Query 031034
Match_columns 167
No_of_seqs 137 out of 316
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 8.5E-52 1.8E-56 311.1 9.5 101 13-113 1-101 (101)
2 COG3416 Uncharacterized protei 91.0 3.2 6.9E-05 36.0 10.1 67 53-119 11-77 (233)
3 PF09849 DUF2076: Uncharacteri 85.9 6.9 0.00015 34.0 9.0 63 53-115 11-73 (247)
4 PF10883 DUF2681: Protein of u 79.0 2.7 5.8E-05 31.4 3.4 34 92-125 32-65 (87)
5 PF13334 DUF4094: Domain of un 77.1 2.3 5.1E-05 31.8 2.6 24 89-112 72-95 (95)
6 PF07106 TBPIP: Tat binding pr 76.4 2.8 6E-05 33.2 3.0 83 37-119 18-108 (169)
7 PF09006 Surfac_D-trimer: Lung 75.9 7.1 0.00015 26.3 4.4 27 92-118 1-27 (46)
8 PF05308 Mito_fiss_reg: Mitoch 75.1 7.3 0.00016 33.9 5.5 24 97-120 122-145 (253)
9 TIGR03021 pilP_fam type IV pil 74.7 15 0.00032 28.5 6.6 26 89-114 4-29 (119)
10 PF11333 DUF3135: Protein of u 72.4 14 0.00031 27.1 5.7 66 37-106 15-82 (83)
11 PRK02793 phi X174 lysis protei 70.2 17 0.00036 25.8 5.5 26 91-116 30-55 (72)
12 PRK00295 hypothetical protein; 69.5 19 0.00042 25.2 5.6 26 91-116 27-52 (68)
13 PF06305 DUF1049: Protein of u 69.3 10 0.00022 25.4 4.0 27 91-117 42-68 (68)
14 PRK02119 hypothetical protein; 67.2 21 0.00045 25.4 5.5 25 91-115 31-55 (73)
15 PRK00846 hypothetical protein; 66.6 21 0.00046 26.0 5.5 28 90-117 34-61 (77)
16 PRK04406 hypothetical protein; 65.8 22 0.00048 25.5 5.4 24 91-114 33-56 (75)
17 PRK10265 chaperone-modulator p 64.9 15 0.00032 27.3 4.5 33 85-117 66-98 (101)
18 PF14282 FlxA: FlxA-like prote 62.5 13 0.00029 27.9 4.0 22 93-114 54-75 (106)
19 KOG4196 bZIP transcription fac 61.8 15 0.00032 29.7 4.2 54 65-118 54-109 (135)
20 PRK00888 ftsB cell division pr 61.4 17 0.00037 27.4 4.3 24 91-114 28-51 (105)
21 PF14282 FlxA: FlxA-like prote 60.5 33 0.00072 25.7 5.8 27 95-121 49-75 (106)
22 PF12097 DUF3573: Protein of u 60.4 10 0.00022 35.1 3.5 22 91-112 43-64 (383)
23 PF06698 DUF1192: Protein of u 56.7 23 0.0005 24.7 4.0 27 92-118 23-49 (59)
24 PF04977 DivIC: Septum formati 56.1 32 0.0007 23.1 4.7 25 92-116 19-43 (80)
25 PRK00736 hypothetical protein; 54.8 49 0.0011 23.2 5.5 25 91-115 27-51 (68)
26 COG5509 Uncharacterized small 52.5 28 0.00061 24.9 3.9 24 92-115 27-50 (65)
27 PF04102 SlyX: SlyX; InterPro 51.2 22 0.00048 24.8 3.3 25 92-116 27-51 (69)
28 PF04977 DivIC: Septum formati 50.6 33 0.00072 23.1 4.1 27 90-116 24-50 (80)
29 KOG0614 cGMP-dependent protein 50.5 36 0.00077 33.7 5.5 53 90-142 45-98 (732)
30 KOG1655 Protein involved in va 49.4 39 0.00085 29.2 5.1 53 46-118 2-54 (218)
31 cd04766 HTH_HspR Helix-Turn-He 48.9 33 0.00072 24.4 4.0 29 84-113 60-88 (91)
32 PF13591 MerR_2: MerR HTH fami 48.9 22 0.00047 25.5 3.0 23 88-110 61-83 (84)
33 PF12325 TMF_TATA_bd: TATA ele 48.6 40 0.00087 26.3 4.7 32 87-118 13-44 (120)
34 PF06818 Fez1: Fez1; InterPro 47.9 32 0.0007 29.3 4.4 31 89-119 9-39 (202)
35 PF14197 Cep57_CLD_2: Centroso 45.1 52 0.0011 23.3 4.4 32 87-118 37-68 (69)
36 smart00338 BRLZ basic region l 44.1 64 0.0014 21.6 4.6 28 90-117 33-60 (65)
37 PF15397 DUF4618: Domain of un 43.3 38 0.00083 29.8 4.2 58 53-118 52-109 (258)
38 PRK10803 tol-pal system protei 42.7 41 0.00088 28.9 4.3 25 90-114 54-78 (263)
39 PF07334 IFP_35_N: Interferon- 42.1 47 0.001 24.4 3.9 26 91-116 1-26 (76)
40 TIGR02209 ftsL_broad cell divi 42.1 47 0.001 23.0 3.8 27 93-119 27-53 (85)
41 PF04728 LPP: Lipoprotein leuc 42.0 54 0.0012 22.8 4.0 22 92-113 12-33 (56)
42 PRK14127 cell division protein 41.8 1.1E+02 0.0024 23.6 6.1 28 92-119 39-66 (109)
43 PHA02562 46 endonuclease subun 41.1 43 0.00094 30.6 4.4 24 30-53 141-164 (562)
44 cd01111 HTH_MerD Helix-Turn-He 41.1 92 0.002 23.2 5.5 29 88-116 78-106 (107)
45 PF13600 DUF4140: N-terminal d 40.1 61 0.0013 23.4 4.3 30 89-118 69-98 (104)
46 PF11336 DUF3138: Protein of u 39.8 69 0.0015 30.8 5.5 25 90-114 25-49 (514)
47 PLN02523 galacturonosyltransfe 38.9 95 0.0021 30.3 6.5 56 56-116 145-202 (559)
48 PF05120 GvpG: Gas vesicle pro 38.1 42 0.00092 24.5 3.2 35 84-118 8-42 (79)
49 PF11853 DUF3373: Protein of u 37.7 51 0.0011 31.6 4.4 34 82-116 17-50 (489)
50 PHA02047 phage lambda Rz1-like 37.7 81 0.0017 24.4 4.7 22 96-117 33-54 (101)
51 PF12325 TMF_TATA_bd: TATA ele 37.6 69 0.0015 25.0 4.4 27 90-116 30-56 (120)
52 PRK09039 hypothetical protein; 37.6 53 0.0012 29.4 4.3 24 90-113 137-160 (343)
53 PRK00451 glycine dehydrogenase 37.6 28 0.0006 30.9 2.5 33 31-64 2-34 (447)
54 PRK04325 hypothetical protein; 36.9 1.3E+02 0.0029 21.3 5.5 25 91-115 31-55 (74)
55 TIGR03021 pilP_fam type IV pil 36.5 84 0.0018 24.3 4.8 24 96-119 4-27 (119)
56 PF07716 bZIP_2: Basic region 36.0 1E+02 0.0022 20.1 4.5 26 92-117 27-52 (54)
