Query 031035
Match_columns 167
No_of_seqs 148 out of 1017
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02516 methylenetetrahydrofo 100.0 5.4E-55 1.2E-59 370.4 18.5 163 1-163 1-163 (299)
2 PRK14176 bifunctional 5,10-met 100.0 2.9E-54 6.3E-59 364.2 17.8 154 8-163 7-160 (287)
3 PRK14184 bifunctional 5,10-met 100.0 3.4E-54 7.5E-59 363.8 17.9 153 10-164 2-154 (286)
4 PRK14171 bifunctional 5,10-met 100.0 3.7E-54 8E-59 363.7 18.0 155 8-163 1-155 (288)
5 PRK14190 bifunctional 5,10-met 100.0 4E-54 8.7E-59 363.2 17.7 154 7-163 1-154 (284)
6 PRK14194 bifunctional 5,10-met 100.0 3.8E-54 8.1E-59 365.7 17.6 154 7-163 2-155 (301)
7 PRK14179 bifunctional 5,10-met 100.0 4.3E-54 9.4E-59 363.0 17.6 154 8-163 1-154 (284)
8 PRK14170 bifunctional 5,10-met 100.0 5E-54 1.1E-58 362.3 17.6 153 8-163 1-153 (284)
9 PRK10792 bifunctional 5,10-met 100.0 5.2E-54 1.1E-58 362.5 17.7 155 7-163 1-155 (285)
10 PRK14168 bifunctional 5,10-met 100.0 6.3E-54 1.4E-58 363.8 18.0 157 7-163 1-157 (297)
11 PRK14189 bifunctional 5,10-met 100.0 7E-54 1.5E-58 361.9 17.8 154 7-163 1-154 (285)
12 PRK14175 bifunctional 5,10-met 100.0 7.4E-54 1.6E-58 362.0 17.9 154 7-163 1-154 (286)
13 PRK14187 bifunctional 5,10-met 100.0 8.4E-54 1.8E-58 362.4 18.1 156 8-163 1-156 (294)
14 PLN02616 tetrahydrofolate dehy 100.0 1.2E-53 2.6E-58 368.7 18.4 157 7-163 71-227 (364)
15 PRK14167 bifunctional 5,10-met 100.0 1.1E-53 2.3E-58 362.3 17.7 153 8-163 1-153 (297)
16 PLN02897 tetrahydrofolate dehy 100.0 1.2E-53 2.7E-58 367.1 18.3 157 7-163 54-210 (345)
17 PRK14193 bifunctional 5,10-met 100.0 1.2E-53 2.7E-58 360.1 17.9 154 7-163 1-154 (284)
18 PRK14182 bifunctional 5,10-met 100.0 1.6E-53 3.5E-58 359.0 18.1 151 10-163 2-153 (282)
19 PRK14172 bifunctional 5,10-met 100.0 1.5E-53 3.3E-58 358.6 17.5 153 8-163 1-154 (278)
20 PRK14177 bifunctional 5,10-met 100.0 1.9E-53 4.1E-58 358.8 17.7 154 8-163 2-155 (284)
21 PRK14185 bifunctional 5,10-met 100.0 1.9E-53 4.1E-58 360.1 17.7 153 10-164 2-154 (293)
22 PRK14166 bifunctional 5,10-met 100.0 2.7E-53 5.9E-58 357.7 18.2 152 10-163 2-153 (282)
23 PRK14191 bifunctional 5,10-met 100.0 2.4E-53 5.2E-58 358.5 17.8 152 10-163 2-153 (285)
24 COG0190 FolD 5,10-methylene-te 100.0 1.9E-53 4.2E-58 356.9 17.0 152 10-163 1-152 (283)
25 PRK14188 bifunctional 5,10-met 100.0 2.6E-53 5.5E-58 360.4 17.8 154 8-163 1-154 (296)
26 PRK14183 bifunctional 5,10-met 100.0 3.1E-53 6.7E-58 357.1 17.7 152 10-163 2-153 (281)
27 PRK14169 bifunctional 5,10-met 100.0 4.2E-53 9.2E-58 356.5 17.9 152 9-163 1-152 (282)
28 PRK14186 bifunctional 5,10-met 100.0 4E-53 8.6E-58 358.9 17.8 154 8-163 1-154 (297)
29 PRK14178 bifunctional 5,10-met 100.0 4.6E-53 1E-57 355.8 17.6 147 11-163 2-148 (279)
30 PRK14173 bifunctional 5,10-met 100.0 6.8E-53 1.5E-57 356.0 17.2 151 7-163 1-151 (287)
31 PRK14180 bifunctional 5,10-met 100.0 1E-52 2.3E-57 354.2 17.8 153 10-163 2-154 (282)
32 PRK14181 bifunctional 5,10-met 100.0 1.5E-52 3.3E-57 353.7 17.5 148 11-163 2-149 (287)
33 PRK14174 bifunctional 5,10-met 100.0 2.2E-52 4.7E-57 354.4 18.3 154 10-163 2-155 (295)
34 KOG4230 C1-tetrahydrofolate sy 100.0 1.8E-46 4E-51 336.7 14.8 157 7-163 1-158 (935)
35 PRK14192 bifunctional 5,10-met 100.0 8.1E-45 1.7E-49 306.9 15.8 155 7-163 1-155 (283)
36 KOG0089 Methylenetetrahydrofol 100.0 1.4E-43 3E-48 294.8 14.7 157 8-164 7-163 (309)
37 PF00763 THF_DHG_CYH: Tetrahyd 100.0 3.1E-42 6.6E-47 257.2 11.3 117 10-127 1-117 (117)
38 PRK10423 transcriptional repre 95.7 0.087 1.9E-06 43.7 8.9 88 10-104 17-119 (327)
39 PRK09526 lacI lac repressor; R 95.5 0.15 3.3E-06 42.7 9.9 93 10-108 24-131 (342)
40 TIGR02417 fruct_sucro_rep D-fr 95.0 0.26 5.6E-06 41.0 9.6 88 10-104 18-123 (327)
41 PRK11303 DNA-binding transcrip 94.7 0.39 8.5E-06 39.9 9.9 89 10-105 19-125 (328)
42 PRK10703 DNA-binding transcrip 94.5 0.28 6E-06 41.1 8.6 89 10-105 20-123 (341)
43 PRK10401 DNA-binding transcrip 94.4 0.55 1.2E-05 39.5 10.3 88 10-104 20-122 (346)
44 PRK10727 DNA-binding transcrip 94.1 0.76 1.6E-05 38.6 10.6 88 10-104 20-122 (343)
45 PRK10014 DNA-binding transcrip 94.1 0.35 7.6E-06 40.4 8.5 89 10-105 25-128 (342)
46 TIGR01481 ccpA catabolite cont 93.9 0.57 1.2E-05 38.9 9.4 88 10-104 20-122 (329)
47 PRK09492 treR trehalose repres 93.6 0.54 1.2E-05 38.8 8.6 88 10-104 23-125 (315)
48 PF00731 AIRC: AIR carboxylase 93.2 0.62 1.3E-05 36.3 7.8 62 40-104 1-62 (150)
49 PRK14987 gluconate operon tran 92.6 1.2 2.5E-05 37.2 9.3 88 10-104 24-126 (331)
50 PRK11041 DNA-binding transcrip 92.1 2 4.3E-05 35.1 10.0 81 17-104 4-98 (309)
51 TIGR02405 trehalos_R_Ecol treh 91.4 2.1 4.5E-05 35.5 9.4 88 10-104 20-122 (311)
52 PF04392 ABC_sub_bind: ABC tra 89.1 2.8 6.2E-05 35.0 8.4 71 28-103 120-190 (294)
53 COG1609 PurR Transcriptional r 87.9 5.7 0.00012 34.0 9.7 89 10-105 19-122 (333)
54 cd00578 L-fuc_L-ara-isomerases 87.5 2.6 5.7E-05 37.7 7.6 66 40-108 1-74 (452)
55 cd06320 PBP1_allose_binding Pe 85.9 4.7 0.0001 32.3 7.6 55 49-104 10-64 (275)
56 cd03557 L-arabinose_isomerase 84.4 2.8 6.1E-05 38.4 6.2 40 69-108 38-77 (484)
57 cd06292 PBP1_LacI_like_10 Liga 84.1 12 0.00025 29.9 9.2 57 49-108 10-66 (273)
58 cd06300 PBP1_ABC_sugar_binding 83.6 5.6 0.00012 31.8 7.1 56 50-106 11-69 (272)
59 cd06271 PBP1_AglR_RafR_like Li 83.4 12 0.00026 29.5 8.9 54 50-106 15-68 (268)
60 cd01391 Periplasmic_Binding_Pr 82.6 19 0.00041 27.3 9.7 68 39-106 124-191 (269)
61 PRK10936 TMAO reductase system 82.5 14 0.0003 31.4 9.4 63 41-104 48-111 (343)
62 PF13407 Peripla_BP_4: Peripla 82.1 4.8 0.0001 31.9 6.2 61 50-112 10-70 (257)
63 cd06296 PBP1_CatR_like Ligand- 81.2 12 0.00025 29.7 8.1 58 49-109 10-67 (270)
64 cd06273 PBP1_GntR_like_1 This 81.0 11 0.00023 29.9 7.8 54 49-105 10-63 (268)
65 cd06354 PBP1_BmpA_PnrA_like Pe 80.8 7.3 0.00016 31.5 6.9 61 42-106 2-66 (265)
66 cd06286 PBP1_CcpB_like Ligand- 80.7 12 0.00026 29.5 8.0 54 49-105 10-63 (260)
67 cd06267 PBP1_LacI_sugar_bindin 80.6 14 0.00031 28.6 8.3 60 49-111 10-69 (264)
68 cd06277 PBP1_LacI_like_1 Ligan 80.6 13 0.00027 29.6 8.1 55 49-106 13-67 (268)
69 cd06312 PBP1_ABC_sugar_binding 80.6 8.6 0.00019 30.8 7.2 54 50-105 12-65 (271)
70 PF01220 DHquinase_II: Dehydro 80.5 7.1 0.00015 30.2 6.3 44 56-104 30-73 (140)
71 KOG3135 1,4-benzoquinone reduc 80.5 4.9 0.00011 32.4 5.5 57 40-97 2-58 (203)
72 PRK10339 DNA-binding transcrip 80.3 8 0.00017 32.1 7.1 80 10-105 20-122 (327)
73 cd06289 PBP1_MalI_like Ligand- 80.1 14 0.00031 29.0 8.2 55 49-106 10-64 (268)
74 PRK02929 L-arabinose isomerase 79.7 5.2 0.00011 36.9 6.2 40 69-108 44-83 (499)
75 cd01537 PBP1_Repressors_Sugar_ 79.2 20 0.00044 27.6 8.7 66 42-110 2-68 (264)
76 cd01830 XynE_like SGNH_hydrola 78.2 13 0.00028 29.0 7.4 40 39-78 74-129 (204)
77 cd06305 PBP1_methylthioribose_ 77.8 14 0.0003 29.4 7.5 57 49-108 10-66 (273)
78 cd06282 PBP1_GntR_like_2 Ligan 76.8 16 0.00035 28.6 7.6 53 49-104 10-62 (266)
79 cd06306 PBP1_TorT-like TorT-li 76.7 14 0.00031 29.6 7.4 54 50-104 11-64 (268)
80 cd00466 DHQase_II Dehydroquina 76.6 9.7 0.00021 29.4 5.9 44 56-104 29-72 (140)
81 cd06283 PBP1_RegR_EndR_KdgR_li 76.1 24 0.00052 27.7 8.4 55 49-106 10-64 (267)
82 cd06310 PBP1_ABC_sugar_binding 75.9 16 0.00036 28.9 7.5 47 57-104 18-64 (273)
83 cd01536 PBP1_ABC_sugar_binding 75.7 19 0.0004 28.1 7.7 60 42-104 2-62 (267)
84 cd01835 SGNH_hydrolase_like_3 75.4 34 0.00073 26.1 10.0 96 38-139 68-185 (193)
85 cd01575 PBP1_GntR Ligand-bindi 75.0 15 0.00032 29.0 6.9 54 49-105 10-63 (268)
86 TIGR01162 purE phosphoribosyla 74.6 15 0.00033 28.9 6.7 58 45-104 3-60 (156)
87 cd06325 PBP1_ABC_uncharacteriz 74.4 17 0.00037 28.9 7.2 62 42-104 2-67 (281)
88 cd06299 PBP1_LacI_like_13 Liga 74.1 28 0.00061 27.4 8.4 54 49-105 10-63 (265)
89 PRK13015 3-dehydroquinate dehy 74.0 11 0.00023 29.4 5.6 44 56-104 31-74 (146)
90 PF04273 DUF442: Putative phos 73.9 20 0.00043 26.3 6.8 67 28-96 19-86 (110)
91 cd06303 PBP1_LuxPQ_Quorum_Sens 73.8 13 0.00027 30.1 6.4 62 42-104 2-67 (280)
92 cd06298 PBP1_CcpA_like Ligand- 73.5 19 0.0004 28.4 7.2 53 49-104 10-62 (268)
93 cd06317 PBP1_ABC_sugar_binding 72.6 23 0.0005 28.0 7.6 53 49-104 11-63 (275)
94 cd06316 PBP1_ABC_sugar_binding 72.5 27 0.00058 28.4 8.1 56 50-108 11-66 (294)
95 PF08659 KR: KR domain; Inter 72.4 12 0.00026 28.9 5.7 64 44-108 28-92 (181)
96 TIGR02955 TMAO_TorT TMAO reduc 72.1 24 0.00051 28.9 7.7 54 50-104 11-64 (295)
97 cd06309 PBP1_YtfQ_like Peripla 71.7 15 0.00033 29.3 6.4 53 49-104 10-62 (273)
98 cd06295 PBP1_CelR Ligand bindi 71.6 31 0.00067 27.4 8.2 51 49-104 21-71 (275)
99 cd01545 PBP1_SalR Ligand-bindi 71.5 42 0.00091 26.4 8.8 56 51-108 12-67 (270)
100 cd01840 SGNH_hydrolase_yrhL_li 71.3 29 0.00062 25.8 7.4 99 25-137 37-140 (150)
101 PF12683 DUF3798: Protein of u 71.3 18 0.00039 31.0 6.8 67 45-111 7-76 (275)
102 COG2217 ZntA Cation transport 71.1 4.6 0.0001 38.8 3.6 65 17-95 534-598 (713)
103 cd06293 PBP1_LacI_like_11 Liga 71.0 28 0.00061 27.6 7.8 59 43-104 3-62 (269)
104 PRK09426 methylmalonyl-CoA mut 70.9 31 0.00066 33.3 9.1 68 21-91 564-631 (714)
105 cd06302 PBP1_LsrB_Quorum_Sensi 70.8 28 0.0006 28.6 7.9 55 49-105 10-64 (298)
106 PRK06063 DNA polymerase III su 70.6 10 0.00022 32.7 5.3 69 10-92 238-308 (313)
107 cd06278 PBP1_LacI_like_2 Ligan 70.2 37 0.00081 26.6 8.2 53 50-106 11-63 (266)
108 TIGR01088 aroQ 3-dehydroquinat 70.1 17 0.00036 28.2 5.8 44 56-104 29-72 (141)
109 PRK05395 3-dehydroquinate dehy 69.8 17 0.00037 28.3 5.9 44 56-104 31-74 (146)
110 TIGR03765 ICE_PFL_4695 integra 69.5 15 0.00032 27.1 5.2 47 43-93 26-72 (105)
111 cd06270 PBP1_GalS_like Ligand 69.4 26 0.00055 27.8 7.2 54 49-105 10-63 (268)
112 cd01542 PBP1_TreR_like Ligand- 69.3 31 0.00066 27.1 7.6 54 50-106 11-64 (259)
113 cd01391 Periplasmic_Binding_Pr 68.8 27 0.00059 26.4 7.0 52 50-104 12-65 (269)
114 PF13458 Peripla_BP_6: Peripla 68.7 62 0.0014 26.5 9.6 66 39-108 135-201 (343)
115 cd03129 GAT1_Peptidase_E_like 68.5 52 0.0011 26.0 8.8 74 38-123 28-101 (210)
116 COG0272 Lig NAD-dependent DNA 68.4 9.5 0.00021 36.4 5.0 56 20-89 609-666 (667)
117 cd06314 PBP1_tmGBP Periplasmic 68.3 28 0.00061 27.7 7.3 60 43-104 3-62 (271)
118 cd01832 SGNH_hydrolase_like_1 67.5 50 0.0011 24.8 10.4 93 38-139 66-178 (185)
119 PLN02331 phosphoribosylglycina 67.4 36 0.00078 27.6 7.7 54 37-95 23-80 (207)
120 cd01574 PBP1_LacI Ligand-bindi 67.3 36 0.00079 26.7 7.6 58 48-107 9-66 (264)
121 COG0041 PurE Phosphoribosylcar 66.6 26 0.00057 27.7 6.4 60 42-103 4-63 (162)
122 PRK09701 D-allose transporter 66.2 40 0.00086 28.0 7.9 64 41-105 26-90 (311)
123 cd06288 PBP1_sucrose_transcrip 66.0 51 0.0011 25.9 8.2 54 50-106 12-65 (269)
124 PF11272 DUF3072: Protein of u 65.6 22 0.00048 23.4 4.9 42 48-94 12-53 (57)
125 COG0403 GcvP Glycine cleavage 65.4 7.9 0.00017 35.2 3.7 68 54-129 175-242 (450)
126 cd06294 PBP1_ycjW_transcriptio 65.3 55 0.0012 25.7 8.3 55 49-106 15-69 (270)
127 cd01994 Alpha_ANH_like_IV This 65.3 50 0.0011 26.3 8.0 62 37-99 23-90 (194)
128 cd01538 PBP1_ABC_xylose_bindin 65.2 45 0.00098 27.0 8.0 61 42-105 2-63 (288)
129 TIGR03679 arCOG00187 arCOG0018 65.1 30 0.00065 28.1 6.8 65 37-102 21-91 (218)
130 cd06297 PBP1_LacI_like_12 Liga 64.9 32 0.0007 27.5 7.0 52 50-104 11-62 (269)
131 cd06324 PBP1_ABC_sugar_binding 64.9 34 0.00073 28.2 7.2 55 50-107 12-67 (305)
132 cd00229 SGNH_hydrolase SGNH_hy 64.9 47 0.001 23.5 8.0 98 37-139 63-180 (187)
133 cd06284 PBP1_LacI_like_6 Ligan 64.8 48 0.001 25.9 7.9 55 49-106 10-64 (267)
134 cd01540 PBP1_arabinose_binding 64.8 33 0.00072 27.5 7.1 53 50-106 11-63 (289)
135 PF03358 FMN_red: NADPH-depend 64.7 29 0.00063 25.6 6.2 78 41-121 2-97 (152)
136 PF11072 DUF2859: Protein of u 64.0 28 0.00061 26.9 6.0 46 43-92 64-109 (142)
137 cd06280 PBP1_LacI_like_4 Ligan 63.9 55 0.0012 25.8 8.1 52 50-104 11-62 (263)
138 TIGR02667 moaB_proteo molybden 63.1 56 0.0012 25.3 7.8 119 38-161 3-144 (163)
139 PRK14010 potassium-transportin 63.0 12 0.00026 35.8 4.6 66 17-96 438-503 (673)
140 cd06323 PBP1_ribose_binding Pe 62.7 36 0.00078 26.7 6.8 53 49-104 10-62 (268)
141 cd06285 PBP1_LacI_like_7 Ligan 62.7 54 0.0012 25.8 7.9 55 49-106 10-64 (265)
142 cd01539 PBP1_GGBP Periplasmic 62.7 32 0.0007 28.3 6.7 52 50-104 11-64 (303)
143 cd06275 PBP1_PurR Ligand-bindi 62.4 31 0.00068 27.2 6.4 53 50-105 11-63 (269)
144 cd06290 PBP1_LacI_like_9 Ligan 62.4 40 0.00087 26.5 7.0 53 49-104 10-62 (265)
145 COG0655 WrbA Multimeric flavod 62.2 61 0.0013 25.7 8.0 30 50-79 13-42 (207)
146 cd06281 PBP1_LacI_like_5 Ligan 61.6 54 0.0012 26.0 7.7 53 50-105 11-63 (269)
147 cd06321 PBP1_ABC_sugar_binding 61.5 39 0.00085 26.8 6.9 54 50-104 11-64 (271)
148 cd06308 PBP1_sensor_kinase_lik 61.1 65 0.0014 25.5 8.1 57 50-109 11-68 (270)
149 PF08937 DUF1863: MTH538 TIR-l 61.0 24 0.00052 25.9 5.1 41 41-81 72-112 (130)
150 TIGR00824 EIIA-man PTS system, 60.3 46 0.001 24.2 6.5 84 56-139 12-99 (116)
151 cd01822 Lysophospholipase_L1_l 60.3 67 0.0015 23.7 8.8 92 38-139 63-168 (177)
152 cd06341 PBP1_ABC_ligand_bindin 59.3 53 0.0012 27.2 7.5 66 39-107 132-198 (341)
153 PRK11267 biopolymer transport 59.1 26 0.00056 26.4 5.1 55 11-71 75-129 (141)
154 TIGR02717 AcCoA-syn-alpha acet 59.1 99 0.0021 27.8 9.6 67 39-111 295-383 (447)
155 PLN03202 protein argonaute; Pr 57.9 52 0.0011 32.5 8.1 70 25-95 536-605 (900)
156 PRK14351 ligA NAD-dependent DN 57.4 22 0.00047 34.2 5.3 67 11-91 616-684 (689)
157 COG2117 Predicted subunit of t 57.3 33 0.00072 27.6 5.5 44 36-83 23-66 (198)
158 PRK09739 hypothetical protein; 57.1 59 0.0013 25.5 7.1 66 41-109 5-91 (199)
159 cd06274 PBP1_FruR Ligand bindi 57.1 63 0.0014 25.4 7.3 53 50-105 11-63 (264)
160 PF03575 Peptidase_S51: Peptid 57.0 41 0.00089 25.4 5.9 41 56-103 1-41 (154)
161 cd00578 L-fuc_L-ara-isomerases 57.0 37 0.0008 30.3 6.5 125 16-155 140-280 (452)
162 cd06315 PBP1_ABC_sugar_binding 56.9 60 0.0013 26.2 7.3 53 49-104 11-63 (280)
163 cd06332 PBP1_aromatic_compound 56.8 54 0.0012 26.8 7.1 49 55-103 18-71 (333)
164 PRK10355 xylF D-xylose transpo 56.7 76 0.0017 26.8 8.2 64 38-104 24-88 (330)
165 PRK10624 L-1,2-propanediol oxi 56.6 85 0.0018 27.4 8.6 98 9-119 9-108 (382)
166 PRK12550 shikimate 5-dehydroge 55.9 63 0.0014 27.2 7.4 65 37-108 6-70 (272)
167 TIGR02803 ExbD_1 TonB system t 55.8 30 0.00065 25.2 4.9 54 11-70 61-114 (122)
168 cd06291 PBP1_Qymf_like Ligand 55.8 75 0.0016 25.0 7.6 56 49-108 10-65 (265)
169 PF02610 Arabinose_Isome: L-ar 55.6 11 0.00024 33.5 2.8 37 71-107 46-82 (359)
170 TIGR02069 cyanophycinase cyano 55.4 1.1E+02 0.0024 25.4 8.7 72 37-120 26-100 (250)
171 cd01838 Isoamyl_acetate_hydrol 55.2 63 0.0014 24.2 6.8 40 39-78 63-117 (199)
172 cd06304 PBP1_BmpA_like Peripla 54.7 73 0.0016 25.4 7.4 44 57-104 20-63 (260)
173 PF02585 PIG-L: GlcNAc-PI de-N 54.0 25 0.00053 25.4 4.1 85 31-116 20-120 (128)
174 cd00886 MogA_MoaB MogA_MoaB fa 53.9 94 0.002 23.5 7.7 115 41-160 2-140 (152)
175 cd01825 SGNH_hydrolase_peri1 S 53.7 92 0.002 23.3 7.8 101 37-140 54-178 (189)
176 cd06375 PBP1_mGluR_groupII Lig 53.6 74 0.0016 28.4 7.9 65 41-106 176-241 (458)
177 cd04501 SGNH_hydrolase_like_4 53.6 93 0.002 23.3 9.7 98 38-140 58-176 (183)
178 PRK10569 NAD(P)H-dependent FMN 53.5 1E+02 0.0022 24.4 7.9 78 41-121 2-90 (191)
179 cd06340 PBP1_ABC_ligand_bindin 53.1 1.2E+02 0.0025 25.5 8.6 65 40-108 145-210 (347)
180 COG0482 TrmU Predicted tRNA(5- 53.0 19 0.0004 32.0 3.8 90 33-125 24-146 (356)
181 cd01392 HTH_LacI Helix-turn-he 52.9 14 0.0003 22.4 2.3 35 128-164 8-42 (52)
182 PRK15408 autoinducer 2-binding 52.8 60 0.0013 27.8 6.9 62 41-104 25-87 (336)
183 PF07788 DUF1626: Protein of u 52.6 49 0.0011 22.6 5.1 39 25-70 31-70 (70)
184 TIGR00177 molyb_syn molybdenum 52.0 84 0.0018 23.5 6.9 97 59-161 31-141 (144)
185 cd06319 PBP1_ABC_sugar_binding 51.9 74 0.0016 25.1 7.0 55 49-107 10-64 (277)
186 KOG3035 Isoamyl acetate-hydrol 51.9 62 0.0013 27.2 6.5 53 19-74 96-171 (245)
187 cd07014 S49_SppA Signal peptid 51.7 22 0.00048 27.5 3.8 32 77-108 19-50 (177)
188 TIGR02637 RhaS rhamnose ABC tr 51.5 81 0.0017 25.7 7.3 54 50-104 10-63 (302)
189 PF08501 Shikimate_dh_N: Shiki 51.4 12 0.00026 25.6 2.0 47 60-109 15-61 (83)
190 PF02601 Exonuc_VII_L: Exonucl 51.3 48 0.001 28.1 6.0 64 39-106 14-84 (319)
191 cd03146 GAT1_Peptidase_E Type 50.9 98 0.0021 24.7 7.5 41 37-78 29-70 (212)
192 cd00006 PTS_IIA_man PTS_IIA, P 50.7 93 0.002 22.5 7.0 85 55-139 10-98 (122)
193 cd06353 PBP1_BmpA_Med_like Per 50.3 86 0.0019 25.7 7.3 59 42-103 2-63 (258)
194 PRK01122 potassium-transportin 50.2 22 0.00047 34.1 4.1 65 18-96 443-507 (679)
195 PF00702 Hydrolase: haloacid d 49.6 38 0.00082 25.8 4.8 66 21-97 128-196 (215)
196 PF10881 DUF2726: Protein of u 49.5 99 0.0021 22.4 7.0 55 37-91 67-124 (126)
197 cd06279 PBP1_LacI_like_3 Ligan 49.2 1.1E+02 0.0024 24.5 7.7 52 49-108 15-66 (283)
198 PF13377 Peripla_BP_3: Peripla 49.0 99 0.0021 22.3 6.8 72 30-104 2-75 (160)
199 cd01541 PBP1_AraR Ligand-bindi 48.9 93 0.002 24.6 7.1 54 49-105 10-63 (273)
200 TIGR00289 conserved hypothetic 48.6 68 0.0015 26.4 6.3 63 38-102 24-90 (222)
201 cd06364 PBP1_CaSR Ligand-bindi 48.5 97 0.0021 28.2 7.9 64 41-106 189-253 (510)
202 cd06272 PBP1_hexuronate_repres 48.3 1.3E+02 0.0029 23.5 8.1 50 49-105 10-59 (261)
203 PLN02948 phosphoribosylaminoim 48.1 1.7E+02 0.0036 27.5 9.5 68 42-111 412-479 (577)
204 cd06313 PBP1_ABC_sugar_binding 48.0 78 0.0017 25.4 6.6 47 55-104 16-62 (272)
205 COG1879 RbsB ABC-type sugar tr 47.5 93 0.002 25.8 7.1 70 42-112 37-106 (322)
206 PF04412 DUF521: Protein of un 47.5 55 0.0012 29.4 6.0 111 22-164 226-341 (400)
207 cd04333 ProX_deacylase This CD 47.4 70 0.0015 23.9 5.8 85 59-148 3-97 (148)
208 PF11823 DUF3343: Protein of u 47.4 64 0.0014 21.4 5.0 29 53-81 10-38 (73)
209 cd06322 PBP1_ABC_sugar_binding 46.5 83 0.0018 24.7 6.4 53 50-105 11-63 (267)
210 cd07018 S49_SppA_67K_type Sign 46.4 36 0.00079 27.4 4.4 34 77-110 26-59 (222)
211 PRK07956 ligA NAD-dependent DN 46.4 33 0.00072 32.8 4.6 67 10-91 596-664 (665)
212 TIGR02432 lysidine_TilS_N tRNA 46.3 88 0.0019 23.9 6.4 42 37-78 27-68 (189)
213 cd08550 GlyDH-like Glycerol_de 46.1 89 0.0019 26.9 7.0 55 47-102 28-82 (349)
214 cd02978 KaiB_like KaiB-like fa 45.9 73 0.0016 21.8 5.1 38 41-78 3-43 (72)
215 cd08176 LPO Lactadehyde:propan 45.8 1.5E+02 0.0033 25.7 8.5 97 9-118 7-105 (377)
216 PRK05473 hypothetical protein; 45.8 22 0.00047 25.3 2.5 32 127-160 34-69 (86)
217 PF01171 ATP_bind_3: PP-loop f 45.7 1E+02 0.0022 23.8 6.6 126 31-163 21-161 (182)
218 COG0552 FtsY Signal recognitio 45.4 1E+02 0.0022 27.2 7.2 55 18-76 175-229 (340)
219 TIGR02638 lactal_redase lactal 45.3 1.9E+02 0.0042 25.1 9.1 100 9-120 8-108 (379)
220 cd07019 S49_SppA_1 Signal pept 45.2 27 0.00059 27.9 3.4 28 79-106 20-47 (211)
221 cd06276 PBP1_FucR_like Ligand- 45.0 1.3E+02 0.0027 24.0 7.3 58 42-105 2-60 (247)
222 cd06338 PBP1_ABC_ligand_bindin 44.7 1.8E+02 0.0039 24.0 9.4 64 39-106 141-205 (345)
223 TIGR00106 uncharacterized prot 43.8 78 0.0017 22.6 5.3 54 42-95 5-61 (97)
224 PF06574 FAD_syn: FAD syntheta 43.4 56 0.0012 25.2 4.8 77 24-104 23-113 (157)
225 PRK15454 ethanol dehydrogenase 43.3 1.3E+02 0.0028 26.6 7.7 106 9-127 28-137 (395)
226 cd08170 GlyDH Glycerol dehydro 43.1 1E+02 0.0022 26.5 6.9 50 53-103 34-83 (351)
227 PRK14350 ligA NAD-dependent DN 42.9 37 0.0008 32.5 4.4 66 10-90 599-666 (669)
228 cd08183 Fe-ADH2 Iron-containin 42.6 1.3E+02 0.0028 26.2 7.5 62 56-119 35-96 (374)
229 TIGR03566 FMN_reduc_MsuE FMN r 42.6 1.3E+02 0.0028 23.0 6.8 36 83-121 57-92 (174)
230 cd06362 PBP1_mGluR Ligand bind 42.5 1.5E+02 0.0033 25.8 8.0 65 41-106 174-239 (452)
231 cd07022 S49_Sppa_36K_type Sign 42.4 36 0.00078 27.2 3.7 30 80-109 25-54 (214)
232 PF00532 Peripla_BP_1: Peripla 42.2 1.3E+02 0.0027 24.9 7.1 61 42-106 4-65 (279)
233 cd06365 PBP1_Pheromone_recepto 42.2 1.3E+02 0.0028 26.8 7.6 64 41-106 174-240 (469)
234 cd01841 NnaC_like NnaC (CMP-Ne 41.9 1.4E+02 0.0031 22.1 9.9 96 38-139 50-166 (174)
235 TIGR01497 kdpB K+-transporting 41.8 63 0.0014 31.0 5.8 66 17-96 443-508 (675)
236 cd00002 YbaK_deacylase This CD 41.7 79 0.0017 23.7 5.4 86 61-149 5-102 (152)
237 COG1212 KdsB CMP-2-keto-3-deox 41.5 1.4E+02 0.003 25.3 7.0 65 59-124 54-118 (247)
238 COG2160 AraA L-arabinose isome 41.4 52 0.0011 30.1 4.8 79 65-146 40-135 (497)
239 cd01544 PBP1_GalR Ligand-bindi 41.3 1E+02 0.0022 24.5 6.3 47 50-107 16-62 (270)
240 PRK10528 multifunctional acyl- 41.3 1.6E+02 0.0036 22.6 9.6 102 18-135 56-171 (191)
241 KOG3474 Molybdopterin converti 41.0 29 0.00064 24.1 2.5 29 62-90 11-39 (84)
242 PLN02958 diacylglycerol kinase 41.0 2.8E+02 0.0062 25.3 10.5 100 14-125 90-193 (481)
243 PRK10653 D-ribose transporter 41.0 1.6E+02 0.0034 23.9 7.5 49 53-104 41-89 (295)
244 PLN02727 NAD kinase 41.0 1.2E+02 0.0027 30.4 7.6 62 29-93 274-337 (986)
245 COG0011 Uncharacterized conser 40.5 81 0.0018 22.9 4.9 55 41-95 6-63 (100)
246 COG0218 Predicted GTPase [Gene 40.4 2E+02 0.0044 23.4 9.2 101 19-120 87-192 (200)
247 cd08175 G1PDH Glycerol-1-phosp 40.4 1.4E+02 0.003 25.6 7.3 49 52-102 34-85 (348)
248 PRK10517 magnesium-transportin 40.1 48 0.001 32.8 4.8 44 17-70 547-590 (902)
249 cd06542 GH18_EndoS-like Endo-b 40.1 2E+02 0.0043 23.2 8.4 75 20-95 48-140 (255)
250 cd08192 Fe-ADH7 Iron-containin 39.9 1.9E+02 0.004 25.0 8.1 56 47-103 31-87 (370)
251 PF13607 Succ_CoA_lig: Succiny 39.9 57 0.0012 24.7 4.3 54 53-106 10-63 (138)
252 PHA03289 envelope glycoprotein 39.8 39 0.00085 29.7 3.7 46 45-91 299-344 (352)
253 PF00117 GATase: Glutamine ami 39.8 50 0.0011 25.4 4.1 50 54-112 7-56 (192)
254 PF09002 DUF1887: Domain of un 39.7 1.2E+02 0.0026 26.8 6.8 54 37-92 24-77 (381)
255 cd01543 PBP1_XylR Ligand-bindi 39.6 1.1E+02 0.0023 24.3 6.1 55 42-104 2-57 (265)
256 cd01821 Rhamnogalacturan_acety 39.4 1E+02 0.0022 23.6 5.8 56 18-74 89-152 (198)
257 PRK05282 (alpha)-aspartyl dipe 39.4 2.2E+02 0.0048 23.5 8.9 53 23-78 18-71 (233)
258 TIGR02634 xylF D-xylose ABC tr 39.3 1.2E+02 0.0026 25.0 6.5 47 55-104 15-61 (302)
259 PRK01215 competence damage-ind 39.2 1.2E+02 0.0025 25.6 6.5 62 39-105 3-70 (264)
260 cd06373 PBP1_NPR_like Ligand b 39.0 1.1E+02 0.0025 26.0 6.6 64 41-106 144-210 (396)
261 cd06348 PBP1_ABC_ligand_bindin 38.9 2.2E+02 0.0049 23.5 8.4 64 40-106 137-201 (344)
262 cd06327 PBP1_SBP_like_1 Peripl 38.8 2E+02 0.0044 23.7 7.9 64 39-105 135-198 (334)
263 cd02977 ArsC_family Arsenate R 38.7 82 0.0018 22.0 4.8 40 54-93 9-49 (105)
264 cd08025 RNR_PFL_like_DUF711 Un 38.6 3E+02 0.0065 24.9 10.9 63 55-117 91-159 (400)
265 COG4472 Uncharacterized protei 38.4 32 0.0007 24.3 2.4 32 126-159 33-68 (88)
266 cd08490 PBP2_NikA_DppA_OppA_li 38.3 1.1E+02 0.0023 26.8 6.4 37 41-77 322-358 (470)
267 TIGR00706 SppA_dom signal pept 38.3 49 0.0011 26.4 3.9 30 80-109 13-42 (207)
268 cd00950 DHDPS Dihydrodipicolin 38.2 2.3E+02 0.0049 23.4 9.5 75 53-129 80-159 (284)
269 cd01538 PBP1_ABC_xylose_bindin 38.1 2.1E+02 0.0046 23.0 9.3 49 57-105 144-198 (288)
270 PF00532 Peripla_BP_1: Peripla 38.0 2.3E+02 0.0049 23.3 9.2 74 29-104 110-187 (279)
271 TIGR02189 GlrX-like_plant Glut 37.9 1.4E+02 0.0031 20.9 6.2 52 52-103 16-67 (99)
272 TIGR03369 cellulose_bcsE cellu 37.9 2.3E+02 0.005 24.8 8.2 87 23-125 125-211 (322)
273 PRK11889 flhF flagellar biosyn 37.9 3.2E+02 0.007 25.0 9.6 15 144-158 418-432 (436)
274 TIGR00674 dapA dihydrodipicoli 37.8 2.4E+02 0.0052 23.5 9.7 88 37-129 66-157 (285)
275 COG2200 Rtn c-di-GMP phosphodi 37.7 51 0.0011 27.2 4.0 52 53-109 191-242 (256)
276 PRK11024 colicin uptake protei 37.4 1.2E+02 0.0026 22.6 5.8 46 23-71 88-133 (141)
277 PRK15122 magnesium-transportin 37.3 46 0.001 32.8 4.2 44 17-70 547-590 (903)
278 smart00115 CASc Caspase, inter 37.2 2.3E+02 0.005 23.1 8.6 63 39-104 7-79 (241)
279 cd00394 Clp_protease_like Case 37.0 41 0.00089 25.2 3.1 30 80-109 11-40 (161)
280 KOG3363 Uncharacterized conser 36.9 1.2E+02 0.0026 24.4 5.7 65 37-107 109-173 (196)
281 cd04502 SGNH_hydrolase_like_7 36.7 1.7E+02 0.0038 21.6 8.4 97 37-139 48-163 (171)
282 cd04336 YeaK YeaK is an unchar 36.6 1.8E+02 0.0038 21.6 6.8 86 60-148 4-100 (153)
283 COG1951 TtdA Tartrate dehydrat 36.6 1.1E+02 0.0025 26.4 6.0 88 19-111 166-260 (297)
284 PRK15088 PTS system mannose-sp 36.3 1.6E+02 0.0035 25.5 7.0 66 71-139 31-100 (322)
285 cd06307 PBP1_uncharacterized_s 36.3 1.8E+02 0.0039 23.0 7.0 61 41-103 1-64 (275)
286 COG0426 FpaA Uncharacterized f 36.2 3.3E+02 0.0071 24.6 9.6 109 41-162 248-357 (388)
287 TIGR00011 YbaK_EbsC ybaK/ebsC 36.2 1.2E+02 0.0026 22.6 5.6 62 60-122 3-77 (152)
288 cd01833 XynB_like SGNH_hydrola 36.1 1.7E+02 0.0036 21.2 9.3 94 37-140 38-150 (157)
289 PRK14465 ribosomal RNA large s 36.1 3E+02 0.0065 24.1 9.4 88 24-115 240-333 (342)
290 PF03610 EIIA-man: PTS system 36.1 1E+02 0.0022 22.0 5.0 83 56-138 10-97 (116)
291 PRK11181 23S rRNA (guanosine-2 36.0 2.5E+02 0.0053 23.1 9.2 72 58-139 37-114 (244)
292 TIGR00048 radical SAM enzyme, 35.5 3E+02 0.0065 24.1 8.7 71 24-94 243-320 (355)
293 cd00758 MoCF_BD MoCF_BD: molyb 35.5 1.8E+02 0.0038 21.3 7.1 113 42-161 2-128 (133)
294 PRK09590 celB cellobiose phosp 35.4 1.7E+02 0.0037 21.1 6.2 34 45-78 6-39 (104)
295 PRK05728 DNA polymerase III su 35.4 82 0.0018 23.8 4.5 34 44-77 107-140 (142)
296 TIGR02690 resist_ArsH arsenica 35.1 2.5E+02 0.0055 23.0 7.9 85 37-124 24-117 (219)
297 PF10138 vWA-TerF-like: vWA fo 35.0 2.5E+02 0.0054 22.9 8.6 81 37-120 102-183 (200)
298 PF04392 ABC_sub_bind: ABC tra 34.8 1.6E+02 0.0034 24.4 6.6 61 42-103 2-65 (294)
299 PF13829 DUF4191: Domain of un 34.8 2.3E+02 0.0051 23.5 7.4 64 37-115 152-215 (224)
300 cd06350 PBP1_GPCR_family_C_lik 34.7 2.5E+02 0.0055 23.1 7.9 64 41-106 162-226 (348)
301 smart00354 HTH_LACI helix_turn 34.7 36 0.00078 22.4 2.2 34 128-163 11-44 (70)
302 TIGR01809 Shik-DH-AROM shikima 34.6 2E+02 0.0042 24.1 7.2 61 44-108 8-69 (282)
303 cd06366 PBP1_GABAb_receptor Li 34.6 2.6E+02 0.0057 23.2 8.0 66 41-108 137-203 (350)
304 TIGR01647 ATPase-IIIA_H plasma 34.6 53 0.0012 31.6 4.1 45 17-71 439-483 (755)
305 cd01452 VWA_26S_proteasome_sub 34.4 2.4E+02 0.0052 22.5 11.0 61 40-100 108-169 (187)
306 TIGR01524 ATPase-IIIB_Mg magne 34.2 41 0.00088 33.0 3.3 44 17-70 512-555 (867)
307 COG2893 ManX Phosphotransferas 34.1 2.1E+02 0.0046 21.8 6.8 95 43-139 3-100 (143)
308 cd06291 PBP1_Qymf_like Ligand 34.1 2.3E+02 0.0049 22.1 9.0 64 41-104 114-180 (265)
309 PRK14175 bifunctional 5,10-met 34.0 1.2E+02 0.0026 26.0 5.8 86 9-102 36-123 (286)
310 PRK14172 bifunctional 5,10-met 33.9 1.3E+02 0.0027 25.8 5.9 86 9-102 36-123 (278)
311 PRK14166 bifunctional 5,10-met 33.8 1.2E+02 0.0027 25.9 5.8 86 9-102 34-121 (282)
312 PRK10680 molybdopterin biosynt 33.7 2E+02 0.0044 25.7 7.5 114 38-160 176-310 (411)
313 cd03036 ArsC_like Arsenate Red 33.7 1.2E+02 0.0026 21.7 5.0 40 54-93 9-49 (111)
314 PLN02285 methionyl-tRNA formyl 33.6 1.3E+02 0.0028 26.1 6.0 36 60-95 60-95 (334)
315 KOG3157 Proline synthetase co- 33.6 54 0.0012 27.4 3.4 49 46-95 178-226 (244)
316 cd06341 PBP1_ABC_ligand_bindin 33.6 1.2E+02 0.0025 25.1 5.6 34 70-103 40-73 (341)
317 cd01454 vWA_norD_type norD typ 33.6 2E+02 0.0043 21.6 6.5 43 39-81 104-155 (174)
318 cd06360 PBP1_alkylbenzenes_lik 33.5 1.9E+02 0.0042 23.6 6.9 48 55-102 18-70 (336)
319 COG2216 KdpB High-affinity K+ 33.3 88 0.0019 29.7 5.1 69 19-105 446-514 (681)
320 PRK00258 aroE shikimate 5-dehy 33.3 77 0.0017 26.4 4.5 47 59-108 23-69 (278)
321 PRK14193 bifunctional 5,10-met 33.1 1.2E+02 0.0025 26.1 5.5 114 9-132 36-162 (284)
322 PF02347 GDC-P: Glycine cleava 32.9 40 0.00088 30.6 2.8 65 53-129 164-228 (429)
323 TIGR02801 tolR TolR protein. T 32.9 1.6E+02 0.0035 21.4 5.7 58 11-71 63-123 (129)
324 cd08194 Fe-ADH6 Iron-containin 32.9 2.8E+02 0.0061 24.1 8.1 47 56-103 39-86 (375)
325 cd01741 GATase1_1 Subgroup of 32.9 93 0.002 23.9 4.6 51 41-105 1-54 (188)
326 PRK06988 putative formyltransf 32.8 80 0.0017 27.0 4.6 48 45-95 32-79 (312)
327 TIGR03849 arch_ComA phosphosul 32.8 2.7E+02 0.0058 23.3 7.5 67 23-95 41-112 (237)
328 cd06334 PBP1_ABC_ligand_bindin 32.8 3.1E+02 0.0067 23.3 8.4 68 39-109 140-207 (351)
329 cd08551 Fe-ADH iron-containing 32.6 3.2E+02 0.007 23.5 9.2 49 54-103 37-86 (370)
330 cd00995 PBP2_NikA_DppA_OppA_li 32.4 1.5E+02 0.0033 25.5 6.4 46 41-90 324-369 (466)
331 cd01148 TroA_a Metal binding p 32.4 2.7E+02 0.0058 22.6 7.5 89 7-106 134-232 (284)
332 PRK03767 NAD(P)H:quinone oxido 32.3 2.5E+02 0.0053 22.0 8.1 76 41-120 3-92 (200)
333 PF08967 DUF1884: Domain of un 32.3 1.8E+02 0.004 20.5 5.7 51 17-74 6-56 (85)
334 PRK14169 bifunctional 5,10-met 32.2 1.5E+02 0.0032 25.4 6.0 85 9-101 34-120 (282)
335 TIGR02804 ExbD_2 TonB system t 32.0 1.1E+02 0.0023 22.3 4.6 52 11-71 63-114 (121)
336 PRK14179 bifunctional 5,10-met 32.0 1.4E+02 0.003 25.6 5.8 120 9-136 36-166 (284)
337 PRK09417 mogA molybdenum cofac 32.0 2.7E+02 0.0058 22.3 8.1 115 39-159 3-144 (193)
338 cd06380 PBP1_iGluR_AMPA N-term 31.9 2.9E+02 0.0062 23.4 7.9 64 40-106 127-192 (382)
339 cd06342 PBP1_ABC_LIVBP_like Ty 31.9 2.8E+02 0.0061 22.5 9.0 63 41-106 137-199 (334)
340 PLN02949 transferase, transfer 31.8 3.9E+02 0.0084 24.1 10.9 76 40-124 302-379 (463)
341 PRK14046 malate--CoA ligase su 31.7 92 0.002 27.6 4.9 33 74-106 287-319 (392)
342 PRK14484 phosphotransferase ma 31.6 2.2E+02 0.0048 21.3 7.0 40 80-124 43-84 (124)
343 TIGR00106 uncharacterized prot 31.5 1.5E+02 0.0032 21.2 5.1 56 8-66 40-95 (97)
344 COG3340 PepE Peptidase E [Amin 31.4 3.1E+02 0.0067 22.9 8.8 70 15-91 14-84 (224)
345 PRK05828 acyl carrier protein; 31.4 1.6E+02 0.0034 20.4 5.1 48 50-97 36-83 (84)
346 cd01537 PBP1_Repressors_Sugar_ 31.4 2.4E+02 0.0051 21.5 8.9 65 40-105 119-186 (264)
347 PRK03170 dihydrodipicolinate s 31.2 3.1E+02 0.0067 22.8 9.5 66 53-119 81-151 (292)
348 TIGR00655 PurU formyltetrahydr 31.2 2E+02 0.0044 24.4 6.7 33 63-95 127-162 (280)
349 PTZ00347 phosphomethylpyrimidi 31.1 2E+02 0.0044 26.1 7.1 65 41-105 231-307 (504)
350 TIGR01016 sucCoAbeta succinyl- 31.0 98 0.0021 27.1 4.9 33 74-106 287-319 (386)
351 cd03522 MoeA_like MoeA_like. T 31.0 3.5E+02 0.0076 23.4 8.2 63 38-104 158-226 (312)
352 cd06318 PBP1_ABC_sugar_binding 30.9 2.4E+02 0.0052 22.3 6.9 53 50-105 11-63 (282)
353 PF14097 SpoVAE: Stage V sporu 30.9 2.3E+02 0.0051 22.8 6.5 40 57-96 13-54 (180)
354 PF10995 DUF2819: Protein of u 30.8 3.4E+02 0.0074 23.7 8.1 87 23-125 120-206 (316)
355 cd08511 PBP2_NikA_DppA_OppA_li 30.8 1.8E+02 0.0038 25.5 6.5 48 37-89 315-363 (467)
356 cd08189 Fe-ADH5 Iron-containin 30.7 3.6E+02 0.0078 23.4 9.0 62 56-119 42-104 (374)
357 PRK14178 bifunctional 5,10-met 30.7 1.6E+02 0.0034 25.2 5.9 85 9-101 30-116 (279)
