidence 46899999999988777777666665542 37889999999998665443
No 18
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=35.61 E-value=99 Score=22.58 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 90 ENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 90 e~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
..+...+..|..+..-++++.||-+.-.+||-.|-.|.+..+. -|+- |.++=+.=+.=+.+|.||+.+
T Consensus 21 ~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~d----dde~---l~elL~~ND~ln~vi~rY~~~ 88 (111)
T 1wr6_A 21 SEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETED----NDNS---LGDILQASDNLSRVINSYKTI 88 (111)
T ss_dssp HHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT----TCSS---HHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc----CHHH---HHHHHHHhHHHHHHHHHHHHH
Confidence 3333334455555555679999999999999888888765321 1111 233333334445688899865
No 19
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=34.79 E-value=73 Score=25.93 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhh
Q 031033 84 HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSI 126 (167)
Q Consensus 84 hllpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSi 126 (167)
.|||+++||-.|++....+...++|+.-+..=+.+...+|...
T Consensus 114 ~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~k~ 156 (213)
T 4ani_A 114 DLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 5999999999999876555555566655555555555556543
No 20
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=34.58 E-value=31 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 031033 109 VNELNNHFEKCQQLLSSISES 129 (167)
Q Consensus 109 vnEL~skFqkcqQLLnSisgs 129 (167)
||+|-.+|+.+++....|.|+
T Consensus 105 Vn~LLkqf~qm~kmmKkm~~~ 125 (129)
T 1mfq_C 105 VQELLTQYTKFAQMVKKMGGI 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 799999999999999988764
No 21
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.33 E-value=30 Score=26.08 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHH
Q 031033 90 ENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQ 153 (167)
Q Consensus 90 e~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~q 153 (167)
.+|-+++...+.|.... |-+|+.+.+..+++|..+-+..+----.|..|-.+|-..|+.|..
T Consensus 30 ~~Le~~w~~k~E~~k~q--V~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~ 91 (112)
T 1x79_B 30 QELEDFIKQSSEDSSHQ--ISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766 999999999999999999888654445788888999999988854
No 22
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=33.95 E-value=1.4e+02 Score=23.26 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 86 LHLMENLADAIENGTRDQQ-SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~-sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
+-|...+......|..+.- -++++.||.+.-.++|.-|-.|.+..+ .-|+- |.++=+.=+.=+.+|.||+.+
T Consensus 69 v~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~----ddee~---L~elL~~ND~Ln~vl~kY~~~ 141 (158)
T 1naf_A 69 VKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTE----DNDEA---LAEILQANDNLTQVINLYKQL 141 (158)
T ss_dssp HHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCC----SCHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHcc----CCHHH---HHHHHHhhHHHHHHHHHHHHH
Confidence 3444455555555655543 467999999999988888887776521 22222 444444555566789999876
Q ss_pred h
Q 031033 165 C 165 (167)
Q Consensus 165 C 165 (167)
+
T Consensus 142 ~ 142 (158)
T 1naf_A 142 V 142 (158)
T ss_dssp H
T ss_pred h
Confidence 4
No 23
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.34 E-value=67 Score=24.73 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHH
Q 031033 107 ALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQ 153 (167)
Q Consensus 107 aLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~q 153 (167)
+.+..|.++.+...+|+..+..-+..-..-...-+..|+++++.++.
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~r 132 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888755321111222234445555555544
No 24
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=32.73 E-value=1.2e+02 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcc
Q 031033 105 SDALVNELNNHFEKCQQLLSSISES 129 (167)
Q Consensus 105 sDaLvnEL~skFqkcqQLLnSisgs 129 (167)
.|+++.+++..+..|+..|.+|...
T Consensus 52 l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 52 LEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998754
No 25
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=32.16 E-value=1.3e+02 Score=22.91 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHH--------HHHHHhhhhccccccccCHHHHHHhHHHHHHHHHH
Q 031033 89 MENLADAIENGTRDQQSDALVNELNNHFEK--------CQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQ 153 (167)
Q Consensus 89 Ve~Lad~ie~gtrDq~sDaLvnEL~skFqk--------cqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~q 153 (167)
.+.|.+.|..++-|. +.|++|-.+..+ +-+.-+-|-.+ +|||++++=-+..++.+..