57 TIGR02209 ftsL_broad cell divi 35.4 76 0.0017 21.9 4.0 31 88-118 29-59 (85)
58 PRK15396 murein lipoprotein; P 34.7 67 0.0015 23.5 3.7 28 91-118 26-53 (78)
59 PF03242 LEA_3: Late embryogen 34.4 14 0.00031 27.7 0.2 20 74-93 58-77 (93)
60 PF04012 PspA_IM30: PspA/IM30 32.4 1.1E+02 0.0024 24.9 5.1 42 68-116 8-49 (221)
61 PF15483 DUF4641: Domain of un 31.7 51 0.0011 31.3 3.3 31 85-116 414-444 (445)
62 PRK00888 ftsB cell division pr 31.3 93 0.002 23.4 4.2 14 45-58 17-30 (105)
63 PF15300 INT_SG_DDX_CT_C: INTS 31.2 41 0.00088 23.9 2.0 27 52-78 23-51 (65)
64 PRK14127 cell division protein 31.1 93 0.002 24.0 4.2 31 89-119 43-73 (109)
65 PF02185 HR1: Hr1 repeat; Int 30.7 1.6E+02 0.0035 20.0 5.0 29 91-119 34-62 (70)
66 PRK11239 hypothetical protein; 30.4 85 0.0018 27.2 4.2 30 89-118 182-211 (215)
67 PRK14626 hypothetical protein; 30.3 74 0.0016 24.4 3.5 30 90-119 5-34 (110)
68 PF06696 Strep_SA_rep: Strepto 30.1 1.2E+02 0.0027 17.8 4.0 21 95-115 3-23 (25)
69 smart00338 BRLZ basic region l 30.0 1.5E+02 0.0032 19.8 4.6 29 91-119 27-55 (65)
70 KOG4098 Molecular chaperone Pr 30.0 98 0.0021 25.2 4.2 62 52-113 49-116 (140)
71 PRK14625 hypothetical protein; 29.8 68 0.0015 24.7 3.2 29 91-119 3-31 (109)
72 smart00150 SPEC Spectrin repea 29.7 1.7E+02 0.0037 19.3 5.0 38 82-119 23-60 (101)
73 PRK10963 hypothetical protein; 29.5 1.5E+02 0.0033 24.7 5.6 54 52-114 6-61 (223)
74 PRK10884 SH3 domain-containing 29.3 1E+02 0.0022 26.0 4.5 27 92-118 134-160 (206)
75 PF04706 Dickkopf_N: Dickkopf 29.1 33 0.00071 23.2 1.2 16 12-27 21-36 (52)
76 PF04508 Pox_A_type_inc: Viral 28.8 98 0.0021 18.0 3.0 18 92-109 3-20 (23)
77 PF04728 LPP: Lipoprotein leuc 28.7 1.4E+02 0.0031 20.7 4.4 23 92-114 19-41 (56)
78 PRK14623 hypothetical protein; 28.6 74 0.0016 24.3 3.2 28 92-119 3-30 (106)
79 PRK11677 hypothetical protein; 28.6 57 0.0012 26.0 2.7 35 85-119 15-51 (134)
80 PF08657 DASH_Spc34: DASH comp 28.0 1.2E+02 0.0026 26.5 4.8 35 82-116 172-206 (259)
81 PF05308 Mito_fiss_reg: Mitoch 27.6 63 0.0014 28.2 3.0 22 88-109 120-141 (253)
82 KOG4552 Vitamin-D-receptor int 27.6 94 0.002 27.4 4.1 47 54-108 59-106 (272)
83 PF06295 DUF1043: Protein of u 27.5 83 0.0018 24.3 3.4 23 92-114 27-49 (128)
84 cd00089 HR1 Protein kinase C-r 27.4 1.9E+02 0.0042 19.7 5.0 28 90-117 42-69 (72)
85 PF14257 DUF4349: Domain of un 26.9 1.3E+02 0.0028 25.3 4.7 33 88-120 160-192 (262)
86 PF05377 FlaC_arch: Flagella a 26.7 1.4E+02 0.003 20.7 4.0 22 92-113 16-37 (55)
87 PF04697 Pinin_SDK_N: pinin/SD 26.7 1E+02 0.0022 24.9 3.8 30 91-120 4-33 (134)
88 PLN02281 chlorophyllide a oxyg 26.6 90 0.0019 30.3 4.1 53 61-113 91-144 (536)
89 PF04420 CHD5: CHD5-like prote 26.6 94 0.002 24.8 3.7 45 71-119 50-95 (161)
90 PF13600 DUF4140: N-terminal d 26.4 1.2E+02 0.0026 21.8 3.9 26 91-116 78-103 (104)
91 PF11387 DUF2795: Protein of u 26.2 87 0.0019 20.1 2.8 32 34-65 6-37 (44)
92 COG2900 SlyX Uncharacterized p 26.1 2.6E+02 0.0057 20.4 5.5 23 94-116 33-55 (72)
93 PRK14622 hypothetical protein; 25.7 86 0.0019 23.7 3.1 28 92-119 3-30 (103)
94 PF06295 DUF1043: Protein of u 25.2 1.3E+02 0.0028 23.2 4.1 23 97-119 25-47 (128)
95 PF08227 DASH_Hsk3: DASH compl 25.2 1.8E+02 0.0039 19.3 4.2 25 91-115 3-27 (45)
96 PRK14624 hypothetical protein; 25.1 92 0.002 24.2 3.2 30 91-120 7-36 (115)
97 PF07820 TraC: TraC-like prote 25.0 1.3E+02 0.0027 23.0 3.8 20 92-111 4-23 (92)
98 TIGR00012 L29 ribosomal protei 24.9 92 0.002 20.7 2.8 25 99-123 7-31 (55)
99 PF11471 Sugarporin_N: Maltopo 24.9 1.4E+02 0.003 20.6 3.8 23 94-116 29-51 (60)
100 PF04340 DUF484: Protein of un 24.8 1.4E+02 0.0029 24.6 4.4 56 52-116 9-66 (225)
101 PF14623 Vint: Hint-domain 24.4 17 0.00038 30.0 -0.9 38 45-88 122-159 (162)
102 PF01608 I_LWEQ: I/LWEQ domain 24.3 1.1E+02 0.0024 24.9 3.7 26 97-122 125-150 (152)
103 PF12808 Mto2_bdg: Micro-tubul 24.3 2.4E+02 0.0052 19.2 5.5 41 68-109 8-48 (52)
104 PF00170 bZIP_1: bZIP transcri 23.8 2E+02 0.0043 19.2 4.4 24 92-115 28-51 (64)
105 TIGR00293 prefoldin, archaeal 23.5 1.9E+02 0.0041 21.5 4.6 28 91-118 7-34 (126)
106 PF00831 Ribosomal_L29: Riboso 23.5 1.1E+02 0.0024 20.5 3.1 24 99-122 9-32 (58)
107 PF00172 Zn_clus: Fungal Zn(2) 23.4 49 0.0011 20.4 1.2 15 12-26 1-15 (40)
108 PRK01203 prefoldin subunit alp 23.2 1.5E+02 0.0033 23.5 4.2 26 91-116 8-33 (130)
109 PRK13169 DNA replication intia 23.2 1.8E+02 0.004 22.4 4.5 25 94-118 26-50 (110)
110 PRK00587 hypothetical protein; 22.8 1.1E+02 0.0024 23.1 3.2 28 92-119 3-30 (99)
111 PF12718 Tropomyosin_1: Tropom 22.8 1.5E+02 0.0033 23.3 4.2 26 91-116 36-61 (143)
112 PF02050 FliJ: Flagellar FliJ 22.8 2.2E+02 0.0048 19.6 4.7 27 90-116 52-78 (123)
