BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031034
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
           Of The Penta-Ef-Hand Protein Family
 pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
           Of The Penta-Ef-Hand Protein Family
          Length = 198

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 79  ARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113
            + +DP+YG   A++    QID  + Q  L Q+ +
Sbjct: 29  GQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGI 63


>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
           Mutant
 pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
           Mutant
 pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
           Mutant
 pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
           Mutant
          Length = 198

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 79  ARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113
            + +DP+YG   A++    QID  + Q  L Q+ +
Sbjct: 29  GQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGI 63


>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
           The Actively Translating Wheat Germ 80s Ribosome
          Length = 476

 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 51  ASNVNKMLQELPVHQRGDAVSSMVYEANARV-RDPVYG--CVGAISSLQNQIDVLQTQLA 107
           A +V K L+E  +  RG   +SMV+E N  +     +G  C+GA+S L + +  + +   
Sbjct: 387 AKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTG 446

Query: 108 LAQAEVV 114
           +  A  +
Sbjct: 447 ILLAVTI 453


>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
           Coa-Transferase From Porphyromonas Gingivalis W83
          Length = 434

 Score = 26.6 bits (57), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 84  PVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLS 125
           P+     A+++L+N++D + T+  +AQ +   LR R  A ++
Sbjct: 374 PIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA 415


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,941,276
Number of Sequences: 62578
Number of extensions: 120629
Number of successful extensions: 217
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)