Query 031034
Match_columns 167
No_of_seqs 137 out of 316
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 89.2 0.65 2.2E-05 27.9 4.2 29 89-117 1-29 (33)
2 2er8_A Regulatory protein Leu3 81.7 2.8 9.5E-05 27.3 4.9 21 90-110 49-69 (72)
3 1nkp_B MAX protein, MYC proto- 68.3 9 0.00031 26.2 4.9 32 88-119 45-76 (83)
4 2qdq_A Talin-1; dimerisation d 65.9 13 0.00046 24.4 5.0 31 95-125 13-43 (50)
5 3r4h_A Coiled coil helix CC-TE 64.4 11 0.00039 22.6 4.0 28 90-117 2-29 (34)
6 4e61_A Protein BIM1; EB1-like 62.5 12 0.00043 27.8 4.9 31 87-117 1-31 (106)
7 1zme_C Proline utilization tra 62.2 7.3 0.00025 25.0 3.2 26 89-114 43-68 (70)
8 3ra3_B P2F; coiled coil domain 57.6 13 0.00044 21.5 3.3 25 92-116 2-26 (28)
9 1am9_A Srebp-1A, protein (ster 57.1 18 0.00063 24.8 4.8 27 89-115 49-75 (82)
10 2dgc_A Protein (GCN4); basic d 54.0 23 0.00079 23.5 4.7 30 90-119 30-59 (63)
11 2ke4_A CDC42-interacting prote 52.4 41 0.0014 24.3 6.1 43 74-117 47-89 (98)
12 3nmd_A CGMP dependent protein 50.8 23 0.0008 24.7 4.4 28 90-117 40-67 (72)
13 3efg_A Protein SLYX homolog; x 49.8 11 0.00038 26.2 2.7 26 92-117 30-55 (78)
14 1hlo_A Protein (transcription 49.5 17 0.00058 24.7 3.5 24 89-112 56-79 (80)
15 2zvf_A Alanyl-tRNA synthetase; 48.9 54 0.0019 24.3 6.6 48 71-118 13-60 (171)
16 2xdj_A Uncharacterized protein 48.0 22 0.00074 25.1 4.0 23 91-113 21-43 (83)
17 2l5g_B Putative uncharacterize 47.4 28 0.00095 22.1 3.9 27 94-120 6-32 (42)
18 1uuj_A Platelet-activating fac 44.9 9.3 0.00032 27.6 1.6 25 91-115 59-83 (88)
19 1dh3_A Transcription factor CR 44.3 39 0.0013 21.8 4.5 27 91-117 23-49 (55)
20 1rtm_1 Mannose-binding protein 44.0 24 0.00083 25.2 3.8 20 92-111 6-25 (149)
21 2wg5_A General control protein 43.7 26 0.00087 25.4 3.9 29 92-120 9-37 (109)
22 1wlx_A Alpha-actinin 4; three- 42.4 1.1E+02 0.0037 23.2 7.7 53 64-116 18-71 (129)
23 2z5i_A TM, general control pro 41.9 45 0.0016 21.4 4.5 29 90-118 12-40 (52)
24 1nlw_A MAD protein, MAX dimeri 41.1 48 0.0017 22.8 4.9 30 89-118 46-75 (80)
25 1a93_B MAX protein, coiled coi 40.6 41 0.0014 20.4 3.8 23 92-114 9-31 (34)
26 2yy0_A C-MYC-binding protein; 40.2 48 0.0017 21.4 4.4 26 92-117 21-46 (53)
27 2yy0_A C-MYC-binding protein; 39.8 28 0.00094 22.6 3.2 25 91-115 27-51 (53)
28 1zxa_A CGMP-dependent protein 38.7 45 0.0015 22.8 4.3 25 92-116 27-51 (67)
29 1buu_A Protein (mannose-bindin 36.7 28 0.00094 25.7 3.2 21 91-111 24-44 (168)
30 1urf_A Protein kinase C-like 1 36.5 88 0.003 22.3 5.6 19 49-67 25-43 (81)
31 3myf_A Sensor protein; HPT, hi 36.3 1.1E+02 0.0036 21.9 6.3 64 40-111 51-114 (119)
32 2wt7_A Proto-oncogene protein 36.2 58 0.002 21.2 4.4 25 92-116 25-49 (63)
33 3pbf_A Pulmonary surfactant-as 34.8 30 0.001 24.5 3.0 24 91-114 3-26 (148)
34 1t2k_D Cyclic-AMP-dependent tr 34.3 77 0.0026 20.3 4.7 23 94-116 33-55 (61)
35 3azd_A Short alpha-tropomyosin 32.7 10 0.00034 23.1 0.2 26 91-116 5-30 (37)
36 1gk6_A Vimentin; intermediate 32.3 58 0.002 21.1 3.9 21 94-114 4-24 (59)
37 1ci6_A Transcription factor AT 32.3 73 0.0025 20.9 4.4 26 92-117 32-57 (63)
38 3mud_A DNA repair protein XRCC 31.8 64 0.0022 25.9 4.8 44 63-117 119-162 (175)
39 1dip_A Delta-sleep-inducing pe 31.0 1.4E+02 0.0048 21.1 6.8 20 95-114 20-39 (78)
40 1t2k_D Cyclic-AMP-dependent tr 31.0 90 0.0031 20.0 4.7 28 91-118 23-50 (61)
41 3twe_A Alpha4H; unknown functi 30.9 73 0.0025 18.1 3.6 21 93-113 4-24 (27)
42 1hjb_A Ccaat/enhancer binding 30.5 72 0.0025 22.6 4.4 28 91-118 44-71 (87)
43 2k48_A Nucleoprotein; viral pr 30.2 66 0.0023 24.0 4.3 26 89-114 34-59 (107)