358 PRK15395 methyl-galactoside AB 30.6 3.1E+02 0.0068 22.9 7.8 62 40-104 25-88 (330)
359 TIGR00507 aroE shikimate 5-deh 30.5 95 0.0021 25.6 4.5 47 59-108 18-64 (270)
360 cd08191 HHD 6-hydroxyhexanoate 30.4 3.7E+02 0.008 23.5 8.8 55 48-103 30-85 (386)
361 cd04335 PrdX_deacylase This CD 30.4 2.3E+02 0.0051 21.2 7.0 62 60-122 4-75 (156)
362 cd06303 PBP1_LuxPQ_Quorum_Sens 30.3 2.8E+02 0.0061 22.1 10.3 65 40-105 132-198 (280)
363 COG1103 Archaea-specific pyrid 30.2 1.6E+02 0.0035 25.9 5.8 51 23-73 140-191 (382)
364 PRK14191 bifunctional 5,10-met 30.2 1.5E+02 0.0032 25.4 5.7 86 9-102 35-122 (285)
365 TIGR00722 ttdA_fumA_fumB hydro 30.1 1.1E+02 0.0024 26.1 4.9 74 19-96 158-231 (273)
366 PLN02897 tetrahydrofolate dehy 30.1 1.5E+02 0.0032 26.3 5.8 119 9-135 90-221 (345)
367 PRK14690 molybdopterin biosynt 30.1 1.9E+02 0.0041 26.0 6.6 115 38-161 192-327 (419)
368 PRK03379 vitamin B12-transport 30.0 2.7E+02 0.0059 22.6 7.2 80 8-88 116-201 (260)
369 cd06523 GH25_PlyB-like PlyB is 29.9 1.9E+02 0.004 22.4 5.9 45 41-85 24-69 (177)
370 cd01457 vWA_ORF176_type VWA OR 29.9 1.8E+02 0.004 22.5 5.9 77 13-90 80-163 (199)
371 PRK14183 bifunctional 5,10-met 29.9 1.5E+02 0.0032 25.4 5.6 86 9-102 35-122 (281)
372 PRK14170 bifunctional 5,10-met 29.9 1.5E+02 0.0033 25.4 5.7 114 9-132 35-161 (284)
373 PF03960 ArsC: ArsC family; I 29.9 1.3E+02 0.0028 21.3 4.6 39 57-95 9-48 (110)
374 PRK05350 acyl carrier protein; 29.7 1.3E+02 0.0029 20.1 4.5 44 50-93 37-80 (82)
375 cd02876 GH18_SI-CLP Stabilin-1 29.7 3.4E+02 0.0074 22.8 8.2 41 54-94 94-141 (318)
376 PF00356 LacI: Bacterial regul 29.6 49 0.0011 20.4 2.0 34 128-163 10-43 (46)
377 TIGR02739 TraF type-F conjugat 29.6 3.4E+02 0.0074 22.8 8.0 53 23-79 139-191 (256)
378 cd08188 Fe-ADH4 Iron-containin 29.5 3.8E+02 0.0082 23.3 9.0 49 54-103 42-91 (377)
379 cd03032 ArsC_Spx Arsenate Redu 29.3 1.4E+02 0.0031 21.3 4.8 23 79-108 73-95 (115)
380 cd01146 FhuD Fe3+-siderophore 29.3 2.4E+02 0.0051 22.5 6.6 60 8-70 108-174 (256)
381 cd08185 Fe-ADH1 Iron-containin 29.2 3.8E+02 0.0083 23.2 8.9 97 10-119 6-104 (380)
382 PRK14466 ribosomal RNA large s 29.1 4E+02 0.0087 23.4 8.7 55 23-77 234-288 (345)
383 PF13905 Thioredoxin_8: Thiore 29.0 1.8E+02 0.0038 19.3 5.5 34 40-77 34-67 (95)
384 cd08195 DHQS Dehydroquinate sy 28.9 2.8E+02 0.006 23.8 7.3 50 45-95 29-81 (345)
385 PRK14173 bifunctional 5,10-met 28.8 1.7E+02 0.0037 25.1 5.8 115 9-133 33-160 (287)
386 PRK10792 bifunctional 5,10-met 28.8 1.8E+02 0.0038 25.0 5.9 85 9-101 37-123 (285)
387 cd08193 HVD 5-hydroxyvalerate 28.7 3.9E+02 0.0084 23.1 8.6 50 53-103 39-89 (376)
388 cd08549 G1PDH_related Glycerol 28.4 3.1E+02 0.0068 23.4 7.5 56 45-102 28-85 (332)
389 cd04657 Piwi_ago-like Piwi_ago 28.4 3E+02 0.0065 24.5 7.6 67 39-108 120-189 (426)
390 PRK14177 bifunctional 5,10-met 28.3 1.7E+02 0.0038 25.0 5.8 86 9-102 37-124 (284)
391 TIGR03471 HpnJ hopanoid biosyn 28.3 4.4E+02 0.0094 23.6 8.8 53 57-110 325-381 (472)
392 cd06376 PBP1_mGluR_groupIII Li 28.2 3.5E+02 0.0077 23.8 8.0 65 41-106 174-240 (463)
393 PRK14194 bifunctional 5,10-met 28.2 1.6E+02 0.0034 25.5 5.6 118 9-136 37-167 (301)
394 PRK08125 bifunctional UDP-gluc 28.2 1.2E+02 0.0026 28.5 5.2 51 42-95 27-77 (660)
395 PF07728 AAA_5: AAA domain (dy 28.2 1.8E+02 0.004 20.8 5.3 45 44-90 2-46 (139)
396 cd07023 S49_Sppa_N_C Signal pe 28.1 81 0.0018 24.9 3.6 29 80-108 17-45 (208)
397 PF04227 Indigoidine_A: Indigo 27.9 2.5E+02 0.0054 24.3 6.7 85 25-116 132-234 (293)
398 cd02871 GH18_chitinase_D-like 27.9 3.7E+02 0.0081 22.7 8.3 69 23-95 60-144 (312)
399 PF09673 TrbC_Ftype: Type-F co 27.8 1.4E+02 0.0031 21.6 4.6 59 57-116 13-72 (113)
400 PRK08057 cobalt-precorrin-6x r 27.8 2E+02 0.0042 24.0 6.0 19 59-77 206-224 (248)
401 PF13362 Toprim_3: Toprim doma 27.8 2E+02 0.0043 19.5 6.3 48 40-91 42-92 (96)
402 PRK14180 bifunctional 5,10-met 27.8 3.2E+02 0.0069 23.4 7.3 85 9-101 35-121 (282)
403 PRK06731 flhF flagellar biosyn 27.6 3.7E+02 0.0081 22.6 9.7 14 145-158 253-266 (270)
404 PLN02799 Molybdopterin synthas 27.6 1.2E+02 0.0026 20.2 3.9 30 62-91 11-40 (82)
405 PRK00696 sucC succinyl-CoA syn 27.6 1.1E+02 0.0024 26.7 4.7 45 62-106 274-319 (388)
406 COG1570 XseA Exonuclease VII, 27.5 1.7E+02 0.0036 26.9 5.8 141 13-158 101-259 (440)
407 PRK12549 shikimate 5-dehydroge 27.5 2.7E+02 0.0059 23.3 6.9 49 59-108 23-74 (284)
408 PF00496 SBP_bac_5: Bacterial 27.4 1.2E+02 0.0027 25.2 4.8 37 42-78 296-332 (374)
409 KOG4115 Dynein-associated prot 27.2 75 0.0016 23.1 2.9 24 83-106 3-26 (97)
410 PRK14171 bifunctional 5,10-met 27.1 1.4E+02 0.0029 25.7 5.0 86 9-102 36-123 (288)
411 PRK10026 arsenate reductase; P 27.0 2.9E+02 0.0062 21.1 6.5 23 79-108 75-97 (141)
412 PF00072 Response_reg: Respons 26.9 2E+02 0.0042 19.1 6.7 26 75-103 52-77 (112)
413 PRK10949 protease 4; Provision 26.8 1.2E+02 0.0027 28.7 5.1 45 79-123 94-141 (618)
414 TIGR00433 bioB biotin syntheta 26.5 3.6E+02 0.0079 22.1 8.3 72 24-104 66-140 (296)
415 PF01910 DUF77: Domain of unkn 26.4 1.5E+02 0.0033 20.8 4.4 54 42-95 3-59 (92)
416 PRK02261 methylaspartate mutas 26.4 2.8E+02 0.0061 20.8 7.0 31 61-94 105-135 (137)
417 cd06413 GH25_muramidase_1 Unch 26.4 3.1E+02 0.0068 21.3 6.8 62 31-95 19-83 (191)
418 cd08196 DHQS-like1 Dehydroquin 26.3 1E+02 0.0022 26.9 4.2 55 55-112 267-321 (346)
419 TIGR00705 SppA_67K signal pept 26.2 1.5E+02 0.0032 27.9 5.4 43 79-121 75-120 (584)
420 COG2179 Predicted hydrolase of 26.2 3.3E+02 0.0071 21.9 6.6 62 24-97 50-111 (175)
421 TIGR00237 xseA exodeoxyribonuc 26.2 2E+02 0.0043 25.9 6.0 66 41-106 131-196 (432)
422 PRK10824 glutaredoxin-4; Provi 26.1 2.7E+02 0.0058 20.5 8.3 72 26-104 5-77 (115)
423 PRK10310 PTS system galactitol 26.1 2.3E+02 0.005 19.7 6.5 60 43-112 5-65 (94)
424 cd08503 PBP2_NikA_DppA_OppA_li 26.1 2.5E+02 0.0054 24.6 6.6 40 40-79 322-361 (460)
425 TIGR01391 dnaG DNA primase, ca 26.0 2.2E+02 0.0048 25.3 6.3 44 44-87 304-347 (415)
426 TIGR02199 rfaE_dom_II rfaE bif 25.8 1.9E+02 0.0041 21.7 5.1 21 100-120 122-142 (144)
427 cd03364 TOPRIM_DnaG_primases T 25.8 1.9E+02 0.0041 19.0 4.6 34 42-75 45-78 (79)
428 KOG0207 Cation transport ATPas 25.6 83 0.0018 31.4 3.7 66 17-96 720-785 (951)
429 TIGR00715 precor6x_red precorr 25.5 1.7E+02 0.0038 24.4 5.3 19 59-77 214-232 (256)
430 PF04794 YdjC: YdjC-like prote 25.4 1.5E+02 0.0032 24.3 4.8 58 12-71 95-152 (261)
431 PRK09423 gldA glycerol dehydro 25.4 3.1E+02 0.0067 23.7 7.0 81 9-102 9-89 (366)
432 PRK14167 bifunctional 5,10-met 25.4 3.5E+02 0.0077 23.3 7.2 116 9-132 35-161 (297)
433 PRK14184 bifunctional 5,10-met 25.3 1.9E+02 0.0041 24.8 5.5 86 9-102 35-122 (286)
434 cd06371 PBP1_sensory_GC_DEF_li 25.3 3.3E+02 0.0071 23.4 7.2 61 41-104 134-195 (382)
435 TIGR02990 ectoine_eutA ectoine 25.3 2.5E+02 0.0055 23.1 6.2 60 40-104 121-188 (239)
436 TIGR02654 circ_KaiB circadian 25.2 1.4E+02 0.0031 21.1 4.0 27 41-67 5-31 (87)
437 COG0329 DapA Dihydrodipicolina 25.2 2E+02 0.0044 24.4 5.7 88 37-129 72-163 (299)
438 PRK13010 purU formyltetrahydro 25.2 3.8E+02 0.0081 22.9 7.3 35 61-95 134-171 (289)
439 PRK14187 bifunctional 5,10-met 25.1 2E+02 0.0043 24.8 5.6 85 9-101 36-122 (294)
440 PRK14189 bifunctional 5,10-met 25.1 3.3E+02 0.0072 23.3 7.0 85 9-101 36-122 (285)
441 COG0856 Orotate phosphoribosyl 25.1 98 0.0021 25.2 3.5 28 25-53 157-184 (203)
442 PF07521 RMMBL: RNA-metabolisi 25.0 90 0.0019 18.7 2.6 26 69-94 7-32 (43)
443 PRK14190 bifunctional 5,10-met 25.0 3.4E+02 0.0074 23.2 7.0 85 9-101 36-122 (284)
444 TIGR01884 cas_HTH CRISPR locus 24.9 3.4E+02 0.0075 21.3 7.0 63 41-104 27-93 (203)
445 PF00465 Fe-ADH: Iron-containi 24.9 1.5E+02 0.0033 25.5 4.9 47 56-103 37-84 (366)
446 PRK15045 cellulose biosynthesi 24.9 4.8E+02 0.01 24.5 8.3 87 23-125 273-359 (519)
447 TIGR01639 P_fal_TIGR01639 Plas 24.9 45 0.00098 21.8 1.3 23 75-97 5-27 (61)
448 PTZ00226 fumarate hydratase; P 24.8 3.2E+02 0.0068 26.0 7.2 77 19-96 235-316 (570)
449 cd03819 GT1_WavL_like This fam 24.8 3.5E+02 0.0076 21.9 7.0 62 24-91 202-263 (355)
450 cd04657 Piwi_ago-like Piwi_ago 24.8 2.5E+02 0.0055 24.9 6.5 56 13-68 243-304 (426)
451 PRK05568 flavodoxin; Provision 24.7 2.4E+02 0.0051 20.4 5.4 57 41-108 3-59 (142)
452 PRK05647 purN phosphoribosylgl 24.7 3.6E+02 0.0079 21.5 7.8 45 46-95 34-82 (200)
453 PF01183 Glyco_hydro_25: Glyco 24.7 1.9E+02 0.0042 22.1 5.1 53 41-93 21-78 (181)
454 PRK12548 shikimate 5-dehydroge 24.6 1.4E+02 0.003 25.1 4.6 47 59-108 27-73 (289)
455 cd08190 HOT Hydroxyacid-oxoaci 24.6 4.9E+02 0.011 23.0 9.1 63 55-119 38-101 (414)
456 cd08178 AAD_C C-terminal alcoh 24.6 2.9E+02 0.0063 24.2 6.7 71 55-127 36-109 (398)
457 PF06506 PrpR_N: Propionate ca 24.4 3.3E+02 0.0071 20.9 7.8 56 37-102 75-130 (176)
458 PRK14168 bifunctional 5,10-met 24.3 2.3E+02 0.005 24.5 5.8 86 9-102 37-124 (297)
459 cd08489 PBP2_NikA The substrat 24.3 2.5E+02 0.0054 24.7 6.4 44 42-89 336-379 (488)
460 cd07491 Peptidases_S8_7 Peptid 24.3 3.8E+02 0.0082 21.9 7.0 63 39-105 65-141 (247)
461 COG0078 ArgF Ornithine carbamo 24.3 4.8E+02 0.01 22.8 7.8 64 29-95 141-204 (310)
462 COG2185 Sbm Methylmalonyl-CoA 24.2 3.4E+02 0.0074 21.0 6.3 61 37-104 10-70 (143)
463 cd00887 MoeA MoeA family. Memb 24.1 3.1E+02 0.0066 24.2 6.8 116 38-161 167-303 (394)
464 KOG2884 26S proteasome regulat 24.1 4.4E+02 0.0095 22.2 9.0 56 40-95 108-164 (259)
465 PRK14027 quinate/shikimate deh 24.1 1.6E+02 0.0035 24.9 4.8 49 59-108 22-73 (283)
466 cd08664 APC10-HERC2 APC10-like 24.1 29 0.00062 27.2 0.3 39 37-75 85-148 (152)
467 TIGR01617 arsC_related transcr 24.1 1.7E+02 0.0037 20.9 4.5 8 100-107 88-95 (117)
468 COG5148 RPN10 26S proteasome r 24.0 4.2E+02 0.009 21.9 7.1 70 39-109 107-176 (243)
469 cd06363 PBP1_Taste_receptor Li 23.9 3.6E+02 0.0079 23.2 7.2 66 40-107 177-244 (410)
470 PF12138 Spherulin4: Spherulat 23.9 4.3E+02 0.0093 22.0 8.5 73 37-110 29-118 (253)
471 PLN02516 methylenetetrahydrofo 23.8 3.8E+02 0.0083 23.1 7.1 116 9-132 43-171 (299)
472 cd03034 ArsC_ArsC Arsenate Red 23.8 2E+02 0.0043 20.6 4.7 36 58-93 13-49 (112)
473 TIGR02873 spore_ylxY probable 23.7 4.4E+02 0.0094 22.1 7.4 80 19-107 156-239 (268)
474 cd06288 PBP1_sucrose_transcrip 23.6 3.5E+02 0.0077 21.0 8.8 64 41-104 118-184 (269)
475 PRK14188 bifunctional 5,10-met 23.5 3.7E+02 0.008 23.1 7.0 117 9-135 36-165 (296)
476 TIGR01210 conserved hypothetic 23.5 3.6E+02 0.0079 22.9 7.0 83 76-162 148-243 (313)
477 PRK14186 bifunctional 5,10-met 23.4 3.9E+02 0.0085 23.0 7.1 86 9-102 36-123 (297)
478 cd01142 TroA_e Periplasmic bin 23.3 2.2E+02 0.0047 23.2 5.4 77 8-87 130-217 (289)
479 PRK14185 bifunctional 5,10-met 23.3 2.4E+02 0.0052 24.3 5.7 85 9-101 35-121 (293)
480 cd00599 GH25_muramidase Endo-N 23.2 3.4E+02 0.0074 20.6 6.7 57 39-95 21-80 (186)
481 PRK05637 anthranilate synthase 23.2 2.4E+02 0.0053 22.6 5.6 49 50-111 9-57 (208)
482 COG1809 (2R)-phospho-3-sulfola 23.0 4.7E+02 0.01 22.1 8.2 81 22-112 59-144 (258)
483 PRK11033 zntA zinc/cadmium/mer 23.0 1.2E+02 0.0027 29.1 4.3 64 17-95 565-628 (741)
484 cd06326 PBP1_STKc_like Type I 23.0 3E+02 0.0065 22.4 6.3 18 86-103 57-74 (336)
485 TIGR01319 glmL_fam conserved h 22.9 5.6E+02 0.012 23.7 8.3 121 26-163 110-240 (463)
486 TIGR00639 PurN phosphoribosylg 22.9 3.9E+02 0.0084 21.2 7.6 44 47-95 34-81 (190)
487 PRK14174 bifunctional 5,10-met 22.9 2.4E+02 0.0053 24.2 5.7 116 9-132 35-163 (295)
488 cd06385 PBP1_NPR_A Ligand-bind 22.9 4.8E+02 0.01 22.3 9.2 44 57-103 165-208 (405)
489 cd02131 PA_hNAALADL2_like PA_h 22.8 2.4E+02 0.0053 22.1 5.2 43 27-74 28-70 (153)
490 PRK06756 flavodoxin; Provision 22.8 3E+02 0.0066 20.1 5.7 58 41-108 3-60 (148)
491 cd00032 CASc Caspase, interleu 22.8 4.2E+02 0.009 21.5 8.6 53 39-94 8-68 (243)
492 cd06374 PBP1_mGluR_groupI Liga 22.7 4.4E+02 0.0094 23.4 7.6 63 40-103 187-251 (472)
493 COG0128 AroA 5-enolpyruvylshik 22.6 4.7E+02 0.01 23.8 7.8 70 42-113 185-271 (428)
494 COG0190 FolD 5,10-methylene-te 22.6 2.5E+02 0.0055 24.1 5.7 85 9-101 34-120 (283)
495 PRK14176 bifunctional 5,10-met 22.6 4.2E+02 0.0091 22.7 7.1 115 9-131 42-167 (287)
496 cd00498 Hsp33 Heat shock prote 22.5 2E+02 0.0044 24.1 5.2 68 97-165 167-250 (275)
497 PRK14181 bifunctional 5,10-met 22.5 2.5E+02 0.0055 24.1 5.7 86 9-102 30-117 (287)
498 PRK08561 rps15p 30S ribosomal 22.5 93 0.002 24.4 2.8 64 79-161 27-95 (151)
499 COG1060 ThiH Thiamine biosynth 22.4 3.5E+02 0.0077 24.0 6.8 91 23-124 93-195 (370)
500 PRK04930 glutathione-regulated 22.4 3.1E+02 0.0068 21.7 6.0 64 41-108 7-72 (184)
No 1
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=5.4e-55 Score=370.43 Aligned_cols=163 Identities=80% Similarity=1.181 Sum_probs=157.5
Q ss_pred CCCCccchhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCC
Q 031035 1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80 (167)
Q Consensus 1 ~~~~~~~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~ 80 (167)
|+++++.|+++||||++|+++++++++++++|++++|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||+++
T Consensus 1 ~~~~~~~~~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~ 80 (299)
T PLN02516 1 MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENI 80 (299)
T ss_pred CCCCccccCeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 89999999999999999999999999999999887789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhh
Q 031035 81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCL 160 (167)
Q Consensus 81 ~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~ 160 (167)
|++++++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||++||++
T Consensus 81 s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~ 160 (299)
T PLN02516 81 SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR 160 (299)
T ss_pred CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998633478999999999999999
Q ss_pred ccC
Q 031035 161 INC 163 (167)
Q Consensus 161 ~~~ 163 (167)
|++
T Consensus 161 ~~i 163 (299)
T PLN02516 161 SGI 163 (299)
T ss_pred hCC
Confidence 985
No 2
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.9e-54 Score=364.19 Aligned_cols=154 Identities=43% Similarity=0.728 Sum_probs=150.1
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++||||++|++++++++++++.|+++.|++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++++++++
T Consensus 7 ~~~ildGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 86 (287)
T PRK14176 7 ESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLE 86 (287)
T ss_pred ceEEEEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 87 ~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i 160 (287)
T PRK14176 87 LIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGV 160 (287)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999998 688999999999999999986
No 3
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.4e-54 Score=363.76 Aligned_cols=153 Identities=44% Similarity=0.738 Sum_probs=149.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
+|||||++|++++++++++++.|++++|++|+||+|+||+||+|.+|+++|+|+|+++||+++.++||++++++++++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I 81 (286)
T PRK14184 2 LLLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLI 81 (286)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~ 164 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++.
T Consensus 82 ~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~ 154 (286)
T PRK14184 82 AELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLS 154 (286)
T ss_pred HHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999998 6889999999999999999863
No 4
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.7e-54 Score=363.74 Aligned_cols=155 Identities=37% Similarity=0.607 Sum_probs=150.1
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++|+||++|+++++++++++++|++++|++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++++++++
T Consensus 1 ~~~il~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~ 80 (288)
T PRK14171 1 MNNIIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLIS 80 (288)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 46799999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+ .++|+||||+|||+||++|++
T Consensus 81 ~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 81 KINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999983 388999999999999999986
No 5
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4e-54 Score=363.17 Aligned_cols=154 Identities=49% Similarity=0.787 Sum_probs=150.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+.+|+||++|+++++++++++++|+++ |+.|+|++|+||+||+|..|+++|+|+|+++||+++.++||++++++|++
T Consensus 1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (284)
T PRK14190 1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELL 79 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 56779999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 80 ~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i 154 (284)
T PRK14190 80 ALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNI 154 (284)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999986
No 6
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.8e-54 Score=365.73 Aligned_cols=154 Identities=42% Similarity=0.649 Sum_probs=149.8
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++|+||++|+++++++++++++|+++ |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||+++++++++
T Consensus 2 m~~~il~Gk~iA~~i~~~lk~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~ 80 (301)
T PRK14194 2 MSAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLL 80 (301)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 55679999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 81 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i 155 (301)
T PRK14194 81 ALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCG 155 (301)
T ss_pred HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 689999999999999999986
No 7
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.3e-54 Score=362.99 Aligned_cols=154 Identities=49% Similarity=0.756 Sum_probs=149.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++||||++|++++++++++++.+++++|++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++++++++
T Consensus 1 ~~~ildGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~ 80 (284)
T PRK14179 1 MTEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLD 80 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 45789999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 81 ~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i 154 (284)
T PRK14179 81 LIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNV 154 (284)
T ss_pred HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 688999999999999999986
No 8
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5e-54 Score=362.33 Aligned_cols=153 Identities=50% Similarity=0.801 Sum_probs=149.3
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++|+||++|++++++++++++.|+++ |++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++
T Consensus 1 ~~~il~Gk~iA~~i~~~ik~~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 79 (284)
T PRK14170 1 MGEIIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLS 79 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 5689999999999999999999999877 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 80 ~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i 153 (284)
T PRK14170 80 VVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGT 153 (284)
T ss_pred HHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 688999999999999999986
No 9
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.2e-54 Score=362.51 Aligned_cols=155 Identities=52% Similarity=0.804 Sum_probs=150.0
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|+++++++++++++|+++++++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++++|++
T Consensus 1 M~~~ildGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~ 80 (285)
T PRK10792 1 MTAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELL 80 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 44679999999999999999999999887678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||+++|++|++
T Consensus 81 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i 155 (285)
T PRK10792 81 ALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGI 155 (285)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999986
No 10
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.3e-54 Score=363.79 Aligned_cols=157 Identities=45% Similarity=0.731 Sum_probs=150.7
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|++++++++++++++++++|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||+++++++++
T Consensus 1 m~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~ 80 (297)
T PRK14168 1 MSAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELL 80 (297)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 44679999999999999999999999887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||++||++|++
T Consensus 81 ~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i 157 (297)
T PRK14168 81 ALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGV 157 (297)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999842368999999999999999986
No 11
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7e-54 Score=361.88 Aligned_cols=154 Identities=47% Similarity=0.773 Sum_probs=149.3
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|+++++++++++++|+++ |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||+++++++++
T Consensus 1 M~~~ildGk~va~~i~~~lk~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~ 79 (285)
T PRK14189 1 MTAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELL 79 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 44678999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 80 ~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i 154 (285)
T PRK14189 80 ARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGI 154 (285)
T ss_pred HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999985
No 12
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.4e-54 Score=362.00 Aligned_cols=154 Identities=44% Similarity=0.710 Sum_probs=149.5
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||+++++++++
T Consensus 1 m~~~il~Gk~ia~~i~~~~~~~v~~l~~~-g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~ 79 (286)
T PRK14175 1 MVAKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVL 79 (286)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45679999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||+++++
T Consensus 80 ~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 80 NELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999976
No 13
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.4e-54 Score=362.43 Aligned_cols=156 Identities=40% Similarity=0.630 Sum_probs=149.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++||||++|++|+++++++++.|++++|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+++++
T Consensus 1 ~~~ildGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~ 80 (294)
T PRK14187 1 ETNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIE 80 (294)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 46789999999999999999999998777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+..++|+||||+||++||++|++
T Consensus 81 ~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i 156 (294)
T PRK14187 81 KINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR 156 (294)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999842368999999999999999986
No 14
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.2e-53 Score=368.70 Aligned_cols=157 Identities=57% Similarity=0.956 Sum_probs=150.9
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
+++++||||++|++|++++++++++|+++.|++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++|+|++
T Consensus 71 ~~~~ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell 150 (364)
T PLN02616 71 GGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVL 150 (364)
T ss_pred ccCeEeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 35679999999999999999999999888789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.++.|+||||+||++||++|++
T Consensus 151 ~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i 227 (364)
T PLN02616 151 KFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNV 227 (364)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998633578999999999999999986
No 15
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-53 Score=362.35 Aligned_cols=153 Identities=42% Similarity=0.773 Sum_probs=149.2
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++|+||++|+++++++++++++|++. |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++++++++
T Consensus 1 ~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 79 (297)
T PRK14167 1 MTEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYD 79 (297)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 4679999999999999999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 80 ~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i 153 (297)
T PRK14167 80 TIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGV 153 (297)
T ss_pred HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 689999999999999999987
No 16
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.2e-53 Score=367.06 Aligned_cols=157 Identities=53% Similarity=0.910 Sum_probs=150.9
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
+|+++||||++|++|+++++++++.++++.|++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++|+|++
T Consensus 54 ~~~~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell 133 (345)
T PLN02897 54 QKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQIL 133 (345)
T ss_pred ccceEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHH
Confidence 46789999999999999999999999887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||++||++|++
T Consensus 134 ~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i 210 (345)
T PLN02897 134 SALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGV 210 (345)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998642478999999999999999987
No 17
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-53 Score=360.10 Aligned_cols=154 Identities=46% Similarity=0.777 Sum_probs=149.3
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+.+|+||++|++++++++++++.++++ |++|+||+|+||+||+|..|+++|+|+|+++||+++.++||+++++++++
T Consensus 1 ~~~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~ 79 (284)
T PRK14193 1 MTAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELN 79 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45668999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 80 ~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i 154 (284)
T PRK14193 80 AVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDV 154 (284)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999986
No 18
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-53 Score=358.97 Aligned_cols=151 Identities=46% Similarity=0.740 Sum_probs=146.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|++++++++++++.|+++ |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++++++++.|
T Consensus 2 ~ildGk~iA~~i~~~ik~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I 80 (282)
T PRK14182 2 NLIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALI 80 (282)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999999999877 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCC-CCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL-FLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~-~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++ |+||||+||++||++|++
T Consensus 81 ~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i 153 (282)
T PRK14182 81 ARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARV 153 (282)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998 466 999999999999999987
No 19
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-53 Score=358.59 Aligned_cols=153 Identities=38% Similarity=0.633 Sum_probs=148.0
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccC-CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g-~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
|+++||||++|+++++++++++++++++ | ..|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++++|++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~i~~l~~~-g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (278)
T PRK14172 1 MGQIINGKEVALKIKEEIKNFVEERKEN-GLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLI 79 (278)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhc-CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4579999999999999999999999877 5 5699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 80 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i 154 (278)
T PRK14172 80 NEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNI 154 (278)
T ss_pred HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999986
No 20
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-53 Score=358.82 Aligned_cols=154 Identities=41% Similarity=0.682 Sum_probs=149.5
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
-+++||||++|++|++++++++++|+++++..|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++++++++
T Consensus 2 ~~~ildGk~ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~ 81 (284)
T PRK14177 2 SPILLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLG 81 (284)
T ss_pred CCeEeEhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 36789999999999999999999998886788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 82 ~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i 155 (284)
T PRK14177 82 VIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGI 155 (284)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 689999999999999999986
No 21
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-53 Score=360.12 Aligned_cols=153 Identities=46% Similarity=0.722 Sum_probs=149.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|++++++++++++.|++++|++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++|+++++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 81 (293)
T PRK14185 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKV 81 (293)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~ 164 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++.
