Query 031034
Match_columns 167
No_of_seqs 137 out of 316
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 12:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 73.4 2.7 0.00019 27.7 4.9 57 68-124 15-71 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 63.0 5.5 0.0004 24.5 4.4 26 89-114 32-57 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 56.6 14 0.0011 23.6 5.9 30 89-118 51-80 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 54.0 11 0.00081 23.9 4.9 30 88-117 48-77 (80)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 38.5 27 0.002 21.7 4.9 30 89-118 46-75 (79)
6 d1nkpb_ a.38.1.1 (B:) Max prot 38.3 25 0.0018 22.1 4.7 31 88-118 45-75 (83)
7 d3coqa1 g.38.1.1 (A:8-48) Gal4 29.1 13 0.00092 21.0 1.7 15 12-26 2-16 (41)
8 d1urfa_ a.2.6.1 (A:) Protein k 28.4 67 0.0049 20.8 5.6 48 48-111 24-71 (81)
9 d1zmec1 g.38.1.1 (C:31-66) PUT 28.1 14 0.001 20.6 1.8 15 12-26 2-16 (36)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 27.7 38 0.0028 22.5 4.4 25 92-116 10-34 (133)
11 d3alca_ g.38.1.1 (A:) Ethanol 25.7 19 0.0014 21.9 2.3 19 7-25 7-25 (65)
12 d1pyia1 g.38.1.1 (A:30-71) PPR 23.8 21 0.0015 20.2 2.0 17 11-27 2-18 (42)
13 d1clda_ g.38.1.1 (A:) CD2-Lac9 22.8 17 0.0012 19.7 1.3 16 12-27 1-16 (33)
14 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.2 64 0.0047 21.3 4.8 28 92-119 3-30 (133)
15 d1quua1 a.7.1.1 (A:1-124) alph 21.5 92 0.0067 19.5 5.4 40 80-119 38-77 (124)
16 d2otaa1 a.284.1.1 (A:7-68) Hyp 20.8 25 0.0019 22.3 2.1 20 54-73 35-54 (62)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.43 E-value=2.7 Score=27.69 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 031034 68 DAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124 (167)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~q~~~~ 124 (167)
+-+.+=+-|+..-+.+|+||-.+.|..+..+.+.++.+|..-+..|..+.......+
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~ 71 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 71 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666778888888999999999999999999999999999999987766544444
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.02 E-value=5.5 Score=24.45 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVV 114 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~ 114 (167)
+-.|..||.|+..|++|+..++.+..
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998888877764
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.60 E-value=14 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
+-.|..|+.++..++.++..++.+...++.
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~ 80 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888877777655443
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.95 E-value=11 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLR 117 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r 117 (167)
.+-.|..|+.+++.|+.+.+.++.++...+
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 466889999999999999999888886554
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.45 E-value=27 Score=21.71 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 89 VGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
+-.|..|+.++..+..++..++.+...++.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999998888888887766653
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.34 E-value=25 Score=22.10 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031034 88 CVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118 (167)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~ 118 (167)
.+-.|..|+.++..++.++...+.+...++.
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~ 75 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888887777655543
No 7
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.11 E-value=13 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.983 Sum_probs=12.1
Q ss_pred CCChhhHHhhhCCCC
Q 031034 12 SPCAACKLLRRRCAQ 26 (167)
Q Consensus 12 ~~CAACK~lRRrC~~ 26 (167)
++|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578888888888864
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.36 E-value=67 Score=20.76 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=27.8
Q ss_pred HhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 031034 48 VFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQA 111 (167)
Q Consensus 48 vFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~ 111 (167)
.=|+.||+++++.-...+|... -||+. .+..-.+.|+.|+.+|..+++
T Consensus 24 keGaEnm~k~~~~~~~~DrK~l-----~eaq~-----------~l~eS~~Ki~lLr~~L~~~~q 71 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKLL-----LTAQQ-----------MLQDSKTKIDIIRMQLRRALQ 71 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999998665555332 23332 233334556666666655544
No 9
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.07 E-value=14 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=10.3
Q ss_pred CCChhhHHhhhCCCC
Q 031034 12 SPCAACKLLRRRCAQ 26 (167)
Q Consensus 12 ~~CAACK~lRRrC~~ 26 (167)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467777777777753
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.68 E-value=38 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHL 116 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~ 116 (167)
+..|+++|+.+++++..++..+..+
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~ 34 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 11
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=25.69 E-value=19 Score=21.86 Aligned_cols=19 Identities=26% Similarity=0.786 Sum_probs=15.7
Q ss_pred CCCCCCCChhhHHhhhCCC
Q 031034 7 KQGAPSPCAACKLLRRRCA 25 (167)
Q Consensus 7 ~~g~~~~CAACK~lRRrC~ 25 (167)
+.-...+|-.||..+.+|.
T Consensus 7 r~R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 7 RRRQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSSSCCSCHHHHHTTCCCS
T ss_pred CcCcCHhHHHHHhccccCC
Confidence 3456789999999999995
No 12
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.75 E-value=21 Score=20.22 Aligned_cols=17 Identities=29% Similarity=0.923 Sum_probs=12.5
Q ss_pred CCCChhhHHhhhCCCCC
Q 031034 11 PSPCAACKLLRRRCAQD 27 (167)
Q Consensus 11 ~~~CAACK~lRRrC~~~ 27 (167)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 35688888888888643
No 13
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=22.85 E-value=17 Score=19.70 Aligned_cols=16 Identities=25% Similarity=0.875 Sum_probs=13.0
Q ss_pred CCChhhHHhhhCCCCC
Q 031034 12 SPCAACKLLRRRCAQD 27 (167)
Q Consensus 12 ~~CAACK~lRRrC~~~ 27 (167)
.+|..|+..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999753
No 14
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.17 E-value=64 Score=21.30 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 92 ISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
+..|..+++.++.+|...++++..++..
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~ 30 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRAT 30 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665554
No 15
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.51 E-value=92 Score=19.52 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=33.7
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034 80 RVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119 (167)
Q Consensus 80 R~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~ 119 (167)
...+|+..-+-.|..++.+.+.++.++..-+..+..+...
T Consensus 38 ~~~~~~~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~l~~~ 77 (124)
T d1quua1 38 LQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 77 (124)
T ss_dssp HCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3467888899999999999999999999999888766443
No 16
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=20.80 E-value=25 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=16.2
Q ss_pred HHHHhhcCCCcchhHHHHHH
Q 031034 54 VNKMLQELPVHQRGDAVSSM 73 (167)
Q Consensus 54 v~kmL~~lp~~~R~~a~~SL 73 (167)
++++|..+|+.+|...+++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 46677889999999888765
Done!