44 1gu4_A CAAT/enhancer binding p 29.6 76 0.0026 22.0 4.4 28 91-118 44-71 (78)
45 1x8y_A Lamin A/C; structural p 29.5 73 0.0025 22.1 4.3 25 91-115 29-53 (86)
46 1jnm_A Proto-oncogene C-JUN; B 29.2 1E+02 0.0035 19.8 4.7 27 91-117 23-49 (62)
47 1gd2_E Transcription factor PA 28.7 96 0.0033 21.1 4.7 24 91-114 30-53 (70)
48 2wt7_B Transcription factor MA 28.5 81 0.0028 22.6 4.4 64 54-117 11-82 (90)
49 1dip_A Delta-sleep-inducing pe 28.5 1E+02 0.0036 21.7 4.9 33 90-122 22-54 (78)
50 3kqg_A Langerin, C-type lectin 28.2 87 0.003 22.8 4.8 25 90-114 16-40 (182)
51 1kd8_B GABH BLL, GCN4 acid bas 28.2 1.1E+02 0.0036 18.8 4.4 27 92-118 3-29 (36)
52 2k48_A Nucleoprotein; viral pr 28.2 65 0.0022 24.1 3.9 22 90-111 82-103 (107)
53 2wt7_A Proto-oncogene protein 28.2 94 0.0032 20.2 4.4 28 90-117 30-57 (63)
54 3i00_A HIP-I, huntingtin-inter 28.2 82 0.0028 23.5 4.6 21 90-110 40-60 (120)
55 3viq_B Mating-type switching p 28.1 37 0.0013 24.3 2.5 20 92-111 10-29 (85)
56 1jcd_A Major outer membrane li 28.0 87 0.003 20.3 4.1 20 94-113 22-41 (52)
57 1gk4_A Vimentin; intermediate 28.0 81 0.0028 21.6 4.3 23 92-114 28-50 (84)
58 2ic6_A Nucleocapsid protein; h 27.3 74 0.0025 22.5 3.9 22 90-111 52-73 (78)
59 3u1c_A Tropomyosin alpha-1 cha 27.2 84 0.0029 22.3 4.4 27 89-115 43-69 (101)
60 2xv5_A Lamin-A/C; structural p 27.2 88 0.003 21.4 4.3 23 92-114 7-29 (74)
61 1ic2_A Tropomyosin alpha chain 27.0 91 0.0031 21.1 4.4 45 66-114 21-65 (81)
62 2yny_A General control protein 26.6 97 0.0033 23.0 4.7 29 89-117 75-103 (106)
63 3uul_A Utrophin; spectrin repe 26.5 87 0.003 20.9 4.2 46 74-119 18-65 (118)
64 2ic6_A Nucleocapsid protein; h 26.5 72 0.0025 22.5 3.8 26 89-114 4-29 (78)
65 3v2d_2 50S ribosomal protein L 25.9 55 0.0019 22.3 3.0 25 99-123 18-42 (72)
66 3viq_B Mating-type switching p 25.7 95 0.0032 22.1 4.3 27 93-119 4-30 (85)
67 3ol1_A Vimentin; structural ge 25.7 1E+02 0.0036 22.4 4.7 28 90-117 20-47 (119)
68 2pbi_A Regulator of G-protein 25.6 46 0.0016 29.5 3.2 70 38-107 142-236 (424)
69 1vq8_V 50S ribosomal protein L 25.3 58 0.002 22.1 3.0 23 100-122 15-37 (71)
70 1ef1_C Moesin; membrane, FERM 25.1 24 0.00082 25.5 1.1 18 93-110 29-46 (90)
71 1ybx_A Conserved hypothetical 25.0 46 0.0016 25.7 2.7 31 90-120 41-71 (143)
72 3trt_A Vimentin; cytoskeleton, 24.9 67 0.0023 21.2 3.3 17 92-108 58-74 (77)
73 1r73_A TM1492, 50S ribosomal p 24.6 64 0.0022 21.5 3.1 23 100-122 12-34 (66)
74 3j21_W 50S ribosomal protein L 24.4 63 0.0022 21.9 3.1 25 99-123 11-35 (72)
75 3r8s_Y 50S ribosomal protein L 24.4 50 0.0017 21.8 2.5 24 99-122 11-34 (63)
76 2ic9_A Nucleocapsid protein; h 24.2 86 0.003 22.9 3.9 22 90-111 52-73 (96)
77 4emc_A Monopolin complex subun 23.7 1E+02 0.0034 25.1 4.6 10 67-76 19-28 (190)
78 1slq_A VP4; beta sandwich, gre 23.5 42 0.0014 28.6 2.4 35 82-116 234-268 (278)
79 3r6n_A Desmoplakin; spectrin r 23.5 1.2E+02 0.004 27.0 5.5 38 88-125 233-270 (450)
80 2ic9_A Nucleocapsid protein; h 23.4 74 0.0025 23.3 3.4 25 90-114 5-29 (96)
81 1uii_A Geminin; human, DNA rep 23.3 99 0.0034 22.1 4.0 26 92-117 48-73 (83)
82 1x4t_A Hypothetical protein LO 23.2 1.6E+02 0.0054 21.4 5.1 41 78-119 41-81 (92)
83 2w6a_A ARF GTPase-activating p 23.1 1.1E+02 0.0039 20.7 4.1 23 95-117 39-61 (63)
84 1yhn_B RILP, RAB interacting l 23.0 1.3E+02 0.0044 20.6 4.4 25 95-119 8-32 (65)
85 3ra3_A P1C; coiled coil domain 22.9 77 0.0026 18.2 2.7 23 94-116 4-26 (28)
86 3swk_A Vimentin; cytoskeleton, 22.9 87 0.003 21.8 3.6 27 92-118 2-28 (86)
87 1nkp_A C-MYC, MYC proto-oncoge 22.9 1.5E+02 0.005 20.5 4.9 29 89-117 51-79 (88)