T Consensus 73 r~~l~~Li~ad~fDe---aa~ral~~~~~~~~~e~~v~r~k~~~qiy~v-----LTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 73 LETMHRLVTAENFDE---NAVRAQAEKMANEQIARQVEMAKVRNQMYRL-----LTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHTCSSCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHHHH
Confidence 356667788888884 334444444433 33445666667 6998766544444444433
No 26
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=31.84 E-value=58 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.5
Q ss_pred CHHHHHHhHHHHHHHHHHH-HHHHHHHHhh
Q 031033 136 TVEGQRRKLEESEQLLNQR-KSVMLMLRVF 164 (167)
Q Consensus 136 tvE~Qkq~Lee~rqql~qR-reLl~KYKsl 164 (167)
...+|-+-|+|+++.|++- +-.|.|||.+
T Consensus 59 eqqEqdrAlqel~qeL~tl~~pFL~KYR~f 88 (102)
T 1z8u_A 59 EPQERDKALQELRQELNTLANPFLAKYRDF 88 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3556778899999999985 5689999975
No 27
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=31.39 E-value=83 Score=24.59 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhh
Q 031033 84 HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSS 125 (167)
Q Consensus 84 hllpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnS 125 (167)
.|||+++||-.|++....| .++++.-+..=..+...+|..
T Consensus 74 ~LLpVlDnlerAl~~~~~~--~~~l~~Gv~m~~~~l~~~L~k 113 (177)
T 3a6m_A 74 ALLPVLDDLDRALEFAEAS--PESIRQGVRAIRDGFFRILAG 113 (177)
T ss_dssp HHHHHHHHHHHHHHTGGGC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999876555 445555444444555555543
No 28
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=31.25 E-value=33 Score=23.55 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031033 109 VNELNNHFEKCQQLLSS 125 (167)
Q Consensus 109 vnEL~skFqkcqQLLnS 125 (167)
||+|-.+|..+++....
T Consensus 52 Vn~Llkqf~~m~kmmk~ 68 (69)
T 1dul_A 52 VNRLLKQFDDMQRMMKK 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77777777777776543
No 29
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.19 E-value=1.3e+02 Score=21.35 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHhh
Q 031033 142 RKLEESEQLLNQRKSV---MLMLRVF 164 (167)
Q Consensus 142 q~Lee~rqql~qRreL---l~KYKsl 164 (167)
+++.|++.+++-|..| |+.||++
T Consensus 62 ~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 62 QQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999887 6789876
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.03 E-value=47 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 031033 143 KLEESEQLLNQRKSVMLMLRVFC 165 (167)
Q Consensus 143 ~Lee~rqql~qRreLl~KYKslC 165 (167)
.+++++..|.+|.++|.+.++-|
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777666655
No 31
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=30.66 E-value=95 Score=29.44 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhccccccc-------cCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 031033 103 QQSDALVNELNNHFEKCQQLLSSISESLDTKA-------MTVEGQRRKLEESEQLLNQRKSVMLML 161 (167)
Q Consensus 103 q~sDaLvnEL~skFqkcqQLLnSisgsi~~k~-------~tvE~Qkq~Lee~rqql~qRreLl~KY 161 (167)
.+.++++..|..+.++.++-|.++.+-+++.. --||.-|.+|+++++.+..=++.|++.
T Consensus 796 ~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 796 LDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678889999999999999999999887643 258888999999999888777766653
No 32
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.09 E-value=1.1e+02 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHhh
Q 031033 142 RKLEESEQLLNQRKSV---MLMLRVF 164 (167)
Q Consensus 142 q~Lee~rqql~qRreL---l~KYKsl 164 (167)
+++.|+++++|-|-.| |+-||++
T Consensus 30 ~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 30 QQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999998776 5678865
No 33
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.62 E-value=75 Score=19.89 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=7.6
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 031033 140 QRRKLEESEQLLNQRKSVM 158 (167)
Q Consensus 140 Qkq~Lee~rqql~qRreLl 158 (167)
-+.+|.++.+-|+.=++=|
T Consensus 31 ~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 31 AKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 34
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=29.04 E-value=28 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 031033 109 VNELNNHFEKCQQLLSSIS 127 (167)
Q Consensus 109 vnEL~skFqkcqQLLnSis 127 (167)
||+|-.+|+.+++....|.