T Consensus 82 ~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~ 154 (293)
T PRK14185 82 RELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIE 154 (293)
T ss_pred HHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999998 6899999999999999999863
No 22
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.7e-53 Score=357.71 Aligned_cols=152 Identities=44% Similarity=0.711 Sum_probs=147.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|+++++++++++++|+++ |++|+|++|++|+||+|.+|+++|+|+|+++||+++.++||++++++++++.|
T Consensus 2 ~il~Gk~~a~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I 80 (282)
T PRK14166 2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALI 80 (282)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999999999877 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|. +++|+||||+||++||++|++
T Consensus 81 ~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 81 NTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999984 468999999999999999986
No 23
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.4e-53 Score=358.50 Aligned_cols=152 Identities=44% Similarity=0.712 Sum_probs=148.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++|+||++|++++++++++++.|+++.|++|+|++|+||+||+|..|+++|+|+|+++||+++.++||++++|+++++.|
T Consensus 2 ~il~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 81 (285)
T PRK14191 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLI 81 (285)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i 153 (285)
T PRK14191 82 KDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHI 153 (285)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998 688999999999999999986
No 24
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-53 Score=356.93 Aligned_cols=152 Identities=54% Similarity=0.833 Sum_probs=148.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||.+|+++++++++++++++++.|+.|+||+|++|+||||.+|+++|.|+|+++||.++.++||++++++|+++.|
T Consensus 1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I 80 (283)
T COG0190 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALI 80 (283)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHH
Confidence 37999999999999999999999988789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|+|+|+.+ +++|+||||+|||+||++|++
T Consensus 81 ~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 81 DELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999998
No 25
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-53 Score=360.37 Aligned_cols=154 Identities=47% Similarity=0.735 Sum_probs=149.8
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+++||||++|++++++++++++.|++++|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++++|+++
T Consensus 1 ~~~il~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 80 (296)
T PRK14188 1 MATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLA 80 (296)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 46789999999999999999999998777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 81 ~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i 154 (296)
T PRK14188 81 LIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHG 154 (296)
T ss_pred HHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 689999999999999999986
No 26
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.1e-53 Score=357.06 Aligned_cols=152 Identities=43% Similarity=0.734 Sum_probs=147.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|++++++++++++.|++..|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++++++++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I 81 (281)
T PRK14183 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETI 81 (281)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999863489999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i 153 (281)
T PRK14183 82 AMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEI 153 (281)
T ss_pred HHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998 689999999999999999986
No 27
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.2e-53 Score=356.54 Aligned_cols=152 Identities=39% Similarity=0.666 Sum_probs=148.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (167)
+.+||||++|++++++++++++.|+++ |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++.
T Consensus 1 ~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 79 (282)
T PRK14169 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAK 79 (282)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 358999999999999999999999877 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 89 I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 80 I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i 152 (282)
T PRK14169 80 VAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDI 152 (282)
T ss_pred HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998 689999999999999999986
No 28
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4e-53 Score=358.91 Aligned_cols=154 Identities=42% Similarity=0.659 Sum_probs=149.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
|+.+||||++|++++++++++++.+++++|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++++|+++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 80 (297)
T PRK14186 1 MALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEA 80 (297)
T ss_pred CCEEeehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 56799999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +..|.||||+||++||++|++
T Consensus 81 ~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i 154 (297)
T PRK14186 81 LIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQI 154 (297)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 678999999999999999986
No 29
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.6e-53 Score=355.84 Aligned_cols=147 Identities=46% Similarity=0.751 Sum_probs=144.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
+||||++|++++++++++++++ |++|+||+|+||+||+|.+|+++|+|+|+++||+++.++||++++++|+++.|+
T Consensus 2 il~Gk~~a~~i~~~~~~~v~~l----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 77 (279)
T PRK14178 2 ILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIR 77 (279)
T ss_pred eeeHHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 91 ELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 91 ~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||++||++|++
T Consensus 78 ~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i 148 (279)
T PRK14178 78 RLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKI 148 (279)
T ss_pred HHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998 689999999999999999986
No 30
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.8e-53 Score=356.02 Aligned_cols=151 Identities=39% Similarity=0.600 Sum_probs=146.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
|++.+|+||++|++++++++++++++ +++|+||+|+||+||+|..|+++|+|+|+++||+++.++||++++++|++
T Consensus 1 m~~~il~Gk~vA~~i~~~l~~~v~~l----~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 76 (287)
T PRK14173 1 MAARELSGPPAAEAVYAELRARLAKL----PFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELL 76 (287)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 44668999999999999999999998 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||+||++||++|++
T Consensus 77 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i 151 (287)
T PRK14173 77 ELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGI 151 (287)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 678999999999999999986
No 31
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1e-52 Score=354.15 Aligned_cols=153 Identities=42% Similarity=0.698 Sum_probs=148.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
.+||||++|+++++++++++++|+++.|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++++++++.|
T Consensus 2 ~ildGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 81 (282)
T PRK14180 2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELI 81 (282)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999999877689999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+ +++|+||||+||++||++|++
T Consensus 82 ~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 82 DQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999984 378999999999999999987
No 32
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-52 Score=353.74 Aligned_cols=148 Identities=40% Similarity=0.707 Sum_probs=144.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
+||||++|+++++++++++++| |++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++++|+++.|+
T Consensus 2 ildGk~iA~~i~~~~k~~v~~l----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~ 77 (287)
T PRK14181 2 LLKGAPAAEHILATIKENISAS----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIH 77 (287)
T ss_pred eeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 91 ELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 91 ~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+ .++|+||||+||++||++|++
T Consensus 78 ~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i 149 (287)
T PRK14181 78 RLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEI 149 (287)
T ss_pred HHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999984 368999999999999999986
No 33
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.2e-52 Score=354.39 Aligned_cols=154 Identities=47% Similarity=0.736 Sum_probs=148.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
.+||||++|++++++++++++.|++++|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+++++.|
T Consensus 2 ~il~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 81 (295)
T PRK14174 2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKI 81 (295)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||++||++|++
T Consensus 82 ~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i 155 (295)
T PRK14174 82 EDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNI 155 (295)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999842378999999999999999986
No 34
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=336.68 Aligned_cols=157 Identities=45% Similarity=0.726 Sum_probs=153.3
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhcc-CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (167)
|++.||+|+.+|++++++++++|+.++++. |++|.|+||+||++++|+.|+|+|.|+|+++||.+++++||+++|+-|+
T Consensus 1 ~~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~el 80 (935)
T KOG4230|consen 1 MVAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGEL 80 (935)
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHH
Confidence 568899999999999999999999999877 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+..|..||+|+.|||||||+|||.|+|++.+.++|+|+||||||+++|+|+|..|+.++.|+||||.|||+||+..+|
T Consensus 81 l~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v 158 (935)
T KOG4230|consen 81 LREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGV 158 (935)
T ss_pred HHHHHhccCCCccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999988999999999999999999886
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.1e-45 Score=306.87 Aligned_cols=155 Identities=40% Similarity=0.678 Sum_probs=149.6
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|++++++++++++.|++++|++|+|++|++|+||+|..|++++.|+|+++||+++.+.||+++++++++
T Consensus 1 ~~~~~l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~ 80 (283)
T PRK14192 1 MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLL 80 (283)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 35568999999999999999999999887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++||||+||+|+|+|+++++++++|+|.|||||+|+.|.|+|+.| ++.|.||||.|++++|+++++
T Consensus 81 ~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i 155 (283)
T PRK14192 81 AKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNI 155 (283)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 688999999999999999875
No 36
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=294.78 Aligned_cols=157 Identities=55% Similarity=0.848 Sum_probs=151.5
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
++.+++||.+|..+++++..+++.+++.+|..|+|+.++||+||+|..|+++|.|+|+++||....+.+|+..+++++++
T Consensus 7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~ 86 (309)
T KOG0089|consen 7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELES 86 (309)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHH
Confidence 57789999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~ 164 (167)
.|.++|+|++|||||||+|+|.|++++++++.++|+|||||||+.|+|+|......+.|+||||.||++||++++++
T Consensus 87 ~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~ 163 (309)
T KOG0089|consen 87 AIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIE 163 (309)
T ss_pred HHHHhcCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCe
Confidence 99999999999999999999999999999999999999999999999999986545679999999999999999986
No 37
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=100.00 E-value=3.1e-42 Score=257.17 Aligned_cols=117 Identities=53% Similarity=0.807 Sum_probs=103.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
+||+|+++|+.++++++++++.|+++ |++|+||+|++|+||+|.+|+++|+|+|+++||+++.++||++++++++++.|
T Consensus 1 ~iL~Gk~va~~i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 79 (117)
T PF00763_consen 1 KILDGKPVAKEIKEELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELI 79 (117)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHH
Confidence 37999999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcc
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVD 127 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||
T Consensus 80 ~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD 117 (117)
T PF00763_consen 80 EKLNEDPSVHGILVQLPLPKHIDERKILEAIDPEKDVD 117 (117)
T ss_dssp HHHHH-TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred HHHhCCCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence 99999999999999999999999999999999999998
No 38
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=95.68 E-value=0.087 Score=43.72 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=59.9
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|+. |+++.++++.+.++++ |..| .+++|.-. +++--..+.+...+.|++.|..+...
T Consensus 17 rvLn~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 92 (327)
T PRK10423 17 HVINKDRFVSEAITAKVEAAIKEL----NYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLC 92 (327)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH----CCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEE
Confidence 5788875 7777777777777666 5555 45555432 34556667788899999999887765
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
... .+.++..+.++.+.+ .+|+||++.
T Consensus 93 ~~~--~~~~~~~~~~~~l~~-~~vdGiI~~ 119 (327)
T PRK10423 93 NTE--GDEQRMNRNLETLMQ-KRVDGLLLL 119 (327)
T ss_pred eCC--CCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 432 244455566776654 469999996
No 39
>PRK09526 lacI lac repressor; Reviewed
Probab=95.54 E-value=0.15 Score=42.65 Aligned_cols=93 Identities=14% Similarity=0.268 Sum_probs=59.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++.++++.+.+++| |..| .++++.-. .++--....+...+.|++.|..+...
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~ 99 (342)
T PRK09526 24 RVLNQASHVSAKTREKVEAAMAEL----NYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVIS 99 (342)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEE
Confidence 5678765 6676777776666665 5544 45554422 12333456778889999999998876
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
....+ +.++..+.++.+.. ..||||++..|+.
T Consensus 100 ~~~~~-~~~~~~~~l~~l~~-~~vdGiii~~~~~ 131 (342)
T PRK09526 100 MVERS-GVEACQAAVNELLA-QRVSGVIINVPLE 131 (342)
T ss_pred eCCCC-hHHHHHHHHHHHHh-cCCCEEEEecCCC
Confidence 54432 23344466666643 5799999976654
No 40
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=94.96 E-value=0.26 Score=41.04 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=60.1
Q ss_pred hhcccHH----HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCcee
Q 031035 10 TIIDGKA----VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 10 ~ildGk~----la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
+.|+|+. |+++-++++.+.++++ |..| .++++.-. .++-.....+...+.|++.|..+
T Consensus 18 rvLn~~~~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~ 93 (327)
T TIGR02417 18 YVINGKAKEYRISQETVERVMAVVREQ----GYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQL 93 (327)
T ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHh----CCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEE
Confidence 5789985 8888888888887776 4444 45554422 34445556778899999999998
Q ss_pred eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 72 FDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 72 ~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
....... +.++..+.++.+.. ..|+||++.
T Consensus 94 ~i~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~ 123 (327)
T TIGR02417 94 LIACSDD--NPDQEKVVIENLLA-RQVDALIVA 123 (327)
T ss_pred EEEeCCC--CHHHHHHHHHHHHH-cCCCEEEEe
Confidence 7765433 34444556666644 469999985
No 41
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=94.65 E-value=0.39 Score=39.87 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=58.2
Q ss_pred hhcccHH----HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCcee
Q 031035 10 TIIDGKA----VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 10 ~ildGk~----la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
+.|+|++ |+++-++++.+.+++| |..| .++++.-+ .++--....+...+.|++.|+.+
T Consensus 19 rvLn~~~~~~~Vs~~tr~rV~~~a~el----gY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~ 94 (328)
T PRK11303 19 YVINGKAKQYRVSDKTVEKVMAVVREH----NYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQL 94 (328)
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHh----CCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEE
Confidence 5789985 8988888888888776 4333 45555432 23444445567888999999998
Q ss_pred eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 72 FDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 72 ~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
....... +.+...+.++.+-. ..|+|||+.-
T Consensus 95 ~~~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~~ 125 (328)
T PRK11303 95 LIACSDD--QPDNEMRCAEHLLQ-RQVDALIVST 125 (328)
T ss_pred EEEeCCC--CHHHHHHHHHHHHH-cCCCEEEEcC
Confidence 7764322 33334455665543 3699999953
No 42
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=94.46 E-value=0.28 Score=41.09 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=56.9
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.++++ |..| +++++.-+ +++--....+...+.|++.|.++...
T Consensus 20 rvLn~~~~vs~~tr~~V~~~a~el----gY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 95 (341)
T PRK10703 20 HVINKTRFVAEETRNAVWAAIKEL----HYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILC 95 (341)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 5678764 6666677777666665 5555 45555433 23344445578888999999887665
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
. ..-+.++..+.|+.+-. ..++||++.-
T Consensus 96 ~--~~~~~~~~~~~i~~l~~-~~vdgiii~~ 123 (341)
T PRK10703 96 N--AWNNLEKQRAYLSMLAQ-KRVDGLLVMC 123 (341)
T ss_pred e--CCCCHHHHHHHHHHHHH-cCCCEEEEec
Confidence 3 23345556677776654 3599999863
No 43
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=94.39 E-value=0.55 Score=39.50 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=55.0
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|+. |+++-++++.+.++++ |..| .++++.-+ .++--....+...+.|++.|......
T Consensus 20 rvLn~~~~Vs~~tr~kV~~~a~el----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~ 95 (346)
T PRK10401 20 RVLNNSALVSADTREAVMKAVSEL----GYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIG 95 (346)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHhhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEE
Confidence 5677754 6666666666666555 6655 46655432 23333444567788999999887765
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.... +.++..+.++.+.. .+++|||+.
T Consensus 96 ~~~~--~~~~~~~~i~~l~~-~~vdGiIi~ 122 (346)
T PRK10401 96 NSYH--EAEKERHAIEVLIR-QRCNALIVH 122 (346)
T ss_pred cCCC--ChHHHHHHHHHHHh-cCCCEEEEe
Confidence 4432 33444566666643 469999996
No 44
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=94.13 E-value=0.76 Score=38.62 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=55.9
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|+. |+++-++++.+.+++| |..| .++++.-+ .++--....+...+.|++.|......
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~el----gY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~ 95 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESL----SYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG 95 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 5788875 7777777777777666 5444 34544422 23434444567888999999887655
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
... .+.+...+.++.+.. ..|+||++.
T Consensus 96 ~~~--~~~~~~~~~i~~l~~-~~vdgiIi~ 122 (343)
T PRK10727 96 NGY--HNEQKERQAIEQLIR-HRCAALVVH 122 (343)
T ss_pred eCC--CCHHHHHHHHHHHHh-cCCCEEEEe
Confidence 433 233444556666643 369999996
No 45
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=94.08 E-value=0.35 Score=40.40 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=55.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|+. |+++.++++.+.+++| |..| .++++.-+ +++-.....+...+.|++.|......
T Consensus 25 r~Ln~~~~vs~~tr~~V~~~a~el----gY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~ 100 (342)
T PRK10014 25 LVLSGKGRISTATGERVNQAIEEL----GFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL 100 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHh----CCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEE
Confidence 4677765 6666666666655555 5555 45555432 23444444556789999999876654
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.. ..+.++..+.++.+.. .+++|||+.-
T Consensus 101 ~~--~~~~~~~~~~~~~l~~-~~vdgiIi~~ 128 (342)
T PRK10014 101 QG--GKDGEQLAQRFSTLLN-QGVDGVVIAG 128 (342)
T ss_pred eC--CCCHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 32 2344555677777654 4699999964
No 46
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=93.92 E-value=0.57 Score=38.91 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=56.6
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.+++| |..| .++++.-. .++--...++...+.|++.|..+...
T Consensus 20 rvLn~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~ 95 (329)
T TIGR01481 20 RVVNGNPNVKPATRKKVLEVIKRL----DYRPNAVARGLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILS 95 (329)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 5688875 7777777777766666 5544 45555422 23334444567788999999988776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.... +.+...+.++.+.. ..|+||++.
T Consensus 96 ~~~~--~~~~~~~~~~~l~~-~~vdGiIi~ 122 (329)
T TIGR01481 96 NSDE--DPEKEVQVLNTLLS-KQVDGIIFM 122 (329)
T ss_pred eCCC--CHHHHHHHHHHHHh-CCCCEEEEe
Confidence 4432 34455566666654 579999985
No 47
>PRK09492 treR trehalose repressor; Provisional
Probab=93.57 E-value=0.54 Score=38.79 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=55.0
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ ++.+-++++.+.++++ |..| ++++|.-. +++-.....+...+.+++.|..+...
T Consensus 23 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~ 98 (315)
T PRK09492 23 RVLNNESGVSEETRERVEAVINQH----GFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPIIM 98 (315)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEEE
Confidence 4677643 5555556665555554 5555 46666532 34445566778899999999887665
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
... .+.+...+.++.+.. ..|+|||+.
T Consensus 99 ~~~--~~~~~~~~~~~~l~~-~~vdgiIi~ 125 (315)
T PRK09492 99 ESQ--FSPEKVNEHLGVLKR-RNVDGVILF 125 (315)
T ss_pred ecC--CChHHHHHHHHHHHh-cCCCEEEEe
Confidence 432 233444556666654 469999996
No 48
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=93.23 E-value=0.62 Score=36.34 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=46.2
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
|+.+||. | ..++..+.+...+.++++||.|+....+...+.+++.+.++.+++ ...+-||.-
T Consensus 1 p~V~Ii~-g-s~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~-~~~~viIa~ 62 (150)
T PF00731_consen 1 PKVAIIM-G-STSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEA-RGADVIIAV 62 (150)
T ss_dssp -EEEEEE-S-SGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTT-TTESEEEEE
T ss_pred CeEEEEe-C-CHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhcc-CCCEEEEEE
Confidence 5555544 4 346777888899999999999999999999999999999999987 345656554
No 49
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=92.59 E-value=1.2 Score=37.25 Aligned_cols=88 Identities=11% Similarity=0.196 Sum_probs=53.8
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ ++.+.++++.+.+++| |..| .++++.-. .+|--....+...+.|++.|..+...
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 99 (331)
T PRK14987 24 RFLRNPEQVSVALRGKIAAALDEL----GYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLA 99 (331)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHh----CCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEe
Confidence 4677765 7777777776666665 5555 44544321 23333444567888999999887765
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.... +.+...+.++.+. ...|+||++.
T Consensus 100 ~~~~--~~~~~~~~~~~~~-~~~vdgiI~~ 126 (331)
T PRK14987 100 HYGY--KPEMEQERLESML-SWNIDGLILT 126 (331)
T ss_pred cCCC--CHHHHHHHHHHHH-hcCCCEEEEc
Confidence 4432 2333345555554 3579999995
No 50
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=92.10 E-value=2 Score=35.15 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCH
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSE 82 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~ 82 (167)
|+++-++++.+.+++| |..| ++++|.-. .++--..-.+...+.|++.|.......... +.
T Consensus 4 Vs~~Tr~rV~~~a~el----gY~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~ 77 (309)
T PRK11041 4 VSQATRQRVEQAVLEV----GYSPQSLGRNLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAH--QN 77 (309)
T ss_pred CCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCC--Ch
Confidence 4555566666666555 4444 45554432 223333345678899999999887765432 33
Q ss_pred HHHHHHHHHhcCCCCCcEEEEe
Q 031035 83 AELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 83 ~el~~~I~~lN~D~~V~GIlvq 104 (167)
+.-.+.++.+.. ..|+|||+.
T Consensus 78 ~~~~~~i~~l~~-~~vDgiIi~ 98 (309)
T PRK11041 78 QQEKTFVNLIIT-KQIDGMLLL 98 (309)
T ss_pred HHHHHHHHHHHH-cCCCEEEEe
Confidence 334456666554 469999995
No 51
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=91.42 E-value=2.1 Score=35.51 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred hhcccH-HHHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGK-AVAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk-~la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|+ .|+++-++++.+.++++ |..| .++++.-. +++-....++...+.|++.|......
T Consensus 20 r~Ln~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~ 95 (311)
T TIGR02405 20 RVLNNEPKVSIETRERVEQVIQQS----GFVPSKSARAMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYDPIIM 95 (311)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCeEEEe
Confidence 467765 35666666666666555 4444 45555422 24445556788899999999987765
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
... -+.+...+.++.+.. .+|+|+|+.
T Consensus 96 ~~~--~~~~~~~~~~~~l~~-~~vdGvIi~ 122 (311)
T TIGR02405 96 ESQ--FSPQLTNEHLSVLQK-RNVDGVILF 122 (311)
T ss_pred cCC--CChHHHHHHHHHHHh-cCCCEEEEe
Confidence 432 233444455665543 469999996
No 52
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=89.14 E-value=2.8 Score=34.98 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=48.1
Q ss_pred HHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 28 EVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 28 ~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.++.+++-....-+++++.-.+.+.|..+.+...+.+++.|++...+.++. .+++.+.++.+.++ ++++++
T Consensus 120 ~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~---~~~~~~~~~~l~~~--~da~~~ 190 (294)
T PF04392_consen 120 QLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPS---SEDLEQALEALAEK--VDALYL 190 (294)
T ss_dssp HHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESS---GGGHHHHHHHHCTT---SEEEE
T ss_pred HHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCc---HhHHHHHHHHhhcc--CCEEEE
Confidence 344343322333478777766667788999999999999999998887753 46788889999665 577666
No 53
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=87.91 E-value=5.7 Score=34.04 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCce------------EEEEEEC--CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVPG------------LAVVIVG--GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P~------------Laii~vg--~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|.+ |+++-++++.+.+++| |..|. +..+.+. .+|-....++.....|++.|...-+.
T Consensus 19 rvln~~~~Vs~eTr~kV~~a~~el----gY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~ 94 (333)
T COG1609 19 RVLNGSPYVSEETREKVLAAIKEL----GYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLA 94 (333)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE
Confidence 5788886 7777777777766665 66653 3333333 24566667789999999999998888
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.... ++++..+.++.+. +..|+|||+.-
T Consensus 95 ~~~~--~~~~e~~~~~~l~-~~~vdGiIi~~ 122 (333)
T COG1609 95 NTDD--DPEKEREYLETLL-QKRVDGLILLG 122 (333)
T ss_pred CCCC--CHHHHHHHHHHHH-HcCCCEEEEec
Confidence 7654 4555555555554 45799999975
No 54
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=87.50 E-value=2.6 Score=37.68 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=46.8
Q ss_pred ceEEEEEECCC---c----chHHHHHHHHHHHHHcCceeeeecCCCCC-CHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 40 PGLAVVIVGGR---K----DSQSYVSMKRKACAEVGIKSFDIDLPEQV-SEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 40 P~Laii~vg~d---~----as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
|++.+|-.+.+ + ....|.+...+.-++.|+++ +..+..+ +.+++.+..+++|++ +++||++.++-.
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v--v~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~tf 74 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEV--VDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTF 74 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceE--EecCcccCCHHHHHHHHHHHhhc-CCcEEEEccccc
Confidence 45666666655 3 34556666666666677644 4455556 889999999999998 899999987743
No 55
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=85.87 E-value=4.7 Score=32.28 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++-.....+...+.|++.|++......+..-+.+.-.+.++++-.. .|+||++.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~ 64 (275)
T cd06320 10 SNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINK-GYKGLLFS 64 (275)
T ss_pred CCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHh-CCCEEEEC
Confidence 45555556667888999999988877655444445556677766555 68999874
No 56
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=84.41 E-value=2.8 Score=38.44 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=32.3
Q ss_pred ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 69 i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.++++..+--.+.+++.+.+++.|.|++++||+++++-.
T Consensus 38 ~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TF 77 (484)
T cd03557 38 LPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTF 77 (484)
T ss_pred CCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCC
Confidence 4455566666678889999999999999999999998854
No 57
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.14 E-value=12 Score=29.85 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+++-.....+...+.|++.|........ ..+.+...+.++.|... +|||||+.-+.+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~ 66 (273)
T cd06292 10 SNPIFPAFAEAIEAALAQYGYTVLLCNT--YRGGVSEADYVEDLLAR-GVRGVVFISSLH 66 (273)
T ss_pred cCchHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHHc-CCCEEEEeCCCC
Confidence 4667777888999999999988766543 33445555667777665 699999975544
No 58
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=83.64 E-value=5.6 Score=31.76 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred CcchHHHHHHHHHHHHHc---CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEV---GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~---Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++-.....+...+.|++. |...+..-++..-+.+...+.++++... .|+||++.-.
T Consensus 11 ~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 11 NTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred ChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 444555666777888888 8755444445455666677888887666 7899998643
No 59
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=83.43 E-value=12 Score=29.47 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++-...+.+...+.|++.|+.+.......+ ++-.+.+.++-....|+||++.-+
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecC
Confidence 666777788999999999999888765543 233344555433457999999643
No 60
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=82.62 E-value=19 Score=27.34 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=46.7
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.-+++++.-..++.+....+.-.+.+++.|+...........+++......+.+++.+++++|++...
T Consensus 124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 191 (269)
T cd01391 124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACND 191 (269)
T ss_pred CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCc
Confidence 44677776444367788888888999999976654443333333455666677777778999999765
No 61
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=82.55 E-value=14 Score=31.42 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=44.1
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++|.-. +++--....+...+.|++.|..+.........+.++..+.++.+-+. .|+||++.
T Consensus 48 ~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~-~vdgIIl~ 111 (343)
T PRK10936 48 KLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAW-GADAILLG 111 (343)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHh-CCCEEEEe
Confidence 56655533 35555666678999999999998887654333455566777777554 59999995
No 62
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=82.15 E-value=4.8 Score=31.90 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
++=-..+.+...+.|++.|+.+..+ ++...+.++..+.|+.+-.. .++||++..+-|....
T Consensus 10 ~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~-~~d~Iiv~~~~~~~~~ 70 (257)
T PF13407_consen 10 NPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQ-GVDGIIVSPVDPDSLA 70 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHT-TESEEEEESSSTTTTH
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHh-cCCEEEecCCCHHHHH
Confidence 3444556778899999999999987 66777778888999888644 4999999877665553
No 63
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=81.15 E-value=12 Score=29.71 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
+++-.....+...+.|++.|+.+....... .++...+.|+.+... .++||++..+.+.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~l~~~-~~dgiii~~~~~~ 67 (270)
T cd06296 10 DSPWASEVLRGVEEAAAAAGYDVVLSESGR--RTSPERQWVERLSAR-RTDGVILVTPELT 67 (270)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEecCCC--chHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 456666777788899999999887765443 334555666666554 6999999766553
No 64
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=80.99 E-value=11 Score=29.88 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.++-...+.+...+.+++.|+.+... ..+.++++..+.++.+... .|+||++.-
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~-~vdgiii~~ 63 (268)
T cd06273 10 DNAIFARVIQAFQETLAAHGYTLLVA--SSGYDLDREYAQARKLLER-GVDGLALIG 63 (268)
T ss_pred CCchHHHHHHHHHHHHHHCCCEEEEe--cCCCCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 35566666778899999999888764 3444566667777777765 699999863
No 65
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=80.76 E-value=7.3 Score=31.54 Aligned_cols=61 Identities=20% Similarity=0.089 Sum_probs=42.8
Q ss_pred EEEEEEC----CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 42 LAVVIVG----GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 42 Laii~vg----~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++|.-. ++|-...-++...+.|++.|..+...... ..++..+.++.+-+ .+|+||++.-+
T Consensus 2 I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~---~~~~~~~~i~~l~~-~~vdgiI~~~~ 66 (265)
T cd06354 2 VALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESK---SDADYEPNLEQLAD-AGYDLIVGVGF 66 (265)
T ss_pred EEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecC---CHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 5555543 56777788889999999999988876432 23444566766644 57999999643
No 66
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=80.69 E-value=12 Score=29.49 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++-.....+...+.|++.|.+...... +.+.+...+.++.++.. .|+||++.-
T Consensus 10 ~~~~~~~i~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~-~vdgiii~~ 63 (260)
T cd06286 10 NHPYFSQLVDGIEKAALKHGYKVVLLQT--NYDKEKELEYLELLKTK-QVDGLILCS 63 (260)
T ss_pred CCchHHHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHHc-CCCEEEEeC
Confidence 4566667778889999999998876543 33555566777777554 699999963
No 67
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=80.65 E-value=14 Score=28.60 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHI 111 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i 111 (167)
+++....+.+..++.+++.|+++..+.. +.+.++..+.++.+-+. .++||++....+...
T Consensus 10 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~iii~~~~~~~~ 69 (264)
T cd06267 10 SNPFFAELLRGIEEAAREAGYSVLLCNS--DEDPEKEREALELLLSR-RVDGIILAPSRLDDE 69 (264)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEcC--CCCHHHHHHHHHHHHHc-CcCEEEEecCCcchH
Confidence 5677777788999999999999887654 34456667777777544 799999976655443
No 68
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.65 E-value=13 Score=29.61 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=38.7
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+|+-.....+...+.|++.|..+.......+ .++..+.++.+.+ .+||||++.-+
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~-~~vdgiii~~~ 67 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLILKFVSDE--DEEEFELPSFLED-GKVDGIILLGG 67 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEEEEeCCCC--hHHHHHHHHHHHH-CCCCEEEEeCC
Confidence 3677777788889999999998887765433 2334455555544 46999999654
No 69
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.61 E-value=8.6 Score=30.77 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++--...++...+.|++.|+.+..+.... .+.+...+.|+.+... .++||++.-
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~v~~~~~~~-~~~~~~~~~i~~l~~~-~vdgiii~~ 65 (271)
T cd06312 12 DPFWTVVKNGAEDAAKDLGVDVEYRGPET-FDVADMARLIEAAIAA-KPDGIVVTI 65 (271)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEECCCC-CCHHHHHHHHHHHHHh-CCCEEEEeC
Confidence 45555566778899999999988775433 3455666777777655 799999853
No 70
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=80.54 E-value=7.1 Score=30.17 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|+++|++++.++ +-.|.++++.|++.-++ ++||++-
T Consensus 30 i~~~~~~~a~~~g~~v~~~Q---SN~EGelid~I~~a~~~--~dgiIIN 73 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQ---SNHEGELIDWIHEARDD--VDGIIIN 73 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE----SSHHHHHHHHHHHTCT--TSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEe---cCCHHHHHHHHHHHHhh--CCEEEEc
Confidence 45577889999999988776 44789999999998666 9999996
No 71
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=80.54 E-value=4.9 Score=32.35 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=46.4
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPD 97 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 97 (167)
|+.+||...-+-.-..-++..+|-.+++|-+.+++++|++.+ +|+++....-+++.+
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~-~evl~km~a~pkp~d 58 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLS-EEVLEKMKAPPKPSD 58 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccC-HHHHHHhcCCCCCcc
Confidence 678888877777777788899999999999999999999866 567777777766643
No 72
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=80.30 E-value=8 Score=32.14 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=48.8
Q ss_pred hhcccHH---HHHHHHHHHHHHHHHHHhccCCCc--------------eEEEEEEC------CCcchHHHHHHHHHHHHH
Q 031035 10 TIIDGKA---VAQTIRSEIAEEVRLLSEKYGKVP--------------GLAVVIVG------GRKDSQSYVSMKRKACAE 66 (167)
Q Consensus 10 ~ildGk~---la~~i~~~lk~~v~~l~~~~g~~P--------------~Laii~vg------~d~as~~Y~~~k~k~~~~ 66 (167)
+.|+|++ |+.+-++++.+.++++ |.+| .+..|.+. +++--....+.....|++
T Consensus 20 rvln~~~~~~vs~~tr~rV~~~a~~l----gY~pn~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~f~~~l~~~i~~~~~~ 95 (327)
T PRK10339 20 RVLNDDPTLNVKEETKHRILEIAEKL----EYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEK 95 (327)
T ss_pred hhhcCCCCCCcCHHHHHHHHHHHHHh----CCCCchhhhhhccccccccEEEEEEccccccccCchHHHHHHHHHHHHHH
Confidence 5788886 8888888888888776 3322 22233332 222223345677888999
Q ss_pred cCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 67 VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 67 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.|+...... .. . .+. ...+|||||+.-
T Consensus 96 ~g~~~~~~~-~~--~-~~~--------~~~~vDgiI~~~ 122 (327)
T PRK10339 96 LGIELTNCY-EH--S-GLP--------DIKNVTGILIVG 122 (327)
T ss_pred CCCEEEEee-cc--c-ccc--------ccccCCEEEEeC
Confidence 998876542 11 1 111 136799999963
No 73
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.09 E-value=14 Score=29.00 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++-...+.+...+.|++.|...... ....+.+...+.|+.+.+ ..|+||++.-.
T Consensus 10 ~~~~~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~-~~vdgiii~~~ 64 (268)
T cd06289 10 TNPFFAELAAGLEEVLEEAGYTVFLA--NSGEDVERQEQLLSTMLE-HGVAGIILCPA 64 (268)
T ss_pred CcchHHHHHHHHHHHHHHcCCeEEEe--cCCCChHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 45566667778889999999877554 333445666778888775 47999999843
No 74
>PRK02929 L-arabinose isomerase; Provisional
Probab=79.72 E-value=5.2 Score=36.87 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=32.6
Q ss_pred ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 69 i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.++++..+--.|.+++.+.+++.|.|++++||+++++-.
T Consensus 44 ~~~~vv~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TF 83 (499)
T PRK02929 44 LPVKIVLKPVLTTPDEITAVCREANYDDNCAGVITWMHTF 83 (499)
T ss_pred CCeEEEEcCccCCHHHHHHHHHHccccCCCcEEEEccCCC
Confidence 4455555555667899999999999999999999998855
No 75
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=79.20 E-value=20 Score=27.63 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=45.6
Q ss_pred EEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 42 LAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 42 Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
++++.-+ +.+....+.+..++.+++.|+++..+... .++++..+.++++-.. .++||++.-..+..