88 1nkp_B MAX protein, MYC proto- 22.7 90 0.0031 21.0 3.6 27 90-116 54-80 (83)
89 4fi5_A Nucleoprotein; structur 22.5 96 0.0033 23.3 4.0 24 91-114 23-46 (113)
90 1rtm_1 Mannose-binding protein 22.2 99 0.0034 21.8 4.0 25 95-119 2-26 (149)
91 1avy_A Fibritin, gpwac M; bact 22.2 2.1E+02 0.007 20.0 5.4 27 92-118 17-43 (74)
92 3edu_A Beta-I spectrin, spectr 22.2 62 0.0021 24.5 3.0 46 74-119 124-169 (218)
93 3mq7_A Bone marrow stromal ant 21.9 1.2E+02 0.004 23.1 4.4 29 91-119 72-100 (121)
94 1buu_A Protein (mannose-bindin 21.7 95 0.0033 22.7 3.9 31 88-118 14-44 (168)
95 1pwb_A SP-D, PSP-D, pulmonary 21.4 1E+02 0.0035 22.6 4.0 20 92-111 33-52 (177)
96 3mov_A Lamin-B1; LMNB1, B-type 21.3 1.2E+02 0.004 21.6 4.1 40 68-114 22-61 (95)
97 3lbx_A Spectrin alpha chain, e 21.2 1.5E+02 0.0051 21.9 4.9 53 72-124 70-122 (161)
98 3uun_A Dystrophin; triple heli 21.1 75 0.0026 21.2 3.0 38 82-119 28-65 (119)
99 3m91_A Proteasome-associated A 20.9 1.7E+02 0.0057 18.8 4.4 26 93-118 19-44 (51)
100 1c94_A Retro-GCN4 leucine zipp 20.9 1E+02 0.0034 18.8 3.1 27 91-117 10-36 (38)
101 3tnu_B Keratin, type II cytosk 20.8 1.2E+02 0.0041 22.1 4.3 25 91-115 76-100 (129)
102 3c3f_A Alpha/beta peptide with 20.8 1.5E+02 0.0051 17.9 4.4 27 92-118 3-29 (34)
103 3i00_A HIP-I, huntingtin-inter 20.7 1.4E+02 0.0048 22.2 4.6 52 62-117 9-60 (120)
104 2xdj_A Uncharacterized protein 20.7 1.4E+02 0.0047 20.9 4.3 29 90-118 27-55 (83)
105 1wlq_A Geminin; coiled-coil; 2 20.4 1.1E+02 0.0038 21.8 3.8 26 92-117 40-65 (83)
106 3w03_C DNA repair protein XRCC 20.4 1.4E+02 0.0048 23.9 4.9 30 87-116 149-178 (184)
107 4fi5_A Nucleoprotein; structur 20.3 1E+02 0.0036 23.1 3.8 22 90-111 69-90 (113)
108 3e98_A GAF domain of unknown f 20.0 83 0.0028 25.7 3.5 52 53-113 35-88 (252)
109 2lw1_A ABC transporter ATP-bin 20.0 1.4E+02 0.0049 20.4 4.3 23 94-116 19-41 (89)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=89.19 E-value=0.65 Score=27.90 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.|.|-.|+++|..|+.|++.++-||+.+.
T Consensus 1 ~geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 1 XGEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998664
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=81.66 E-value=2.8 Score=27.32 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQ 110 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ 110 (167)
+.|..|+++|+.|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777776544
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.34 E-value=9 Score=26.16 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.+-.|..|+.++..++.++..++.+...++.+
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999998888776554
No 4
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=65.89 E-value=13 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 031034 95 LQNQIDVLQTQLALAQAEVVHLRVRQTASLS 125 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~~ 125 (167)
-|..|=..+.||..|+..|+++|..++...+
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~kY~~~~ 43 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQYKFLP 43 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3555667788999999999999999887643
No 5
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=64.38 E-value=11 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.487 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|.+-.+++++..++.||+.++-||+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888887664
No 6
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=62.55 E-value=12 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 87 GCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|..|.+..||.++...+.+++.+++++..++