113 PF06005 DUF904: Protein of un 22.6 1.7E+02 0.0037 20.9 4.0 22 85-106 13-34 (72)
114 TIGR00293 prefoldin, archaeal 22.4 1.4E+02 0.0029 22.3 3.7 26 94-119 3-28 (126)
115 TIGR01010 BexC_CtrB_KpsE polys 22.1 1.5E+02 0.0032 26.0 4.4 54 67-120 146-200 (362)
116 PRK10803 tol-pal system protei 22.1 1.3E+02 0.0029 25.8 4.0 31 90-120 61-91 (263)
117 PLN02742 Probable galacturonos 21.9 3.2E+02 0.0069 26.7 6.8 49 64-116 132-180 (534)
118 PRK03762 hypothetical protein; 21.8 1.4E+02 0.0031 22.7 3.6 27 92-118 7-33 (103)
119 PRK13922 rod shape-determining 21.8 1.7E+02 0.0038 24.6 4.6 42 75-116 51-95 (276)
120 PF10883 DUF2681: Protein of u 21.8 1.6E+02 0.0035 22.0 3.9 20 95-114 28-47 (87)
121 PF10481 CENP-F_N: Cenp-F N-te 21.6 2E+02 0.0043 26.2 5.0 32 85-116 97-128 (307)
122 PF15619 Lebercilin: Ciliary p 21.6 1.6E+02 0.0034 24.6 4.2 31 90-120 12-42 (194)
123 COG5393 Predicted membrane pro 21.1 1.1E+02 0.0023 24.7 2.9 33 85-119 94-126 (131)
124 PRK09413 IS2 repressor TnpA; R 21.0 1.8E+02 0.0038 21.8 4.1 25 92-116 80-104 (121)
125 PF07798 DUF1640: Protein of u 21.0 1.8E+02 0.0038 23.4 4.3 22 93-114 47-68 (177)
126 TIGR00103 DNA_YbaB_EbfC DNA-bi 21.0 1.4E+02 0.003 22.3 3.4 29 91-119 6-34 (102)
127 PRK14621 hypothetical protein; 21.0 1.3E+02 0.0028 23.1 3.3 29 91-119 5-33 (111)
128 PF12240 Angiomotin_C: Angiomo 20.8 3.3E+02 0.007 23.5 6.0 55 80-134 126-183 (205)
129 PF06156 DUF972: Protein of un 20.8 2.2E+02 0.0048 21.7 4.5 28 89-116 7-34 (107)
130 COG3879 Uncharacterized protei 20.7 1.4E+02 0.0031 26.2 3.9 40 76-117 45-84 (247)
131 KOG3436 60S ribosomal protein 20.6 1.3E+02 0.0029 24.0 3.4 24 98-121 13-36 (123)
132 PRK14549 50S ribosomal protein 20.6 1.2E+02 0.0026 21.3 2.8 24 99-122 14-37 (69)
133 TIGR02231 conserved hypothetic 20.2 1.5E+02 0.0033 27.4 4.3 29 91-119 72-100 (525)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=8.5e-52 Score=311.08 Aligned_cols=101 Identities=72% Similarity=1.230 Sum_probs=99.6
Q ss_pred CChhhHHhhhCCCCCCccCCCCCCCchHHHHHHHHHhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHH
Q 031034 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAI 92 (167)
Q Consensus 13 ~CAACK~lRRrC~~~C~lAPYFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I 92 (167)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el 113 (167)
+.||+||+.+++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.96 E-value=3.2 Score=36.03 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred hHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 53 NVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 53 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..+++||+.++.+|+.++.-
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677789999999999999999999999999999999999999999999999999866553
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=85.87 E-value=6.9 Score=34.02 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=57.1
Q ss_pred hHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 53 NVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 53 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
++..-|+.++...|+.-++.||-|+-+|.=|-+|=-+=.|...++=|+.++++|+.++++|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888999999999999999999999999999999999999999999999999965
No 4
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=78.96 E-value=2.7 Score=31.42 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLS 125 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~~ 125 (167)
+-.|+.+.+.+++|.+.+++|+.+++.+|.+.-+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 6678888899999999999999999998877644
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=77.06 E-value=2.3 Score=31.83 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAE 112 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~e 112 (167)
.-.|..|...|..||+||+.+|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346778888888888888888764
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.42 E-value=2.8 Score=33.24 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=51.7
Q ss_pred CchHHHHHHHHHhchhhHHHHhhcCCCcch---hHHHHHHHHHHhcccCCCCcc-----hhHHHHHHHHHHHHHHHHHHH
Q 031034 37 DEPQKFANVHKVFGASNVNKMLQELPVHQR---GDAVSSMVYEANARVRDPVYG-----CVGAISSLQNQIDVLQTQLAL 108 (167)
Q Consensus 37 ~~~~~F~~vhkvFG~snv~kmL~~lp~~~R---~~a~~SLvYEA~aR~rDPVyG-----cvG~I~~Lq~qi~~lq~eLa~ 108 (167)
.-..-|.|.|.-||-..|.|.|..|-.+.+ -..=.+.||=++--.-+-+.. -=.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999998865432 112233455555443331111 123466677777777777777
Q ss_pred HHHHHHHHhhh
Q 031034 109 AQAEVVHLRVR 119 (167)
Q Consensus 109 ~~~el~~~r~~ 119 (167)
+++||..++..