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~ 68 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLANSQ--NDAEKQLSALENLIAR-GVDGIIIAPSDLTA 68 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHHHHHc-CCCEEEEecCCCcc
Confidence 4555544 35667778889999999999988877543 3456666777666544 79999996544433
No 76
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.18 E-value=13 Score=29.03 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=27.1
Q ss_pred CceEEEEEECCCcchH-------------HH---HHHHHHHHHHcCceeeeecCCC
Q 031035 39 VPGLAVVIVGGRKDSQ-------------SY---VSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 39 ~P~Laii~vg~d~as~-------------~Y---~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
.|.+++|.+|-|-... .| .+...+.|++.|+.+....+++
T Consensus 74 ~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P 129 (204)
T cd01830 74 GVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITP 129 (204)
T ss_pred CCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 6899999999876322 23 2355667777788877765544
No 77
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.79 E-value=14 Score=29.36 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+++-....++...+.|++.|+.+..+.- .-+.+...+.++.+-.. .|+||++..+-+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~-~vdgii~~~~~~ 66 (273)
T cd06305 10 SGDFDQAYLAGTKAEAEALGGDLRVYDA--GGDDAKQADQIDQAIAQ-KVDAIIIQHGRA 66 (273)
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHc-CCCEEEEecCCh
Confidence 4566666778889999999999887642 33445556666665444 699999975433
No 78
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=76.77 E-value=16 Score=28.63 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|-.....+...+.|++.|+.+...... -+++...+.++.+... .|+||++.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~-~vdgiii~ 62 (266)
T cd06282 10 ANPVFAECVQGIQEEARAAGYSLLLATTD--YDAEREADAVETLLRQ-RVDGLILT 62 (266)
T ss_pred CcchHHHHHHHHHHHHHHCCCEEEEeeCC--CCHHHHHHHHHHHHhc-CCCEEEEe
Confidence 35555666778889999999998887543 3456667788888764 79999986
No 79
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=76.75 E-value=14 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++--..-.+...+.|++.|+++.......+.+.++..+.|+.+-.. +++||++.
T Consensus 11 ~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiI~~ 64 (268)
T cd06306 11 DAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAW-GADAILLG 64 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEc
Confidence 4444445567788899999988776433223445555667666543 69999986
No 80
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=76.59 E-value=9.7 Score=29.45 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|++.|++++.++ +-.|.++++.|++.- .+++||++-
T Consensus 29 i~~~l~~~a~~~g~~v~~~Q---SN~Egelid~I~~a~--~~~dgiIIN 72 (140)
T cd00466 29 IEALLRELAAELGVEVEFFQ---SNHEGELIDWIHEAR--DGADGIIIN 72 (140)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHHhh--ccCcEEEEc
Confidence 45567788899999987775 347899999999973 368999985
No 81
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=76.06 E-value=24 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++-.....+...++|++.|+.+..+.- .-+.++..+.++.+-. ..|+||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~~dgiii~~~ 64 (267)
T cd06283 10 TNPFSSLVLKGIEDVCRAHGYQVLVCNS--DNDPEKEKEYLESLLA-YQVDGLIVNPT 64 (267)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEEEEcC--CCCHHHHHHHHHHHHH-cCcCEEEEeCC
Confidence 5666677788889999999988866543 2244555567776655 47899999654
No 82
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.86 E-value=16 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+.....|++.|...........-+.++..+.++.+... .|+||++.
T Consensus 18 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgvii~ 64 (273)
T cd06310 18 KAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIAR-GPDAILLA 64 (273)
T ss_pred HHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHh-CCCEEEEc
Confidence 346667889999988877532233555666777776554 69999995
No 83
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=75.70 E-value=19 Score=28.11 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=37.8
Q ss_pred EEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 42 LAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 42 Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++|.-+ +++.-..-.+...+.|++.|+.+....... +.+...+.++++... .|+|+++.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~vdgvi~~ 62 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQN--DVSKQIQQIEDLIAQ-GVDGIIIS 62 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCC--CHHHHHHHHHHHHHc-CCCEEEEe
Confidence 3444433 234434445566788888898888776543 445555677776555 78999886
No 84
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.44 E-value=34 Score=26.10 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCceEEEEEECCCcchH-----------HHHHHHHHHHHH--cCceeeeecCCCCC---------CHHHHHHHHHHhcCC
Q 031035 38 KVPGLAVVIVGGRKDSQ-----------SYVSMKRKACAE--VGIKSFDIDLPEQV---------SEAELISKVHELNVM 95 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~-----------~Y~~~k~k~~~~--~Gi~~~~~~l~~~~---------~~~el~~~I~~lN~D 95 (167)
.+|.+++|.+|-|.... .|.+...+..++ -+..+..+..+... ..+++-+.++++.+.
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~ 147 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLR 147 (193)
T ss_pred CCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 47999999999876432 355544444333 24444444443322 123455677777777
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 96 PDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 96 ~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
.++.-|=+..++..+-. ..+.+.+ -||+||...|.-..
T Consensus 148 ~~~~~vd~~~~~~~~~~---~~~~~~~---~Dg~Hpn~~G~~~~ 185 (193)
T cd01835 148 RDVPFLDTFTPLLNHPQ---WRRELAA---TDGIHPNAAGYGWL 185 (193)
T ss_pred cCCCeEeCccchhcCcH---HHHhhhc---cCCCCCCHHHHHHH
Confidence 66655555544443311 1111111 39999999887544
No 85
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=75.01 E-value=15 Score=28.97 Aligned_cols=54 Identities=7% Similarity=-0.062 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++.-..+.+...+.|++.|..+...... .+.++..+.++.+.. ..|+||++.-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgiii~~ 63 (268)
T cd01575 10 SNSVFADVLQGISDVLEAAGYQLLLGNTG--YSPEREEELLRTLLS-RRPAGLILTG 63 (268)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEecCC--CCchhHHHHHHHHHH-cCCCEEEEeC
Confidence 45666777788999999999988776543 233455566666653 4599999974
No 86
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=74.64 E-value=15 Score=28.85 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=46.3
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
|..| ..++.-+.+-..+.++++||.++....+...+.+++.+.+++..++. ++-||.-
T Consensus 3 IimG-S~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g-~~viIa~ 60 (156)
T TIGR01162 3 IIMG-SDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERG-IKVIIAG 60 (156)
T ss_pred EEEC-cHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCC-CeEEEEe
Confidence 4455 34556678888899999999999999999999999999999887653 5556654
No 87
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=74.43 E-value=17 Score=28.94 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=40.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCc----eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGI----KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++..-+++--..+++...+.+++.|- .++........+.++..+.++++-.+ .|+||++.
T Consensus 2 igv~~~~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vd~iI~~ 67 (281)
T cd06325 2 VGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVAD-KPDLIVAI 67 (281)
T ss_pred eEEecCCCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEc
Confidence 4455555677777777888888888884 23333333334556666777777654 79999984
No 88
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=74.08 E-value=28 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++-...+.+...+.|++.|+.+....-. -+.+...+.++.+-.. .|+|||+.-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~-~vdgiIi~~ 63 (265)
T cd06299 10 RNPYFASLATAIQDAASAAGYSTIIGNSD--ENPETENRYLDNLLSQ-RVDGIIVVP 63 (265)
T ss_pred CCccHHHHHHHHHHHHHHcCCEEEEEeCC--CCHHHHHHHHHHHHhc-CCCEEEEcC
Confidence 45666677788899999999988876433 2444555666665533 699999963
No 89
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=74.01 E-value=11 Score=29.40 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|+++|++++.++ +-.|.++++.|++. ...++||++-
T Consensus 31 i~~~~~~~a~~~g~~~~~~Q---SN~EGelId~i~~a--~~~~dgiIIN 74 (146)
T PRK13015 31 VEALCRAAAEALGLEVEFRQ---SNHEGELIDWIHEA--RGDVAGIVIN 74 (146)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHHh--hhcCCEEEEc
Confidence 34566778899999877775 44789999999997 3358998885
No 90
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=73.88 E-value=20 Score=26.25 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC-CCCCHHHHHHHHHHhcCCC
Q 031035 28 EVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP-EQVSEAELISKVHELNVMP 96 (167)
Q Consensus 28 ~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~-~~~~~~el~~~I~~lN~D~ 96 (167)
+++.+++. |++-. .-.|-.......-......+.|+++|+.|..+.+. ...+++.+....+.+++-+
T Consensus 19 d~~~la~~-GfktV-InlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 19 DLAQLAAQ-GFKTV-INLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLP 86 (110)
T ss_dssp HHHHHHHC-T--EE-EE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTT
T ss_pred HHHHHHHC-CCcEE-EECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 34555554 76532 22222211123334445788999999999988774 5567777777777777654
No 91
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=73.80 E-value=13 Score=30.13 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred EEEEEECC--CcchHHHHHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 42 LAVVIVGG--RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 42 Laii~vg~--d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++|.... +|-....++...+.|++.|..+....+..+ .+.+.-.+.|+.+-. .+|+||++.
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIv~ 67 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQ-SKPDYLIFT 67 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 45554431 344444556778889999988877643221 233444566666543 469999985
No 92
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=73.52 E-value=19 Score=28.40 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=37.0
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++-.....+...+.+++.|..+..... ..+.+...+.++.+-+ .++|||++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgiii~ 62 (268)
T cd06298 10 TNSYFAELARGIDDIATMYKYNIILSNS--DNDKEKELKVLNNLLA-KQVDGIIFM 62 (268)
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEeC--CCCHHHHHHHHHHHHH-hcCCEEEEe
Confidence 4566666667888899999998877643 2244555666666653 579999986
No 93
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.60 E-value=23 Score=28.01 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=38.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++-...+.+...+.|++.|+++..+.- ..+.+...+.++.+... .|+||++.
T Consensus 11 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~-~vdgiii~ 63 (275)
T cd06317 11 SHSYQTTYNKAFQAAAEEDGVEVIVLDA--NGDVARQAAQVEDLIAQ-KVDGIILW 63 (275)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEcC--CcCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 4566666777888899999998877643 33555666777776655 59999985
No 94
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.52 E-value=27 Score=28.37 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=36.8
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+|-.....+...+.|++.|+.+.... +.+.+.+...+.++.+-. .+++||++. |..
T Consensus 11 ~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~l~~~~~-~~~dgiii~-~~~ 66 (294)
T cd06316 11 SDWSNAQVRGAKDEFAKLGIEVVATT-DAQFDPAKQVADIETTIS-QKPDIIISI-PVD 66 (294)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEec-CCCCCHHHHHHHHHHHHH-hCCCEEEEc-CCC
Confidence 44445566678899999999886432 334455556667766543 358999985 544
No 95
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=72.43 E-value=12 Score=28.93 Aligned_cols=64 Identities=6% Similarity=0.135 Sum_probs=41.6
Q ss_pred EEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCC
Q 031035 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQLPLP 108 (167)
Q Consensus 44 ii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP 108 (167)
+|++|..+......+...+..++.|.+++.+... -.+++++.+.+..+.++ +.|+||+---..+
T Consensus 28 ~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D-v~d~~~v~~~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 28 LILLGRSGAPSAEAEAAIRELESAGARVEYVQCD-VTDPEAVAAALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp EEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE---TTSHHHHHHHHHTSHTTSS-EEEEEE-----
T ss_pred EEEeccCCCccHHHHHHHHHHHhCCCceeeeccC-ccCHHHHHHHHHHHHhccCCcceeeeeeeee
Confidence 4566766444445556777778889999888765 45678999999999877 5999998765443
No 96
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=72.09 E-value=24 Score=28.94 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+|-.....+...+.|++.|..+.........+.++..+.|+.+-. ..|+||++.
T Consensus 11 n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIi~ 64 (295)
T TIGR02955 11 DSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKS-WGADAILLG 64 (295)
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 444455556778889999999888765432244445566666543 469999996
No 97
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=71.70 E-value=15 Score=29.25 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.||-.....+...+.|++.|+++....-. .+.+.-.+.|+.+... .++||++.
T Consensus 10 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~~--~~~~~~~~~i~~l~~~-~vdgiIi~ 62 (273)
T cd06309 10 ESPWRTAETKSIKDAAEKRGFDLKFADAQ--QKQENQISAIRSFIAQ-GVDVIILA 62 (273)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEeCCC--CCHHHHHHHHHHHHHc-CCCEEEEc
Confidence 46777778889999999999998886533 2555666778777554 69999995
No 98
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.63 E-value=31 Score=27.44 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++-.....+...+.|++.|+.+.+.....+ .++.+.+ .++ ...++||++.
T Consensus 21 ~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~---~l~-~~~~dgiii~ 71 (275)
T cd06295 21 SDPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLAR---YLA-SGRADGVILI 71 (275)
T ss_pred CCchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHH---HHH-hCCCCEEEEe
Confidence 4445556667789999999999887754333 2333333 333 2468999996
No 99
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=71.54 E-value=42 Score=26.40 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 51 KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 51 ~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+--....+...+.+++.|..+.......+. ++...+.++.+.. ..|+||++..+.+
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~-~~vdgiii~~~~~ 67 (270)
T cd01545 12 GYVSEIQLGALDACRDTGYQLVIEPCDSGS-PDLAERVRALLQR-SRVDGVILTPPLS 67 (270)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEEeCCCCc-hHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence 344455567888999999998887665432 2244455555555 4799999974433
No 100
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=71.34 E-value=29 Score=25.84 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcC--ceeeeecCC-CCCCHHHHHHHHHHhcCCC-CCcE
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG--IKSFDIDLP-EQVSEAELISKVHELNVMP-DVHG 100 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~G--i~~~~~~l~-~~~~~~el~~~I~~lN~D~-~V~G 100 (167)
..+.++++++. +..|.+++|..|.|.. .|.++..+.-+.++ ........+ .....+++-+.++++.+.. +|+=
T Consensus 37 ~~~~l~~~~~~-~~~~d~vvi~lGtNd~--~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~ 113 (150)
T cd01840 37 APDLIRQLKDS-GKLRKTVVIGLGTNGP--FTKDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTI 113 (150)
T ss_pred HHHHHHHHHHc-CCCCCeEEEEecCCCC--CCHHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEE
Confidence 34445555543 5678999999998876 46777777777776 232222222 2223466777777775553 4332
Q ss_pred EEEeCCCCCCCCHHHHHhcCCCC-CCcccCCcccHHHh
Q 031035 101 ILVQLPLPKHINEEKVLGEISLE-KDVDGFHPLNIGKL 137 (167)
Q Consensus 101 Ilvq~PLP~~id~~~i~~~I~P~-KDVDGl~~~NlG~l 137 (167)
+ ++...+ .. .|+ -.-||+||.-.|.-
T Consensus 114 i----d~~~~~------~~-~~~~~~~DgiHpn~~G~~ 140 (150)
T cd01840 114 I----DWYKAA------KG-HPDWFYGDGVHPNPAGAK 140 (150)
T ss_pred e----cHHHHh------cc-cchhhcCCCCCCChhhHH
Confidence 2 221111 00 121 12389999888763
No 101
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=71.29 E-value=18 Score=30.99 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=48.6
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCc-eeeeecCCCCC--CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGI-KSFDIDLPEQV--SEAELISKVHELNVMPDVHGILVQLPLPKHI 111 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi-~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i 111 (167)
|..|.-..|.-..|...+..++.|= ...+..+|++. .+|..++.|-.|..||+|-.|+|-.=.|..+
T Consensus 7 ivTgtvSq~ed~~r~Ae~l~~~Yg~~~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~ 76 (275)
T PF12683_consen 7 IVTGTVSQSEDEYRGAEELIKKYGDVMIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTA 76 (275)
T ss_dssp EEE--TTT-HHHHHHHHHHHHHHHHHEEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---H
T ss_pred EEeCCcccChHHHHHHHHHHHHhCcceEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchH
Confidence 4456667788888899999999998 88999999983 4678889999999999999999999988644
No 102
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=71.10 E-value=4.6 Score=38.82 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+++.+|.+.++-|++|++. |++ .+++-||++.. -.+.|+++||+ ++-.+..+++=.+.|++|.+.
T Consensus 534 ~~D~~R~~a~~aI~~L~~~-Gi~---~~mLTGDn~~~------A~~iA~~lGId----~v~AellPedK~~~V~~l~~~ 598 (713)
T COG2217 534 LADELRPDAKEAIAALKAL-GIK---VVMLTGDNRRT------AEAIAKELGID----EVRAELLPEDKAEIVRELQAE 598 (713)
T ss_pred EeCCCChhHHHHHHHHHHC-CCe---EEEEcCCCHHH------HHHHHHHcChH----hheccCCcHHHHHHHHHHHhc
Confidence 6788899999999999877 876 56777998765 45568999994 334455567777888888744
No 103
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.96 E-value=28 Score=27.58 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=40.3
Q ss_pred EEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 43 AVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 43 aii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++|.-+ +++-.....+...+.|++.|.......... +++...+.++.+... .|+||++.
T Consensus 3 g~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~--~~~~~~~~i~~~~~~-~~dgiii~ 62 (269)
T cd06293 3 GLVVPDIANPFFAELADAVEEEADARGLSLVLCATRN--RPERELTYLRWLDTN-HVDGLIFV 62 (269)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHHC-CCCEEEEe
Confidence 444422 356666778889999999999887775442 445555666666544 59999996
No 104
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=70.93 E-value=31 Score=33.30 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 21 IRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 21 i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
-.|.++...+.+.++.|.+|+..+..+|.| ....=.+......+.-||++. + -....+.+++.+...+
T Consensus 564 ~fE~LR~~~~~~~~~~g~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~-~-~~~~~s~e~~v~aa~~ 631 (714)
T PRK09426 564 EFAAARALVEAFAEAEGRRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVD-I-GPLFQTPEEAARQAVE 631 (714)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEe-c-CCCCCCHHHHHHHHHH
Confidence 347888888887777799999999999998 577777888999999999983 2 2234677888887765
No 105
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=70.83 E-value=28 Score=28.58 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.+|-.....+...+.|++.|+.+.... +.+.+++...+.++.+... .++||++.-
T Consensus 10 ~~~f~~~i~~gi~~~a~~~g~~v~~~~-~~~~d~~~~~~~i~~~~~~-~~DgiIi~~ 64 (298)
T cd06302 10 GIPYFNRMEEGAKEAAKELGVDAIYVG-PTTADAAGQVQIIEDLIAQ-GVDAIAVVP 64 (298)
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEEEC-CCCCCHHHHHHHHHHHHhc-CCCEEEEec
Confidence 355555667788899999999877543 2334556666777776543 589999973
No 106
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=70.57 E-value=10 Score=32.68 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=46.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
.++.|.- . .=|+++++.++..--+. ++.-+.-.+.+|++++. .+|.+.|+++||. -++|+++++
T Consensus 238 ~v~TG~l-~-~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~----ssK~~kA~~~gi~--------ii~e~~f~~ 303 (313)
T PRK06063 238 VALSAEV-S-RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPE----QGKGYHARQLGVP--------VLDEAAFLE 303 (313)
T ss_pred EEEecCC-C-CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCc----ccHHHHHHHcCCc--------cccHHHHHH
Confidence 3455643 2 24567777666552211 44567888899988763 3589999999995 358899999
Q ss_pred HHHHh
Q 031035 88 KVHEL 92 (167)
Q Consensus 88 ~I~~l 92 (167)
.|...
T Consensus 304 ll~~~ 308 (313)
T PRK06063 304 LLRAV 308 (313)
T ss_pred HHHhh
Confidence 88664
No 107
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.17 E-value=37 Score=26.56 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++-.....+...+.|++.|+.+..+....+. +..+.|+.+- ...|+||++...
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~~-~~~vdgiii~~~ 63 (266)
T cd06278 11 NPFYSELLEALSRALQARGYQPLLINTDDDE---DLDAALRQLL-QYRVDGVIVTSG 63 (266)
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEcCCCCH---HHHHHHHHHH-HcCCCEEEEecC
Confidence 4555556677889999999998877654332 4445565554 357999999744
No 108
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=70.14 E-value=17 Score=28.20 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|+++|++++.++ +-.|.++++.|++.- .+++||++-
T Consensus 29 i~~~~~~~a~~~g~~v~~~Q---SN~EGelId~i~~a~--~~~dgiIIN 72 (141)
T TIGR01088 29 IVEIIETFAAQLNVELEFFQ---SNSEGQLIDKIHEAE--GQYDGIIIN 72 (141)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHhcc--ccCCEEEEc
Confidence 34566788899999877775 447899999999963 348999885
No 109
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=69.83 E-value=17 Score=28.31 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|++.|++++.++ +-.|.++++.|++.- ..++||++-
T Consensus 31 i~~~~~~~a~~~g~~v~~~Q---SN~EGelId~I~~a~--~~~dgiiIN 74 (146)
T PRK05395 31 IEALLEEEAAELGVELEFFQ---SNHEGELIDRIHEAR--DGADGIIIN 74 (146)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHhcc--cCCcEEEEC
Confidence 45566778899999987775 447899999999973 369999985
No 110
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=69.54 E-value=15 Score=27.07 Aligned_cols=47 Identities=13% Similarity=0.347 Sum_probs=36.6
Q ss_pred EEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc
Q 031035 43 AVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN 93 (167)
Q Consensus 43 aii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 93 (167)
.++.||||+.|..+.+.-...-++.|--.-++.. +..+=++.++++-
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV----~t~~~l~~Lr~la 72 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNV----ETAAALQRLRALA 72 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEec----CCHHHHHHHHHHc
Confidence 6899999999999999888888888877666654 3355667777764
No 111
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=69.36 E-value=26 Score=27.81 Aligned_cols=54 Identities=7% Similarity=-0.084 Sum_probs=40.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++|-...+.+...+.|++.|..+....-. .+++.-.+.|+.+.. ..|+||++.-
T Consensus 10 ~~~~~~~~~~g~~~~a~~~g~~~~~~~~~--~~~~~~~~~i~~~~~-~~vdgii~~~ 63 (268)
T cd06270 10 DGPFFGPLLSGVESVARKAGKHLIITAGH--HSAEKEREAIEFLLE-RRCDALILHS 63 (268)
T ss_pred cCcchHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHHH-cCCCEEEEec
Confidence 57778888889999999999998876433 234555677777665 4699999963
No 112
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=69.29 E-value=31 Score=27.07 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++-.....+...+.|++.|..+.... .+.+.++..+.|+++.. ..++||++.-+
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~i~~l~~-~~~dgii~~~~ 64 (259)
T cd01542 11 SFSTSRTVKGILAALYENGYQMLLMN--TNFSIEKEIEALELLAR-QKVDGIILLAT 64 (259)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEEe--CCCCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 45556667788899999998876653 33456667788888765 57999999743
No 113
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=68.82 E-value=27 Score=26.44 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=32.1
Q ss_pred CcchHHHHHHHHHHHHH--cCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAE--VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~--~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++-...+.+....++++ .|+++..+.- .-+.+...+.++++-.. .++||++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~ii~~ 65 (269)
T cd01391 12 APFGAQLLAGIELAAEEIGRGLEVILADS--QSDPERALEALRDLIQQ-GVDGIIGP 65 (269)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEEecC--CCCHHHHHHHHHHHHHc-CCCEEEec
Confidence 45556666677777878 5666555543 33445566666666544 68888774
No 114
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=68.72 E-value=62 Score=26.53 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=42.8
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceee-eecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSF-DIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.-++++|. .+++.+..+.+.-.+.+++.|++.. .+.++.+. .++...+.++.+ .+.+.|++...-+
T Consensus 135 ~~~v~iv~-~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~--~d~~~~~~~l~~-~~~d~v~~~~~~~ 201 (343)
T PF13458_consen 135 AKKVAIVY-PDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGD--TDFSALVQQLKS-AGPDVVVLAGDPA 201 (343)
T ss_dssp TSEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTS--SHHHHHHHHHHH-TTTSEEEEESTHH
T ss_pred CcEEEEEe-cCchhhhHHHHHHHHHHhhcCceeccceeccccc--ccchHHHHHHhh-cCCCEEEEeccch
Confidence 34788776 5588999999999999999999963 45555333 344444444433 2345677766533
No 115
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=68.49 E-value=52 Score=26.05 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHH
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL 117 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~ 117 (167)
..|++++|-..... ...|.+.-.+..+++|++...+....+.+.+++.+.|.. .++|++ .+=|...+.
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~-----~GG~~~~~~ 95 (210)
T cd03129 28 AGARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFV-----GGGNQLRLL 95 (210)
T ss_pred CCCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEE-----cCCcHHHHH
Confidence 57888888776554 678888999999999999988877654555777777765 478887 244555555
Q ss_pred hcCCCC
Q 031035 118 GEISLE 123 (167)
Q Consensus 118 ~~I~P~ 123 (167)
+.+...
T Consensus 96 ~~l~~t 101 (210)
T cd03129 96 SVLRET 101 (210)
T ss_pred HHHHhC
Confidence 555443
No 116
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=68.39 E-value=9.5 Score=36.44 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 20 TIRSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 20 ~i~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
--|+++|+.++.+-.+. .+..+.-.|.+|++++| |.+.|+++||.. .+|+++++.+
T Consensus 609 ~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGS------Kl~kA~eLgv~i--------~~E~~~~~ll 666 (667)
T COG0272 609 MSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGS------KLAKAQELGVKI--------IDEEEFLALL 666 (667)
T ss_pred CCHHHHHHHHHHcCCEEeceecccccEEEEcCCCCh------HHHHHHHcCCeE--------ecHHHHHHhh
Confidence 34678888888774322 35688999999999998 889999999963 3667887765
No 117
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=68.31 E-value=28 Score=27.74 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=36.6
Q ss_pred EEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 43 AVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 43 aii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++|.-..+|-....++.....+++.|+.+.... +...+.+...+.|+.+-. .+|+|+++.
T Consensus 3 ~~v~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~i~~l~~-~~vDgiIi~ 62 (271)
T cd06314 3 AVVTNGASPFWKIAEAGVKAAGKELGVDVEFVV-PQQGTVNAQLRMLEDLIA-EGVDGIAIS 62 (271)
T ss_pred EEEcCCCcHHHHHHHHHHHHHHHHcCCeEEEeC-CCCCCHHHHHHHHHHHHh-cCCCEEEEe
Confidence 444323345555666677788899998877652 222244444555665533 468999986
No 118
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=67.54 E-value=50 Score=24.76 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCceEEEEEECCCcchH------HHHHHHH---HHHHHcCceeeeecCCCC-C-C---------HHHHHHHHHHhcCCCC
Q 031035 38 KVPGLAVVIVGGRKDSQ------SYVSMKR---KACAEVGIKSFDIDLPEQ-V-S---------EAELISKVHELNVMPD 97 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~------~Y~~~k~---k~~~~~Gi~~~~~~l~~~-~-~---------~~el~~~I~~lN~D~~ 97 (167)
..|.+++|.+|-|.... .|.+... +....-+..+..+..+.. . + -+++-+.++++-+..+
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~ 145 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYG 145 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999875431 2333333 333344777777776543 1 1 1456677788777766
Q ss_pred CcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 98 VHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 98 V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
|.-+=+..++. ..+. . ... -||+||.-.|....
T Consensus 146 v~~vd~~~~~~-~~~~-~---~~~----~DgiHpn~~G~~~~ 178 (185)
T cd01832 146 AVHVDLWEHPE-FADP-R---LWA----SDRLHPSAAGHARL 178 (185)
T ss_pred CEEEecccCcc-cCCc-c---ccc----cCCCCCChhHHHHH
Confidence 66665554432 1110 0 011 39999988887554
No 119
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=67.39 E-value=36 Score=27.64 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=36.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC----CCCCHHHHHHHHHHhcCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP----EQVSEAELISKVHELNVM 95 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~----~~~~~~el~~~I~~lN~D 95 (167)
|.-+.=.++.+++++.... .+.|++.||.+..+... ....++++++.+++++-|
T Consensus 23 ~~l~~~i~~visn~~~~~~-----~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 80 (207)
T PLN02331 23 GRVNGDVVVVVTNKPGCGG-----AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD 80 (207)
T ss_pred CCCCeEEEEEEEeCCCChH-----HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCC
Confidence 3334444555666665443 67899999998765442 334578899999988666
No 120
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=67.30 E-value=36 Score=26.70 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 48 GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 48 g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
-+++-.....+...+.|++.|....+...... +.+...+.++.+-. ..||||++..+-
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~vdgiii~~~~ 66 (264)
T cd01574 9 LALHGPSSTLAAIESAAREAGYAVTLSMLAEA-DEEALRAAVRRLLA-QRVDGVIVNAPL 66 (264)
T ss_pred CCcccHHHHHHHHHHHHHHCCCeEEEEeCCCC-chHHHHHHHHHHHh-cCCCEEEEeCCC
Confidence 34556677788899999999999887754322 22344445555532 359999997553
No 121
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=66.58 E-value=26 Score=27.66 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=46.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+.|..|.+ ++-.|.+......+++||.|+....+..-|.+.+.+.+++..+. .+.-||-
T Consensus 4 ~V~IIMGS~-SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~-g~~viIA 63 (162)
T COG0041 4 KVGIIMGSK-SDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEER-GVKVIIA 63 (162)
T ss_pred eEEEEecCc-chHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHC-CCeEEEe
Confidence 455666754 45567778889999999999999999999999999999886554 4554543
No 122
>PRK09701 D-allose transporter subunit; Provisional
Probab=66.16 E-value=40 Score=27.99 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=42.4
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.+++|.-. .+|-...-.+...+.+++.|+.+..+..+...+.+.-.+.|+.+-.. .++||++.-
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~-~vDgiIi~~ 90 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAP 90 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 55655532 34445555577888899999998877544444555666777776544 599999963
No 123
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.01 E-value=51 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++-.....+...+.|++.|.....+.... +.++..+.++.+-. ..++||++...
T Consensus 12 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~-~~~dgiii~~~ 65 (269)
T cd06288 12 TPFAVEIILGAQDAAREHGYLLLVVNTGG--DDELEAEAVEALLD-HRVDGIIYATM 65 (269)
T ss_pred CccHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHH-cCCCEEEEecC
Confidence 44455556788899999999887665433 33444466666543 47899999743
No 124
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=65.59 E-value=22 Score=23.39 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 48 GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 48 g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
||.|....=..-....|++.| ..|+++.|..+-.+.|..|-+
T Consensus 12 GDePmT~aQ~syL~tL~e~Ag-----e~~~~~LtkaeAs~rId~L~~ 53 (57)
T PF11272_consen 12 GDEPMTGAQASYLKTLSEEAG-----EPFPDDLTKAEASERIDELQA 53 (57)
T ss_pred CCCCCcHHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHHHHH
Confidence 677754444444567788888 578999999999888888754
No 125
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=65.40 E-value=7.9 Score=35.21 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccC
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl 129 (167)
-.|+.-...+++-+||+.+..... ++.+ +++. .|.++.|++||+|=..++-+..+...++-.|+-.++
T Consensus 175 pqt~~Vl~Tra~~~g~~i~~~~~~------d~~~-l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al 242 (450)
T COG0403 175 PQTLDVLRTRAEGLGIEIEVVDAD------DLDD-LESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGAL 242 (450)
T ss_pred HHHHHHHHhhcccCceEEEEeccc------hhhh-hhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCE
Confidence 356777889999999999998765 2222 2333 577899999999988775445455555544544443
No 126
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.33 E-value=55 Score=25.70 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=35.9
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++-...+.+...+.|++.|+.+...... + .+ +-.+.+..+-....++||++.-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 15 QNPFFIEVLRGISAVANENGYDISLATGK-N-EE-ELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEecCC-C-cH-HHHHHHHHHHHHcCcCEEEEecC
Confidence 45666777788899999999998765322 2 22 33344444333456999999744
No 127
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.32 E-value=50 Score=26.32 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=38.4
Q ss_pred CCCceEEEEEECCCcchHH----HHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcCCCCCc
Q 031035 37 GKVPGLAVVIVGGRKDSQS----YVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVMPDVH 99 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~----Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~ 99 (167)
|..+...++..+.++.+.. =.+...+.|+.+||....+.++.+. -.+++.+.++++-+. .++
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~ 90 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVD 90 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCC
Confidence 6666666666665554421 2356678999999998888875521 125566666666543 444
No 128
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=65.21 E-value=45 Score=27.02 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=41.7
Q ss_pred EEEEEE-CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 42 LAVVIV-GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 42 Laii~v-g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++|.. -+++-....++...+.|++.|+.+....... +.++..+.|+.+-. ..|+||++.-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~i~~~~~-~~vdgiii~~ 63 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANG--DPAKQISQIENMIA-KGVDVLVIAP 63 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHH-cCCCEEEEec
Confidence 344443 2355566667788899999999988876432 45556677777664 4799999863
No 129
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=65.10 E-value=30 Score=28.06 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=39.6
Q ss_pred CCCceEEEEEECCCcchHH----HHHHHHHHHHHcCceeeeecCCC--CCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQS----YVSMKRKACAEVGIKSFDIDLPE--QVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~----Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
|..+..++...+.+..|-. -.+...+.|+.+||....+.++. +...+++.+.+.++-+. .+++|.
T Consensus 21 G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv 91 (218)
T TIGR03679 21 GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIV 91 (218)
T ss_pred CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEE
Confidence 7777555455565433311 23567889999999988888763 22334566777666444 555544
No 130
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=64.90 E-value=32 Score=27.49 Aligned_cols=52 Identities=13% Similarity=-0.012 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+|--....+...+.|++.|.....+....+ ++..+.+..+.....|+||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~---~~~~~~~~~~l~~~~vdgvi~~ 62 (269)
T cd06297 11 TEFYRRLLEGIEGALLEQRYDLALFPLLSL---ARLKRYLESTTLAYLTDGLLLA 62 (269)
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHHHHhcCCCEEEEe
Confidence 444555667889999999999888765432 2334556543445579999997
No 131
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.89 E-value=34 Score=28.16 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=36.8
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQLPL 107 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PL 107 (167)
++-.....+...+.|++.|..+...... .+.+.-.+.++.+-.. .+|+||++. |.
T Consensus 12 ~~~~~~~~~gi~~~~~~~g~~v~~~~~~--~~~~~~~~~i~~~~~~~~~vdgiIi~-~~ 67 (305)
T cd06324 12 EPFWNSVARFMQAAADDLGIELEVLYAE--RDRFLMLQQARTILQRPDKPDALIFT-NE 67 (305)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEeCC--CCHHHHHHHHHHHHHhccCCCEEEEc-CC
Confidence 4445556677889999999988776432 3444455666666443 379999995 43
No 132
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=64.85 E-value=47 Score=23.48 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCceEEEEEECCCcc-------hHHHHHHHHHHHHHc-----CceeeeecCCCCCC--------HHHHHHHHHHhcCCC
Q 031035 37 GKVPGLAVVIVGGRKD-------SQSYVSMKRKACAEV-----GIKSFDIDLPEQVS--------EAELISKVHELNVMP 96 (167)
Q Consensus 37 g~~P~Laii~vg~d~a-------s~~Y~~~k~k~~~~~-----Gi~~~~~~l~~~~~--------~~el~~~I~~lN~D~ 96 (167)
+..|.++++.+|.|.. ...|.....+..+.+ |..+..+..+.... ...+.+.++++.+.-
T Consensus 63 ~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd00229 63 KDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAEN 142 (187)
T ss_pred cCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHHc
Confidence 6789999999998743 244555444444444 66666666665432 356777777777776
Q ss_pred CCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 97 DVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 97 ~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
.....+...++....... -...=..||+||...|.-..
T Consensus 143 ~~~~~~~~~d~~~~~~~~-----~~~~~~~Dg~H~~~~G~~~~ 180 (187)
T cd00229 143 PAPSGVDLVDLAALLGDE-----DKSLYSPDGIHPNPAGHKLI 180 (187)
T ss_pred CCCcceEEEEhhhhhCCC-----ccccccCCCCCCchhhHHHH
Confidence 532222222222222111 12333469999988876544
No 133
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=64.81 E-value=48 Score=25.94 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=37.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++--........+++++.|+.+..... ..+.+...+.++.+... .|+||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~-~vdgiii~~~ 64 (267)
T cd06284 10 ANPFFSEILKGIEDEAREAGYGVLLGDT--RSDPEREQEYLDLLRRK-QADGIILLDG 64 (267)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEecC--CCChHHHHHHHHHHHHc-CCCEEEEecC
Confidence 4555666668889999999998866543 33444455666666555 6899999644
No 134
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=64.75 E-value=33 Score=27.48 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+|--....+...+.|++.|..+..+... +.++..+.++.+-. ..++||++.-+
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~i~~~~~-~~~dgiii~~~ 63 (289)
T cd01540 11 EPWFQTEWKFAKKAAKEKGFTVVKIDVP---DGEKVLSAIDNLGA-QGAKGFVICVP 63 (289)
T ss_pred CcHHHHHHHHHHHHHHHcCCEEEEccCC---CHHHHHHHHHHHHH-cCCCEEEEccC
Confidence 3444455567789999999887765432 34555667777654 56999999643
No 135
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=64.72 E-value=29 Score=25.61 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred eEEEEEECCC--cchHHHHHHHHHHHHHcCceeeeecCCCC-------------CCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVGGR--KDSQSYVSMKRKACAEVGIKSFDIDLPEQ-------------VSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg~d--~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~-------------~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+..+|.-..+ .-+...++...+.+++.|++++.+++.+. ...+++.+..+++.+- |||++-.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~a---D~iI~~s 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEA---DGIIFAS 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHS---SEEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecC---CeEEEee
Confidence 3444444434 45667788888899889999999999864 1234555555555444 6999999
Q ss_pred CCCCCCCH---HHHHhcCC
Q 031035 106 PLPKHINE---EKVLGEIS 121 (167)
Q Consensus 106 PLP~~id~---~~i~~~I~ 121 (167)
|...+-=. +.+++.+.