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777777765443
No 7
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.25 E-value=7.3 Score=24.95 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
-+.|..|+.+|..|+.+|+.++..|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999998887664
No 8
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.62 E-value=13 Score=21.47 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|..|++....|++|++.+.-||+.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888999999999988888755
No 9
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.05 E-value=18 Score=24.83 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
+-.|..||.++..|+.++..++.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999988887754
No 10
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.04 E-value=23 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
..+..|+.++..|+.+...+.+++..++..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999988888877653
No 11
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.36 E-value=41 Score=24.28 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.9
Q ss_pred HHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 74 VYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 74 vYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+|+.+-=.-||-.= -+-|...-..|+.|+++|...+..|+.+.
T Consensus 47 vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 47 VYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78877766666543 67777888888888888888887777553
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.85 E-value=23 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
..|..|+.+|+....++..++.+|-.+|
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777777777777776654
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.80 E-value=11 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|-.|...|..-+.+|...+.++..+.
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 14
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.48 E-value=17 Score=24.70 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAE 112 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~e 112 (167)
+-.|..|+++++.|+.++..++.|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556888888888888777776643
No 15
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.90 E-value=54 Score=24.29 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 71 SSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 71 ~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..++.+....+.-|..--...|..|+.++..++.|++.++.+++....
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~ 60 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWA 60 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444567777888888888888888888888876643
No 16
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.98 E-value=22 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
.+..|++||+.++.|++.++.++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 45677777777777776666554
No 17
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.35 E-value=28 Score=22.12 Aligned_cols=27 Identities=15% Similarity=0.442 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
.|-|+|+.+-.|++.++++|..++.++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888776654
No 18
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=44.88 E-value=9.3 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
.|-.||.+|.+|+++++.+++||..