T Consensus 98 l~~eL~~L~~~ 108 (169)
T PF07106_consen 98 LEAELASLSSE 108 (169)
T ss_pred HHHHHHHHhcC
Confidence 77777666543
No 7
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=75.95 E-value=7.1 Score=26.26 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|..|.+|+..|+.||..+|+-+..++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999998876653
No 8
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=75.10 E-value=7.3 Score=33.91 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 97 NQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 97 ~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
++|..||.||+.+|+|||.+-..|
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888888888888776655
No 9
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=74.66 E-value=15 Score=28.52 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+|-+..||.|...++++++.++.+-.
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~e 29 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNE 29 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999888888877766544
No 10
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=72.40 E-value=14 Score=27.10 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=51.3
Q ss_pred CchHHHHHHHHHhchhhHHHHhhcCCCcc--hhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHH
Q 031034 37 DEPQKFANVHKVFGASNVNKMLQELPVHQ--RGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQL 106 (167)
Q Consensus 37 ~~~~~F~~vhkvFG~snv~kmL~~lp~~~--R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL 106 (167)
++|+.|....+ .-+-.++...|++. |-.++.+-|=---.|.++|+.-|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 36888888654 45667888888764 45566666666778899999999999999999998887665
No 11
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.24 E-value=17 Score=25.80 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+|...|++|+.|+.+|..+..+|...
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666666544
No 12
>PRK00295 hypothetical protein; Provisional
Probab=69.49 E-value=19 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+|...|++|+.|+.+|..+..+|...
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777766666544
No 13
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.28 E-value=10 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
..+.+++++..++.+++.++.|+..+|
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346678889999999999999887654
No 14
>PRK02119 hypothetical protein; Provisional
Probab=67.19 E-value=21 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
+|..-|++|+.|+.+|..+..+|..
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666555544
No 15
>PRK00846 hypothetical protein; Provisional
Probab=66.60 E-value=21 Score=26.04 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.+|...|++|+.++.+|..+..+|....
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777777777766665554
No 16
>PRK04406 hypothetical protein; Provisional
Probab=65.81 E-value=22 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+|...|++|+.|+.+|..+..+|.
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 17
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=64.88 E-value=15 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=28.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 85 VYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
-+-.+++|..|-.||+.|++|+...++.|..+-
T Consensus 66 n~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 66 DWPGIAVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999887653
No 18
>PF14282 FlxA: FlxA-like protein
Probab=62.48 E-value=13 Score=27.85 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
..||.||..|+++|+.++.+.+
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444443
No 19
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=61.83 E-value=15 Score=29.71 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHhcccCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 65 QRGDAVSSMVYEANARVRDP--VYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 65 ~R~~a~~SLvYEA~aR~rDP--VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
||..+..-==|-+.+|++-= -..-=--=..|++||+.|..|++.++-|+..|+.
T Consensus 54 QrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888886510 0000001123566666666666666666655544
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.38 E-value=17 Score=27.43 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
.+..+++|++.++++++.++++..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~ 51 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARND 51 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665555555443
No 21
>PF14282 FlxA: FlxA-like protein
Probab=60.46 E-value=33 Score=25.72 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 031034 95 LQNQIDVLQTQLALAQAEVVHLRVRQT 121 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~~r~~q~ 121 (167)
-+.++..|++||..++++|+.++.++.
T Consensus 49 k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666677777777776655543
No 22
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=60.45 E-value=10 Score=35.08 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAE 112 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~e 112 (167)
.|..||+||..||+||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888877777665
No 23
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.68 E-value=23 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|-.|+..|..|++|++.+++++..-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999888875443
No 24
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.08 E-value=32 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+..+++++..++.+++.++++...+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555555443
No 25
>PRK00736 hypothetical protein; Provisional
Probab=54.81 E-value=49 Score=23.18 Aligned_cols=25 Identities=4% Similarity=0.189 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
+|..-|++|+.|+.+|..+..+|..