T Consensus 86 Vn~LLkqf~~m~kmmk~m~ 104 (105)
T 1hq1_A 86 VNRLLKQFDDMQRMMKKMK 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 7888888888888776654
No 35
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=28.83 E-value=12 Score=29.82 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=0.0
Q ss_pred HHHHHh
Q 031033 73 NQHHQS 78 (167)
Q Consensus 73 ~~~hqs 78 (167)
+++|++
T Consensus 131 q~~~~~ 136 (150)
T 1qb3_A 131 QQQHQT 136 (150)
T ss_dssp ------
T ss_pred hccccC
Confidence 334443
No 36
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=28.79 E-value=1.4e+02 Score=21.44 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=30.6
Q ss_pred hHHHHHhhhhhhhHHHHHHHH----HHHHhcCCcccchHHHH------HHHHHHHHHHHHHHhhhh
Q 031033 72 QNQHHQSLASNFHLLHLMENL----ADAIENGTRDQQSDALV------NELNNHFEKCQQLLSSIS 127 (167)
Q Consensus 72 ~~~~hqsLashfhllpLVe~L----ad~ie~gtrDq~sDaLv------nEL~skFqkcqQLLnSis 127 (167)
+..+.+.|.+. |||+|+.+ |.-|..---+.....++ +.|++|++++-.+|.+..
T Consensus 17 p~~Qkq~LGE~--Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~ 80 (88)
T 3kuj_A 17 PQEQKQMLGER--LFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 80 (88)
T ss_dssp HHHHHHHHHHH--HHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 44566788887 99999987 33333332233333344 344556666666665544
No 37
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=28.19 E-value=25 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHhhhhc
Q 031033 96 IENGTRDQQSDALVNELNNHFEKCQQLLSSISE 128 (167)
Q Consensus 96 ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisg 128 (167)
|.+|+-=.-.| ||+|-.+|+.+++....|.|
T Consensus 84 IA~GSG~~v~e--Vn~LLkqf~~m~kmmk~m~~ 114 (119)
T 2jqe_A 84 IAIGSGTSPQE--VKELLNYYKTMKNLMKKMKK 114 (119)
T ss_dssp HHHHHTSCHHH--HHHHHHHHHHHHHHTTTCCS
T ss_pred HHccCCCCHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 44443333346 99999999999999998875
No 38
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.65 E-value=74 Score=20.80 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q 031033 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLD 131 (167)
Q Consensus 85 llpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi~ 131 (167)
|--.|..|...-+..+. ..+....++++..|.++..+|++|+.-|.
T Consensus 34 L~~~~~~l~~~W~G~a~-~aF~~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 34 LTQEQAVIDENWDGSTF-DSFEAQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHBCSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666655555555 45577888999999999999999987753
No 39
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.59 E-value=32 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhccc
Q 031033 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESL 130 (167)
Q Consensus 85 llpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgsi 130 (167)
.+--++.|+.|++.+.-+.-..--+.-.+++|++|-.|+-.+-..|
T Consensus 61 v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~~E~~~Wm~GlKrLI 106 (118)
T 2yru_A 61 VKKRMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLI 106 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcHHHHHhHHHHHHHHH
Confidence 4566788999999998777766556666778999998887666554
No 40
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=26.38 E-value=35 Score=29.40 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=24.2
Q ss_pred HHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhc
Q 031033 94 DAIENGTRDQQSDALVNELNNHFEKCQQLLSSISE 128 (167)
Q Consensus 94 d~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisg 128 (167)
+-|.+|+.=.-.| ||+|-.+|+.|++....|.|
T Consensus 400 ~ria~gsg~~~~~--v~~l~~~~~~~~~~~~~~~~ 432 (433)
T 2xxa_A 400 RRIAAGSGMQVQD--VNRLLKQFDDMQRMMKKMKK 432 (433)
T ss_dssp HHHHHHHTCCHHH--HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHccCCCCHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 4455565555556 99999999999999888764
No 41
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=26.24 E-value=8.5 Score=24.38 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 031033 105 SDALVNELNNHFEKCQQL 122 (167)
Q Consensus 105 sDaLvnEL~skFqkcqQL 122 (167)
-.+|++|++...+|||+|
T Consensus 21 nkslleevkdelqkmrql 38 (38)
T 1c94_A 21 NKSLLEEVKDELQKMRQL 38 (38)
T ss_dssp HHHHHHHHHHHHTTSSCC
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 367899999999998864
No 42
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.09 E-value=1.7e+02 Score=20.53 Aligned_cols=53 Identities=13% Similarity=0.319 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHH-HHhHHHHHHHHHH
Q 031033 100 TRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQ-RRKLEESEQLLNQ 153 (167)
Q Consensus 100 trDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Q-kq~Lee~rqql~q 153 (167)
+-+.. .++|.++...+++|..||.-|.--+.+-+.+.... ..+|.+++..|+.