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667999999999999999999863
No 19
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=44.31 E-value=39 Score=21.78 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.|..|+.++..|+.|...++.++..++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888887654
No 20
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=44.01 E-value=24 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~ 111 (167)
|..|+.+++.|+.+|..++.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444555555554444443
No 21
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.69 E-value=26 Score=25.39 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
..+|+.++..++.|+..++.||..++.+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999999888764
No 22
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=42.37 E-value=1.1e+02 Score=23.16 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHHhcccCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 64 HQRGDAVSSMVYEANARVRDPVY-GCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 64 ~~R~~a~~SLvYEA~aR~rDPVy-GcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
-+|...+++=+-.|.-=+.|||. ..+--|..|+..-+..++.|..+++++..+
T Consensus 18 AKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i 71 (129)
T 1wlx_A 18 AKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAI 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47888999999999999999999 789999999999999999999999988766
No 23
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.91 E-value=45 Score=21.43 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..|.+||..|+.|+.+|...+.+...++.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35789999999999999998887766554
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.08 E-value=48 Score=22.77 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
+-.|..|+++...++.+...++.+...++.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999888888888766543
No 25
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.63 E-value=41 Score=20.44 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+...|+.|++++.|-+.+..|+-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 56778888888888888887774
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.16 E-value=48 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+-.|+.++..|+++++.+++++..++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665443
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.84 E-value=28 Score=22.57 Aligned_cols=25 Identities=4% Similarity=0.232 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
-+..|+.+++.|+.+++.++++|..
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888888888887753
No 28
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.73 E-value=45 Score=22.85 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|..|+..++.-..++..++.+|.++
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 29
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=36.73 E-value=28 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
.|..|+.+|..|+.+|..++.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555444
No 30
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=36.47 E-value=88 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.8
Q ss_pred hchhhHHHHhhcCCCcchh
Q 031034 49 FGASNVNKMLQELPVHQRG 67 (167)
Q Consensus 49 FG~snv~kmL~~lp~~~R~ 67 (167)
=|+.|+++++..-+..+|.
T Consensus 25 ~GAENmi~~y~~g~~~drK 43 (81)
T 1urf_A 25 QGAENMIQTYSNGSTKDRK 43 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHcCCchhHH
Confidence 5999999999988877763
No 31
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=36.34 E-value=1.1e+02 Score=21.92 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 031034 40 QKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 40 ~~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
+-+..+||+-|++..+.. |. -..-+...|...|..+|+-..-..+..|..+|..+..++....+
T Consensus 51 ~l~~~aHkLkGaa~~~Ga----~~----L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGV----PT----TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHHHHHHTTTTC----HH----HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH----HH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888887765432 10 11222345666777777766667777777777666666555443
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.17 E-value=58 Score=21.23 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
|..|+.++..|+.+-..++.+|..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 33
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=34.79 E-value=30 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
++-.|+++|..|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999988888883
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.25 E-value=77 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.|..+...|+.++..++.|+..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555554443
No 35
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.72 E-value=10 Score=23.05 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.|..++..|..++.|+..++.++...
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777776544
No 36
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=32.34 E-value=58 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~ 114 (167)
.+|..|..++++|..++++++
T Consensus 4 ~~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.25 E-value=73 Score=20.88 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+..|..+...|+.++..++.|+..++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665443
No 38
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=31.82 E-value=64 Score=25.87 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=34.7
Q ss_pred CcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 63 VHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 63 ~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.+.|.++++-|+=.| ...|..||.+|+.|+.+|...+.+...++
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777654 56789999999999999999888776554
No 39
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.04 E-value=1.4e+02 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 95 LQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~ 114 (167)
|+.+|.+|......+..|-.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444433
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.00 E-value=90 Score=20.01 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.+..|+.++..|+.+...++.++..++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766654
No 41
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.87 E-value=73 Score=18.15 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el 113 (167)
-.|..+++.||+.|..++..|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888887776655
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.55 E-value=72 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
-+..|+.+...|+.++..++.|+..++.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888776654
No 43
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.15 E-value=66 Score=24.03 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
.+-|-.||.+|...+.||..++..|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999885
No 44
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.65 E-value=76 Score=22.00 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
-+..|..+-..|+.++..++.|+..++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888887764
No 45
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.55 E-value=73 Score=22.05 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
.+..+|.+|..++.+|+.+++++..
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777653
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.21 E-value=1e+02 Score=19.81 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.|..|+.++..|+.+-..++.++..++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554443
No 47
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.72 E-value=96 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
.|..|+.+|..|+.....+.+|..