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555543
No 26
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=52.45 E-value=28 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
+-.|.+.|..||.|++.+++|++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446778888888888888888864
No 27
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=51.22 E-value=22 Score=24.76 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|...|++|+.|+.+|..+..+|..+
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555433
No 28
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.61 E-value=33 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..|..|+.+++.++++...++.++..+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888776
No 29
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=50.51 E-value=36 Score=33.75 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCCCCCCCCCCCCCCCCc
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVR-QTASLSSHGFGPASPSNSGSPSS 142 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~-q~~~~~~~~~~p~~~~~~~~~~~ 142 (167)
-++-.|.++|..+..+++.+++|+..+|.- ....++...+.|.+|..++.+-+
T Consensus 45 t~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p~~~~~~~~l~p~tpl~~~~~~s 98 (732)
T KOG0614|consen 45 TILEELIKEISKLEGEIAKLTNELDKLRSVLPQKAQSAASLGPGTPLASPRSAS 98 (732)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCcccccCccccCCCCCCCCCcccC
Confidence 356678888888999999999999888762 22334555666666655544433
No 30
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.39 E-value=39 Score=29.19 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=32.2
Q ss_pred HHHhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 46 HKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 46 hkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
||+||+.+- ..|+..=.++..|+=--+ -++...|..|.+||...+.+|.++|.
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v~~r~---------------dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSVNKRS---------------DSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789998862 344444445555542211 24667777777777777777776654
No 31
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=48.87 E-value=33 Score=24.38 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=19.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 84 PVYGCVGAISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
|+-|. ..|..|..|++.|+.||+.+++++
T Consensus 60 ~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 60 NLAGV-KRILELEEELAELRAELDELRARL 88 (91)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443 334458888888888888887776
No 32
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=48.87 E-value=22 Score=25.45 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQ 110 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ 110 (167)
.+++|.+|-.+|+.|+.||..++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998765
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.62 E-value=40 Score=26.26 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 87 GCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..+++|..|+.+|..++.|+..++.+++.+..
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765544
No 34
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=47.94 E-value=32 Score=29.31 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.|-|+-|++||.+.|+|++.=-.||..+|.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5889999999999999999888888777764
No 35
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.08 E-value=52 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 87 GCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|.+..+...-..+..|+.|+...+.||.++|.
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666777888888888888888877764
No 36
>smart00338 BRLZ basic region leucin zipper.
Probab=44.12 E-value=64 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+-|..|..+...|+.++..++.++..++
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 37
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.31 E-value=38 Score=29.81 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=38.1
Q ss_pred hHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 53 NVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 53 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
+++.+|+.-...+..+| ++=+-|...+. --.++.|++|++.|.+.|..++.||..++.
T Consensus 52 ~~i~~le~~~~~~l~~a-k~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQA-KAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHccChHHHHHH-HHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444 33334444433 246889999999999999999999975543
No 38
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.74 E-value=41 Score=28.91 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
..+..|++||+.+|.|++.++-+|.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3567888899888888888887664
No 39
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.14 E-value=47 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+|..|+.+...|+.+|..+.+||...
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999888888644
No 40
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.05 E-value=47 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 93 SSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
..++.++..++.+++.+++|...++..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~e 53 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLE 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444443
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.00 E-value=54 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el 113 (167)
|..|+.+|+.|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444433
No 42
>PRK14127 cell division protein GpsB; Provisional
Probab=41.78 E-value=1.1e+02 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+-.|..++..|+.++..++.+|..++.+
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566666666666666666655554
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.09 E-value=43 Score=30.55 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=11.5
Q ss_pred cCCCCCCCchHHHHHHHHHhchhh
Q 031034 30 FAPYFPADEPQKFANVHKVFGASN 53 (167)
Q Consensus 30 lAPYFPa~~~~~F~~vhkvFG~sn 53 (167)
|.|.++....++-..+.++||...
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~ 164 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISV 164 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHH
Confidence 344444444444444555555443
No 44
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=41.06 E-value=92 Score=23.16 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|...+..+..+|+..+++|+.++++|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888888888888653
No 45
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=40.14 E-value=61 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
-..+..|+.+|+.++.+++.+++++..++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888765543
No 46
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=39.82 E-value=69 Score=30.82 Aligned_cols=25 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
-.|..||.||..||.|...++++|+
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888888876
No 47
>PLN02523 galacturonosyltransferase
Probab=38.92 E-value=95 Score=30.33 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHhhcCCC--cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 56 KMLQELPV--HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 56 kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..+++||. .+|-.+|..++++|.. .|-|..+|.+|+..|..+++++..++.+-+-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~ 202 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFA 202 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566765 4678899999999993 44467899999999999999999998766533
No 48
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=38.13 E-value=42 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=19.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 84 PVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
||.|.+-+.-+++.+.+.---.-+.++++|+.+..
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~ 42 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQE 42 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 56555555555555554433445667777765544
No 49
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.74 E-value=51 Score=31.56 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 82 RDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
-.|.....--|..+| ||++|+.||+.+|+|+..+
T Consensus 17 s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 17 SLPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred ccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccc
Confidence 344444444555555 9999999999999887543
No 50
>PHA02047 phage lambda Rz1-like protein
Probab=37.71 E-value=81 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031034 96 QNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 96 q~qi~~lq~eLa~~~~el~~~r 117 (167)
+...+.+.++|+.++.++.+++
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q 54 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQ 54 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555566666655555443
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.57 E-value=69 Score=24.95 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|-|..|++++..++.+-..+.+||..+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999988888888888755
No 52
>PRK09039 hypothetical protein; Validated
Probab=37.57 E-value=53 Score=29.39 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
..|..|++||+.|+.||+.++++|
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776666
No 53
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=37.55 E-value=28 Score=30.87 Aligned_cols=33 Identities=15% Similarity=0.578 Sum_probs=27.0
Q ss_pred CCCCCCCchHHHHHHHHHhchhhHHHHhhcCCCc
Q 031034 31 APYFPADEPQKFANVHKVFGASNVNKMLQELPVH 64 (167)
Q Consensus 31 APYFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~ 64 (167)
-||.|.. ++.-..+-+.||.++|-.+...+|.+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 34 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEE 34 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHH
Confidence 3999997 88888999999999997777666643
No 54
>PRK04325 hypothetical protein; Provisional
Probab=36.86 E-value=1.3e+02 Score=21.29 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
+|..-|++|..|+.+|..+..+|..