T Consensus 32 ~geer-k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~ 85 (102)
T 1vcs_A 32 PPDEK-KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGK 85 (102)
T ss_dssp CTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHH
Confidence 34544 66799999999999999999874433223333322 3467777777654
No 43
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=25.73 E-value=1.5e+02 Score=21.70 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhcc-----cccc------ccCHHHHHHhHHHHHHHHHH
Q 031033 86 LHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES-----LDTK------AMTVEGQRRKLEESEQLLNQ 153 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgs-----i~~k------~~tvE~Qkq~Lee~rqql~q 153 (167)
|+-|..|||.|-.+.+| .+.+-=++|+.++|+-+.. +.-| .+|.|-||+=--.|+.+|+.
T Consensus 9 L~~vn~lID~~v~k~~~--------D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlDDQKkIkkRLe~Ll~~ 79 (88)
T 3cqx_C 9 LKHATRIIDEVVSKFLD--------DLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHhhHHHHHHHHHHHHHH
Confidence 55666776665444322 2334457899999987532 1111 46999999877777777764
No 44
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=25.61 E-value=2.2e+02 Score=21.49 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 86 LHLMENLADAIENGTRDQQ-SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 86 lpLVe~Lad~ie~gtrDq~-sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
+-|...+......|..+.- -+.++.||.+.-.++|.-|-.|.+..+ .-|+- |.++=+.=+.=+.+|.||+.+
T Consensus 60 ~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~----ddee~---l~elL~~ND~ln~vl~kY~~~ 132 (140)
T 1o3x_A 60 VKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTE----DNDEA---LAEILQANDNLTQVINLYKQL 132 (140)
T ss_dssp HHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCT----TCHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHcc----CCHHH---HHHHHHhhHHHHHHHHHHHHH
Confidence 3445555555556666655 578999999999999988888776521 22322 333333334445689999876
Q ss_pred h
Q 031033 165 C 165 (167)
Q Consensus 165 C 165 (167)
+
T Consensus 133 ~ 133 (140)
T 1o3x_A 133 V 133 (140)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.30 E-value=96 Score=22.84 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 031033 108 LVNELNNHFEKC 119 (167)
Q Consensus 108 LvnEL~skFqkc 119 (167)
+||||-++|++|
T Consensus 48 ~l~eLLn~~E~e 59 (91)
T 4aj5_A 48 VINELLNKLELE 59 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777777776
No 46
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=24.08 E-value=2.4e+02 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcc
Q 031033 105 SDALVNELNNHFEKCQQLLSSISES 129 (167)
Q Consensus 105 sDaLvnEL~skFqkcqQLLnSisgs 129 (167)
.+.|..+++..|.+|+..|..|...
T Consensus 90 ie~l~~~i~~~~~~i~~~lk~l~~~ 114 (279)
T 2xhe_B 90 LQDTMARISALGNKIRADLKQIEKE 114 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888899999999988854
No 47
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.86 E-value=1.8e+02 Score=19.99 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHH
Q 031033 101 RDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQ 153 (167)
Q Consensus 101 rDq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~q 153 (167)
.|...++-|++|-.|..--...|..++.. |-.|.+.++.++.+|+.