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~ 53 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLEND 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444433
No 48
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.55 E-value=81 Score=22.62 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHhhcCCCc------chhHHHHHHHHHHhcccC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 54 VNKMLQELPVH------QRGDAVSSMVYEANARVR--DPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 54 v~kmL~~lp~~------~R~~a~~SLvYEA~aR~r--DPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+..+|..|+.+ +|..+..-=.|-+++|.+ +-+..--.-+..|+.+++.|+.|++.++.|+..++
T Consensus 11 LN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 11 LNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 445556666888888865 33333334455555555555555555555554443
No 49
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.46 E-value=1e+02 Score=21.73 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
-.|..|..++..|+.|-..++.-...-...|++
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q 54 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 468889999999999999888766444344433
No 50
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.24 E-value=87 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
..+..|+.+|+.||.+|..++..|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666554
No 51
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.22 E-value=1.1e+02 Score=18.80 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..+|...+++|-.+...+++|+++++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457777888888888888888877654
No 52
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.22 E-value=65 Score=24.08 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
+.|..||..|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776654
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.21 E-value=94 Score=20.18 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.-+..|+.+...|+.++..++.|+..++
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777888888888777776654
No 54
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.20 E-value=82 Score=23.48 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQ 110 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ 110 (167)
-+|..|+.+|..|++||+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357888889988888888865
No 55
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.14 E-value=37 Score=24.33 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~ 111 (167)
|..|+.++..|+.++..+.+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444443
No 56
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.05 E-value=87 Score=20.33 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el 113 (167)
.|+.++..++.++..+++|-
T Consensus 22 qLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 22 QASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.98 E-value=81 Score=21.61 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+..+|..|..++.+|..++++++
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665
No 58
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.27 E-value=74 Score=22.46 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
+.|..||..|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888777776654
No 59
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.21 E-value=84 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
=.-|..|+..|..++.+|..++..|..
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888887777777653
No 60
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.16 E-value=88 Score=21.44 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
...+|.+|..++.+|..++++++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666555554
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.03 E-value=91 Score=21.10 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 66 RGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 66 R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
|.+.+..-+-+++.|. --.-.-|..|+..|..++.+|..++..|.
T Consensus 21 ~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 21 RAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443 11234567777777777777777776664
No 62
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=26.58 E-value=97 Score=22.99 Aligned_cols=29 Identities=7% Similarity=0.346 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
-+.|..+..+|..+..++..++.||+++.
T Consensus 75 d~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 75 NTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888764
No 63
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.55 E-value=87 Score=20.94 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHHhcc--cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 74 VYEANAR--VRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 74 vYEA~aR--~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+-|+... ..+||.+-+-.|..+..+...++.+|..-+..+..+...
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 457999999999999999999999999988888665443
No 64
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.47 E-value=72 Score=22.52 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
.+-|-.||.+|...+.||..++..|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLk 29 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK 29 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999998885
No 65
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=25.90 E-value=55 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTAS 123 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~~ 123 (167)
.++|+.+|..++.||..+|+++...
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888899998888886544
No 66
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.66 E-value=95 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 93 SSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
..|+..|..|+++++.+..+|..++.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999877654
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.65 E-value=1e+02 Score=22.39 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+.|..|++||..+..+-+.+..||.+++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888777777766665544
No 68
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=25.63 E-value=46 Score=29.52 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred chHHHHHHHHHhchhhHHHHhhc---CCCcchhHHHHHHHHHHh----cccCCCCcchhHH------------------H
Q 031034 38 EPQKFANVHKVFGASNVNKMLQE---LPVHQRGDAVSSMVYEAN----ARVRDPVYGCVGA------------------I 92 (167)
Q Consensus 38 ~~~~F~~vhkvFG~snv~kmL~~---lp~~~R~~a~~SLvYEA~----aR~rDPVyGcvG~------------------I 92 (167)
+.+.++.+||.|....-.=++|+ +...++.+-..-+|.+.+ .++.-|+.||+-+ +
T Consensus 142 e~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~ 221 (424)
T 2pbi_A 142 EKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTV 221 (424)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCH
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccH
Confidence 34667778888876666656554 344444555566666555 7889999998743 4
Q ss_pred HHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLA 107 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa 107 (167)
..++.+|+.|+.+|.
T Consensus 222 ~~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 222 TAVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 567778888877774
No 69
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=25.30 E-value=58 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 031034 100 DVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 100 ~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
++|+.+|..++.||..+|+++..