T Consensus 79 P~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 79 PVYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp EEBTTBE-HHHHHHHHTHH
T ss_pred cEEcCcCChhhhHHHHHhc
Confidence 99765332 34444443
No 136
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=63.99 E-value=28 Score=26.93 Aligned_cols=46 Identities=11% Similarity=0.333 Sum_probs=36.9
Q ss_pred EEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 43 AVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 43 aii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
.+++||||+.|..+.+.....-+++|--.-++... ..+=++.++++
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~----t~~~L~~Lr~l 109 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA----TEAALQRLRQL 109 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC----CHHHHHHHHHH
Confidence 47889999999999999999999998887777653 35566667765
No 137
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.86 E-value=55 Score=25.83 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++-...+.+...+.|++.|..+..+.. +.+++...+.++.+... .++||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~-~~dgiii~ 62 (263)
T cd06280 11 NPFFTAVSRAVEDAAYRAGLRVILCNT--DEDPEKEAMYLELMEEE-RVTGVIFA 62 (263)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHhC-CCCEEEEe
Confidence 456667778999999999988866533 33445566677777754 69999995
No 138
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=63.13 E-value=56 Score=25.26 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC---CCC
Q 031035 38 KVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL---PKH 110 (167)
Q Consensus 38 ~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL---P~~ 110 (167)
.+|+.++|.+|+.. +++.| +.....++.|+++..+..=. .+.+++.+.|+++-+....|=||.--=. +..
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~--~l~~~L~~~G~~v~~~~iv~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D 79 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQ--YLVERLTEAGHRLADRAIVK-DDIYQIRAQVSAWIADPDVQVILITGGTGFTGRD 79 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHH--HHHHHHHHCCCeEEEEEEcC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 46889999999843 33343 45667889999888765433 2567888999887443456766664322 222
Q ss_pred CCHHHHHhcCCCCCCcccC----CcccH---HHh------hccC--CCCCC-CCchHHHHHHHhhhc
Q 031035 111 INEEKVLGEISLEKDVDGF----HPLNI---GKL------AMKG--RDPLF-LPCTPKAIILYSCLI 161 (167)
Q Consensus 111 id~~~i~~~I~P~KDVDGl----~~~Nl---G~l------~~g~--~~~~~-~PcTp~avi~lL~~~ 161 (167)
+-.+.+.+.+ +|.++|+ +-.++ |+- ..|. ...-| +|--|.|+...++.+
T Consensus 80 ~t~eal~~l~--~~~l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~ 144 (163)
T TIGR02667 80 VTPEALEPLF--DKTVEGFGELFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKI 144 (163)
T ss_pred CcHHHHHHHH--CCcCCcHHHHHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHH
Confidence 2233333333 3666673 22222 222 1221 12223 688999987776653
No 139
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=62.96 E-value=12 Score=35.80 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
+.+.+|.+.++.++++++. |+++ ++.-||++... ...|+++||.- +-...++++=++.|+++.+.-
T Consensus 438 l~Dp~R~~a~e~I~~Lr~~-GI~v---vMiTGDn~~TA------~aIA~elGI~~----v~A~~~PedK~~iV~~lQ~~G 503 (673)
T PRK14010 438 LKDVIKDGLVERFRELREM-GIET---VMCTGDNELTA------ATIAKEAGVDR----FVAECKPEDKINVIREEQAKG 503 (673)
T ss_pred eecCCcHHHHHHHHHHHHC-CCeE---EEECCCCHHHH------HHHHHHcCCce----EEcCCCHHHHHHHHHHHHhCC
Confidence 4556789999999999776 8775 46669888754 45689999962 334567788888888887654
No 140
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=62.74 E-value=36 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=38.5
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++|-.....+...+.+++.|+.+.... ..-+.++..+.++++... +++||++.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~~~~~-~~dgii~~ 62 (268)
T cd06323 10 NNPFFVTLKDGAQKEAKELGYELTVLD--AQNDAAKQLNDIEDLITR-GVDAIIIN 62 (268)
T ss_pred cCHHHHHHHHHHHHHHHHcCceEEecC--CCCCHHHHHHHHHHHHHc-CCCEEEEc
Confidence 466666667788899999998887653 333556667788877665 59999985
No 141
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.70 E-value=54 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=35.7
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++|--....+...+.|++.|..+... ..+.+.+...+.++.+-. ..++|||+..+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~-~~~dgiii~~~ 64 (265)
T cd06285 10 TDTVMATMYEGIEEAAAERGYSTFVA--NTGDNPDAQRRAIEMLLD-RRVDGLILGDA 64 (265)
T ss_pred CCccHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHH-cCCCEEEEecC
Confidence 35566666778888899999876543 333344555566666544 35889998643
No 142
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.69 E-value=32 Score=28.30 Aligned_cols=52 Identities=6% Similarity=-0.141 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHHH--cCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAE--VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~--~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++--....+...+.|++ .|+.+... +.+.+.+.-.+.|+.+... .|+||++.
T Consensus 11 ~~~~~~~~~gi~~~a~~~~~g~~~~~~--~~~~~~~~q~~~i~~l~~~-~vdgiii~ 64 (303)
T cd01539 11 DTFISLVRKNLEDIQKENGGKVEFTFY--DAKNNQSTQNEQIDTALAK-GVDLLAVN 64 (303)
T ss_pred ChHHHHHHHHHHHHHHhhCCCeeEEEe--cCCCCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 44444555678888999 56655544 4444555556666666444 69999985
No 143
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=62.44 E-value=31 Score=27.16 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++-.....+...+.|++.|....... .+-+.++..+.++.+... .|+||++.-
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~i~~l~~~-~vdgiii~~ 63 (269)
T cd06275 11 NPFFAEVVRGVEQYCYRQGYNLILCN--TEGDPERQRSYLRMLAQK-RVDGLLVMC 63 (269)
T ss_pred cchHHHHHHHHHHHHHHcCCEEEEEe--CCCChHHHHHHHHHHHHc-CCCEEEEec
Confidence 44445555677888999998876543 333556666777777664 689999954
No 144
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.41 E-value=40 Score=26.55 Aligned_cols=53 Identities=6% Similarity=0.009 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++--....+.....|++.|..+..... +.+++...+.++.+- ...++||++.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~gy~~~~~~~--~~~~~~~~~~i~~l~-~~~~dgiii~ 62 (265)
T cd06290 10 ASPFYGRILKGMERGLNGSGYSPIIATG--HWNQSRELEALELLK-SRRVDALILL 62 (265)
T ss_pred CCchHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHH-HCCCCEEEEe
Confidence 4555555666777889999988766543 334555556666553 3358999986
No 145
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=62.21 E-value=61 Score=25.69 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ 79 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~ 79 (167)
+..+...++...+.+++.|++++.+.+++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 356777888899999999999999999864
No 146
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.57 E-value=54 Score=25.96 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++-...-.+...+.|++.|..+....- ..+.+...+.|+.+-+ ..|+||+++-
T Consensus 11 ~~~~~~~~~~i~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgii~~~ 63 (269)
T cd06281 11 NPLLAQLFSGAEDRLRAAGYSLLIANS--LNDPERELEILRSFEQ-RRMDGIIIAP 63 (269)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHH-cCCCEEEEec
Confidence 454555556788999999998776543 2344555666666654 4799999964
No 147
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.53 E-value=39 Score=26.77 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=31.9
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++--..-.+...+.|+++|..+....++...+.+...+.++.+-. ..++||++.
T Consensus 11 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiIi~ 64 (271)
T cd06321 11 NPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIA-AKVDLILLN 64 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHH-hCCCEEEEe
Confidence 444455566777888885555555544444455555566666543 347888774
No 148
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=61.09 E-value=65 Score=25.51 Aligned_cols=57 Identities=4% Similarity=0.028 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHHHHHc-CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 50 RKDSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
+|-....++...+.|++. |+.+...... .+.+.-.+.++.+-. ..|+||++.-+-+.
T Consensus 11 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~~~~-~~vdgiii~~~~~~ 68 (270)
T cd06308 11 DPWRAAMNDEIQREASNYPDVELIIADAA--DDNSKQVADIENFIR-QGVDLLIISPNEAA 68 (270)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCC--CCHHHHHHHHHHHHH-hCCCEEEEecCchh
Confidence 455566677888889986 8888766543 234444566666543 36899999744443
No 149
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=60.97 E-value=24 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=26.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS 81 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~ 81 (167)
...||++|.+.....|+++-+..|.+.|...-.+.++....
T Consensus 72 ~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~~~~~ 112 (130)
T PF08937_consen 72 SVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVYLPGLKD 112 (130)
T ss_dssp EEEEEE--TT----HHHHHHHHHHTTT---EEEEETT--SG
T ss_pred CEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 68999999999999999999999999999998888876543
No 150
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=60.31 E-value=46 Score=24.19 Aligned_cols=84 Identities=11% Similarity=-0.032 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHc-C--ceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCc
Q 031035 56 YVSMKRKACAEV-G--IKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHP 131 (167)
Q Consensus 56 Y~~~k~k~~~~~-G--i~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~ 131 (167)
|++....+++-+ | =+++.+.|..+.+.+++.+.++++=+. ++=+|++|..=++.+---+.....+.-..++.-++-
T Consensus 12 ~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG 91 (116)
T TIGR00824 12 AAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDVIAG 91 (116)
T ss_pred HHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEe
Confidence 344444444443 1 135666777777766665554333221 223799999999877655555555544557888888
Q ss_pred ccHHHhhc
Q 031035 132 LNIGKLAM 139 (167)
Q Consensus 132 ~NlG~l~~ 139 (167)
.|+.-+..
T Consensus 92 ~NLpmlle 99 (116)
T TIGR00824 92 VNLPLLLE 99 (116)
T ss_pred cCHHHHHH
Confidence 88877664
No 151
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=60.30 E-value=67 Score=23.74 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCceEEEEEECCCcc-----hHHHHH---HHHHHHHHcCceeeeecC--CCCCC---HHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRKD-----SQSYVS---MKRKACAEVGIKSFDIDL--PEQVS---EAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~a-----s~~Y~~---~k~k~~~~~Gi~~~~~~l--~~~~~---~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..|.+++|.+|.|.. ...|.+ ...+.+++.|..+..+.. |...+ .+.+.+.++++.+..++. +
T Consensus 63 ~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~ 138 (177)
T cd01822 63 HKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP----L 138 (177)
T ss_pred cCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc----E
Confidence 478999999998753 233433 444445555877776643 33322 356667777777665432 1
Q ss_pred CCCCCCCCHHHHHhcCCCC-CCcccCCcccHHHhhc
Q 031035 105 LPLPKHINEEKVLGEISLE-KDVDGFHPLNIGKLAM 139 (167)
Q Consensus 105 ~PLP~~id~~~i~~~I~P~-KDVDGl~~~NlG~l~~ 139 (167)
.|+. . ..+.. .|. =-.||+||.-.|.-..
T Consensus 139 ~d~~--~--~~~~~--~~~~~~~DgvHpn~~G~~~~ 168 (177)
T cd01822 139 VPFF--L--EGVAG--DPELMQSDGIHPNAEGQPII 168 (177)
T ss_pred echH--H--hhhhh--ChhhhCCCCCCcCHHHHHHH
Confidence 1221 0 01100 111 1369999998887554
No 152
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=59.28 E-value=53 Score=27.21 Aligned_cols=66 Identities=8% Similarity=0.104 Sum_probs=43.2
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
..+.++|...+++.+..+.+.-.+.+++.|+++..... +.. ..++...+.++.+. +.++|++..+-
T Consensus 132 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~i~~~-~pdaV~~~~~~ 198 (341)
T cd06341 132 GTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT--APDPTPQAQQAAAA-GADAIITVLDA 198 (341)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC--CCCHHHHHHHHHhc-CCCEEEEecCh
Confidence 35677665554457788888899999999998755433 322 23455555555433 57899887654
No 153
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=59.10 E-value=26 Score=26.43 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=40.6
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
.++|.++.. ++++++++++.+. .|...++..+|...+...+-.....|++.|+.-
T Consensus 75 ~~~~~~v~~---~~L~~~L~~~~~~---~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~ 129 (141)
T PRK11267 75 FIGNDPVTD---ETMITALDALTEG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLK 129 (141)
T ss_pred EECCccccH---HHHHHHHHHHHhc---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 367777753 5566666665432 366778888888888888889999999999964
No 154
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=59.05 E-value=99 Score=27.82 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=47.9
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceee----------------------eecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSF----------------------DIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~----------------------~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
-+.+++|-.+.-++. .....|++.|++.- .+.+....+.+.+.+.++.+-+|+
T Consensus 295 g~rvaivs~sGG~g~-----l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp 369 (447)
T TIGR02717 295 GNRVAIITNAGGPGV-----IATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDE 369 (447)
T ss_pred CCeEEEEECCchHHH-----HHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCC
Confidence 357998887754433 34566777777644 233444467889999999999999
Q ss_pred CCcEEEEeCCCCCCC
Q 031035 97 DVHGILVQLPLPKHI 111 (167)
Q Consensus 97 ~V~GIlvq~PLP~~i 111 (167)
+|+++++... |.+.
T Consensus 370 ~vd~Vlv~~~-~~~~ 383 (447)
T TIGR02717 370 NVDGVVVVLT-PTAM 383 (447)
T ss_pred CCCEEEEEcc-CCcc
Confidence 9999998876 4443
No 155
>PLN03202 protein argonaute; Provisional
Probab=57.94 E-value=52 Score=32.55 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+.+.++.++++....|.|.++.+-++..+..|-..|...|-+.||.+..+ .+......-+-+..-++|.-
T Consensus 536 ~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv-~~~~~~~q~~~NIalKiN~K 605 (900)
T PLN03202 536 VEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCI-APTRVNDQYLTNVLLKINAK 605 (900)
T ss_pred HHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEe-CccccchHHHHHHHHHHhhh
Confidence 44444455443334578888777655578899999999999999999988 44444555566666676654
No 156
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=57.41 E-value=22 Score=34.16 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=45.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHH
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (167)
.+.|. +..--|+++++.++.+.-+. .+.-+.-.+.+|+++++ +|.+.|+++||. -++|+++++.
T Consensus 616 v~TG~-l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~-----sKl~kA~~lgi~--------ii~E~~f~~l 681 (689)
T PRK14351 616 VFTGS-LSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQ-----SKRDDAEANDVP--------TLDEEEFEEL 681 (689)
T ss_pred EEccC-CCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCCh-----hHHHHHHHCCCe--------EecHHHHHHH
Confidence 34554 22223566666666652211 45677888999998873 588999999995 3478999998
Q ss_pred HHH
Q 031035 89 VHE 91 (167)
Q Consensus 89 I~~ 91 (167)
|++
T Consensus 682 l~~ 684 (689)
T PRK14351 682 LAE 684 (689)
T ss_pred HHh
Confidence 875
No 157
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=57.27 E-value=33 Score=27.60 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=35.0
Q ss_pred cCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHH
Q 031035 36 YGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEA 83 (167)
Q Consensus 36 ~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~ 83 (167)
.|+.|+|+.|-.|-- +|-.|+ .++|+.+|+..++.+|+.++-++
T Consensus 23 lgyev~LVTvnFGv~-d~~k~A---~~tA~~lgF~h~vl~Ldr~ile~ 66 (198)
T COG2117 23 LGYEVELVTVNFGVL-DSWKYA---RETAAILGFPHEVLQLDREILED 66 (198)
T ss_pred hCCCcEEEEEEeccc-cchhhH---HHHHHHhCCCcceeccCHHHHHH
Confidence 399999999999954 455554 57899999999999998755443
No 158
>PRK09739 hypothetical protein; Provisional
Probab=57.14 E-value=59 Score=25.50 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=36.4
Q ss_pred eEEEEEECCCcchHH--HHHHHHHHHHHcCceeeeecCCCC-------------------CCHHHHHHHHHHhcCCCCCc
Q 031035 41 GLAVVIVGGRKDSQS--YVSMKRKACAEVGIKSFDIDLPEQ-------------------VSEAELISKVHELNVMPDVH 99 (167)
Q Consensus 41 ~Laii~vg~d~as~~--Y~~~k~k~~~~~Gi~~~~~~l~~~-------------------~~~~el~~~I~~lN~D~~V~ 99 (167)
++.+|....++.|.+ =.+.-.+.+++.|.+++.+.|.+. ...+++.+.++++.+ -|
T Consensus 5 kiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---AD 81 (199)
T PRK09739 5 RIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLE---HD 81 (199)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHh---CC
Confidence 344555555444422 244445555555655555544321 113456666666655 47
Q ss_pred EEEEeCCCCC
Q 031035 100 GILVQLPLPK 109 (167)
Q Consensus 100 GIlvq~PLP~ 109 (167)
+|+++.|+-.
T Consensus 82 ~iV~~~P~y~ 91 (199)
T PRK09739 82 ALVFVFPLWW 91 (199)
T ss_pred EEEEECchhh
Confidence 9999999854
No 159
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=57.10 E-value=63 Score=25.43 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++--....+...+.+++.|.++....... +.+...+.++.+-. .+|+||++.-
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~l~~-~~vdgiii~~ 63 (264)
T cd06274 11 NRSFARIAKRLEALARERGYQLLIACSDD--DPETERETVETLIA-RQVDALIVAG 63 (264)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHH-cCCCEEEEcC
Confidence 44444555677788999999887764432 33444556665533 4689999963
No 160
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=57.01 E-value=41 Score=25.37 Aligned_cols=41 Identities=27% Similarity=0.562 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
|++.-++.++++|+++....+... +.+++.+.|+. .++|.+
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~-~~~~~~~~i~~------ad~I~~ 41 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDR-NDADILEAIRE------ADAIFL 41 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSC-GHHHHHHHHHH------SSEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeccCC-ChHHHHHHHHh------CCEEEE
Confidence 888899999999999888887665 45577777765 467776
No 161
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=57.00 E-value=37 Score=30.34 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHH-HHHHHHHHcCceeeeecCC------CCCCHHHHHHH
Q 031035 16 AVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVS-MKRKACAEVGIKSFDIDLP------EQVSEAELISK 88 (167)
Q Consensus 16 ~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~-~k~k~~~~~Gi~~~~~~l~------~~~~~~el~~~ 88 (167)
.++++|.+.++.-.. +++- -.+-+.++|+++..-.... .+...-+++|++++.+.+. +.++++|+.+.
T Consensus 140 ~~~~~i~~~~raa~~-~~~l----r~~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~~el~~~~~~v~~~ev~~~ 214 (452)
T cd00578 140 DVLRKIESWARAAAA-VATL----RGLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVRRIDEVSDEEVEEL 214 (452)
T ss_pred HHHHHHHHHHHHHHH-HHHh----hcCceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcHHHHHHHHHhCCHHHHHHH
Confidence 466667666653222 1111 1244778887764322111 3445678899999988774 34567778888
Q ss_pred HHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc---------CCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHH
Q 031035 89 VHELNVMPDVHGILVQLPLPKHINEEKVLGE---------ISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAII 155 (167)
Q Consensus 89 I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~---------I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi 155 (167)
++.+-+.-.+. +--..+.++.+... +--+++.|+++..-. ..+.+ .+..||.+.+.+
T Consensus 215 ~~~~~~~~~~~------~~~~~~~~e~l~~~ar~~~Al~~~~~~~~~~a~a~~C~-~~l~~---~~~~pcla~s~L 280 (452)
T cd00578 215 LEEYEENYDVV------LDAKGLTDESLRKAARLYLALRRLLEDGGLDAFTIQCF-EDLTD---LGQLPCLAEQRL 280 (452)
T ss_pred HHHHHhhccee------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEecch-hhhcc---cCcchhHHHHHh
Confidence 88776664332 11112333333332 334789999986543 33332 256788777654
No 162
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.87 E-value=60 Score=26.17 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|-.....+...+.|++.|.......- ..+++...+.++.+... .|+||++.
T Consensus 11 ~~~~~~~~~~gi~~~a~~~gy~~~~~~~--~~~~~~~~~~i~~l~~~-~vdgiil~ 63 (280)
T cd06315 11 KNGGILGVGEGVREAAKAIGWNLRILDG--RGSEAGQAAALNQAIAL-KPDGIVLG 63 (280)
T ss_pred CCcHHHHHHHHHHHHHHHcCcEEEEECC--CCCHHHHHHHHHHHHHc-CCCEEEEc
Confidence 3566667777888999999988766543 23445556777776554 59999996
No 163
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=56.85 E-value=54 Score=26.78 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcC-----ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 55 SYVSMKRKACAEVG-----IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 55 ~Y~~~k~k~~~~~G-----i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+.+....+++++| ..++++......+.+...+.+++|-+++.|+||+.
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 71 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVG 71 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEc
Confidence 45566666666664 22344444444556666677777766667777764
No 164
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.73 E-value=76 Score=26.79 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCceEEEEEE-CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIV-GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~v-g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..++++++.- -+++-....++...+.|++.|..+...... -+.+...+.|+.+-. ..|+||++.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~--~~~~~~~~~i~~l~~-~~vDGiIi~ 88 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN--GNEETQMSQIENMIN-RGVDVLVII 88 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCC--CCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 3566666664 346677777888999999999998877543 344556667776654 379999996
No 165
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.57 E-value=85 Score=27.45 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=56.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHH-HHHHHHHHHHHcCceeeee-cCCCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQS-YVSMKRKACAEVGIKSFDI-DLPEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~-Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~ 86 (167)
.+++-|+...+++-+. +..+ |.+. ++.|.+...... |.....+..++.|+++..+ ...++-+.+.+.
T Consensus 9 ~~i~~G~g~l~~l~~~----~~~~----g~~~---~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~ 77 (382)
T PRK10624 9 ETAYFGRGAIGALTDE----VKRR----GFKK---ALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVK 77 (382)
T ss_pred CeEEECcCHHHHHHHH----HHhc----CCCE---EEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHH
Confidence 4556676665444433 3333 4332 233343333333 7777888889999998877 366666777777
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
+.++.+.+. +++.|+=--= -+-+|.-++...
T Consensus 78 ~~~~~~~~~-~~D~IIaiGG-GS~iD~aK~ia~ 108 (382)
T PRK10624 78 EGVEVFKAS-GADYLIAIGG-GSPQDTCKAIGI 108 (382)
T ss_pred HHHHHHHhc-CCCEEEEeCC-hHHHHHHHHHHH
Confidence 777776653 5777774210 123565555443
No 166
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=55.95 E-value=63 Score=27.20 Aligned_cols=65 Identities=11% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+..++|..=++|+ |-|.+-. .--...+++|+++....++ .+++.+.++.+... ++.|.-|-.|.-
T Consensus 6 ~~~~~~~~gliG~-P~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~~-~~~G~nVT~P~K 70 (272)
T PRK12550 6 NKDTQLCISLAAR-PSNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRAL-GIRGCAVSMPFK 70 (272)
T ss_pred CCCceEEEEEEcc-chhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHhc-CCCEEEECcCCH
Confidence 3456765556774 4666655 6677889999999888885 35677777777543 699999999975
No 167
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=55.83 E-value=30 Score=25.23 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=39.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
.++|+++.. +++.+.+.++.++ .|...++..+|...+...+-.....|++.|+.
T Consensus 61 ~~~~~~v~~---~~L~~~l~~~~~~---~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~ 114 (122)
T TIGR02803 61 FVGNDPVAR---ETLGTALDALTEG---DKDTTIFFRADKTVDYGDLMKVMNLLRQAGYL 114 (122)
T ss_pred EECCccCCH---HHHHHHHHHHHhc---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 467777643 4555555555432 35667778888888888888999999999996
No 168
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=55.82 E-value=75 Score=24.96 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+++....+.+...+.|++.|..+....... +.++..+.|+.+.. ..++||++. |..
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~~~~-~~~dgiii~-~~~ 65 (265)
T cd06291 10 SNPFFSELARAVEKELYKKGYKLILCNSDN--DPEKEREYLEMLRQ-NQVDGIIAG-THN 65 (265)
T ss_pred CChhHHHHHHHHHHHHHHCCCeEEEecCCc--cHHHHHHHHHHHHH-cCCCEEEEe-cCC
Confidence 456777788888999999998887654332 23344566666544 368999995 543
No 169
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=55.57 E-value=11 Score=33.45 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=24.7
Q ss_pred eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 71 ~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
++++--|--.|.+++.+.+.+.|.|+++.|||+.+=-
T Consensus 46 ~~vv~k~~~~t~~~i~~~~~~an~~~~c~gvi~wMhT 82 (359)
T PF02610_consen 46 VKVVFKPVVTTPEEITRVCKEANADEDCDGVITWMHT 82 (359)
T ss_dssp SEEEE---B-SHHHHHHHHHHHHH-TTEEEEEEEESS
T ss_pred eEEEecCccCCHHHHHHHHHHhhccCCccEEeehhhh
Confidence 3334445556778899999999999999999987643
No 170
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=55.42 E-value=1.1e+02 Score=25.44 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCce-eeeecCC--CCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCH
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK-SFDIDLP--EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINE 113 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~-~~~~~l~--~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~ 113 (167)
+..|++++|-.... ....|.+.-.+.++++|.. +....++ ++.+.+++++.|.. -+||.+ .+=|.
T Consensus 26 ~~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~------ad~I~~-----~GGnq 93 (250)
T TIGR02069 26 GEDAIIVIITSASE-EPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSN------ATGIFF-----TGGDQ 93 (250)
T ss_pred CCCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhh------CCEEEE-----eCCCH
Confidence 56788888875443 3456888888999999994 6777774 23344566666654 468887 34455
Q ss_pred HHHHhcC
Q 031035 114 EKVLGEI 120 (167)
Q Consensus 114 ~~i~~~I 120 (167)
.++.+.+
T Consensus 94 ~~l~~~l 100 (250)
T TIGR02069 94 LRITSLL 100 (250)
T ss_pred HHHHHHH
Confidence 5555444
No 171
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=55.18 E-value=63 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=25.4
Q ss_pred CceEEEEEECCCcch----------HHH---HHHHHHHHHH--cCceeeeecCCC
Q 031035 39 VPGLAVVIVGGRKDS----------QSY---VSMKRKACAE--VGIKSFDIDLPE 78 (167)
Q Consensus 39 ~P~Laii~vg~d~as----------~~Y---~~~k~k~~~~--~Gi~~~~~~l~~ 78 (167)
.|.+++|.+|-|-.. ..| ++...+.+++ -|..+.....+.
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~ 117 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPP 117 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence 799999999887543 224 3445555555 566666665543
No 172
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=54.71 E-value=73 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+...+.+++.|.++....-. +++...+.++.+-.. +|+||++.
T Consensus 20 ~~gi~~~~~~~gy~~~~~~~~---~~~~~~~~~~~l~~~-~vdgiii~ 63 (260)
T cd06304 20 YEGLEKAEKELGVEVKYVESV---EDADYEPNLRQLAAQ-GYDLIFGV 63 (260)
T ss_pred HHHHHHHHHhcCceEEEEecC---CHHHHHHHHHHHHHc-CCCEEEEC
Confidence 356778888889887765432 334455666665553 58999994
No 173
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=54.02 E-value=25 Score=25.39 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHhccCCCceEEEEEECCCcch--------HHH--HHHHHHHHHHcCc-eeeeecCCCCC----CHHHHHHHHHHhcCC
Q 031035 31 LLSEKYGKVPGLAVVIVGGRKDS--------QSY--VSMKRKACAEVGI-KSFDIDLPEQV----SEAELISKVHELNVM 95 (167)
Q Consensus 31 ~l~~~~g~~P~Laii~vg~d~as--------~~Y--~~~k~k~~~~~Gi-~~~~~~l~~~~----~~~el~~~I~~lN~D 95 (167)
++.++ |....++++.-|+-... ..- .+-..++|+.+|+ ++....+|+.. +.+++.+.|.++-+.
T Consensus 20 ~~~~~-g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~ 98 (128)
T PF02585_consen 20 KLAEA-GHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIRE 98 (128)
T ss_dssp HHHHT-T-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHH
Confidence 34344 77777777777753311 111 1234677899999 88888887642 246666666666555
Q ss_pred CCCcEEEEeCCCCC-CCCHHHH
Q 031035 96 PDVHGILVQLPLPK-HINEEKV 116 (167)
Q Consensus 96 ~~V~GIlvq~PLP~-~id~~~i 116 (167)
-+.+-|+...|-.. |.|-..+
T Consensus 99 ~~p~~V~t~~~~~~gH~DH~~~ 120 (128)
T PF02585_consen 99 FRPDVVFTPDPDDGGHPDHRAV 120 (128)
T ss_dssp H-ESEEEEE-STTS-SHHHHHH
T ss_pred cCCCEEEECCCCCCCcHHHHHH
Confidence 44556777777666 6665444
No 174
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=53.86 E-value=94 Score=23.46 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=63.4
Q ss_pred eEEEEEECCCc------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC---CCCC
Q 031035 41 GLAVVIVGGRK------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL---PKHI 111 (167)
Q Consensus 41 ~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL---P~~i 111 (167)
+.++|.+|+.- +++.|. ....+++.|.+...+..-.+ +.+++.+.++++-+....|-|+.-==. +..+
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~--l~~~l~~~G~~v~~~~~v~D-d~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~ 78 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPA--LVELLEEAGHEVVAYEIVPD-DKDEIREALIEWADEDGVDLILTTGGTGLAPRDV 78 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHH--HHHHHHHcCCeeeeEEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcC
Confidence 45778888743 455553 66679999988776654333 557888888887653345655554222 2223
Q ss_pred CHHHHHhcCCCCCCcccCC------------cccHHHhhcc--CCCCCC-CCchHHHHHHHhhh
Q 031035 112 NEEKVLGEISLEKDVDGFH------------PLNIGKLAMK--GRDPLF-LPCTPKAIILYSCL 160 (167)
Q Consensus 112 d~~~i~~~I~P~KDVDGl~------------~~NlG~l~~g--~~~~~~-~PcTp~avi~lL~~ 160 (167)
-.+.+.+.+ .|.++|+. +..+++...| ++.+-| +|.-|.|++..++.
T Consensus 79 t~~al~~~~--~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g~~~~~~v~~LPG~P~aa~~~~~~ 140 (152)
T cd00886 79 TPEATRPLL--DKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFNLPGSPKAVREALEV 140 (152)
T ss_pred cHHHHHHHh--CCcCccHHHHHHHhhcccCCcEEEechhheEECCEEEEECCCCHHHHHHHHHH
Confidence 233344444 36667652 1222222111 112333 58888888766654
No 175
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.68 E-value=92 Score=23.26 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=54.7
Q ss_pred CCCceEEEEEECCCc------chHHHHHHHHHHHH---H--cCceeeeecCCCC------------CCHHHHHHHHHHhc
Q 031035 37 GKVPGLAVVIVGGRK------DSQSYVSMKRKACA---E--VGIKSFDIDLPEQ------------VSEAELISKVHELN 93 (167)
Q Consensus 37 g~~P~Laii~vg~d~------as~~Y~~~k~k~~~---~--~Gi~~~~~~l~~~------------~~~~el~~~I~~lN 93 (167)
..+|.+++|.+|.|. ....|.+...+..+ + -|..+.....+.. ...+++.+.++++-
T Consensus 54 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 133 (189)
T cd01825 54 ALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVA 133 (189)
T ss_pred hCCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCCCCcccCCcHHHHHHHHHHHH
Confidence 357999999999763 33455555544443 3 3565555554321 12356677777777
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHhcCCC-CCCcccCCcccHHHhhcc
Q 031035 94 VMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHPLNIGKLAMK 140 (167)
Q Consensus 94 ~D~~V~GIlvq~PLP~~id~~~i~~~I~P-~KDVDGl~~~NlG~l~~g 140 (167)
+...|.=|=+..++..+ .. ......+ .-..||+||.-.|.-..+
T Consensus 134 ~~~~v~~vd~~~~~~~~-~~--~~~~~~~~~~~~Dg~Hp~~~G~~~~a 178 (189)
T cd01825 134 KEEGIAFWDLYAAMGGE-GG--IWQWAEPGLARKDYVHLTPRGYERLA 178 (189)
T ss_pred HHcCCeEEeHHHHhCCc-ch--hhHhhcccccCCCcccCCcchHHHHH
Confidence 77554333233333322 10 1111112 224699999888875543
No 176
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=53.64 E-value=74 Score=28.37 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=47.1
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|...++- ...-++...+.+++.|+.... ..++.+.++.++...++++....+.+.|++...
T Consensus 176 ~Vaii~~~~~y-G~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~~ 241 (458)
T cd06375 176 YVSTVASEGDY-GETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFTR 241 (458)
T ss_pred EEEEEEeCchH-HHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEecC
Confidence 57777665543 455577788889999988653 446666667888889998876677888888654
No 177
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=53.61 E-value=93 Score=23.32 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=52.1
Q ss_pred CCceEEEEEECCCcch-----HHHHH---HHHHHHHHcCceeeeecCCCCC-------------CHHHHHHHHHHhcCCC
Q 031035 38 KVPGLAVVIVGGRKDS-----QSYVS---MKRKACAEVGIKSFDIDLPEQV-------------SEAELISKVHELNVMP 96 (167)
Q Consensus 38 ~~P~Laii~vg~d~as-----~~Y~~---~k~k~~~~~Gi~~~~~~l~~~~-------------~~~el~~~I~~lN~D~ 96 (167)
.+|.+++|.+|.|... ..|.+ ...+.+.+.|..+.....++.. ...++-+.++++-+..
T Consensus 58 ~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~ 137 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYAREN 137 (183)
T ss_pred cCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHc
Confidence 4789999999887643 23444 3446666668876665543221 1235555666666664
Q ss_pred CCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhcc
Q 031035 97 DVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMK 140 (167)
Q Consensus 97 ~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g 140 (167)
+|.=|=+...+.++-. . ..+..=-.||+||.-.|.-..+
T Consensus 138 ~v~~vd~~~~~~~~~~-~----~~~~~~~~DgvHp~~~Gy~~~a 176 (183)
T cd04501 138 GLLFLDFYSPLLDERN-V----GLKPGLLTDGLHPSREGYRVMA 176 (183)
T ss_pred CCCEEechhhhhcccc-c----cccccccCCCCCCCHHHHHHHH
Confidence 4332222222222111 0 1111112489999888765443
No 178
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=53.49 E-value=1e+02 Score=24.39 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=44.6
Q ss_pred eEEEEEECCCcchHHH--HHHHHHHHHHcCceeeeecCCCC---------CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 41 GLAVVIVGGRKDSQSY--VSMKRKACAEVGIKSFDIDLPEQ---------VSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y--~~~k~k~~~~~Gi~~~~~~l~~~---------~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
++.+|.-..++.|.+. ++...+.+++.|.+++.+.+.+- ....++.+.++++.+ -|||++-.|...
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~---AD~iIi~tP~Y~ 78 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQ---ADGLIVATPVYK 78 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHH---CCEEEEECCccC
Confidence 3444444455555443 34455556667888887765421 001355555555544 479999999986
Q ss_pred CCCHHHHHhcCC
Q 031035 110 HINEEKVLGEIS 121 (167)
Q Consensus 110 ~id~~~i~~~I~ 121 (167)
+-=.-.+.+.||
T Consensus 79 ~s~pg~LKn~iD 90 (191)
T PRK10569 79 ASFSGALKTLLD 90 (191)
T ss_pred CCCCHHHHHHHH
Confidence 554444555554
No 179
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.10 E-value=1.2e+02 Score=25.51 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=44.4
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.+.++|. .+++....+.+.....+++.|+++... .++.. ..++...|.++.+ ..++.|++...-+
T Consensus 145 ~~v~~l~-~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~i~~l~~-~~~d~v~~~~~~~ 210 (347)
T cd06340 145 KTVALVH-EDTEFGTSVAEAIKKFAKERGFEIVEDISYPAN--ARDLTSEVLKLKA-ANPDAILPASYTN 210 (347)
T ss_pred ceEEEEe-cCchHhHHHHHHHHHHHHHcCCEEEEeeccCCC--CcchHHHHHHHHh-cCCCEEEEcccch
Confidence 4566554 567778888999999999999988643 34432 3466777777643 4577888765433
No 180
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=53.00 E-value=19 Score=31.98 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=61.5
Q ss_pred HhccCCCceEEEEEECCC-----cchHHHHHHHHHHHHHcCceeeeecCCCC----------------------------
Q 031035 33 SEKYGKVPGLAVVIVGGR-----KDSQSYVSMKRKACAEVGIKSFDIDLPEQ---------------------------- 79 (167)
Q Consensus 33 ~~~~g~~P~Laii~vg~d-----~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~---------------------------- 79 (167)
+++ |....=.-+...++ --|..+.+--++.|+.+||.++.+.|.+.
T Consensus 24 k~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~ 102 (356)
T COG0482 24 KEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKE 102 (356)
T ss_pred HHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHH
Confidence 344 66554444444442 24667888899999999999999988544
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD 125 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KD 125 (167)
+....+++...+|++|-=.+|--+..=-... ...+...+++.||
T Consensus 103 iKF~~~l~~a~~lgad~iATGHYar~~~~~~--~~~l~r~~D~~KD 146 (356)
T COG0482 103 IKFKALLDYAKELGADYIATGHYARQREDEG--IELLLRGVDLNKD 146 (356)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeeEeeecCCc--ccccccCCCcccc
Confidence 3346778888889999888886554332222 4567777777777
No 181
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=52.87 E-value=14 Score=22.37 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=28.9
Q ss_pred cCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~ 164 (167)
|+++..+-+++.| .+..-|-|..-|.++++.+|+.
T Consensus 8 gvs~~tvs~~l~g--~~~vs~~~~~~i~~~~~~l~~~ 42 (52)
T cd01392 8 GVSVATVSRVLNG--KPRVSEETRERVLAAAEELGYR 42 (52)
T ss_pred CcCHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhCCC
Confidence 6778888888887 5566788999999999999863
No 182
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=52.85 E-value=60 Score=27.76 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=41.3
Q ss_pred eEEEEEE-CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIV-GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~v-g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++|.- .++|=-....+...+.|++.|+++... .|.+.+.++-.+.|+.+-. ..|+||++.