T Consensus 31 vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 31 TVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666655555543
No 55
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=36.45 E-value=84 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 96 QNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 96 q~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
..||+.+|+|....+++++.-+.+
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq 27 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQ 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999988888888755554
No 56
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.03 E-value=1e+02 Score=20.10 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+..|+.++..|+.+...++.++..++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777776553
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.41 E-value=76 Score=21.90 Aligned_cols=31 Identities=32% Similarity=0.270 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
-..-+..++++++.+++|-..++.|+..+..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456778888888888888888888876544
No 58
>PRK15396 murein lipoprotein; Provisional
Probab=34.70 E-value=67 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
-+-+|+.|++.|+.+...+++++...|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888877777777765554
No 59
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=34.42 E-value=14 Score=27.74 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.4
Q ss_pred HHHHhcccCCCCcchhHHHH
Q 031034 74 VYEANARVRDPVYGCVGAIS 93 (167)
Q Consensus 74 vYEA~aR~rDPVyGcvG~I~ 93 (167)
-.|-..|++|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678899999999986654
No 60
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.43 E-value=1.1e+02 Score=24.90 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 68 DAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..++..
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777776 556666666666666666655433
No 61
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=31.68 E-value=51 Score=31.29 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=23.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 85 VYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+-||-.-| -||++|++|++||+.+|.-..++
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666555 49999999999999988755443
No 62
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.33 E-value=93 Score=23.41 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=8.5
Q ss_pred HHHHhchhhHHHHh
Q 031034 45 VHKVFGASNVNKML 58 (167)
Q Consensus 45 vhkvFG~snv~kmL 58 (167)
.+-+||..++.+..
T Consensus 17 y~l~~g~~G~~~~~ 30 (105)
T PRK00888 17 YSLWFGKNGILDYW 30 (105)
T ss_pred HHHhccCCcHHHHH
Confidence 45667777665544
No 63
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=31.23 E-value=41 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.5
Q ss_pred hhHHHHhhcC--CCcchhHHHHHHHHHHh
Q 031034 52 SNVNKMLQEL--PVHQRGDAVSSMVYEAN 78 (167)
Q Consensus 52 snv~kmL~~l--p~~~R~~a~~SLvYEA~ 78 (167)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688889887 78899999999999995
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=31.12 E-value=93 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
...+..|+.++..|+.+|+..+.++...+..
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4478899999999999999999999865433
No 65
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=30.73 E-value=1.6e+02 Score=20.03 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+....+.+|......|..++.+|..++..
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666655443
No 66
>PRK11239 hypothetical protein; Provisional
Probab=30.44 E-value=85 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.+.+..|+.++..|++|++.++++|..++.
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677999999999999999999987765
No 67
>PRK14626 hypothetical protein; Provisional
Probab=30.28 E-value=74 Score=24.35 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
|-+..+..|.+.+|.++..+|+||+..+..
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 457788899999999999999999876554
No 68
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=30.10 E-value=1.2e+02 Score=17.84 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 95 LQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~ 115 (167)
.|..+...|++|+.+|.+++.
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 466777888888888887764
No 69
>smart00338 BRLZ basic region leucin zipper.
Probab=30.01 E-value=1.5e+02 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.|..|+.++..|+.+...++.++..++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888887777766543
No 70
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.97 E-value=98 Score=25.21 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=41.2
Q ss_pred hhHHHHhhcCCCcch------hHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 52 SNVNKMLQELPVHQR------GDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 52 snv~kmL~~lp~~~R------~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
+-|++.|++++|.++ +-++..-|-|.--=+..-.-|.-++|..|..|+.....||..-+.+-
T Consensus 49 ~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~h 116 (140)
T KOG4098|consen 49 KLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKDH 116 (140)
T ss_pred HHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777888877665 22333334444444555566778888888888888888888777653
No 71
>PRK14625 hypothetical protein; Provisional
Probab=29.85 E-value=68 Score=24.68 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
-+..+.+|.+.+|.++..+|+||+.....
T Consensus 3 nm~~mmkqaq~mQ~km~~~Q~el~~~~v~ 31 (109)
T PRK14625 3 DLGGLMKQAQAMQQKLADAQARLAETTVE 31 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 36778899999999999999999877654
No 72
>smart00150 SPEC Spectrin repeats.
Probab=29.67 E-value=1.7e+02 Score=19.29 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 82 RDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.+++.+.+..|..+..+.+.++.++...+..+..+...
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNEL 60 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35666888899999999999999999888888766544
No 73
>PRK10963 hypothetical protein; Provisional
Probab=29.50 E-value=1.5e+02 Score=24.69 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=35.8
Q ss_pred hhHHHHhhcCCC--cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 52 SNVNKMLQELPV--HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 52 snv~kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
..|...|++=|. .++++.+.. -++-.|..| .|+-.+.|++.|++++...+.+|.
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~------L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQ------MRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHh------ccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777665 567777763 466777555 666677777777777776666653
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.34 E-value=1e+02 Score=26.00 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|..|+.+.+.|++||+.+++++..++.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888877755433
No 75
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=29.11 E-value=33 Score=23.24 Aligned_cols=16 Identities=44% Similarity=1.092 Sum_probs=14.6
Q ss_pred CCChhhHHhhhCCCCC
Q 031034 12 SPCAACKLLRRRCAQD 27 (167)
Q Consensus 12 ~~CAACK~lRRrC~~~ 27 (167)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999866
No 76
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.76 E-value=98 Score=17.98 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALA 109 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~ 109 (167)
|..|+..|.+|+.||+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888888764
No 77
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.75 E-value=1.4e+02 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
|.+|++.|..++.++..++.|.+
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666555555555554
No 78
>PRK14623 hypothetical protein; Provisional
Probab=28.57 E-value=74 Score=24.33 Aligned_cols=28 Identities=4% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+..+..|.+.+|.++..+|+||+.....
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6778899999999999999999877654
No 79
>PRK11677 hypothetical protein; Provisional
Probab=28.57 E-value=57 Score=26.00 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Q 031034 85 VYGCVGAISSLQN--QIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 85 VyGcvG~I~~Lq~--qi~~lq~eLa~~~~el~~~r~~ 119 (167)
|-|.+..-..-.. +...|+.||+.++.||..||..
T Consensus 15 iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 15 IIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
No 80
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.04 E-value=1.2e+02 Score=26.49 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 82 RDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.-|+.|.-..|..|.++.+.+..+++..+++++.-
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999998743
No 81
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.64 E-value=63 Score=28.18 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 031034 88 CVGAISSLQNQIDVLQTQLALA 109 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~ 109 (167)
..--|..||.+|..|++|||.+
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999985
No 82
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.57 E-value=94 Score=27.39 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHHHhhcCCC-cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 031034 54 VNKMLQELPV-HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLAL 108 (167)
Q Consensus 54 v~kmL~~lp~-~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~ 108 (167)
+.+||+-+|+ .+|+.+|+.|--+-+.|.+ .|.+||.+|...+.-|+.