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888655
No 70
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=25.13 E-value=24 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031034 93 SSLQNQIDVLQTQLALAQ 110 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~ 110 (167)
.+||.||..|++||+.++
T Consensus 29 k~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 29 ERVQKHLKALTSELANAR 46 (90)
T ss_dssp HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666666666666544
No 71
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=25.01 E-value=46 Score=25.69 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q 120 (167)
|-+..+..|.++.|+++..+|+||+.....-
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg 71 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTVEA 71 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCEEEE
Confidence 4588899999999999999999999776643
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.87 E-value=67 Score=21.22 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLAL 108 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~ 108 (167)
|..|..+|+.|+.||..
T Consensus 58 i~elrr~iq~L~~el~s 74 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444443
No 73
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=24.55 E-value=64 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 031034 100 DVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 100 ~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
++|+.+|..++.||..+|+++..
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~at 34 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAM 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777778777777643
No 74
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.40 E-value=63 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTAS 123 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~~ 123 (167)
.++|+.+|..++.||..+|+++...
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~atg 35 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTMG 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677888888888888888886544
No 75
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=24.36 E-value=50 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 031034 99 IDVLQTQLALAQAEVVHLRVRQTA 122 (167)
Q Consensus 99 i~~lq~eLa~~~~el~~~r~~q~~ 122 (167)
.++|+.+|..++.||..+|+++..
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~at 34 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAAS 34 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788888888888887654
No 76
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.23 E-value=86 Score=22.94 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
+.|..||..|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888887777655
No 77
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.73 E-value=1e+02 Score=25.12 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 031034 67 GDAVSSMVYE 76 (167)
Q Consensus 67 ~~a~~SLvYE 76 (167)
+.++..|+.|
T Consensus 19 d~LV~~L~~E 28 (190)
T 4emc_A 19 DLLVANLVNE 28 (190)
T ss_dssp -CHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555554
No 78
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=23.51 E-value=42 Score=28.59 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 82 RDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+-||--.+-+-..|++||.+|..|...+-+|||.-
T Consensus 234 QTPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA~s 268 (278)
T 1slq_A 234 QTPITNSVTVRQDLERQLGELREEFNALSQEIAMS 268 (278)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCccccchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999744
No 79
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=23.48 E-value=1.2e+02 Score=26.96 Aligned_cols=38 Identities=5% Similarity=0.051 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLS 125 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~~ 125 (167)
-.+.+..|.++...++.+|+.....|..++.+-...++
T Consensus 233 d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~~ 270 (450)
T 3r6n_A 233 PLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQ 270 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35667789999999999999999999988776555544
No 80
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.37 E-value=74 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.330 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+-|-.||.+|...+.||..++..|.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999999888874
No 81
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.29 E-value=99 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.-.|..+|..++.|++..+.++..++
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776665444
No 82
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=23.16 E-value=1.6e+02 Score=21.36 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=30.7
Q ss_pred hcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 78 NARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 78 ~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
-++++||-.|=+ .|..|..+|+.|-.|-..=...|..+-++
T Consensus 41 v~~Iqn~~L~E~-~IRdLNDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 41 VAQIQNAGLGEF-RIRDLNDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHCCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357889988877 78888888888877777766677655444
No 83
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.13 E-value=1.1e+02 Score=20.75 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031034 95 LQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
|.++|..+|.+|..+|.|-..+|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhhc
Confidence 34444444444444444444443
No 84
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=23.05 E-value=1.3e+02 Score=20.60 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 95 LQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.-++-++|++++-.++.||+.||..
T Consensus 8 iLqERNELKa~vf~lqeEL~yY~~e 32 (65)
T 1yhn_B 8 ILQERNELKAKVFLLKEELAYFQRE 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455577888888888888888753
No 85
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.93 E-value=77 Score=18.19 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.|+-+.+.|++.++.++..|+.+
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666544
No 86
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.90 E-value=87 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|..|++||..+..+-+.+..|+-+++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~ 28 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAE 28 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567888888887777777776655443
No 87
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.88 E-value=1.5e+02 Score=20.53 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
+-.|..|+.+...++.++...+.+...++
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888887777766666555443
No 88
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.65 E-value=90 Score=20.97 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..+..|+.+++.|+.+...++++|..+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666543
No 89
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.52 E-value=96 Score=23.35 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
-|-.||.+|...+.||..++..|.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLk 46 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVR 46 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999998874
No 90
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=22.25 E-value=99 Score=21.84 Aligned_cols=25 Identities=0% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 95 LQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 95 Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
|.++|..|+.++..++.+|..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999877653
No 91
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.18 E-value=2.1e+02 Score=20.02 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
|..+.+++..++..|..++.++..+.+
T Consensus 17 iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 17 IASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeccccchhhhhhhhhHHHHh
Confidence 455666677777777777777766655
No 92
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=22.17 E-value=62 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=25.2
Q ss_pred HHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 74 VYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 74 vYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+-|...-+.+|+.+-...|..|+++.+.++.+|+..+.++..++..
