BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031035
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A IIDGKA+A IRSE+ ++V L E YG +VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
G+ SF+++LPE +S+ L V +LN P+ HGI+VQLPLPKH+NE + + +I KD D
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164
P+N+G L KGR+P F PCT K +I+ L CG
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIV--LLKRCG 160
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK +AQ +RSE+A++V+ + PGLAVV+VG SQ YV+ KRKAC EVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLPE SEAEL+ + LN + GILVQLPLP I+ KVL I +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
FHP N+G+L R P PCTP+ I+
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIV 147
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDGKA+A +R +IA+ V ++ +VPGLAV++VG SQ YV+ KRK C EVG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLP + S+ +L++ + LN P + GILVQLPLP H++ +L I +KDVDG
Sbjct: 65 FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
FHP NIG+LA R PL PCTPK I+
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIM 149
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
+IDGK++++ ++ +A +V+ P L +IVG S++YV+ K KACA+VGI
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S I LPE +E+EL+ + +LN VH ILVQLPLP HIN+ V+ I EKDVDGFH
Sbjct: 66 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 131 PLNIGKLAMKGRDPLFLPCTPKAII 155
P N+G+L ++ + L CTPK I+
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIM 149
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
T++DGKA++ I+ E+ E+ + L K G LAV++VG SQ+YV K KAC E GI
Sbjct: 5 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 63
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
KS L E +++ EL++ ++ LN VHGILVQLPLP HI ++ +L I KDVDGF
Sbjct: 64 KSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 123
Query: 130 HPLNIGKLAMKGRDPLFLPCTP 151
HP+N+G L + G + FLPCTP
Sbjct: 124 HPINVGYLNL-GLESGFLPCTP 144
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 122 bits (306), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DGKA I ++ + V L + G+ PGL ++VG SQ+YV K CA+VG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAAL-DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S DLP +S A L + ELN PD G +VQLPLPKH++E L + KD DG
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
HP N+G+L + P LPCTP+ I+
Sbjct: 122 LHPTNLGRLVLG--TPAPLPCTPRGIV 146
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKA 153
VDG +N G+LA + F+PCTPK
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKG 151
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKAII 155
VDG +N G+LA + F+PCTPK +
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCL 153
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DG+A+A+ I + V L K G+ P LA ++VG S +YV MK AC VG
Sbjct: 23 ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ S I+LP++ + +L++++ +LN PDVHGIL+Q P+P I+E ISL KDVDG
Sbjct: 83 MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
L G++AM + + TP I+
Sbjct: 143 VTCLGFGRMAMG--EAAYGSATPAGIM 167
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77
+ I + AE + + E+ G P L ++ +G + + Y K + ++GI + D++
Sbjct: 6 GEEIAEKKAENLHGIIERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKY 64
Query: 78 EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKL 137
+ +S +L+ ++ +L P ++GI+++ PLPK + +++ I KDVD P N G +
Sbjct: 65 DDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLI 124
Query: 138 AMKGRDPLFLPCTPKAII 155
A+ +P TP+A+I
Sbjct: 125 ALNRE--FLVPATPRAVI 140
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
TI+ K VA+T +EI V + + G+ P L + ++ Y + +K +G
Sbjct: 7 TILASK-VAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ +D+ + E E + + N V+GI+V P+ + ++ + + EKDV+G
Sbjct: 66 FR-YDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 129 FHPL-------NIGKLAMKGRDPLFLPCTPKAII 155
+ + N+ L + R LPCTP AI+
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIV 156
>pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of
Ribosome Recycling Factor From Mouse Cdna
Length = 84
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109
+SMK V + SF PE + A + +N+ P+V G L+++P+PK
Sbjct: 28 ISMKSPQVILVNMASF----PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK 76
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 253 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 312
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 313 LYVTFPIP 320
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 211 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 270
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 271 LYVTFPIP 278
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|2XKB|A Chain A, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|B Chain B, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|C Chain C, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|D Chain D, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|E Chain E, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|F Chain F, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|G Chain G, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|H Chain H, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|I Chain I, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|J Chain J, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|K Chain K, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|L Chain L, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
Length = 427
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E +R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
>pdb|2XKA|A Chain A, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|B Chain B, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|C Chain C, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|D Chain D, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|E Chain E, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|F Chain F, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|G Chain G, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
Length = 421
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E +R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
>pdb|3M8K|A Chain A, Protein Structure Of Type Iii Plasmid Segregation Tubz
Length = 428
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFXREQDRLFGNSDIKPLANVIVNDNTQXQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
>pdb|3M89|A Chain A, Structure Of Tubz-Gtp-G-S
Length = 427
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 204 SEIDEFXREQDRLFGNSDIKPLANVIVNDNTQXQRIIESQK---GTKDLKNRYVNWKE-V 259
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 260 ANDNVVSTLHEINIIPENYG 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,757,370
Number of Sequences: 62578
Number of extensions: 183872
Number of successful extensions: 922
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 30
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)