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~-------v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEA-------LADARLTGARNAELIRH 53 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45555667889999988888888888765 56888889988887753
No 48
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=23.44 E-value=2.5e+02 Score=21.42 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHH-------HHHHHH-HHhhhhccc-c--ccccCHHHHHHhHHHHHHHHHHHHH
Q 031033 88 LMENLADAIENGTRDQQSDALVNELNNH-------FEKCQQ-LLSSISESL-D--TKAMTVEGQRRKLEESEQLLNQRKS 156 (167)
Q Consensus 88 LVe~Lad~ie~gtrDq~sDaLvnEL~sk-------FqkcqQ-LLnSisgsi-~--~k~~tvE~Qkq~Lee~rqql~qRre 156 (167)
+++.|-++++.+ ...|.++-||++- +.+|+. ++.+|=..+ . +...+.. .-.+..++.+..++.
T Consensus 18 v~~sl~ra~~e~---~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~---~~~~a~~~~i~~~~~ 91 (182)
T 3jui_A 18 VLGTLQRGKEEN---ISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSS---RYCALLLPLLKAWSP 91 (182)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChh---hHHHHHHHHHHHHHH
Confidence 566777777765 3678888888874 444444 333332111 0 1111222 345577889999999
Q ss_pred HHHHH
Q 031033 157 VMLML 161 (167)
Q Consensus 157 Ll~KY 161 (167)
||.+|
T Consensus 92 ll~~~ 96 (182)
T 3jui_A 92 VFRNY 96 (182)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 49
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.49 E-value=27 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCcccchHHHHHHHH
Q 031033 88 LMENLADAIENGTRDQQSDALVNELN 113 (167)
Q Consensus 88 LVe~Lad~ie~gtrDq~sDaLvnEL~ 113 (167)
+|++|.|++++|+-|..--.||+.++
T Consensus 4 ~~~rl~~~~~kG~VD~~i~~ll~~IN 29 (188)
T 2dvk_A 4 IEEVLLEERLIGYLDPGAEKVLARIN 29 (188)
T ss_dssp --------------CGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 68999999999999998777776554
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.39 E-value=83 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHhh
Q 031033 142 RKLEESEQLLNQRKSV---MLMLRVF 164 (167)
Q Consensus 142 q~Lee~rqql~qRreL---l~KYKsl 164 (167)
++|.|+..+++-|-.| |+-||+|
T Consensus 102 ~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 102 QQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888776 6678876
No 51
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=22.17 E-value=3.2e+02 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 031033 106 DALVNELNNHFEKCQQLLSSIS 127 (167)
Q Consensus 106 DaLvnEL~skFqkcqQLLnSis 127 (167)
.+|..++.++|++..++|..|.
T Consensus 213 ~~L~~~i~~~~~~~~~~l~~~~ 234 (283)
T 3at7_A 213 RAFADKVDANFDTVFKTLAKYR 234 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3688999999999999999996
No 52
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=22.14 E-value=1.1e+02 Score=20.24 Aligned_cols=32 Identities=9% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccCHH
Q 031033 107 ALVNELNNHFEKCQQLLSSISESLDTKAMTVE 138 (167)
Q Consensus 107 aLvnEL~skFqkcqQLLnSisgsi~~k~~tvE 138 (167)
-|+.+|..+-...+.++.+..+.+....+.+|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~le 37 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALA 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35666666655666666655444333333333
No 53
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=22.12 E-value=72 Score=22.70 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=31.7
Q ss_pred hhhhh-hHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhh
Q 031033 79 LASNF-HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (167)
Q Consensus 79 Lashf-hllpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSis 127 (167)
|..+. ++=+|+++| .++|.=..+-+.++.+-++..+|+|+||..+.