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHH
Confidence 4455665665 4688999988665555543 599999999887655543
No 83
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.48 E-value=83 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
...|+++|+..+.||+.-|.++.
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~ 49 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVN 49 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666664
No 84
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=27.44 E-value=1.9e+02 Score=19.73 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|.+...+.++.+....|..++.+|..+.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888887654
No 85
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.93 E-value=1.3e+02 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
-+.-|..++++|.+++.||+.++.++..+..+=
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999998776653
No 86
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.70 E-value=1.4e+02 Score=20.66 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el 113 (167)
|..++.+++.+..++..++..+
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444
No 87
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=26.68 E-value=1e+02 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
.|..||.||+.+++.|..+...|.++-++.
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRD 33 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRD 33 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCC
Confidence 578899999999999999999998876654
No 88
>PLN02281 chlorophyllide a oxygenase
Probab=26.64 E-value=90 Score=30.28 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=38.2
Q ss_pred CCCcchhHHHHHHH-HHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 61 LPVHQRGDAVSSMV-YEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 61 lp~~~R~~a~~SLv-YEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
++=.-|.|...-|+ -+--.-+.||..-=+-.|-.|..+|..||+||+.+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (536)
T PLN02281 91 LDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQV 144 (536)
T ss_pred ccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445666655543 333345667887778888899999999999999988876
No 89
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.58 E-value=94 Score=24.84 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHhc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 71 SSMVYEANA-RVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 71 ~SLvYEA~a-R~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
..+.-|.++ -.+| =+.--.+|+++++.+++||+..++++...+..
T Consensus 50 ~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 50 LQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp HHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445444 4444 46667789999999999999999988765553
No 90
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.45 E-value=1.2e+02 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.|..|+.++..++.++..++++++.+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888888888888887777654
No 91
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=26.17 E-value=87 Score=20.11 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHhchhhHHHHhhcCCCcc
Q 031034 34 FPADEPQKFANVHKVFGASNVNKMLQELPVHQ 65 (167)
Q Consensus 34 FPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~ 65 (167)
||+++.+--..+.+-=--..|+..|+.||+.+
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78885555555555444567899999999644
No 92
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=2.6e+02 Score=20.37 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..+.-|+.++.+|..+-+++...
T Consensus 33 Eq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 33 EQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444433
No 93
>PRK14622 hypothetical protein; Provisional
Probab=25.71 E-value=86 Score=23.67 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+..|.+|.+.+|.++..+|++|+....-
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v~ 30 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAVE 30 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 5678899999999999999999876554
No 94
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.16 E-value=1.3e+02 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 031034 97 NQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 97 ~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
++...|+.||+.++.||..+|..
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999988874
No 95
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=25.15 E-value=1.8e+02 Score=19.28 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
.+..|..|+..|++-|+.+.+.|..
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3677888888888888888777753
No 96
>PRK14624 hypothetical protein; Provisional
Probab=25.06 E-value=92 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
-+..+.+|.+..|.++..+|++|+..+..-
T Consensus 7 nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g 36 (115)
T PRK14624 7 NMSEALSNMGNIREKMEEVKKRIASIRVVG 36 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 367788899999999999999998776543
No 97
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=24.97 E-value=1.3e+02 Score=22.95 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~ 111 (167)
++.|..||+.||.+|..+..
T Consensus 4 ~s~I~~eIekLqe~lk~~e~ 23 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAET 23 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777888888877776655
No 98
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=24.93 E-value=92 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTAS 123 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~~ 123 (167)
.++|+++|..++.||..+|+++...
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~ 31 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATG 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677788888888888888765433
No 99
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.89 E-value=1.4e+02 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.+++.|..|+.+|..++.++...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777666543
No 100
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.80 E-value=1.4e+02 Score=24.65 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=21.5
Q ss_pred hhHHHHhhcCCC--cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 52 SNVNKMLQELPV--HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 52 snv~kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..|...|++=|+ .+.++++..|- +..|. -|.|+-.+.|++.|+++....+.+|..+
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555655554 56667766653 44553 2688888999999988888888877544
No 101
>PF14623 Vint: Hint-domain
Probab=24.39 E-value=17 Score=29.96 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=27.6
Q ss_pred HHHHhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcch
Q 031034 45 VHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGC 88 (167)
Q Consensus 45 vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGc 88 (167)
+|.+||...|.+-|..|+.-.-. +.+...-.|||..|-
T Consensus 122 aH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 122 AHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred eecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 69999999999999999874322 334445578887663
No 102
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=24.33 E-value=1.1e+02 Score=24.87 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 031034 97 NQIDVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 97 ~qi~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
-+|=.|+.||..++..|..+|-..+.
T Consensus 125 v~iL~lE~eLe~ar~kL~~lRk~~Y~ 150 (152)
T PF01608_consen 125 VRILKLEKELEKARKKLAELRKAHYH 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556788999999999999877654
No 103
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.30 E-value=2.4e+02 Score=19.22 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 031034 68 DAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALA 109 (167)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~ 109 (167)
+...-+.-|=.+|..|+- |+---|..|..+...|+++|...
T Consensus 8 ELe~klkaerE~R~~d~~-~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 8 ELERKLKAEREARSLDRS-AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHhHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888873 44445555555555555555443
No 104
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.83 E-value=2e+02 Score=19.18 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
|..|+.++..|+.+...++.++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443
No 105
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.53 E-value=1.9e+02 Score=21.48 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.+..|+++++.+++++..++..+..++.
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666554443
No 106
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=23.50 E-value=1.1e+02 Score=20.49 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
.++|+.+|..++.||..+|++...
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~ 32 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKAT 32 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777776543
No 107
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=23.43 E-value=49 Score=20.36 Aligned_cols=15 Identities=20% Similarity=0.758 Sum_probs=10.0
Q ss_pred CCChhhHHhhhCCCC
Q 031034 12 SPCAACKLLRRRCAQ 26 (167)
Q Consensus 12 ~~CAACK~lRRrC~~ 26 (167)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 368889998888875
No 108
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.22 E-value=1.5e+02 Score=23.53 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
-+..+++|++.|++||..++..+..+
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777766666554
No 109
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.16 E-value=1.8e+02 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.|+++|..+-.|-+.++-|..++|.