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~-~~~~~d~~~q~~~i~~li~-~~vdgIiv~ 87 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYD-GPTEPSVSGQVQLINNFVN-QGYNAIIVS 87 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEE-CCCCCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 5655543 234544555667899999999988753 4555455555577776654 469999996
No 183
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=52.59 E-value=49 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCCC-ceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 25 IAEEVRLLSEKYGKV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 25 lk~~v~~l~~~~g~~-P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
+..+.+-+.+.+|++ |++.+|-.-=|+. ....|+++||+
T Consensus 31 f~rk~~lYek~~grk~~r~ivVtp~id~~-------a~~~A~~LGIe 70 (70)
T PF07788_consen 31 FKRKAELYEKVHGRKVDRLIVVTPYIDDR-------AKEMAEELGIE 70 (70)
T ss_pred HHHHHHHHHHHHCCCcceEEEEEeecCHH-------HHHHHHHhCCC
Confidence 344444444445777 8887776654443 67789999985
No 184
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=52.04 E-value=84 Score=23.52 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=57.6
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC---CCCCCHHHHHhcCCCCCCcccCC-----
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL---PKHINEEKVLGEISLEKDVDGFH----- 130 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL---P~~id~~~i~~~I~P~KDVDGl~----- 130 (167)
......++.|+++..+..-.+ +.+++.+.|+++-+ +.|-|++-==. +...-.+.+.+.. +.-+.|+-
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~D-d~~~i~~~l~~~~~--~~DliIttGG~g~g~~D~t~~ai~~~g--~~~~~gv~~~~~~ 105 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPD-DPEEIREILRKAVD--EADVVLTTGGTGVGPRDVTPEALEELG--EKEIPGFGEYFTA 105 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCC-CHHHHHHHHHHHHh--CCCEEEECCCCCCCCCccHHHHHHHhC--cEEEeeeccccch
Confidence 467778889998887764433 46788888888754 46777776432 2222223333332 55666762
Q ss_pred -cccHHHhhc----cCCCCCC-CCchHHHHHHHhhhc
Q 031035 131 -PLNIGKLAM----KGRDPLF-LPCTPKAIILYSCLI 161 (167)
Q Consensus 131 -~~NlG~l~~----g~~~~~~-~PcTp~avi~lL~~~ 161 (167)
..+-|+-.. ++ ..-| +|..|.++...++.+
T Consensus 106 ~~~~PG~~~~~~~~~~-~~v~~LPG~P~aa~~~~~~~ 141 (144)
T TIGR00177 106 VLSRPGKPATAGVRGG-TLIFGLPGNPVSALVTFEVL 141 (144)
T ss_pred hhCCCCCceEEEEECC-EEEEECCCCHHHHHHHHHHH
Confidence 223222111 21 2333 799999999888765
No 185
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.94 E-value=74 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
+++-.....+.....|++.|+++..+... -+.++-.+.++.+-. ..++||++. |.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~~~~-~~~dgiii~-~~ 64 (277)
T cd06319 10 RIPFWQIMGRGVKSKAKALGYDAVELSAE--NSAKKELENLRTAID-KGVSGIIIS-PT 64 (277)
T ss_pred CchHHHHHHHHHHHHHHhcCCeEEEecCC--CCHHHHHHHHHHHHh-cCCCEEEEc-CC
Confidence 35555556677888899999888766432 344445567777654 469999874 44
No 186
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=51.88 E-value=62 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcc-----------------------hHHHHHHHHHHHHHcCceeeee
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKD-----------------------SQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~a-----------------------s~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
.+..+++|+-++.|++ ..|...||.++.-|= ...|.+...+.|+++|+.+...
T Consensus 96 ~Ey~dNlr~iv~~lks---~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 96 EEYKDNLRKIVSHLKS---LSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHHHhhc---cCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 4567889998888864 469999999987652 3468899999999999987655
No 187
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=51.67 E-value=22 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 77 PEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 77 ~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+...+-+++.+.|+++++|++|.+|++..--|
T Consensus 19 ~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~ 50 (177)
T cd07014 19 QGNVSGDTTAAQIRDARLDPKVKAIVLRVNSP 50 (177)
T ss_pred CCCcCHHHHHHHHHHHhcCCCceEEEEEeeCC
Confidence 44567899999999999999999999986433
No 188
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=51.48 E-value=81 Score=25.67 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=29.4
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+|--....+...+.|++.|.....+..+.+.+.+.-.+.|+.+.+. .++||++.
T Consensus 10 ~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~-~vdgiIi~ 63 (302)
T TIGR02637 10 NPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQ-KVDAIAIS 63 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 4444444566777777777422222222233444555666666543 47787774
No 189
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=51.38 E-value=12 Score=25.60 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 60 KRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 60 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
--+.+++.|++.....+. +..+++.+.++.+.. .++.|+-|-+|.-.
T Consensus 15 hn~~f~~~g~~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~~VT~P~K~ 61 (83)
T PF08501_consen 15 HNAAFEALGLDAVYIPFE--VEPEDLEDFLDALRA-PNFRGLNVTMPHKE 61 (83)
T ss_dssp HHHHHHHTTSSEEEEEEE--TSTTCHHHHHHHHHH-TTESEEEE-TTSTT
T ss_pred HHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHhc-CCCCeeeecchHHH
Confidence 345678999988777653 334566666666666 88999999999653
No 190
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.33 E-value=48 Score=28.07 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=41.0
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC----CCHHHHHHHHHHhcCCC---CCcEEEEeCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ----VSEAELISKVHELNVMP---DVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~----~~~~el~~~I~~lN~D~---~V~GIlvq~P 106 (167)
.-+++||......+=.=..+...+ -+-.++.+.+|.. -..+++.+.|+++|+.. .+|.|+|-+=
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~----r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RG 84 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKR----RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRG 84 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHH----hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecC
Confidence 347888876544433333333333 3333444444444 47899999999999887 7999999654
No 191
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=50.89 E-value=98 Score=24.70 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHc-CceeeeecCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV-GIKSFDIDLPE 78 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~ 78 (167)
+..+++++|=...+ ....|.++..++.+++ |+++......+
T Consensus 29 ~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~ 70 (212)
T cd03146 29 KARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFD 70 (212)
T ss_pred cCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccC
Confidence 35678887766655 4567999999999999 99998887643
No 192
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=50.67 E-value=93 Score=22.48 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHc-C--ceeeeecCCCCCCHHHHHHHHHH-hcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCC
Q 031035 55 SYVSMKRKACAEV-G--IKSFDIDLPEQVSEAELISKVHE-LNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130 (167)
Q Consensus 55 ~Y~~~k~k~~~~~-G--i~~~~~~l~~~~~~~el~~~I~~-lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~ 130 (167)
.|++...+.++.+ | -.+..+.++.+.+.+++.+.+++ +.+-++-+|++|+-=|+.+--.+.......-..++.-++
T Consensus 10 ~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~vis 89 (122)
T cd00006 10 GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIA 89 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEE
Confidence 4555666666665 3 24556667776666555544443 222233469999988876554333322222115677778
Q ss_pred cccHHHhhc
Q 031035 131 PLNIGKLAM 139 (167)
Q Consensus 131 ~~NlG~l~~ 139 (167)
-.|+.-+..
T Consensus 90 G~nlpmlle 98 (122)
T cd00006 90 GVNLPMLLE 98 (122)
T ss_pred ccCHHHHHH
Confidence 788876653
No 193
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=50.32 E-value=86 Score=25.70 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=39.3
Q ss_pred EEEEEECCCcc---hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 42 LAVVIVGGRKD---SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 42 Laii~vg~d~a---s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
++++..|.-.+ ...-.+...+.+++.|+++..++-.. ++++..+.|+++-++ ..+.|+.
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~--~~~~~~~~i~~~~~~-g~dlIi~ 63 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVP--EGADAERVLRELAAQ-GYDLIFG 63 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCC--chHhHHHHHHHHHHc-CCCEEEE
Confidence 56666654322 23334677788888999888776432 567888888887544 6888888
No 194
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=50.17 E-value=22 Score=34.08 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 18 a~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
.+.+|.++++.++++++. |++. ++.-||++.... ..|+++||+- +-...++++=++.|+++.+.-
T Consensus 443 ~D~~R~~~~eai~~Lr~~-GI~v---vMiTGDn~~TA~------aIA~elGId~----v~A~~~PedK~~iV~~lQ~~G 507 (679)
T PRK01122 443 KDIVKPGIKERFAELRKM-GIKT---VMITGDNPLTAA------AIAAEAGVDD----FLAEATPEDKLALIRQEQAEG 507 (679)
T ss_pred eccCchhHHHHHHHHHHC-CCeE---EEECCCCHHHHH------HHHHHcCCcE----EEccCCHHHHHHHHHHHHHcC
Confidence 445688888889998766 7763 455688876544 4588999963 234567777788888887663
No 195
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=49.61 E-value=38 Score=25.82 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC---CCCHHHHHHHHHHhcCCCC
Q 031035 21 IRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE---QVSEAELISKVHELNVMPD 97 (167)
Q Consensus 21 i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~---~~~~~el~~~I~~lN~D~~ 97 (167)
++.++++-++.|++. |+ +++++. ||++.. ....++++||.-..+ +.. .-.++-+...+++|+.++.
T Consensus 128 ~~~~~~~~l~~L~~~-Gi--~~~i~T-GD~~~~------a~~~~~~lgi~~~~v-~a~~~~kP~~k~~~~~i~~l~~~~~ 196 (215)
T PF00702_consen 128 LRPGAKEALQELKEA-GI--KVAILT-GDNEST------ASAIAKQLGIFDSIV-FARVIGKPEPKIFLRIIKELQVKPG 196 (215)
T ss_dssp BHTTHHHHHHHHHHT-TE--EEEEEE-SSEHHH------HHHHHHHTTSCSEEE-EESHETTTHHHHHHHHHHHHTCTGG
T ss_pred chhhhhhhhhhhhcc-Cc--ceeeee-cccccc------ccccccccccccccc-cccccccccchhHHHHHHHHhcCCC
Confidence 355667777778665 55 444443 765554 345678899932111 111 1123456888899887766
No 196
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=49.46 E-value=99 Score=22.40 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=38.2
Q ss_pred CCCceEEEEEECCCcc---hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 37 GKVPGLAVVIVGGRKD---SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 37 g~~P~Laii~vg~d~a---s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+..|.++|=+-|.... ...==+.|.+.|+++||....+.....-+.+++.+.|++
T Consensus 67 ~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 67 DGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred CCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 5577777655554221 122223577899999999998887777788888888864
No 197
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.20 E-value=1.1e+02 Score=24.55 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.+|-.....+...+.|++.|..+....... +++.++.+ ....++||++. |.+
T Consensus 15 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~----~~~~~dgiii~-~~~ 66 (283)
T cd06279 15 SDPVASQFLAGVAEVLDAAGVNLLLLPASS---EDSDSALV----VSALVDGFIVY-GVP 66 (283)
T ss_pred cCccHHHHHHHHHHHHHHCCCEEEEecCcc---HHHHHHHH----HhcCCCEEEEe-CCC
Confidence 466667788889999999999988765432 33333332 24578999995 444
No 198
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=48.97 E-value=99 Score=22.32 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHhccCCCceEEEEE-ECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH-HhcCCCCCcEEEEe
Q 031035 30 RLLSEKYGKVPGLAVVI-VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH-ELNVMPDVHGILVQ 104 (167)
Q Consensus 30 ~~l~~~~g~~P~Laii~-vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~-~lN~D~~V~GIlvq 104 (167)
+.|.++ |.+ +++.|. -.++..+....+.-..+|++.|+.+....+....+......... .+.+- ..+||++.
T Consensus 2 ~~L~~~-G~r-~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~ 75 (160)
T PF13377_consen 2 DYLIER-GHR-RIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICS 75 (160)
T ss_dssp HHHHHT-T-S-SEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEES
T ss_pred hHHHHC-CCC-eEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEc
Confidence 345455 432 334343 23344555566667789999999998888876666544433322 23221 56899983
No 199
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=48.94 E-value=93 Score=24.60 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=37.9
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++-.....+...+.|++.|+.+....- ....+.-.+.++.+-. ..|+||++.-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgii~~~ 63 (273)
T cd01541 10 SDYIFPSIIRGIESVLSEKGYSLLLAST--NNDPERERKCLENMLS-QGIDGLIIEP 63 (273)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHH-cCCCEEEEec
Confidence 3555566667888999999999876543 3344555667777765 4699999963
No 200
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=48.60 E-value=68 Score=26.39 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCceEEEEEECCCcchHHHH----HHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 38 KVPGLAVVIVGGRKDSQSYV----SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~----~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
..|...+..+.++.+|-.|- +.....|+.+||....+..+.. .++++.+..+.|. +-.|+||.
T Consensus 24 ~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~-~e~~~~~l~~~l~-~~gv~~vv 90 (222)
T TIGR00289 24 HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE-EEKEVEDLAGQLG-ELDVEALC 90 (222)
T ss_pred CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc-hhHHHHHHHHHHH-HcCCCEEE
Confidence 35666666667665554442 5778899999999887776653 4566666666663 22455443
No 201
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=48.54 E-value=97 Score=28.17 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=44.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|.. ++.-.....+...+.+++.||.+...+ ++...++.++...+.++.. .+.+.|++...
T Consensus 189 ~VaiI~~-dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~-~~a~vVvl~~~ 253 (510)
T cd06364 189 WVGTIAA-DDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQN-STAKVIVVFSS 253 (510)
T ss_pred EEEEEEe-cCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHh-cCCeEEEEEeC
Confidence 3555555 455567777888899999999876443 4443467788888888854 66788888654
No 202
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=48.26 E-value=1.3e+02 Score=23.51 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++-.....+...+.|++.|........+ ++++.++. + ...+|+||++.-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~---l-~~~~vdgii~~~ 59 (261)
T cd06272 10 SRVALTELVTGINQAISKNGYNMNVSITP---SLAEAEDL---F-KENRFDGVIIFG 59 (261)
T ss_pred CchhHHHHHHHHHHHHHHcCCEEEEEecc---cHHHHHHH---H-HHcCcCEEEEeC
Confidence 34555556678889999999888777544 34444433 3 234699999963
No 203
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=48.09 E-value=1.7e+02 Score=27.46 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=50.9
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHI 111 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i 111 (167)
.+.|..|. .++.-.++...+.++++||.++....+..-+.+++.+.+++..+. .+.-||.--=+-.|+
T Consensus 412 ~v~i~~gs-~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~-~~~v~i~~ag~~~~l 479 (577)
T PLN02948 412 LVGIIMGS-DSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSR-GLQVIIAGAGGAAHL 479 (577)
T ss_pred eEEEEECc-hhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHC-CCCEEEEEcCccccc
Confidence 35566663 456667778899999999999999999999999999999887644 356666654443443
No 204
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.02 E-value=78 Score=25.38 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.-.+...+.|++.|..+...... .+.+...+.++.+.. ..|+||++.
T Consensus 16 ~~~~gi~~~~~~~G~~~~~~~~~--~d~~~~~~~i~~~~~-~~vdgiii~ 62 (272)
T cd06313 16 QGKQAADEAGKLLGVDVTWYGGA--LDAVKQVAAIENMAS-QGWDFIAVD 62 (272)
T ss_pred HHHHHHHHHHHHcCCEEEEecCC--CCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 33456777888888887776432 255556667777664 468899885
No 205
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=47.50 E-value=93 Score=25.79 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=48.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
..+....++|=-....+...+.++++|........+...+.+.=++.|+.+ -...++||+|.-+=|..+.
T Consensus 37 ~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~-ia~~~daIiv~~~d~~~~~ 106 (322)
T COG1879 37 GVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDL-IAQGVDAIIINPVDPDALT 106 (322)
T ss_pred EEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHH-HHcCCCEEEEcCCChhhhH
Confidence 333444556666677778899999999855555555555556666667766 4678999999877666553
No 206
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=47.46 E-value=55 Score=29.40 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh--cCCCCCc
Q 031035 22 RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL--NVMPDVH 99 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l--N~D~~V~ 99 (167)
.+++|.--+.+... |-.|-.-+ +|-.|.+..+... +|-..+.+. ++.+|+.+..++| ..+..+|
T Consensus 226 ~d~lK~lgAA~Ats-gs~~m~Hi--~GvTPEa~~~~~a-------~~~~~e~i~----i~~~dl~~~~~~l~~~~~~~~D 291 (400)
T PF04412_consen 226 EDDLKALGAAMATS-GSVAMFHI--VGVTPEAPTLEAA-------FGGKAERIT----ITDADLEEVYEELNTAGDEKVD 291 (400)
T ss_pred HHHHHHHhhhhhcc-cceeeEEE--eCCCCCCCcchhh-------hcCCceEEE----eCHHHHHHHHHHhccCCCCCCC
Confidence 35566655555433 44443333 3444544444322 121134443 4679999999999 6667788
Q ss_pred EEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCC---CCCCCCchHHHHHHHhhhccCC
Q 031035 100 GILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGR---DPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 100 GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~---~~~~~PcTp~avi~lL~~~~~~ 164 (167)
-+.+=-| |++.+++.+ +.+++.|.. ...++=||+.++.+..+++|..
T Consensus 292 ~V~lGcP---H~S~~El~~---------------ia~ll~gr~~~~~~~~~i~t~~~v~~~a~~~G~~ 341 (400)
T PF04412_consen 292 LVALGCP---HLSLEELRE---------------IAELLEGRKVHPNVPLWITTSRAVYELAERMGYV 341 (400)
T ss_pred EEEECCC---CCCHHHHHH---------------HHHHHhCCCCCCCceEEEECCHHHHHHHHhCCHH
Confidence 8888776 888888765 455555532 2235668999999988887643
No 207
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=47.38 E-value=70 Score=23.87 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHh--------c-CCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCccc
Q 031035 59 MKRKACAEVGIKSFDIDLPE-QVSEAELISKVHEL--------N-VMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~l--------N-~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDG 128 (167)
...+.-++.||.++.+++|. ..|.+|+.+.+..- = .+++ .=+++.+|--..+|..++.+.+.. ++.-
T Consensus 3 ~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~~~~~~~K~l~~~~~~-~~~~v~~~~~~~ld~~kl~~~lg~--~l~~ 79 (148)
T cd04333 3 RVRAFLAARGLDLEVIELPESTRTAALAAEALGCEPGQIAKSLVFRVDD-EPVLVVTSGDARVDNKKFKALFGE--KLKM 79 (148)
T ss_pred HHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCCChhHEEEEEEEEECC-cEEEEEEeCCcccCHHHHHHHhCC--Ccee
Confidence 44566677788888888874 34445555544210 0 1222 347788888899999999999865 6666
Q ss_pred CCcccHHHhhccCCCCCCCC
Q 031035 129 FHPLNIGKLAMKGRDPLFLP 148 (167)
Q Consensus 129 l~~~NlG~l~~g~~~~~~~P 148 (167)
.++..+-+++ |- ..+++|
T Consensus 80 a~~~~~~~~~-g~-~~G~v~ 97 (148)
T cd04333 80 ADAEEVRELT-GF-AIGGVC 97 (148)
T ss_pred CCHHHHHHHH-CC-CCCcCC
Confidence 6666665544 32 344443
No 208
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.37 E-value=64 Score=21.36 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCC
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVS 81 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~ 81 (167)
|..++=...|.+++.||.++++..|..++
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P~~i~ 38 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTPREIS 38 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCChhcc
Confidence 67777788899999999999999998865
No 209
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.48 E-value=83 Score=24.73 Aligned_cols=53 Identities=8% Similarity=0.010 Sum_probs=35.1
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++-...-++...+.|++.|+++...... -+.+.-.+.++.+... +++||++.-
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~-~vdgiii~~ 63 (267)
T cd06322 11 HPFYIELANAMKEEAKKQKVNLIVSIAN--QDLNKQLSDVEDFITK-KVDAIVLSP 63 (267)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEcC
Confidence 4444455577888899999988765432 2444555666666544 699999963
No 210
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=46.39 E-value=36 Score=27.44 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 77 PEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 77 ~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
+...+-+++.+.|+++.+|++|.||++..-=|..
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg 59 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG 59 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC
Confidence 3456779999999999999999999999876654
No 211
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=46.38 E-value=33 Score=32.77 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=43.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhc--cCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEK--YGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~--~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
..+.|.- ..-=|+++++.++.+--. ..+..+.-.+.+|++++ +|.+.|+++||. -++++++++
T Consensus 596 ~v~TG~l-~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~g------sK~~kA~~lgI~--------ii~E~~f~~ 660 (665)
T PRK07956 596 VVLTGTL-EQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAG------SKLAKAQELGIE--------VLDEEEFLR 660 (665)
T ss_pred EEEeCCC-CCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCC------hHHHHHHHcCCe--------EEcHHHHHH
Confidence 3455542 221256666666654211 14567788899999876 489999999985 247789988
Q ss_pred HHHH
Q 031035 88 KVHE 91 (167)
Q Consensus 88 ~I~~ 91 (167)
.|.+
T Consensus 661 ~l~~ 664 (665)
T PRK07956 661 LLGE 664 (665)
T ss_pred HHhc
Confidence 8764
No 212
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=46.31 E-value=88 Score=23.95 Aligned_cols=42 Identities=17% Similarity=0.010 Sum_probs=29.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
|.++.++.|--|-.+.+....+...+.|+.+||.+..+.++.
T Consensus 27 ~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 68 (189)
T TIGR02432 27 KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDV 68 (189)
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 555555555445455566677888999999999999888753
No 213
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=46.12 E-value=89 Score=26.88 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=37.6
Q ss_pred ECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 47 VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 47 vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
|.+......|.+...+..++.|+.+..+.|+.+.+.+.+.+.++.+.+. ++|.|+
T Consensus 28 v~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~II 82 (349)
T cd08550 28 VGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQ-EADVII 82 (349)
T ss_pred EEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEE
Confidence 3443344467777788888889877776677776777777777776553 567766
No 214
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=45.90 E-value=73 Score=21.78 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=29.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHc---CceeeeecCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEV---GIKSFDIDLPE 78 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~---Gi~~~~~~l~~ 78 (167)
.|-.+-.|..|.|..-+++..+.|++. ..+.+++++.+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~ 43 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK 43 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc
Confidence 567777888899999999999999997 44445555443
No 215
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=45.85 E-value=1.5e+02 Score=25.72 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=55.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcch-HHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDS-QSYVSMKRKACAEVGIKSFDID-LPEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as-~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~ 86 (167)
.+++-|+...+++-+. +..+ |.+. ++.|.+.... ..+.....+..++.|+++..+. ..++-+.+.+.
T Consensus 7 ~~i~~G~g~l~~l~~~----l~~~----g~~~---~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~ 75 (377)
T cd08176 7 PTNLFGAGAIKEIGDE----LKNL----GFKK---ALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVK 75 (377)
T ss_pred CeEEECcCHHHHHHHH----HHHh----CCCe---EEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHH
Confidence 3466676655544433 3333 4332 2233332222 2567777888888999988773 56677888888
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHh
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLG 118 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~ 118 (167)
+.++.+.+. +.|.|+---= -+-+|.-+...
T Consensus 76 ~~~~~~~~~-~~D~IIavGG-GS~iD~aK~ia 105 (377)
T cd08176 76 DGLAVFKKE-GCDFIISIGG-GSPHDCAKAIG 105 (377)
T ss_pred HHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHH
Confidence 887777654 5788874211 12255555443
No 216
>PRK05473 hypothetical protein; Provisional
Probab=45.78 E-value=22 Score=25.32 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=25.8
Q ss_pred ccCCcccH--HHhhccCCCCCCCCc--hHHHHHHHhhh
Q 031035 127 DGFHPLNI--GKLAMKGRDPLFLPC--TPKAIILYSCL 160 (167)
Q Consensus 127 DGl~~~Nl--G~l~~g~~~~~~~Pc--Tp~avi~lL~~ 160 (167)
-|.+|.|+ |-|++| +|.++|- -|+..+.-+|+
T Consensus 34 KGYNPinQiVGYllSG--DPaYItsh~nAR~lIrkiER 69 (86)
T PRK05473 34 KGYNPINQIVGYLLSG--DPAYIPRHNDARNLIRKLER 69 (86)
T ss_pred cCCChHHHHHhhhccC--CCCccCCcccHHHHHHHHhH
Confidence 48999997 999999 6999985 78888765553
No 217
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=45.65 E-value=1e+02 Score=23.77 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=62.3
Q ss_pred HHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC----CCCHHHHH-----HHHHHhcCCCCCcEE
Q 031035 31 LLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE----QVSEAELI-----SKVHELNVMPDVHGI 101 (167)
Q Consensus 31 ~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~----~~~~~el~-----~~I~~lN~D~~V~GI 101 (167)
.+....+.....+.|--|-++.|....+...+.|++.||.+....++. ..+.++.. ..+.++-.....+-|
T Consensus 21 ~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i 100 (182)
T PF01171_consen 21 ELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKI 100 (182)
T ss_dssp HHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEE
T ss_pred HHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccce
Confidence 343333554555555555667888889999999999999999999874 22222222 244455556666666
Q ss_pred EEeCCCCCCCC---HHHHHhcCCC--CCCcccCCccc-HHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 102 LVQLPLPKHIN---EEKVLGEISL--EKDVDGFHPLN-IGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 102 lvq~PLP~~id---~~~i~~~I~P--~KDVDGl~~~N-lG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++= -|.| +.-+++.+.= ..-.-|+.+.+ .+.+.. -..|+-++-.-+.+.++..++
T Consensus 101 ~~G----Hh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~---iRPLl~~~k~ei~~~~~~~~i 161 (182)
T PF01171_consen 101 ALG----HHLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKL---IRPLLYVSKDEIRAYAKENGI 161 (182)
T ss_dssp E-------BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEE---E-GGGCS-HHHHHHHHHHTT-
T ss_pred eec----CcCCccHHHHHHHHHHhccchhhccccccccccCccc---CCcchhCCHHHHHHHHHHCCC
Confidence 553 3333 2334443321 12233444332 111111 123566777777777766654
No 218
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.40 E-value=1e+02 Score=27.21 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC
Q 031035 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL 76 (167)
Q Consensus 18 a~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l 76 (167)
+...|+.-.++++.|.++.|.. ...- .-|.||||.+|= -...|+.-|+++..+.-
T Consensus 175 ~DTFRAaAiEQL~~w~er~gv~-vI~~-~~G~DpAaVafD--Ai~~Akar~~DvvliDT 229 (340)
T COG0552 175 GDTFRAAAIEQLEVWGERLGVP-VISG-KEGADPAAVAFD--AIQAAKARGIDVVLIDT 229 (340)
T ss_pred cchHHHHHHHHHHHHHHHhCCe-EEcc-CCCCCcHHHHHH--HHHHHHHcCCCEEEEeC
Confidence 4456777778888887765542 2221 269999999995 67788888888887764
No 219
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.28 E-value=1.9e+02 Score=25.14 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=58.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELIS 87 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~ 87 (167)
.++.-|+...+++-+. +..+ |.+..| |..|..-....|.+...+..++.|+++..+. ..++-+.+.+.+
T Consensus 8 ~~i~fG~g~l~~l~~~----l~~~----g~~r~l--vvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~ 77 (379)
T TIGR02638 8 ETSYFGAGAIEDIVDE----VKRR----GFKKAL--VVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKA 77 (379)
T ss_pred CeEEECcCHHHHHHHH----HHhc----CCCEEE--EEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHH
Confidence 4566676655544433 3333 543222 2223332233377788888999999988773 556667788887
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
.++.+.+. ++|.|+-.-= -+-+|.-+.+..+
T Consensus 78 ~~~~~~~~-~~D~IiaiGG-GSviD~aKaia~~ 108 (379)
T TIGR02638 78 GVAAFKAS-GADYLIAIGG-GSPIDTAKAIGII 108 (379)
T ss_pred HHHHHHhc-CCCEEEEeCC-hHHHHHHHHHHHH
Confidence 77777654 5788885211 1236666655443
No 220
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=45.16 E-value=27 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
-++-+++.+.|+++++|++|.+|++..=
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~ 47 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLRVN 47 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEEc
Confidence 3467899999999999999999999733
No 221
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=45.03 E-value=1.3e+02 Score=24.01 Aligned_cols=58 Identities=5% Similarity=-0.037 Sum_probs=38.3
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcC-ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++|++-+-+|--...+....+.+++.| .........+ ++..+.++.+ ...|+|+++.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~--~~~vdGvIi~~ 60 (247)
T cd06276 2 ILLLLNKLSSFKEIIYNSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT--KGKYSGYVVMP 60 (247)
T ss_pred EEEEEecCchHHHHHHHHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH--hcCCCEEEEec
Confidence 566666667766677889999999999 6555543322 3333444443 36799999963
No 222
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=44.73 E-value=1.8e+02 Score=24.01 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..++++|. .+++....+.+...+.+++.|+++.. ..++. ++.++...+.++.+ .+.+.|++...
T Consensus 141 ~~~v~~v~-~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~v~~l~~-~~~d~i~~~~~ 205 (345)
T cd06338 141 PKKVAILY-ADDPFSQDVAEGAREKAEAAGLEVVYDETYPP--GTADLSPLISKAKA-AGPDAVVVAGH 205 (345)
T ss_pred CceEEEEe-cCCcccHHHHHHHHHHHHHcCCEEEEEeccCC--CccchHHHHHHHHh-cCCCEEEECCc
Confidence 45777775 46777788888999999999999864 34443 33467777777754 34677777554
No 223
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=43.83 E-value=78 Score=22.60 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=40.1
Q ss_pred EEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCC--HHHHHHHHHHhcCC
Q 031035 42 LAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--EAELISKVHELNVM 95 (167)
Q Consensus 42 Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--~~el~~~I~~lN~D 95 (167)
+.++=.| .+++-..|+..-++..++-|++++.-.+.-.+. -+++.+.|++..+-
T Consensus 5 isv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~ 61 (97)
T TIGR00106 5 VSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIHEA 61 (97)
T ss_pred EEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHHHH
Confidence 4556667 555667799999999999999998887754432 57888888877543
No 224
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=43.41 E-value=56 Score=25.18 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCc----------chHHHHHHHHHHHHHcCceee-eecCCC---CCCHHHHHHHH
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRK----------DSQSYVSMKRKACAEVGIKSF-DIDLPE---QVSEAELISKV 89 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~----------as~~Y~~~k~k~~~~~Gi~~~-~~~l~~---~~~~~el~~~I 89 (167)
.|-+++.++.++.+. ..+++...+.| ....-.+.|.+..+++||++. .+.|.+ ..+.+++++.+
T Consensus 23 ~Li~~~~~~a~~~~~--~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls~~~Fi~~i 100 (157)
T PF06574_consen 23 KLIKKAVEIAKEKGL--KSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTEEFANLSPEDFIEKI 100 (157)
T ss_dssp HHHHHHHHHHHHCT---EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCCHHCCS-HHHHHHHH
T ss_pred HHHHHHhhhhhhccc--ceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchHHHHcCCHHHHHHHH
Confidence 333344444434343 45556666554 334456789999999999974 566764 45667776652
Q ss_pred HHhcCCCCCcEEEEe
Q 031035 90 HELNVMPDVHGILVQ 104 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq 104 (167)
|.+.-++.+|+|=
T Consensus 101 --L~~~l~~~~ivvG 113 (157)
T PF06574_consen 101 --LKEKLNVKHIVVG 113 (157)
T ss_dssp --CCCHCTEEEEEEE
T ss_pred --HHhcCCccEEEEc
Confidence 2333456677663
No 225
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=43.34 E-value=1.3e+02 Score=26.60 Aligned_cols=106 Identities=8% Similarity=0.070 Sum_probs=62.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCC-cchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~ 86 (167)
++++-|+...+++-+.++ ++ |.+ .++.+++. -...-+++......++.|+++..+ ....+-+.+.+.
T Consensus 28 ~~i~fG~g~~~~l~~~~~----~~----g~~---~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~ 96 (395)
T PRK15454 28 PVTLCGPGAVSSCGQQAQ----TR----GLK---HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVC 96 (395)
T ss_pred CeEEECcCHHHHHHHHHH----hc----CCC---EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHH
Confidence 456778777665554443 22 433 22234432 223345666888889999998877 456677778788
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC--CCCCCcc
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI--SLEKDVD 127 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I--~P~KDVD 127 (167)
+.++..++. +.|+|+=.-= -+-+|.-+..... +|..|++
T Consensus 97 ~~~~~~r~~-~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~ 137 (395)
T PRK15454 97 AAVAQLRES-GCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLA 137 (395)
T ss_pred HHHHHHHhc-CcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHH
Confidence 877777664 6788876321 1246766654443 3444444
No 226
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=43.15 E-value=1e+02 Score=26.46 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
...|.+...+..++.|+++....+..+.+.+.+.+.++.+.+ .+.|.|+-
T Consensus 34 ~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa 83 (351)
T cd08170 34 LDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD-NGADVVIG 83 (351)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh-cCCCEEEE
Confidence 337888888889999999876667778888888777777665 35566653
No 227
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=42.92 E-value=37 Score=32.53 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=43.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhc--cCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEK--YGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~--~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
.++.|+ +...=|+++++.++.+-.+ ..+.-+.-.+.+|++++| |.+.|+++||. -++|+++++
T Consensus 599 fV~TG~-l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGs------Kl~KA~~LGI~--------Ii~e~~f~~ 663 (669)
T PRK14350 599 FCITGS-FNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGL------KLKKANNLGIK--------IMSLFDIKS 663 (669)
T ss_pred EEEecc-cCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCc------hHHHHHHcCCE--------EecHHHHHH
Confidence 345554 2322366777777665211 145677888889988874 78899999995 247788888
Q ss_pred HHH
Q 031035 88 KVH 90 (167)
Q Consensus 88 ~I~ 90 (167)
.|.
T Consensus 664 ~l~ 666 (669)
T PRK14350 664 YVD 666 (669)
T ss_pred Hhc
Confidence 654
No 228
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=42.64 E-value=1.3e+02 Score=26.17 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
+.+...+..++.|+++..+....+.+.+.+.+.++...+. +.|.|+-.-= -+-+|.-+....
T Consensus 35 ~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIaiGG-GS~~D~aK~ia~ 96 (374)
T cd08183 35 RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNA-GCDVVIAIGG-GSVIDAGKAIAA 96 (374)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhc-CCCEEEEecC-chHHHHHHHHHH
Confidence 7777788889999999888777777877777777766554 6777765211 123565555443
No 229
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=42.57 E-value=1.3e+02 Score=23.01 Aligned_cols=36 Identities=6% Similarity=-0.003 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCC
Q 031035 83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEIS 121 (167)
Q Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~ 121 (167)
+++.+..+++.+- |||++-.|.-.+-=.-.+.+.||
T Consensus 57 ~~~~~~~~~i~~A---D~iIi~tP~Y~~s~~~~LKn~lD 92 (174)
T TIGR03566 57 PDAERILQAIESA---DLLVVGSPVYRGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHHC---CEEEEECCcCcCcCcHHHHHHHH
Confidence 4455555555544 69999999986654555555554
No 230
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=42.52 E-value=1.5e+02 Score=25.84 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=43.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|...++ -...-.+.-.+.+++.|+.... ..++...+..++...|.++.+....+.|++...
T Consensus 174 ~vaii~~~~~-~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~ 239 (452)
T cd06362 174 YVSTVASEGN-YGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCR 239 (452)
T ss_pred EEEEEEeCCH-HHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcC
Confidence 5666655544 3355567778899999987663 335555567888888888876555677766543
No 231
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=42.37 E-value=36 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.+-.++.+.|+++.+|++|.||++...-|.
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g 54 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPG 54 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCC
Confidence 456899999999999999999999765553
No 232
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.19 E-value=1.3e+02 Score=24.87 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred EEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 42 LAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 42 Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++|.-.- +|-...-++...+.|++.|...-+..-..+. +.- +.|+.|-+. +|+|||+.-+
T Consensus 4 IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~--~~e-~~i~~l~~~-~vDGiI~~s~ 65 (279)
T PF00532_consen 4 IGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDE--EKE-EYIELLLQR-RVDGIILASS 65 (279)
T ss_dssp EEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTH--HHH-HHHHHHHHT-TSSEEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCch--HHH-HHHHHHHhc-CCCEEEEecc
Confidence 44443332 4555556678999999999988877654432 222 777766444 6999999844
No 233
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=42.16 E-value=1.3e+02 Score=26.85 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=45.3
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCCCCH--HHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSE--AELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~--~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|.. +|.-...-.+...+.+++.||.+...+ ++...+. .++...++++. +.+.+.|++...
T Consensus 174 ~Vaiv~~-d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~-~~~arvIvl~~~ 240 (469)
T cd06365 174 WVGLVIS-DDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIM-TSSAKVIIIYGD 240 (469)
T ss_pred EEEEEEe-cChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhh-cCCCeEEEEEcC
Confidence 4555555 455556678888999999999887644 5555432 47788888884 577888888765
No 234
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=41.90 E-value=1.4e+02 Score=22.07 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCceEEEEEECCCcc-----hHHHHHHHHHHHHHc-----CceeeeecCCCCC-----------CHHHHHHHHHHhcCCC
Q 031035 38 KVPGLAVVIVGGRKD-----SQSYVSMKRKACAEV-----GIKSFDIDLPEQV-----------SEAELISKVHELNVMP 96 (167)
Q Consensus 38 ~~P~Laii~vg~d~a-----s~~Y~~~k~k~~~~~-----Gi~~~~~~l~~~~-----------~~~el~~~I~~lN~D~ 96 (167)
.+|.+++|.+|-|.. ...|.+...+..+.+ +..+.....|... .-+++-+.++++.+..