T Consensus 22 LV~~l~~V~~lLD~L---L~~~VL~~ee~~I~~~~~T~~~kaR~Lld~v~ 68 (98)
T 2nz7_A 22 LVTHIRNTQCLVDNL---LKNDYFSAEDAEIVCACPTQPDKVRKILDLVQ 68 (98)
T ss_dssp HHHHCCCCHHHHHHH---HHTTSSCHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH---HHcCCCCHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 44444 566777766 67773333326666667999999999998885
No 54
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=22.10 E-value=1.9e+02 Score=19.55 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccc-------CHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 110 NELNNHFEKCQQLLSSISESLDTKAM-------TVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 110 nEL~skFqkcqQLLnSisgsi~~k~~-------tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
+.++..|.+.+.||-+.++-. +|+. +...=+..++++++.+..=+.-+++.+++
T Consensus 19 ~~in~~f~~L~~lvP~~~~k~-~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 19 SSINDKIIELKDLVVGTEAKL-NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHTCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457788999998886532111 1211 33334455555666655556666666554
No 55
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.95 E-value=1e+02 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccc
Q 031033 105 SDALVNELNNHFEKCQQLLSSISESLD 131 (167)
Q Consensus 105 sDaLvnEL~skFqkcqQLLnSisgsi~ 131 (167)
.+..++||++..+.+...++.+...++
T Consensus 247 L~~V~~eL~~~~~~i~~~~~~~~~~l~ 273 (413)
T 4hpq_C 247 LAAINSLLQDAAIDVASFVRKVNMLLD 273 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888777777777665555543
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.69 E-value=89 Score=22.67 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHhh
Q 031033 142 RKLEESEQLLNQRKSV---MLMLRVF 164 (167)
Q Consensus 142 q~Lee~rqql~qRreL---l~KYKsl 164 (167)
+++.|+..+++-|-.| |+-||+|
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777788877766 5678776
No 57
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.60 E-value=2.1e+02 Score=23.36 Aligned_cols=53 Identities=9% Similarity=0.244 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 031033 102 DQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEESEQLLNQRKSVMLMLRVF 164 (167)
Q Consensus 102 Dq~sDaLvnEL~skFqkcqQLLnSisgsi~~k~~tvE~Qkq~Lee~rqql~qRreLl~KYKsl 164 (167)
.|+-| -.|||.++++...+|..|=+. .+++| +|.+++--|+.|..||..-|++
T Consensus 115 ~Q~ED--AkeLKe~ldRRe~~V~~iL~~----~L~~e----ql~DY~~fv~mKa~Ll~eqReL 167 (190)
T 3thf_A 115 EQMEE--AQRLKSDIERRGVSIAGLLAK----NLSAD----MCADYDYFINMKAKLIADARDL 167 (190)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHH----HSCHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHH----hCCHH----HHHHHHHHHHHHHHHHHHHHhH
Confidence 45666 568999999999988877665 57877 4888999999999998776654
No 58
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=21.48 E-value=2.4e+02 Score=20.47 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhhhcc
Q 031033 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (167)
Q Consensus 85 llpLVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSisgs 129 (167)
|-+-+|++.+.+..|..+.. .++++.|..-++..+.+|..+.+.
T Consensus 65 lah~lE~~l~~~r~g~~~~~-~~l~~~l~~~~D~l~~~l~~~~~~ 108 (146)
T 1i5n_A 65 TTHLMENLLDEARRGEMQLN-TDIINLFLETKDIMQEQLDAYKNS 108 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCCC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566788777777766555 678999999999999999998753
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.71 E-value=1.6e+02 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031033 108 LVNELNNHFEKCQQLLS 124 (167)
Q Consensus 108 LvnEL~skFqkcqQLLn 124 (167)
.|++....+++-+..|.
T Consensus 143 ~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 143 ILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777776665554
No 60
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.66 E-value=1.1e+02 Score=19.82 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHhh
Q 031033 142 RKLEESEQLLNQRKSV---MLMLRVF 164 (167)
Q Consensus 142 q~Lee~rqql~qRreL---l~KYKsl 164 (167)
+++.|+..++|-|-.| |+-||++
T Consensus 25 ~q~~eYq~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 25 RLKKLVGDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3477899999998776 5678865
No 61
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=20.20 E-value=2e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHhhh
Q 031033 88 LMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSI 126 (167)
Q Consensus 88 LVe~Lad~ie~gtrDq~sDaLvnEL~skFqkcqQLLnSi 126 (167)
-|.+++..+|+..++ .++++..|...|.+++..|+..
T Consensus 70 ~l~~~c~~lE~~~~~--~~~~~~~L~~a~~~~~~~l~~~ 106 (113)
T 2ooc_A 70 NLGEVCERCEAGQES--LEGVRTALDAALLDIAAYAHEQ 106 (113)
T ss_dssp HHHHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888877 5777889999999988887764
No 62
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.12 E-value=46 Score=23.07 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031033 106 DALVNELNNHFEKCQQLLS 124 (167)
Q Consensus 106 DaLvnEL~skFqkcqQLLn 124 (167)
|+.|++|.++..|++.++.
T Consensus 38 d~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 38 EEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6779999999999999997
Done!