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334434444443
No 110
>PRK00587 hypothetical protein; Provisional
Probab=22.82 E-value=1.1e+02 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+..|..|.+.+|.++..+|+||+.....
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~v~ 30 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKEFD 30 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 4678889999999999999999877654
No 111
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.75 E-value=1.5e+02 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
-|..|+..+..|+.+|..++.+|...
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777766543
No 112
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.75 E-value=2.2e+02 Score=19.58 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+.|..|...|..++.++..++.++...
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555433
No 113
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.62 E-value=1.7e+02 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=15.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 031034 85 VYGCVGAISSLQNQIDVLQTQL 106 (167)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eL 106 (167)
|-..+-.|..||.+++.|+.+-
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888763
No 114
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.45 E-value=1.4e+02 Score=22.26 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.|+.+++.++.++..+++++..+...
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~ 28 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRAL 28 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544443
No 115
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.11 E-value=1.5e+02 Score=25.96 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcccCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 67 GDAVSSMVYEANARVRDP-VYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 67 ~~a~~SLvYEA~aR~rDP-VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
..++++++-+++..+.+= .--.-..+..+++|+..++.+|..++.+|..+|.+.
T Consensus 146 ~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 146 QKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666644343332220 000235667899999999999999999999887764
No 116
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.10 E-value=1.3e+02 Score=25.80 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
.-|..||++|..|+=+++..+.+|..+..+|
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665544443
No 117
>PLN02742 Probable galacturonosyltransferase
Probab=21.87 E-value=3.2e+02 Score=26.67 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=39.6
Q ss_pred cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 64 HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 64 ~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+++-..|..++++|..- -|.|-.++.+|.+.|..++.|+..++.+-+.+
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~ 180 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQSTKF 180 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888654 45699999999999999999999888766544
No 118
>PRK03762 hypothetical protein; Provisional
Probab=21.84 E-value=1.4e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
...+..|.+..|.+++.+|++|.....
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~v 33 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKEF 33 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 456777888899999999999986544
No 119
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.82 E-value=1.7e+02 Score=24.61 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHhcccCCCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 75 YEANARVRDPVYGCVG---AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 75 YEA~aR~rDPVyGcvG---~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+.+-.+..+.+.+.+. .+..++.+.+.|++|++.+++++..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 51 QRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443 34556777778888777777766644
No 120
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.76 E-value=1.6e+02 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 95 LQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~ 114 (167)
++++++.|++|...++.|.+
T Consensus 28 a~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 121
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.64 E-value=2e+02 Score=26.16 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=24.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 85 VYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|+.--|-+.+...+|+.|+.+|...+.||.+.
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555777788888888888888888888643
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.58 E-value=1.6e+02 Score=24.59 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
.-|-.|+++|.+++.+|..++.|...++..|
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999888887666544
No 123
>COG5393 Predicted membrane protein [Function unknown]
Probab=21.09 E-value=1.1e+02 Score=24.69 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=26.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 85 VYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
|.|..|.||.|.+-++.. -+..+++||++.|..
T Consensus 94 vl~~i~ciW~lrks~~s~--l~~aT~~ELanDRe~ 126 (131)
T COG5393 94 VLALIGCIWTLRKSRKST--LLRATRHELANDREL 126 (131)
T ss_pred HHHHHHHHHHHHHHHhHh--HHHHHHHHHhhhHHh
Confidence 347789999999988776 778888999888753
No 124
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.05 E-value=1.8e+02 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|..|..++.+|+.|++.++..++..
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444433
No 125
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.99 E-value=1.8e+02 Score=23.37 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
..++++...+++.++.++.++.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 126
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=20.97 E-value=1.4e+02 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
-+..+..|.+.+|.++..+|.||...+..
T Consensus 6 n~~~m~kqaq~mQ~k~~~~q~eL~~~~v~ 34 (102)
T TIGR00103 6 NLGELMKQAQQMQEKMKKLQEEIAQFEVT 34 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 46778888999999999999999876654
No 127
>PRK14621 hypothetical protein; Provisional
Probab=20.95 E-value=1.3e+02 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
-+..+..|.+..|+++..+|++|.....-
T Consensus 5 nm~~mmkqaq~mQ~km~~~Q~eL~~~~v~ 33 (111)
T PRK14621 5 NLGDMMKQIQQAGEKMQDVQKQLEKLVAH 33 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccEEE
Confidence 36788899999999999999999866554
No 128
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.82 E-value=3.3e+02 Score=23.50 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC---CCCCCCCCCC
Q 031034 80 RVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL---SSHGFGPASP 134 (167)
Q Consensus 80 R~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~---~~~~~~p~~~ 134 (167)
|..|=|+-.-.-+..++..|..|.++|..=.+-|..++.+..... ....+.|+.+
T Consensus 126 r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~k~s~~slrpA~s 183 (205)
T PF12240_consen 126 REEEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKDPGKASQGSLRPARS 183 (205)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccCCCCCCC
Confidence 444666666677888888899999988888888877766655443 2334555544
No 129
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.78 E-value=2.2e+02 Score=21.67 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+-.|..|.+||..+-+++..++.++..+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=1.4e+02 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=28.4
Q ss_pred HHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 76 EANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 76 EA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|-..|.+|+ =-.-.+.++|+++..|++|....++.+..++
T Consensus 45 ~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 45 ESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred cchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 4456678888888888888888888887666
No 131
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=1.3e+02 Score=23.97 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 031034 98 QIDVLQTQLALAQAEVVHLRVRQT 121 (167)
Q Consensus 98 qi~~lq~eLa~~~~el~~~r~~q~ 121 (167)
..++|+.||..++.||+.+|++..
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K~ 36 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAKV 36 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777777777777777777753
No 132
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=20.64 E-value=1.2e+02 Score=21.29 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
.++|+.+|...+.||..+|.++..
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~ 37 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAM 37 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888876544
No 133
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.23 E-value=1.5e+02 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.|..|+.+|+.++.+|+.+++++..+..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888887665544
Done!