T Consensus 50 ~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~ 129 (174)
T cd01841 50 KNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPEL 129 (174)
T ss_pred cCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHC
Confidence 479999999998763 224444444444332 4555544443321 2355667777776666
Q ss_pred CCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 97 DVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 97 ~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
+++=|=+.-++.... .. ....=-.||+||.-.|.-..
T Consensus 130 ~~~~id~~~~~~~~~--~~----~~~~~~~DglH~n~~Gy~~~ 166 (174)
T cd01841 130 GVTFIDLNDVLVDEF--GN----LKKEYTTDGLHFNPKGYQKL 166 (174)
T ss_pred CCEEEEcHHHHcCCC--CC----ccccccCCCcccCHHHHHHH
Confidence 544433333322111 00 11122359999988886544
No 235
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=41.81 E-value=63 Score=31.02 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
+.+.+|.+.++.++++++. |+++ ++.-||++... .+.|+++||+-.. ...++++=.+.++++.+.-
T Consensus 443 l~D~~Rp~a~eaI~~l~~~-Gi~v---~miTGD~~~ta------~~iA~~lGI~~v~----a~~~PedK~~~v~~lq~~g 508 (675)
T TIGR01497 443 LKDIVKGGIKERFAQLRKM-GIKT---IMITGDNRLTA------AAIAAEAGVDDFI----AEATPEDKIALIRQEQAEG 508 (675)
T ss_pred ecccchhHHHHHHHHHHHC-CCEE---EEEcCCCHHHH------HHHHHHcCCCEEE----cCCCHHHHHHHHHHHHHcC
Confidence 4567889999999999876 7764 45668877654 4568999996322 3455566666777775543
No 236
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=41.68 E-value=79 Score=23.72 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=50.2
Q ss_pred HHHHHHcCceeeeecCCCCC---CHHHHHHHHHH--------hc-CCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCccc
Q 031035 61 RKACAEVGIKSFDIDLPEQV---SEAELISKVHE--------LN-VMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~--------lN-~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDG 128 (167)
.+.-++.||+|+.++.++.. +-+|+.+.+.- += .+++-.=+++..|-..++|..++.+.+.. +.+.-
T Consensus 5 ~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~-~~l~~ 83 (152)
T cd00002 5 IRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGA-KKVEM 83 (152)
T ss_pred HHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCC-CCccc
Confidence 45678999999999987643 33444333221 00 11111237888888889999999998855 33444
Q ss_pred CCcccHHHhhccCCCCCCCCc
Q 031035 129 FHPLNIGKLAMKGRDPLFLPC 149 (167)
Q Consensus 129 l~~~NlG~l~~g~~~~~~~Pc 149 (167)
.++.-+-+++ |. ..+++|.
T Consensus 84 a~~ee~~~~~-g~-~~G~v~P 102 (152)
T cd00002 84 APPKDAERLT-GY-IRGGISP 102 (152)
T ss_pred CCHHHHHHhc-CC-cccccCc
Confidence 4544444432 32 3455443
No 237
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.45 E-value=1.4e+02 Score=25.27 Aligned_cols=65 Identities=18% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~K 124 (167)
...+.|+++|+++..-.-.-...++.+.+..+++--++.--=|=||-=.| -++..-|.+.+.+.+
T Consensus 54 ~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP-~i~p~~I~~~~~~L~ 118 (247)
T COG1212 54 RIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEP-FIEPEVIRAVAENLE 118 (247)
T ss_pred HHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCC-CCCHHHHHHHHHHHH
Confidence 47789999999998887766677899999999985543323344555444 344444444443333
No 238
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=41.41 E-value=52 Score=30.08 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=52.1
Q ss_pred HHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC-----------------CCCHHHHHhcCCCCCCcc
Q 031035 65 AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK-----------------HINEEKVLGEISLEKDVD 127 (167)
Q Consensus 65 ~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~-----------------~id~~~i~~~I~P~KDVD 127 (167)
++....++++..|=-+|.+++-+..++.|.|+.+-|+|+.+=-.+ |+..+ --..| |-+.+|
T Consensus 40 ~~~~~P~kiv~k~l~tS~d~i~~~~~~an~~d~cag~ItwmHtfSpakmwi~g~~~~~kPllhlhtQ-~n~~I-pw~tiD 117 (497)
T COG2160 40 EEAKLPYKIVLKPLITSPDEITAICREANYDDRCAGVITWLHTFSPAKMWINGLRILNKPLLHLHTQ-FNAAI-PWDSID 117 (497)
T ss_pred hhcCCCeEEEeccccCCHHHHHHHHHHhccCccceeEEEEEEecChHHHhhcccccccCceEEeecc-ccccC-Cccccc
Confidence 344455666666777788999999999999999999998652211 22211 12344 667776
Q ss_pred cCCcccHHHhhccCCCCCC
Q 031035 128 GFHPLNIGKLAMKGRDPLF 146 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~~~ 146 (167)
...-|+-....|+.+-+|
T Consensus 118 -md~MnlnqsAHGdrE~gf 135 (497)
T COG2160 118 -MDFMNLNQSAHGDREYGF 135 (497)
T ss_pred -chhhcccccccCcchheh
Confidence 667777777777644444
No 239
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=41.34 E-value=1e+02 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
++-...+.+...+.|++.|+.+....... +.. . ...+|+|||+.-+.
T Consensus 16 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----~~~----~--~~~~vdgii~~~~~ 62 (270)
T cd01544 16 DPYYLSIRLGIEKRAQELGIELTKFFRDD-----DLL----E--ILEDVDGIIAIGKF 62 (270)
T ss_pred CccHHHHHHHHHHHHHHcCCEEEEEeccc-----hhH----H--hccCcCEEEEecCC
Confidence 56667777888999999999988765421 111 1 24679999997543
No 240
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=41.31 E-value=1.6e+02 Score=22.63 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEECCCc-----chHHHHHHHHHHHHHc---Cceeeeec--CCCCCCH---HH
Q 031035 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK-----DSQSYVSMKRKACAEV---GIKSFDID--LPEQVSE---AE 84 (167)
Q Consensus 18 a~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~-----as~~Y~~~k~k~~~~~---Gi~~~~~~--l~~~~~~---~e 84 (167)
+....+++.+.+... +|.+++|.+|-|. +...|.....+.-+.+ |....... +|..... +.
T Consensus 56 t~~~~~rl~~~l~~~------~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~ 129 (191)
T PRK10528 56 SQQGLARLPALLKQH------QPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEA 129 (191)
T ss_pred HHHHHHHHHHHHHhc------CCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHH
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCC-CcccCCcccHH
Q 031035 85 LISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK-DVDGFHPLNIG 135 (167)
Q Consensus 85 l~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~K-DVDGl~~~NlG 135 (167)
+-+.++++.+..+++ .+|...-.....|+- -.||+||.-.|
T Consensus 130 ~~~~~~~~a~~~~v~----------~id~~~~~~~~~~~~~~~DGiHpn~~G 171 (191)
T PRK10528 130 FSAIYPKLAKEFDIP----------LLPFFMEEVYLKPQWMQDDGIHPNRDA 171 (191)
T ss_pred HHHHHHHHHHHhCCC----------ccHHHHHhhccCHhhcCCCCCCCCHHH
No 241
>KOG3474 consensus Molybdopterin converting factor, small subunit [Energy production and conversion]
Probab=41.01 E-value=29 Score=24.07 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred HHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 62 KACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 62 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
++|+-.|..-+.+++|+.++.++.++.|-
T Consensus 11 ~A~eLtG~~d~ai~~Pe~s~~ee~~deil 39 (84)
T KOG3474|consen 11 EACELTGKPDEAIDFPEESDTEECLDEIL 39 (84)
T ss_pred hhHHhcCCchhhccCCCCCCHHHHHHHHH
Confidence 68999999999999999999988887653
No 242
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=41.00 E-value=2.8e+02 Score=25.28 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 14 GKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 14 Gk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
....++..-+.+++.+..+ +...++. |.++... +...|.+......++.|++++++.-... .+..+..
T Consensus 90 ~~~~~~~w~~~~~~~~~~~----~~~kr~l-vIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~---ghA~~la 161 (481)
T PLN02958 90 SDESRRLWCQKLRDYLDSL----GRPKRLL-VFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ---LHAKEVV 161 (481)
T ss_pred CHHHHHHHHHHHHHHHhhc----cCCcEEE-EEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc---cHHHHHH
Confidence 4556666667777655433 4434444 4455433 4566766677789999999887754322 3333444
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD 125 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KD 125 (167)
+++.. ...++|++--= ++. .+++++.+-...|
T Consensus 162 ~~~~~-~~~D~VV~vGG--DGT-lnEVvNGL~~~~~ 193 (481)
T PLN02958 162 RTMDL-SKYDGIVCVSG--DGI-LVEVVNGLLERED 193 (481)
T ss_pred HHhhh-cCCCEEEEEcC--CCH-HHHHHHHHhhCcc
Confidence 44432 34678887421 222 4667777754444
No 243
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=40.99 E-value=1.6e+02 Score=23.86 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-..-.+...+.|++.|+.+....... +.++..+.++.+... .++||++.
T Consensus 41 ~~~~~~~i~~~~~~~G~~~~~~~~~~--d~~~~~~~~~~l~~~-~~dgiii~ 89 (295)
T PRK10653 41 FVSLKDGAQKEADKLGYNLVVLDSQN--NPAKELANVQDLTVR-GTKILLIN 89 (295)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCC--CHHHHHHHHHHHHHc-CCCEEEEc
Confidence 33334567799999999988764432 345555666666433 68999984
No 244
>PLN02727 NAD kinase
Probab=40.98 E-value=1.2e+02 Score=30.39 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHHHHHHHhc
Q 031035 29 VRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELISKVHELN 93 (167)
Q Consensus 29 v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~~~I~~lN 93 (167)
++.+.++ |++ -.|=+-++++....|......+|++.|+++..+.+ ....+++.+.+..+.++
T Consensus 274 la~LA~~-GfK--TIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~ 337 (986)
T PLN02727 274 LKWLLEK-GFK--TIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVS 337 (986)
T ss_pred HHHHHHC-CCe--EEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHH
Confidence 3444444 764 33333345555788888899999999999999977 34557888888888883
No 245
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=40.46 E-value=81 Score=22.95 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=41.4
Q ss_pred eEEEEEECCCcch-HHHHHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHhcCC
Q 031035 41 GLAVVIVGGRKDS-QSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVM 95 (167)
Q Consensus 41 ~Laii~vg~d~as-~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 95 (167)
-+.++=+|.+..| ..|+...++..++.|+.+++-..--. -+-+|+++.|+++.+-
T Consensus 6 ~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 6 ELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHH
Confidence 4667778855555 89999999999999999887654221 1468899999887653
No 246
>COG0218 Predicted GTPase [General function prediction only]
Probab=40.43 E-value=2e+02 Score=23.45 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC-CCCCCHHH---HHHHHH-Hhc
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAE---LISKVH-ELN 93 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~e---l~~~I~-~lN 93 (167)
++.++..+..+.++-+.+ ..-+.+++++.-+..-...-+.-.....+.|+.+.+.-- -+.++..+ .+..+. .++
T Consensus 87 k~~~e~w~~~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 345555566666554432 236788888888777777667888899999999876532 12233322 344454 788
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 94 VMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 94 ~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
.++..+=.++..|..++...+++.+.|
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i 192 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKI 192 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHH
Confidence 888777657777888877777776665
No 247
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=40.42 E-value=1.4e+02 Score=25.59 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHcCceeeeecCCCC---CCHHHHHHHHHHhcCCCCCcEEE
Q 031035 52 DSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 52 as~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIl 102 (167)
....|.....+..++.|+++..+.+++. -+.+.+.+.++.+.+ +.|.|+
T Consensus 34 ~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~II 85 (348)
T cd08175 34 TYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLII 85 (348)
T ss_pred HHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEEE
Confidence 3444566667788899998877765433 677888888888765 667776
No 248
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=40.06 E-value=48 Score=32.75 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
+.+.+|++.++-|+++++. |+++ ++.-||++.... ..|+++||.
T Consensus 547 ~~Dp~R~~a~~aI~~l~~a-GI~v---~miTGD~~~tA~------~IA~~lGI~ 590 (902)
T PRK10517 547 FLDPPKETTAPALKALKAS-GVTV---KILTGDSELVAA------KVCHEVGLD 590 (902)
T ss_pred hhCcchhhHHHHHHHHHHC-CCEE---EEEcCCCHHHHH------HHHHHcCCC
Confidence 5677899999999999876 8774 455699886654 469999995
No 249
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=40.05 E-value=2e+02 Score=23.24 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEE---------CCCcchHHHHHHHHHHHHHcCceeeeecCC--CC-------CC
Q 031035 20 TIRSEIAEEVRLLSEKYGKVPGLAVVIV---------GGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQ-------VS 81 (167)
Q Consensus 20 ~i~~~lk~~v~~l~~~~g~~P~Laii~v---------g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~-------~~ 81 (167)
...+..++.+..++++ |.+.-+++--. .+..+-..|+++....+++.|++-..+.+. .. .+
T Consensus 48 ~~~~~~~~~i~~l~~k-G~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~ 126 (255)
T cd06542 48 FLLTNKETYIRPLQAK-GTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPS 126 (255)
T ss_pred hhhHHHHHHHHHHhhC-CCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcch
Confidence 3456667778888666 76544443211 111235789999999999999777666542 11 23
Q ss_pred HHHHHHHHHHhcCC
Q 031035 82 EAELISKVHELNVM 95 (167)
Q Consensus 82 ~~el~~~I~~lN~D 95 (167)
.+.+...+++|.+.
T Consensus 127 ~~~~~~lv~~Lr~~ 140 (255)
T cd06542 127 NEAFVRLIKELRKY 140 (255)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666677766654
No 250
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=39.88 E-value=1.9e+02 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=38.9
Q ss_pred ECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 47 VGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 47 vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|..-....+.+...+..++.|+++..+ .+.++.+.+.+.+.++...+. ++|.|+=
T Consensus 31 ~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~d~IIa 87 (370)
T cd08192 31 TDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAG-GCDGVIA 87 (370)
T ss_pred cCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc-CCCEEEE
Confidence 3433333336777888889999998776 366777888888877776544 6788774
No 251
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=39.86 E-value=57 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
|-.+.......+...|+.+..+.---+...=.+.+.++.+.+||++..|++++=
T Consensus 10 SG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E 63 (138)
T PF13607_consen 10 SGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLE 63 (138)
T ss_dssp -HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEcc
Confidence 445555677888887777665543222222245667777788999999999864
No 252
>PHA03289 envelope glycoprotein I; Provisional
Probab=39.78 E-value=39 Score=29.72 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=35.9
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
|..|+.+....-. .....-|++|-+.+....|.++++.|+++.+++
T Consensus 299 iy~g~~~s~~~~~-~~~~~~~~f~~~~~~~~~ps~i~~~e~~e~~~k 344 (352)
T PHA03289 299 IYIGNEPSDLTSL-INSAVNEKFGCNPETKNVPSDISEAELLERLEK 344 (352)
T ss_pred eecCCCCcccchh-hhhhhhhhhcCCcccccCcccccHHHHHHHHHH
Confidence 5568877655443 233456889999999999999999999998887
No 253
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=39.77 E-value=50 Score=25.38 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
.+|.++..++.+++|++++++.+.. +.++..+ ...+.+||++. |=|....
T Consensus 7 ~~~~~~l~~~l~~~~~~~~v~~~~~--~~~~~~~------~~~~~d~iii~-Gg~~~~~ 56 (192)
T PF00117_consen 7 DSFTHSLVRALRELGIDVEVVRVDS--DFEEPLE------DLDDYDGIIIS-GGPGSPY 56 (192)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEETTG--GHHHHHH------HTTTSSEEEEE-CESSSTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCC--chhhhhh------hhcCCCEEEEC-CcCCccc
Confidence 3578899999999999999998764 2233322 25568999996 4454444
No 254
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=39.69 E-value=1.2e+02 Score=26.76 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
.++|.-+++.+.++. ..-.+...+.++..|+.++.+.+++..+-+++.+.++++
T Consensus 24 ~~~p~kvvlI~t~~~--~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~~i~~~l~~l 77 (381)
T PF09002_consen 24 KFKPDKVVLIGTEDM--KEKAERLKSVLKQRGIKVEFFEIPDEYDIEEIKESLEQL 77 (381)
T ss_dssp T----EEEEEE-GGG--HHHHHHHHHHHHHTT-EEEEEE--SSS-HHHHHHHHHHH
T ss_pred cCCCCEEEEEECchH--HHHHHHHHHHHHhcCCCceEEecCChhhHHHHHHHHHHH
Confidence 578886665555444 444456778999999999999988766766665555554
No 255
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.56 E-value=1.1e+02 Score=24.26 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=35.8
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHH-cCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAE-VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++|....++-.....+...+.|++ -|..+... ..+ . .+.++.|.. .+|+|||+.
T Consensus 2 ig~i~~~~~~~~~~~~~gi~~~~~~~~g~~~~~~--~~~--~---~~~~~~l~~-~~vdGiI~~ 57 (265)
T cd01543 2 VALLVETSSSYGRGVLRGIARYAREHGPWSIYLE--PRG--L---QEPLRWLKD-WQGDGIIAR 57 (265)
T ss_pred eEEEecccchhhHHHHHHHHHHHHhcCCeEEEEe--ccc--c---hhhhhhccc-cccceEEEE
Confidence 3445545577777778888999999 67765543 221 1 445555543 469999996
No 256
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=39.40 E-value=1e+02 Score=23.56 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEE--------CCCcchHHHHHHHHHHHHHcCceeeee
Q 031035 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIV--------GGRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 18 a~~i~~~lk~~v~~l~~~~g~~P~Laii~v--------g~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
.+++++.+.+-++.+++. +..+-|..-.. .-++.-..|.+..++.|++.|+.+..+
T Consensus 89 ~~~~~~nl~~ii~~~~~~-~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 89 YTTYKEYLRRYIAEARAK-GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEec
Confidence 466788888888888764 55443332111 012245678888999999999877544
No 257
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=39.36 E-value=2.2e+02 Score=23.51 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCC-cchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
+..++.+..+-. ..|+++.|=.-.+ .+...|++...++.+++|+++..++.++
T Consensus 18 ~~~~~~~~~~~~---~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~ 71 (233)
T PRK05282 18 EHALPLIAELLA---GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA 71 (233)
T ss_pred HHHHHHHHHHHc---CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch
Confidence 444444554422 3467666654433 3567899999999999999988887663
No 258
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=39.33 E-value=1.2e+02 Score=24.95 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+.+...+.|++.|..+.... .+.+.+.-.+.|+.+-.. .|+||++.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~--~~~~~~~q~~~i~~l~~~-~vDgIIi~ 61 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQS--ANGNEAKQISQIENLIAR-GVDVLVII 61 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEe--CCCCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 334455555555555544332 122223333344433322 35566554
No 259
>PRK01215 competence damage-inducible protein A; Provisional
Probab=39.21 E-value=1.2e+02 Score=25.56 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=42.2
Q ss_pred CceEEEEEECCCc------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 39 VPGLAVVIVGGRK------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 39 ~P~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+|+.+||.+|+.- +++.+ ...+.+++.|+++..+..-. .+.+++.+.|+++.++ .|-|++--
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~--~l~~~L~~~G~~v~~~~~v~-Dd~~~I~~~l~~a~~~--~DlVIttG 70 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNAS--WIARRLTYLGYTVRRITVVM-DDIEEIVSAFREAIDR--ADVVVSTG 70 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHH--HHHHHHHHCCCeEEEEEEeC-CCHHHHHHHHHHHhcC--CCEEEEeC
Confidence 6889999999641 34443 46677899999987664322 2567888999888764 36666643
No 260
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=39.00 E-value=1.1e+02 Score=26.05 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=41.5
Q ss_pred eEEEEEECCCcc---hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKD---SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~a---s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|...++.. .....+...+..++.|+......+.....+.++...|.++++.. +.|++...
T Consensus 144 ~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~--~vii~~~~ 210 (396)
T cd06373 144 RAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDFPFDEDKELDDYKELLRDISKKG--RVVIMCAS 210 (396)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEEeecCCccccCHHHHHHHHHhcC--cEEEEecC
Confidence 577776655554 24456677788889999887766665421356667777776643 77776554
No 261
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=38.88 E-value=2.2e+02 Score=23.50 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.9
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++++|...+++-....++.-.+.+++.|+++... .++. ++.++...+.++.+. ..+.|++...
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~v~~i~~~-~~d~vi~~~~ 201 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQT--GDTDFQAQITAVLNS-KPDLIVISAL 201 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCC--CCCCHHHHHHHHHhc-CCCEEEECCc
Confidence 46777777767677888999999999999998653 3332 234566666666333 4667777654
No 262
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=38.85 E-value=2e+02 Score=23.72 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=43.0
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
..+++++. .+++....+.+...+.+++.|++........ .+..++-..+.++.+ .+.+.|++..
T Consensus 135 ~~~v~~i~-~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~d~~~~v~~l~~-~~~d~v~~~~ 198 (334)
T cd06327 135 GKKWFFLT-ADYAFGHSLERDARKVVKANGGKVVGSVRHP-LGTSDFSSYLLQAQA-SGADVLVLAN 198 (334)
T ss_pred CCeEEEEe-cchHHhHHHHHHHHHHHHhcCCEEcCcccCC-CCCccHHHHHHHHHh-CCCCEEEEec
Confidence 45778776 5677788888999999999999875433221 233456666666643 3467777754
No 263
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=38.73 E-value=82 Score=22.01 Aligned_cols=40 Identities=23% Similarity=0.076 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHhc
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHELN 93 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN 93 (167)
-.|-+..++..++.||+++.+.+.+ ..+.+++.+...+++
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 9 CSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 3455666777777888888777743 345667777766654
No 264
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=38.64 E-value=3e+02 Score=24.91 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCceee-----eecCCCCCCHHHHHHHH-HHhcCCCCCcEEEEeCCCCCCCCHHHHH
Q 031035 55 SYVSMKRKACAEVGIKSF-----DIDLPEQVSEAELISKV-HELNVMPDVHGILVQLPLPKHINEEKVL 117 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~-----~~~l~~~~~~~el~~~I-~~lN~D~~V~GIlvq~PLP~~id~~~i~ 117 (167)
.|++...+.|+++|+++. ..+.......+++++.| +.|+..+.|.+-+---.--.+||.+.+.
T Consensus 91 ~~a~~Ld~aa~~~gvdfigGfsalv~kG~~~~d~~lI~sipeaL~~t~~v~ssVnv~st~~GIn~dav~ 159 (400)
T cd08025 91 EIAKTLDKAAKEVGVDFIGGFSALVQKGFTRGDRALIESIPEALASTERVCSSVNVASTKAGINMDAVK 159 (400)
T ss_pred HHHHHHHHHHHHCCCceeehhhhhHhcCCCcccHHHHHHHHHHHHhcCceeeEEeecccccCCCHHHHH
Confidence 577999999999999983 22233334556766655 7788888888877654445566665543
No 265
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.38 E-value=32 Score=24.29 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.9
Q ss_pred cccCCcccH--HHhhccCCCCCCCCc--hHHHHHHHhh
Q 031035 126 VDGFHPLNI--GKLAMKGRDPLFLPC--TPKAIILYSC 159 (167)
Q Consensus 126 VDGl~~~Nl--G~l~~g~~~~~~~Pc--Tp~avi~lL~ 159 (167)
=-|.+|.|+ |-+.+| .|.++|- -|++-++=|+
T Consensus 33 ekGYNpiNQiVGYllSG--DPaYIpr~ndARn~IRk~e 68 (88)
T COG4472 33 EKGYNPINQIVGYLLSG--DPAYIPRYNDARNQIRKLE 68 (88)
T ss_pred HcCCChHHHHHhhhccC--CccccCccccHHHHHHHHh
Confidence 358999997 999999 6999994 6777665544
No 266
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=38.35 E-value=1.1e+02 Score=26.76 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
+|-++..++++....-+...++.++++||+++...++
T Consensus 322 ~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~ 358 (470)
T cd08490 322 ELTLLTYTSRPELPPIAEAIQAQLKKIGIDVEIRVVE 358 (470)
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHcCceEEEEEee
Confidence 5655544555777888889999999999999987664
No 267
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=38.27 E-value=49 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.+.+++.+.|+++.+|++|.||++..--|.
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G 42 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPG 42 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCC
Confidence 467899999999999999999999887553
No 268
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=38.23 E-value=2.3e+02 Score=23.38 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHhcCCCCCcEEEEe-CCCCCC--CCHHHHHhcCCCCCCcc
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVMPDVHGILVQ-LPLPKH--INEEKVLGEISLEKDVD 127 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvq-~PLP~~--id~~~i~~~I~P~KDVD 127 (167)
|..=.....+.|+++|++....--|.- .+++++.+..+++-+..+. .|+++ .|-..+ ++...+.+..+ .--|-
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~-pi~lYn~P~~~g~~ls~~~~~~L~~-~p~v~ 157 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDL-PVILYNVPGRTGVNIEPETVLRLAE-HPNIV 157 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCC-CEEEEEChhHhCCCCCHHHHHHHhc-CCCEE
Confidence 333334567889999999887775543 3689999999999887654 44554 554333 45444444332 22355
Q ss_pred cC
Q 031035 128 GF 129 (167)
Q Consensus 128 Gl 129 (167)
|+
T Consensus 158 gi 159 (284)
T cd00950 158 GI 159 (284)
T ss_pred EE
Confidence 55
No 269
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.14 E-value=2.1e+02 Score=23.01 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcC----ceeeeecCCCCCCHHHHHHHHHHh-cCCC-CCcEEEEeC
Q 031035 57 VSMKRKACAEVG----IKSFDIDLPEQVSEAELISKVHEL-NVMP-DVHGILVQL 105 (167)
Q Consensus 57 ~~~k~k~~~~~G----i~~~~~~l~~~~~~~el~~~I~~l-N~D~-~V~GIlvq~ 105 (167)
...-.+.+++.| ++........+.+.++-.+.++++ ...+ ..+||+..-
T Consensus 144 ~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~I~~~~ 198 (288)
T cd01538 144 FNGAMSVLKPLIDSGKITIVGEVATPDWDPETAQKRMENALTANYNKVDGVLAAN 198 (288)
T ss_pred HHHHHHHHHhccccCCeeEEeccccCCCCHHHHHHHHHHHHHhCCCCccEEEeCC
Confidence 344578888887 654332333333444444444443 4445 789999863
No 270
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=38.03 E-value=2.3e+02 Score=23.32 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHhccCCCceEEEEEECCCcchHHHHH--HHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 29 VRLLSEKYGKVPGLAVVIVGGRKDSQSYVS--MKRKACAEVGIKSFDIDL-PEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 29 v~~l~~~~g~~P~Laii~vg~d~as~~Y~~--~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
.+.|.+++..+| ++.+.... ..+....| .=.+++++.|+.+..... ..+.+.+.-.+.+++| ...|++++|+..
T Consensus 110 ~~~Li~~Gh~~~-I~~i~~~~-~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~ 187 (279)
T PF00532_consen 110 TEYLIKKGHRRP-IAFIGGPE-DSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCA 187 (279)
T ss_dssp HHHHHHTTCCST-EEEEEEST-TTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEES
T ss_pred HHHHHhcccCCe-EEEEecCc-chHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEe
Confidence 445555533344 44444332 22222222 357899999994433222 3344555544554444 556899999974
No 271
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=37.92 E-value=1.4e+02 Score=20.89 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 52 DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 52 as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..--|=+..++..++.|+.++.+.+.++....++.+.+.++....+|==|.+
T Consensus 16 ~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 3455666777899999999999999877666778888888776666544443
No 272
>TIGR03369 cellulose_bcsE cellulose biosynthesis protein BcsE. This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm. Members are found in the vicinity of other cellulose biosynthesis genes. The model does not include a much less well-conserved N-terminal region about 150 amino acids in length for most members. Solano, et al. suggest this protein acts as a protease.
Probab=37.90 E-value=2.3e+02 Score=24.84 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+.+..++-.|+++.|..-|++|.- ...+..| +=.+..=.+|++.. +|-++....++..|+. +.|=+
T Consensus 125 e~La~qih~LRr~~G~aLKIvVRE---~~~~LR~--~dE~LLL~~GaNlI---vp~~~p~SR~lt~ie~------lQGQ~ 190 (322)
T TIGR03369 125 EQLAAQVHALRRQCGSALKIVVRE---MKECLRQ--QDERLLLQLGANLV---VPRNTPFSRMLSLIES------LQGQV 190 (322)
T ss_pred HHHHHHHHHHHHhcCccceEEEEe---chhHHHH--HHHHHHHhcCCcEE---ecCCCCHHHHHHHHHH------Hhccc
Confidence 567777888887778877776643 3345665 35566778899854 4667888999999998 58999
Q ss_pred EeCCCCCCCCHHHHHhcCCCCCC
Q 031035 103 VQLPLPKHINEEKVLGEISLEKD 125 (167)
Q Consensus 103 vq~PLP~~id~~~i~~~I~P~KD 125 (167)
..+|+|..+ +.++++.-|.+.
T Consensus 191 fsR~vP~d~--~~lL~~~~~~~~ 211 (322)
T TIGR03369 191 FSRPIPADY--ESLLSAVLPTAA 211 (322)
T ss_pred ccCCCCcCH--HHHHHhccCccc
Confidence 999999776 568888888664
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.90 E-value=3.2e+02 Score=25.02 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=10.5
Q ss_pred CCCCCchHHHHHHHh
Q 031035 144 PLFLPCTPKAIILYS 158 (167)
Q Consensus 144 ~~~~PcTp~avi~lL 158 (167)
..+.++|+.-+.+++
T Consensus 418 eDI~~A~~~~L~~~l 432 (436)
T PRK11889 418 KNIHIATAEHLAKQM 432 (436)
T ss_pred cchhhCCHHHHHHHH
Confidence 357788888777664
No 274
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=37.76 E-value=2.4e+02 Score=23.45 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC--CCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVMPDVHGILVQLPLPK--HIN 112 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvq~PLP~--~id 112 (167)
|..|.+ +|-...|..-.-...+.|++.|++......|-- .+++++.+..+.+-+--++.=++=..|-.. .++
T Consensus 66 ~~~~vi----~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~ 141 (285)
T TIGR00674 66 GRVPVI----AGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLY 141 (285)
T ss_pred CCCeEE----EeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCC
Confidence 555644 333344555566778899999999888775533 357999999999876655543433344322 355
Q ss_pred HHHHHhcCCCCCCcccC
Q 031035 113 EEKVLGEISLEKDVDGF 129 (167)
Q Consensus 113 ~~~i~~~I~P~KDVDGl 129 (167)
..-+.+... ...|=|+
T Consensus 142 ~~~l~~L~~-~~~v~gi 157 (285)
T TIGR00674 142 PETVKRLAE-EPNIVAI 157 (285)
T ss_pred HHHHHHHHc-CCCEEEE
Confidence 444433332 2235554
No 275
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.69 E-value=51 Score=27.19 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
+..-+++..+.|+++|+.+... -+.+++-++.+.++.=| -+-|.++..|+|.
T Consensus 191 ~~~iv~~iv~la~~l~~~vvaE----GVEt~~ql~~L~~~G~~-~~QGylf~~P~~~ 242 (256)
T COG2200 191 DQAIVRAIVALAHKLGLTVVAE----GVETEEQLDLLRELGCD-YLQGYLFSRPLPA 242 (256)
T ss_pred hHHHHHHHHHHHHHCCCEEEEe----ecCCHHHHHHHHHcCCC-eEeeccccCCCCH
Confidence 3445568899999999986654 44557888999998877 6899999999996
No 276
>PRK11024 colicin uptake protein TolR; Provisional
Probab=37.36 E-value=1.2e+02 Score=22.65 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
+++.+.++.+... .|...++.-+|..+....+-.....|++.|+.-
T Consensus 88 ~~L~~~l~~~~~~---~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~ 133 (141)
T PRK11024 88 EQVVAEAKSRFKA---NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKS 133 (141)
T ss_pred HHHHHHHHHHHhh---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4455555554332 466667778888888888889999999999953
No 277
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=37.29 E-value=46 Score=32.81 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
+.+.+|++.++-|+++++. |+++ ++.-||++.... ..|+++||.
T Consensus 547 l~Dp~R~~a~~aI~~l~~a-GI~v---~miTGD~~~tA~------aIA~~lGI~ 590 (903)
T PRK15122 547 FLDPPKESAAPAIAALREN-GVAV---KVLTGDNPIVTA------KICREVGLE 590 (903)
T ss_pred ccCccHHHHHHHHHHHHHC-CCeE---EEECCCCHHHHH------HHHHHcCCC
Confidence 5667899999999999877 8764 455598876544 458999995
No 278
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=37.16 E-value=2.3e+02 Score=23.10 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=45.6
Q ss_pred CceEEEEEECC-------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC---CCcEEEEe
Q 031035 39 VPGLAVVIVGG-------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP---DVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~-------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~---~V~GIlvq 104 (167)
+.++|+|.-+. .+++..=++...+.++++|++++.+ .+.+.+++.+.++++.+.. +.+-.++.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~---~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVK---NNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEe---cCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 34566665553 3466777889999999999998766 4778999999999987742 34444444
No 279
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=36.99 E-value=41 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.+-+++.+.|+++++|+++.+|++..--|.
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G 40 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVNTPG 40 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEECCC
Confidence 456899999999999999999999765553
No 280
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=36.90 E-value=1.2e+02 Score=24.43 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=50.6
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.-+|-|.||-+|+...-..--.+...+.++.||..|... .++-.+...-||+.-.+-|.-+.-|+
T Consensus 109 ePkidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~d------te~A~aTfNfLNaEgR~VaaAL~Pp~ 173 (196)
T KOG3363|consen 109 EPKIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVD------TENAAATFNFLNAEGRYVAAALLPPG 173 (196)
T ss_pred CCCccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEec------chhhhhHhhhccccccEEEEEecCCc
Confidence 346778889999876554445567788999999988874 36788999999999998888776553
No 281
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=36.70 E-value=1.7e+02 Score=21.60 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCCceEEEEEECCCcc-----hHHH---HHHHHHHHHHcC--ceeeeecCCCCCC-------HHHHHHHHHHhcCC-CCC
Q 031035 37 GKVPGLAVVIVGGRKD-----SQSY---VSMKRKACAEVG--IKSFDIDLPEQVS-------EAELISKVHELNVM-PDV 98 (167)
Q Consensus 37 g~~P~Laii~vg~d~a-----s~~Y---~~~k~k~~~~~G--i~~~~~~l~~~~~-------~~el~~~I~~lN~D-~~V 98 (167)
..+|.+++|.+|.|.. ...| .+...+.+++.+ ........+.... -.++.+.++++.+. .++
T Consensus 48 ~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~~~~~~~~~~n~~~~~~a~~~~~v 127 (171)
T cd04502 48 PYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARWALRPKIRRFNALLKELAETRPNL 127 (171)
T ss_pred cCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcchhhHHHHHHHHHHHHHHHhcCCCe
Confidence 3579999999998653 3334 334445555543 3333433322221 12344555555442 333
Q ss_pred cEEEEeCCCCCCCCHHHHHhcCCCCC-CcccCCcccHHHhhc
Q 031035 99 HGILVQLPLPKHINEEKVLGEISLEK-DVDGFHPLNIGKLAM 139 (167)
Q Consensus 99 ~GIlvq~PLP~~id~~~i~~~I~P~K-DVDGl~~~NlG~l~~ 139 (167)
+ +.++...+.... ....+.. -.||+||.-.|.-..
T Consensus 128 ~----~vD~~~~~~~~~--~~~~~~~~~~DGlH~n~~Gy~~~ 163 (171)
T cd04502 128 T----YIDVASPMLDAD--GKPRAELFQEDGLHLNDAGYALW 163 (171)
T ss_pred E----EEECcHHHhCCC--CCcChhhcCCCCCCCCHHHHHHH
Confidence 3 223222221000 0011111 249999988886443
No 282
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=36.61 E-value=1.8e+02 Score=21.62 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHcCceeeeecCCCCCCHHHHHHHHHH--------h--cCCCC-CcEEEEeCCCCCCCCHHHHHhcCCCCCCccc
Q 031035 60 KRKACAEVGIKSFDIDLPEQVSEAELISKVHE--------L--NVMPD-VHGILVQLPLPKHINEEKVLGEISLEKDVDG 128 (167)
Q Consensus 60 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~--------l--N~D~~-V~GIlvq~PLP~~id~~~i~~~I~P~KDVDG 128 (167)
..+.-.+.||.++.+..|...|-+++.+.... + ..+.. -.=+++..|--.++|..++.+.+... ++.-
T Consensus 4 v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~~~~~~v~~~kl~~~~g~~-~l~~ 82 (153)
T cd04336 4 LQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLPADKKLDLKAVAAAVGGK-KADL 82 (153)
T ss_pred HHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEEeCccccCHHHHHHHhCCC-cccc
Confidence 45567788999999988887776666544211 1 11110 01378888888899999999888652 3555
Q ss_pred CCcccHHHhhccCCCCCCCC
Q 031035 129 FHPLNIGKLAMKGRDPLFLP 148 (167)
Q Consensus 129 l~~~NlG~l~~g~~~~~~~P 148 (167)
.++..+-+++ |- ..+++|
T Consensus 83 a~~~~l~~~~-g~-~~G~v~ 100 (153)
T cd04336 83 ASPEEAEELT-GC-VIGAVP 100 (153)
T ss_pred CCHHHHHHHh-CC-ccccCC
Confidence 5555555555 32 344443
No 283
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=36.57 E-value=1.1e+02 Score=26.44 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC---
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM--- 95 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D--- 95 (167)
+.+++.+.+.+..+... ..+|.+.-|-+|... ...+.-+|.-..+.+|..-..-..+. -++++++.|++|-=-
T Consensus 166 e~i~~fVletv~~~G~~-~CPP~~vgiGIGgt~-e~A~~LaKkal~r~i~~~~~~~~~~~--~eeelLe~iN~LGIG~~G 241 (297)
T COG1951 166 EGIKDFVLETVRTLGGN-ACPPYIVGIGIGGTA-EKAALLAKKALLRPIDDRNPNEKNAK--LEEELLEEINKLGIGPQG 241 (297)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCeeEEEEeCCcH-HHHHHHHHHHhhCcccccCCCccchh--HHHHHHHHHHhhCcCccc
Confidence 66777777777766433 679999999999654 45555568888888888655554443 468888888877533
Q ss_pred ----CCCcEEEEeCCCCCCC
Q 031035 96 ----PDVHGILVQLPLPKHI 111 (167)
Q Consensus 96 ----~~V~GIlvq~PLP~~i 111 (167)
-.++|+-|-. .|.|.