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~ 169 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDV 169 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555668888888899999999999999999999888766543
No 93
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.90 E-value=1.2e+02 Score=23.14 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.|..|+-+|..|..+|..+-+|+..+|-.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777777777777777777665543
No 94
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=21.68 E-value=95 Score=22.66 Aligned_cols=31 Identities=3% Similarity=0.112 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
--|.-..+..+|+.|+.+|..++.+|..++.
T Consensus 14 ~~g~~~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 14 DRGDSRAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455567888999999999999999987654
No 95
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=21.43 E-value=1e+02 Score=22.57 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~ 111 (167)
+..|+.+|..|+.+|..++.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666665554
No 96
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.30 E-value=1.2e+02 Score=21.61 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 68 DAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+....-+-|...|... .+..+|..|..++++|..++++++
T Consensus 22 ~~LE~~l~e~E~~~~~-------e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 22 RACLERIQELEDLLAK-------EKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566665433 344555566666666666666554
No 97
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=21.17 E-value=1.5e+02 Score=21.89 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 031034 72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124 (167)
Q Consensus 72 SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~ 124 (167)
+=+.|...-+.|+.||-...|..+.++-+.+++||..-+..+..+.......+
T Consensus 70 ~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li 122 (161)
T 3lbx_A 70 KWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERF 122 (161)
T ss_dssp HHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556665667888899999999999999999999998888876654443333
No 98
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.15 E-value=75 Score=21.18 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=32.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 82 RDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
.+|+.+-+..|..+..+...++.+|..-+..+..+...
T Consensus 28 ~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~ 65 (119)
T 3uun_A 28 QGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQL 65 (119)
T ss_dssp HCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 47999999999999999999999999988888665443
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.94 E-value=1.7e+02 Score=18.83 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 93 SSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..|..+...|-.-|..++.||..++.
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34545555557777777777776654
No 100
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=20.86 E-value=1e+02 Score=18.79 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.+...++++..-+.-|+.++.||..+|
T Consensus 10 klravenelhynkslleevkdelqkmr 36 (38)
T 1c94_A 10 KLRAVENELHYNKSLLEEVKDELQKMR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344556777777788888888887654
No 101
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.83 E-value=1.2e+02 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 91 AISSLQNQIDVLQTQLALAQAEVVH 115 (167)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~~el~~ 115 (167)
.+..++..|..++.+|..++++++.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666666677777777766653
No 102
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.79 E-value=1.5e+02 Score=17.91 Aligned_cols=27 Identities=7% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
..+|...+++|-.+...+++|+++++.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 467888888888888888888887764
No 103
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.71 E-value=1.4e+02 Score=22.19 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 62 PVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 62 p~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.+.+|+..+..|.-|-+. .+.-+ =.+...-|.-|..|+.++..+.+||.+.|
T Consensus 9 ~~d~rD~~Ie~Lkreie~-lk~el---e~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 9 NKDEKDHLIERLYREISG-LKAQL---ENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp -CCTHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665544321 11000 01122334445566666777777777655
No 104
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.70 E-value=1.4e+02 Score=20.89 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 90 GAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.-|..|+++|..|.-+++....+|..+..
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555666666665555555555544433
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.44 E-value=1.1e+02 Score=21.80 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
-.+|+.+|..++.|++..+.++..++
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778887888887777775554
No 106
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.43 E-value=1.4e+02 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 87 GCVGAISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
.|++.|..|+.++..|+.|...++.|....
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777666543
No 107
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.29 E-value=1e+02 Score=23.15 Aligned_cols=22 Identities=45% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031034 90 GAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
++|..||..|.+|+.+|+.+.+
T Consensus 69 ~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776654
No 108
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.00 E-value=83 Score=25.65 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=15.4
Q ss_pred hHHHHhhcCCC--cchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 53 NVNKMLQELPV--HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113 (167)
Q Consensus 53 nv~kmL~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el 113 (167)
.|...|++=|. .++++.+..| ++-.|.. |.|+-.++|++.+++++..++.+|
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L 88 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRL 88 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHH
Confidence 35555555554 4566666554 5566664 666777777777777666666665
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.00 E-value=1.4e+02 Score=20.36 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031034 94 SLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
..|++++.|..+|+.+.++++.+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
Done!