T Consensus 242 lGG~tTaldV~V~~-~p~H~ 260 (297)
T COG1951 242 LGGKTTALDVKVER-APRHP 260 (297)
T ss_pred CCCceEEEEEEEEe-ccCCc
Confidence 3456666543 24443
No 284
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=36.32 E-value=1.6e+02 Score=25.49 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=40.1
Q ss_pred eeeecCCCCCCHHHHHHH----HHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 71 SFDIDLPEQVSEAELISK----VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 71 ~~~~~l~~~~~~~el~~~----I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
++.+.|..+.+.+++.+. |+++++ -+|+|++-=|+.+---+.....+.-..+++-++-.|+..|+.
T Consensus 31 v~~v~~~~~~~~~~~~~~l~~~i~~~~~---~d~vlILtDl~GGSP~N~a~~~~~~~~~v~vItGvNLpMLLe 100 (322)
T PRK15088 31 VAWIDFVPGENAETLIEKYNAQLAKLDT---SKGVLFLVDTWGGSPFNAASRIVVDKENYEVITGVNIPMLVE 100 (322)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHHhcCC---CCCEEEEEeCCCCCHHHHHHHHHhccCCeEEEEcCCHHHHHH
Confidence 445555555555555544 444433 368888888887765555455444445677778888877654
No 285
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=36.29 E-value=1.8e+02 Score=22.99 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcC--ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVG--IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~G--i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+++++.-+ +++--..-++...+.|++.| .-......+..-+.+...+.++.+.. .|+||++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~vdgiii 64 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA--RSDGVAL 64 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh--cCCEEEE
No 286
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=36.17 E-value=3.3e+02 Score=24.56 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=72.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC-CCCCHHHHHhc
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP-KHINEEKVLGE 119 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP-~~id~~~i~~~ 119 (167)
+.+++....--.+..-++....-..+.|+.++.+.+... +.+|+.+.|.. -.|++|=.|-- .+.- -.+..+
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-~~~eI~~~i~~------a~~~vvGsPT~~~~~~-p~i~~~ 319 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-DPSEIVEEILD------AKGLVVGSPTINGGAH-PPIQTA 319 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-CHHHHHHHHhh------cceEEEecCcccCCCC-chHHHH
Confidence 688888877778888899999999999999999999876 66777777766 47999998832 1221 112222
Q ss_pred CCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhcc
Q 031035 120 ISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLIN 162 (167)
Q Consensus 120 I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~ 162 (167)
+. .|.|+.+.|..-...| ..+.-.+--.=+.+.|+..|
T Consensus 320 l~---~v~~~~~~~k~~~vfg--S~GW~g~av~~i~~~l~~~g 357 (388)
T COG0426 320 LG---YVLALAPKNKLAGVFG--SYGWSGEAVDLIEEKLKDLG 357 (388)
T ss_pred HH---HHHhccCcCceEEEEe--ccCCCCcchHHHHHHHHhcC
Confidence 21 2345556665555555 34555555555566665544
No 287
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=36.17 E-value=1.2e+02 Score=22.65 Aligned_cols=62 Identities=6% Similarity=-0.030 Sum_probs=40.7
Q ss_pred HHHHHHHcCceeeeecCCCCC---CHHHHHHHHH----H------hcCCCCCcEEEEeCCCCCCCCHHHHHhcCCC
Q 031035 60 KRKACAEVGIKSFDIDLPEQV---SEAELISKVH----E------LNVMPDVHGILVQLPLPKHINEEKVLGEISL 122 (167)
Q Consensus 60 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~----~------lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P 122 (167)
..+..++.||.++.++.+... +.+++.+... + +..+.. .-+++..|=..++|..++.+.+..
T Consensus 3 ~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g~~~~~~~Ktlv~~~~~~-~~~lv~~~gd~~ld~~kl~~~lg~ 77 (152)
T TIGR00011 3 AIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLGVDPHRVFKTLVAEGDKK-GPVVAVIPGDEELDLKKLAKASGG 77 (152)
T ss_pred HHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhCCCHHHeEEEEEEEcCCC-cEEEEEEECCceeCHHHHHHHhCC
Confidence 346678889999999988652 3455555442 1 011111 248888888899999999888743
No 288
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.15 E-value=1.7e+02 Score=21.25 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=45.8
Q ss_pred CCCceEEEEEECCCcch-----HHHHHHHHHHHHHc-----CceeeeecCCCCCC------HHHHHHHHHHhcCCC---C
Q 031035 37 GKVPGLAVVIVGGRKDS-----QSYVSMKRKACAEV-----GIKSFDIDLPEQVS------EAELISKVHELNVMP---D 97 (167)
Q Consensus 37 g~~P~Laii~vg~d~as-----~~Y~~~k~k~~~~~-----Gi~~~~~~l~~~~~------~~el~~~I~~lN~D~---~ 97 (167)
...|.+++|.+|.|... ..|.+...+..+.+ +..+-...++.... .+++-+.++++-+.- .
T Consensus 38 ~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~n~~l~~~~~~~~~~~ 117 (157)
T cd01833 38 AAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDASGNARIAEYNAAIPGVVADLRTAG 117 (157)
T ss_pred cCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 35899999999987643 24444444443333 44444443433222 233333444443321 1
Q ss_pred CcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhcc
Q 031035 98 VHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMK 140 (167)
Q Consensus 98 V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g 140 (167)
. ++. ..++...+.. ..=-.||+||.-.|.-..+
T Consensus 118 ~-~v~-~vd~~~~~~~--------~~~~~Dg~Hpn~~Gy~~~a 150 (157)
T cd01833 118 S-PVV-LVDMSTGYTT--------ADDLYDGLHPNDQGYKKMA 150 (157)
T ss_pred C-CEE-EEecCCCCCC--------cccccCCCCCchHHHHHHH
Confidence 2 222 2233333321 1123589999888765543
No 289
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.09 E-value=3e+02 Score=24.13 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC------CCHHHHHHHHHHhcCCCC
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ------VSEAELISKVHELNVMPD 97 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~------~~~~el~~~I~~lN~D~~ 97 (167)
++.+.+..+.++.+....+-.+++..=-+|.-.++...+.++.+|+.+.++.+.+. .+.+++.+..+.|.+
T Consensus 240 ~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~~~~~~~ps~e~i~~F~~~L~~--- 316 (342)
T PRK14465 240 ELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTEFFGWRRPTDDEVAEFIMLLEP--- 316 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHH---
Confidence 34444444444447778888888876668889999999999999999998888542 344555554444433
Q ss_pred CcEEEEeCCCCCCCCHHH
Q 031035 98 VHGILVQLPLPKHINEEK 115 (167)
Q Consensus 98 V~GIlvq~PLP~~id~~~ 115 (167)
+||-+..=-..+.|...
T Consensus 317 -~Gi~v~~R~~~G~di~a 333 (342)
T PRK14465 317 -AGVPILNRRSPGKDIFG 333 (342)
T ss_pred -CCCeEEEeCCCCcChhh
Confidence 35555444344444333
No 290
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=36.08 E-value=1e+02 Score=21.98 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-cCc---eeeeecCCCCCCHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCC
Q 031035 56 YVSMKRKACAE-VGI---KSFDIDLPEQVSEAELISKVHELN-VMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130 (167)
Q Consensus 56 Y~~~k~k~~~~-~Gi---~~~~~~l~~~~~~~el~~~I~~lN-~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~ 130 (167)
|++...+.++. .|- .+..+.++.+.+.+++.+.+++.= +-+.=+|++|+-=|+.+.--+.......-.+.+.-++
T Consensus 10 ~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~ 89 (116)
T PF03610_consen 10 LAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVIS 89 (116)
T ss_dssp HHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEE
T ss_pred HHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEe
Confidence 34444444444 233 455666677767655554443332 2233479999988887765555555555554566666
Q ss_pred cccHHHhh
Q 031035 131 PLNIGKLA 138 (167)
Q Consensus 131 ~~NlG~l~ 138 (167)
..|+.-+.
T Consensus 90 G~Nlpmll 97 (116)
T PF03610_consen 90 GVNLPMLL 97 (116)
T ss_dssp S--HHHHH
T ss_pred cccHHHHH
Confidence 66665554
No 291
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=35.96 E-value=2.5e+02 Score=23.11 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCC-CCC----cccC-Cc
Q 031035 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKD----VDGF-HP 131 (167)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P-~KD----VDGl-~~ 131 (167)
+...+.|++.|+.+... + ++ .++++....+-.||+...+.|..++...+.+.+.- .++ +|++ .|
T Consensus 37 ~~~~~~~~~~~i~~~~v------~-~~---~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp 106 (244)
T PRK11181 37 LPLINELEAQGIVIQLA------N-RQ---TLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDP 106 (244)
T ss_pred HHHHHHHHHcCCcEEEe------C-HH---HHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCCc
Confidence 44567888889876654 2 22 34455556667788887765544322222221110 112 3555 79
Q ss_pred ccHHHhhc
Q 031035 132 LNIGKLAM 139 (167)
Q Consensus 132 ~NlG~l~~ 139 (167)
.|+|.++.
T Consensus 107 ~NlGai~R 114 (244)
T PRK11181 107 HNLGACLR 114 (244)
T ss_pred chHHHHHH
Confidence 99999986
No 292
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=35.54 E-value=3e+02 Score=24.10 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC-------CCCHHHHHHHHHHhcC
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE-------QVSEAELISKVHELNV 94 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~-------~~~~~el~~~I~~lN~ 94 (167)
++.+.+.++.++.|.+.++-.+++..--+|.-.++...+.++.+++.+..+.+.+ ..+++++.+.-+.|.+
T Consensus 243 ~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 243 TLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMS 320 (355)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444444443444788999999999888899999999999999877777665533 2345555555555543
No 293
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.49 E-value=1.8e+02 Score=21.32 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=61.3
Q ss_pred EEEEEECCC------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC---CCCCCCC
Q 031035 42 LAVVIVGGR------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL---PLPKHIN 112 (167)
Q Consensus 42 Laii~vg~d------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~---PLP~~id 112 (167)
.++|.+|+. .+++.+ .....+++.|.+......-. .+.+++.+.|+++-++ .|-|++-= +=|..+-
T Consensus 2 v~ii~~G~El~~g~i~d~n~~--~l~~~l~~~G~~v~~~~~v~-Dd~~~i~~~i~~~~~~--~DlvittGG~g~g~~D~t 76 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGP--ALEALLEDLGCEVIYAGVVP-DDADSIRAALIEASRE--ADLVLTTGGTGVGRRDVT 76 (133)
T ss_pred EEEEEeCccccCCceEEchHH--HHHHHHHHCCCEEEEeeecC-CCHHHHHHHHHHHHhc--CCEEEECCCCCCCCCcch
Confidence 456666652 244443 46666888998877663332 3667888888887544 56666642 2233333
Q ss_pred HHHHHhcCCCCCCcc--cCC--cccHHHhhccCCCCCC-CCchHHHHHHHhhhc
Q 031035 113 EEKVLGEISLEKDVD--GFH--PLNIGKLAMKGRDPLF-LPCTPKAIILYSCLI 161 (167)
Q Consensus 113 ~~~i~~~I~P~KDVD--Gl~--~~NlG~l~~g~~~~~~-~PcTp~avi~lL~~~ 161 (167)
.+.+.+.. .+.+. |+. |-+-+.+..-+...-| +|.-|.|+...++.+
T Consensus 77 ~~ai~~~g--~~~~~g~~~~~~pg~~~~~~~~~~~~i~~LPG~p~a~~~~~~~~ 128 (133)
T cd00758 77 PEALAELG--EREAHGKGVALAPGSRTAFGIIGKVLIINLPGSPKSALTTFEAL 128 (133)
T ss_pred HHHHHHhc--CEEeccCcccccCCCceEEEEECCEEEEECCCCHHHHHHHHHHh
Confidence 33343333 45555 442 2221111110112333 699999998777654
No 294
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.43 E-value=1.7e+02 Score=21.08 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=26.2
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
+..|..-+|..-++..++.|++.|++++....+.
T Consensus 6 lvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~ 39 (104)
T PRK09590 6 IICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITA 39 (104)
T ss_pred EECCCchHHHHHHHHHHHHHHHCCCceEEEEecH
Confidence 4445555666888888999999999988877653
No 295
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=35.41 E-value=82 Score=23.83 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=29.9
Q ss_pred EEEECCCcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 44 ii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
+..||+|++...-.|..-|..++.|.+...+++.
T Consensus 107 ieiv~~d~~~~~~aR~r~r~Yr~~G~~l~~~~~~ 140 (142)
T PRK05728 107 VDFVGYDEAAKQAARERWKAYRAAGYALTYWQQG 140 (142)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCCCCceEecCC
Confidence 4455999999999999999999999999888764
No 296
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=35.10 E-value=2.5e+02 Score=22.97 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=53.4
Q ss_pred CCCceEEEEEECCCcchH--HHHHHHHHHHHHcCceeeeecCCC-----CC--CHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQ--SYVSMKRKACAEVGIKSFDIDLPE-----QV--SEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~--~Y~~~k~k~~~~~Gi~~~~~~l~~-----~~--~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
...+++++|.-.-+++|. .=++...+.+...|++++.+.+++ .. ...++.+.-+.+.+ -||+++-.|-
T Consensus 24 ~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~---ADgvii~TPE 100 (219)
T TIGR02690 24 PHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEW---SEGQVWCSPE 100 (219)
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHh---CCEEEEeCCc
Confidence 456788777666666654 446677777887799999886631 11 11122222222221 3899999998
Q ss_pred CCCCCHHHHHhcCCCCC
Q 031035 108 PKHINEEKVLGEISLEK 124 (167)
Q Consensus 108 P~~id~~~i~~~I~P~K 124 (167)
..|-=.-.+.++|+-..
T Consensus 101 Yn~sipg~LKNaiDwls 117 (219)
T TIGR02690 101 RHGAITGSQKDQIDWIP 117 (219)
T ss_pred cccCcCHHHHHHHHhcc
Confidence 87766666777776544
No 297
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=35.04 E-value=2.5e+02 Score=22.89 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=58.7
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCCHHH
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQLPLPKHINEEK 115 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP~~id~~~ 115 (167)
...|.++++.-...+.++.=++..++.+....|-..-+-+-.+. =.+++.+..|... -+-.|..-.-+++ .++..+
T Consensus 102 ~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~--f~fL~kLD~l~gR~vDNa~Ff~~~d~~-~lsD~e 178 (200)
T PF10138_consen 102 SDAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN--FGFLEKLDDLAGRVVDNAGFFAIDDID-ELSDEE 178 (200)
T ss_pred CCCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc--chHHHHhhccCCcccCCcCeEecCCcc-cCCHHH
Confidence 34699999999999999999999999999999988888886643 4555555554222 1345677777777 777766
Q ss_pred HHhcC
Q 031035 116 VLGEI 120 (167)
Q Consensus 116 i~~~I 120 (167)
+.+.+
T Consensus 179 Ly~~L 183 (200)
T PF10138_consen 179 LYDRL 183 (200)
T ss_pred HHHHH
Confidence 66543
No 298
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=34.84 E-value=1.6e+02 Score=24.41 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=28.2
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCcee---eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKS---FDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~---~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+|++..+.|+-...++..+...++.|+.- +......+-+.+.+.+.++++.+. ..|=|+.
T Consensus 2 v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~-~~DlIi~ 65 (294)
T PF04392_consen 2 VGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQ-KPDLIIA 65 (294)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCT-S-SEEEE
T ss_pred eEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEE
Confidence 456666666666666666666666666654 222223344455555555555443 3554443
No 299
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.75 E-value=2.3e+02 Score=23.54 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=42.7
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHH
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEK 115 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~ 115 (167)
+-.| .-.|.||++++..-- +...+. ..+||.+.+.+|+-+.-++|++=+ ---.+|+|+++|...
T Consensus 152 ~~vP-V~~i~vG~gegQVpL-~kL~~~---------l~KLp~~lt~~ev~~v~~RL~AL~----~~~~~piPKG~dP~~ 215 (224)
T PF13829_consen 152 GNVP-VHDIIVGNGEGQVPL-RKLQKT---------LMKLPRNLTKAEVDAVNKRLRALG----RKPGLPIPKGPDPTR 215 (224)
T ss_pred CCCC-eEEEEecCCCCceeH-HHHHHH---------HHhCCccCCHHHHHHHHHHHHHhc----CCCCCCCCCCCCCCC
Confidence 4456 566889988765433 233333 346788888888888777776654 223579999999765
No 300
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=34.74 E-value=2.5e+02 Score=23.05 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=45.0
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|.. +++-....++.-.+.+++.|+.+.. ..++...++.++...++++.+.. .+.|++...
T Consensus 162 ~v~~l~~-~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vvv~~~~ 226 (348)
T cd06350 162 WVGLVYS-DDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSST-ARVIVVFGD 226 (348)
T ss_pred EEEEEEe-cchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCC-CcEEEEEeC
Confidence 5777765 4555777888888999999998754 44555434667888888876654 377877655
No 301
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=34.71 E-value=36 Score=22.37 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=28.0
Q ss_pred cCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|++..-+.+++.| .+..-|-|+.-|.+.++.+|.
T Consensus 11 gvS~~TVSr~ln~--~~~v~~~t~~~i~~~~~~~gy 44 (70)
T smart00354 11 GVSKATVSRVLNG--NGRVSEETREKVLAAMEELGY 44 (70)
T ss_pred CCCHHHHHHHHCC--CCCCCHHHHHHHHHHHHHhCC
Confidence 6777777888877 566778899999999999885
No 302
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=34.64 E-value=2e+02 Score=24.12 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=42.0
Q ss_pred EEEECCCcchHHHHH-HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 44 VVIVGGRKDSQSYVS-MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 44 ii~vg~d~as~~Y~~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.-.+|+ |-+++.-- .--...+++|++...+.+.. .+.+++.+.++.+. .++.|.-|-+|..
T Consensus 8 ~~liG~-Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-~~~~~l~~~~~~~~--~~~~G~nVT~P~K 69 (282)
T TIGR01809 8 AFIIGK-PIAHSRSPHLHNAGYEILGLPDKTYEFET-CSAEELKEVLSGFG--PQFGGASVTIPLK 69 (282)
T ss_pred EEEEcC-CchhccCHHHHHHHHHHcCCCcEEEeeec-CCHHHHHHHHHhcC--CCCcEEEECCCCH
Confidence 455674 53333322 34457899999888777753 23578999999883 3799999999975
No 303
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=34.58 E-value=2.6e+02 Score=23.16 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=45.1
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.++|... ++-.....+...+.+++.|+++.... ++...++.++...+.++.+. +.+.|++..+-+
T Consensus 137 ~v~ii~~~-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~dvvi~~~~~~ 203 (350)
T cd06366 137 RVATIYED-DDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEK-DSRVIVVHFSPD 203 (350)
T ss_pred EEEEEEEc-CcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcC-CCeEEEEECChH
Confidence 67777655 44555667788889999999976554 44433467888888888643 257777766633
No 304
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=34.56 E-value=53 Score=31.63 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
+.+.+|.+.++.++++++. |+++ ++.-||++.... ..|+++||..
T Consensus 439 l~Dp~R~~a~~aI~~l~~a-GI~v---~miTGD~~~tA~------~IA~~lGI~~ 483 (755)
T TIGR01647 439 LFDPPRHDTKETIERARHL-GVEV---KMVTGDHLAIAK------ETARRLGLGT 483 (755)
T ss_pred ccCCChhhHHHHHHHHHHC-CCeE---EEECCCCHHHHH------HHHHHcCCCC
Confidence 5667889999999999877 8764 455688876544 4688999953
No 305
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=34.37 E-value=2.4e+02 Score=22.49 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=41.0
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC-HHHHHHHHHHhcCCCCCcE
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-EAELISKVHELNVMPDVHG 100 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-~~el~~~I~~lN~D~~V~G 100 (167)
.++.+|...+-.....-+....+.+++-||.+..+-|-+... .+-+...++..|.+++=|=
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~ 169 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHL 169 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceE
Confidence 354444433324444456678889999999999999975544 4566668888887766443
No 306
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=34.22 E-value=41 Score=33.00 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
+.+.+|++.++-|+++++. |+++ ++.-||++... ...|+++||.
T Consensus 512 l~Dp~R~~~~~aI~~l~~a-GI~v---vmiTGD~~~tA------~aIA~~lGI~ 555 (867)
T TIGR01524 512 FLDPPKESTKEAIAALFKN-GINV---KVLTGDNEIVT------ARICQEVGID 555 (867)
T ss_pred eeCCCchhHHHHHHHHHHC-CCEE---EEEcCCCHHHH------HHHHHHcCCC
Confidence 4556789999999999876 8764 45559887755 4569999996
No 307
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=34.13 E-value=2.1e+02 Score=21.84 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=60.7
Q ss_pred EEEEECCCc-chHHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhcCCCCC-cEEEEeCCCCCCCCHHHHHhc
Q 031035 43 AVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELNVMPDV-HGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 43 aii~vg~d~-as~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V-~GIlvq~PLP~~id~~~i~~~ 119 (167)
.+|.++-.. |+..+-....-..+.-++. .+.|.++ .+.+.+.+.+..+-+..+- +|+|+.-=|..+---+.....
T Consensus 3 ~iii~tHG~~A~~l~~s~emi~G~q~nv~--~v~~~~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l 80 (143)
T COG2893 3 GIIIATHGRFAEGLLNSLEMILGEQENVE--AVDFVPGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRL 80 (143)
T ss_pred eEEEEeCHHHHHHHHHHHHHHhCcHhceE--EEEeecCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHH
Confidence 344444433 3333333333333334443 3444444 5667777788877775444 899999999988877777778
Q ss_pred CCCCCCcccCCcccHHHhhc
Q 031035 120 ISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 120 I~P~KDVDGl~~~NlG~l~~ 139 (167)
+...+.++=++-.|+-.|..
T Consensus 81 ~~~~~~~~viaGvNLPmLle 100 (143)
T COG2893 81 AMEGPRVEVIAGVNLPMLLE 100 (143)
T ss_pred HhhCCCceEEecCCHHHHHH
Confidence 88888878788888877654
No 308
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=34.08 E-value=2.3e+02 Score=22.14 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=36.5
Q ss_pred eEEEEEECCC--cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH-hcCCCCCcEEEEe
Q 031035 41 GLAVVIVGGR--KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~d--~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~-lN~D~~V~GIlvq 104 (167)
+++++.-..+ +.+....+.-.+.+++.|+.+.......+.+.++..+.+++ |++.+.+++|+..
T Consensus 114 ~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 180 (265)
T cd06291 114 HIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFDDAEKKEEIKELLEEYPDIDGIFAS 180 (265)
T ss_pred EEEEEccCcccccchHHHHHHHHHHHHHcCCCCChheeeccccchHHHHHHHHHHhCCCCCCEEEEC
Confidence 4555542222 34455566778888888987654443333333333344443 4556678999884
No 309
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.00 E-value=1.2e+02 Score=26.00 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=50.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.|+-|..-|.....+.|.+..+ +.|+.-. .+...++..-....+...+.-+.-.++.-.+++ |+..++.+++
T Consensus 36 aii~vg~~~as~~Yv~~k~k~a~---~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~ 110 (286)
T PRK14175 36 SVILVGNDGASQSYVRSKKKAAE---KIGMISE--IVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKIL 110 (286)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 45566665566665554443332 2376544 455566654455555555555555555555555 5889888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.|. -+.+|||+=
T Consensus 111 ~~I~---p~KDVDGl~ 123 (286)
T PRK14175 111 EAIN---PEKDVDGFH 123 (286)
T ss_pred hccC---cccCcccCC
Confidence 6554 478899973
No 310
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.94 E-value=1.3e+02 Score=25.79 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=53.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-. .+...++.....-.+...+.-+.-.++.-.+++| +..++++++
T Consensus 36 aii~vg~d~as~~Yv~~k~k~a---~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~ 110 (278)
T PRK14172 36 ASILVGNDGGSIYYMNNQEKVA---NSLGIDFK--KIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKIT 110 (278)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 4456665556655554443332 22376544 4555666555666667777777766666667665 888887766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+.+|||+=
T Consensus 111 ~~I---~p~KDVDGl~ 123 (278)
T PRK14172 111 NKI---DANKDIDCLT 123 (278)
T ss_pred hcc---CcccccCccC
Confidence 655 4478899974
No 311
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.79 E-value=1.2e+02 Score=25.90 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=51.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-.+ +...++.......+...+.-+.-.++.-.+++ |+..++++++
T Consensus 34 aii~vg~d~as~~Yv~~k~k~a~---~~Gi~~~~--~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~ 108 (282)
T PRK14166 34 AVILVGDNPASQTYVKSKAKACE---ECGIKSLV--YHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLIL 108 (282)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 45566666666665555444332 23765444 44455544445666666666666666666665 4889888776
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.|. -+.+|||+=
T Consensus 109 ~~I~---p~KDVDGl~ 121 (282)
T PRK14166 109 ESII---SSKDVDGFH 121 (282)
T ss_pred hccC---cccCcccCC
Confidence 6554 477888874
No 312
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=33.73 E-value=2e+02 Score=25.69 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCceEEEEEECCCc-------------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRK-------------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~-------------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|+.++|..|+.- +|+.|. ....+++.|+++..+..-. .+.+++.+.|+++ ..+.|-||.-
T Consensus 176 ~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~--l~a~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~a--~~~~DlvItt 250 (411)
T PRK10680 176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLA--VHLMLEQLGCEVINLGIIR-DDPHALRAAFIEA--DSQADVVISS 250 (411)
T ss_pred CCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHH--HHHHHHHCCCEEEEEEEeC-CCHHHHHHHHHHh--ccCCCEEEEc
Confidence 46999999888631 456664 6677899999877664433 3568888899886 3446666664
Q ss_pred CCCCC-CCC-HHHHHhcCCCCCCcccCC-----cccHHHhhccCCCCCC-CCchHHHHHHHhhh
Q 031035 105 LPLPK-HIN-EEKVLGEISLEKDVDGFH-----PLNIGKLAMKGRDPLF-LPCTPKAIILYSCL 160 (167)
Q Consensus 105 ~PLP~-~id-~~~i~~~I~P~KDVDGl~-----~~NlG~l~~g~~~~~~-~PcTp~avi~lL~~ 160 (167)
-=.-. ..| ..++++.+. +--+.|+. |.-+|++ ++ .+-| +|..|.|++..++.
T Consensus 251 GG~S~G~~D~~~~al~~lG-~~~f~~v~~kPGkp~~~g~~--~~-~~v~gLPGnP~sa~~~~~~ 310 (411)
T PRK10680 251 GGVSVGEADYTKTILEELG-EIAFWKLAIKPGKPFAFGKL--SN-SWFCGLPGNPVSAALTFYQ 310 (411)
T ss_pred CCCCCCCcchHHHHHHhcC-cEEEEEEEEecCcceEEEEE--CC-eEEEECCCCHHHHHHHHHH
Confidence 32221 122 133444433 22333332 2222222 21 3333 68888888665543
No 313
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=33.66 E-value=1.2e+02 Score=21.68 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhc
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELN 93 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN 93 (167)
-.|-+...+..++-||.|+.+.+.++ .+.+++.+.+.+++
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 34555566666777777777766433 34556666555543
No 314
>PLN02285 methionyl-tRNA formyltransferase
Probab=33.65 E-value=1.3e+02 Score=26.14 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 60 KRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 60 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
..+.|++.||.+.++.-|.....+++++.++.++-|
T Consensus 60 v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~D 95 (334)
T PLN02285 60 VAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPD 95 (334)
T ss_pred HHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCC
Confidence 457799999997655446666677888888887666
No 315
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=33.64 E-value=54 Score=27.38 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=38.8
Q ss_pred EECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 46 ~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.-|+||+=..........|+++|+..+..+|+=--| .+++.+|+.=...
T Consensus 178 ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS-~DF~~AIe~Gst~ 226 (244)
T KOG3157|consen 178 SSGENPDFQVLVKLRESICKKLGIPADQVELSMGMS-ADFLLAIEQGSTN 226 (244)
T ss_pred cCCCCccHHHHHHHHHHHHHHhCCChHHhhhhcccc-hhHHHHHHhCCce
Confidence 346778888888999999999999988888876655 6788888864443
No 316
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.62 E-value=1.2e+02 Score=25.14 Aligned_cols=34 Identities=12% Similarity=-0.083 Sum_probs=16.5
Q ss_pred eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 70 ~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.++++.....-+.++..+..++|-+++.|++|+.
T Consensus 40 ~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig 73 (341)
T cd06341 40 PIEYVWCDDQGDPASAAACARDLVEDDKVVAVVG 73 (341)
T ss_pred eEEEEEecCCCChhHHHHHHHHHHHhcCceEEEe
Confidence 3344443333344445555555555555555555
No 317
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=33.60 E-value=2e+02 Score=21.63 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=26.7
Q ss_pred CceEEEEEECCCcchHHH------HHHH---HHHHHHcCceeeeecCCCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSY------VSMK---RKACAEVGIKSFDIDLPEQVS 81 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y------~~~k---~k~~~~~Gi~~~~~~l~~~~~ 81 (167)
...+.+|.-|.+.++..| .+.. .+.+.+.||.+..+-+..+.+
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 104 RKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred CcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 334555555655555433 2222 667788899999888877664
No 318
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=33.52 E-value=1.9e+02 Score=23.59 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCc-----eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 55 SYVSMKRKACAEVGI-----KSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi-----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
.+.+....++++.|- .++++......+.+.-.+.+++|-+++.|+||+
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~ii 70 (336)
T cd06360 18 DITRGFELALQEAGGKLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVV 70 (336)
T ss_pred hHHHHHHHHHHHhCCCcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEE
Confidence 445555555555531 234444444445566667777776666677755
No 319
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.30 E-value=88 Score=29.67 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCC
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDV 98 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 98 (167)
+-++-.+++++++|++- |++-. ..-||||-...|+ +++.|++ .|-.+.++|+=++.|++--+.
T Consensus 446 DivK~Gi~ERf~elR~M-gIkTv---M~TGDN~~TAa~I------A~EAGVD----dfiAeatPEdK~~~I~~eQ~~--- 508 (681)
T COG2216 446 DIVKPGIKERFAELRKM-GIKTV---MITGDNPLTAAAI------AAEAGVD----DFIAEATPEDKLALIRQEQAE--- 508 (681)
T ss_pred hhcchhHHHHHHHHHhc-CCeEE---EEeCCCHHHHHHH------HHHhCch----hhhhcCChHHHHHHHHHHHhc---
Confidence 34678899999999765 77654 4459999877775 7889997 666777889989999886554
Q ss_pred cEEEEeC
Q 031035 99 HGILVQL 105 (167)
Q Consensus 99 ~GIlvq~ 105 (167)
|=||-+
T Consensus 509 -grlVAM 514 (681)
T COG2216 509 -GRLVAM 514 (681)
T ss_pred -CcEEEE
Confidence 555554
No 320
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=33.29 E-value=77 Score=26.36 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.--..++++|+++....+. +.++++.+.++.+... ++.|.-|-+|.-
T Consensus 23 ~hn~~~~~~gl~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K 69 (278)
T PRK00258 23 IHNAAFKQLGLDGVYLAIL--VPPEDLEDAVKGFFAL-GGRGANVTVPFK 69 (278)
T ss_pred HHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhC-CCCEEEECcCCH
Confidence 3466789999998887663 4567888888888765 699999999965
No 321
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.14 E-value=1.2e+02 Score=26.08 Aligned_cols=114 Identities=12% Similarity=0.198 Sum_probs=67.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+.. ++.|+.-.+ +...++-......+...+.-+.-.++...+++| +..++.+++
T Consensus 36 aiI~vg~d~as~~Yv~~k~k~a---~~~Gi~~~~--~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~ 110 (284)
T PRK14193 36 GTVLVGDDPGSQAYVRGKHRDC---AEVGITSIR--RDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVL 110 (284)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4566666666666555444332 223765444 455666666667777777777777777777665 888888766
Q ss_pred HHHHHhcCCCCCcEEEEe--------CC--CCCCCCHHHHHhcCCCCC-CcccCCcc
Q 031035 87 SKVHELNVMPDVHGILVQ--------LP--LPKHINEEKVLGEISLEK-DVDGFHPL 132 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~P--LP~~id~~~i~~~I~P~K-DVDGl~~~ 132 (167)
+.| +-..+|||+=-. .+ +| --...+++.+.... |+.|-+-.
T Consensus 111 ~~I---~p~KDVDGl~~~n~g~l~~~~~~~~P--cTp~av~~ll~~~~i~l~Gk~vv 162 (284)
T PRK14193 111 ERI---DPAKDADGLHPTNLGRLVLNEPAPLP--CTPRGIVHLLRRYDVELAGAHVV 162 (284)
T ss_pred hcC---CcccCccCCChhhhhHHhCCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEE
Confidence 655 447788987221 11 23 23455665555443 55565543
No 322
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=32.93 E-value=40 Score=30.58 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccC
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl 129 (167)
.-.|.......|+-.|+++..+.+.++...+ |+++-|++||.|=.-++=++ +.+..+--++..|+
T Consensus 164 hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d-----------~~~~a~v~vq~Pn~~G~~ed-~~~i~~~~h~~gal 228 (429)
T PF02347_consen 164 HPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD-----------DDDTAAVMVQNPNTFGVFED-IKEIADIAHAAGAL 228 (429)
T ss_dssp -CHHHHHHHHHCCHCCEEEEEE-BBTTCSB------------STTEEEEEEESS-TTSB--T-HHHHHHHHHHTT-E
T ss_pred ChhhHHHHHHhhhhCCeEEEEecccccCCcc-----------ccCeEEEEeecCCCCceEee-HHHHHHHHHHcCCE
Confidence 3445566778899999999888776543333 88999999999977665333 44444444444444
No 323
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=32.93 E-value=1.6e+02 Score=21.39 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=37.5
Q ss_pred hcccHHHH--HHH-HHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 11 IIDGKAVA--QTI-RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 11 ildGk~la--~~i-~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
.++|+++. +.+ .+++.++++...+. .|...++.-.|..++...+-.....|++.|+.-
T Consensus 63 ~~~~~~~~~~~~~~~~~L~~~L~~~~~~---~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~ 123 (129)
T TIGR02801 63 YLNDNKIDKDEQLDADELLAEIAAALAA---NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEK 123 (129)
T ss_pred EEcccccchhhhcCHHHHHHHHHHHHhh---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 46676653 112 34455555554322 355556677777788888888999999999963
No 324
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.93 E-value=2.8e+02 Score=24.07 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 56 YVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
|.+...+..++.|+++..+ .+..+.+.+.+.+.++.+.+. +++.|+=
T Consensus 39 ~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIa 86 (375)
T cd08194 39 LVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG-GCDVIIA 86 (375)
T ss_pred hHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CCCEEEE
Confidence 7777888889999998876 467777888888877776543 5677774
No 325
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=32.87 E-value=93 Score=23.90 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcC---ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVG---IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~G---i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++|++...++.+..|.+... +.| ++++.+....... ...-.+++||++--
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~----------~~~~~~~dgvil~G 54 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLR----EAGAETIEIDVVDVYAGEL----------LPDLDDYDGLVILG 54 (188)
T ss_pred CEEEEECCCCCCcchHHHHHH----hcCCCCceEEEEecCCCCC----------CCCcccCCEEEECC
Confidence 367788887777666665554 455 7888877654321 34456799999864
No 326
>PRK06988 putative formyltransferase; Provisional
Probab=32.81 E-value=80 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=33.1
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+.--+++....+.....+.|++.||.+.. |.+...+++++.++.++-|
T Consensus 32 vt~~d~~~~~~~~~~v~~~A~~~gip~~~---~~~~~~~~~~~~l~~~~~D 79 (312)
T PRK06988 32 VTHEDNPTENIWFGSVAAVAAEHGIPVIT---PADPNDPELRAAVAAAAPD 79 (312)
T ss_pred EcCCCCCccCcCCCHHHHHHHHcCCcEEc---cccCCCHHHHHHHHhcCCC
Confidence 33333454444445678999999999653 5566667888899988766
No 327
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.77 E-value=2.7e+02 Score=23.34 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHH----HHHHcCceeeeecCC-CCCCHHHHHHHHHHhcCC
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRK----ACAEVGIKSFDIDLP-EQVSEAELISKVHELNVM 95 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k----~~~~~Gi~~~~~~l~-~~~~~~el~~~I~~lN~D 95 (167)
+.++++++-.++ +|+.+ ..|..-.-..|.+.+.+ .|+++|+++..+.-- -+.++++..+.|++..+.
T Consensus 41 ~~l~eki~la~~-~~V~v-----~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 41 DIVKEKIEMYKD-YGIKV-----YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred HHHHHHHHHHHH-cCCeE-----eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 346666765544 36543 44655667777777777 999999987655321 236678999999998755
No 328
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.75 E-value=3.1e+02 Score=23.25 Aligned_cols=68 Identities=6% Similarity=-0.038 Sum_probs=45.0
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
..++++|.. +++-+....+...+.+++.|+++......+ .+..++-..+.++.+ .+.+.|++...-+.
T Consensus 140 ~~kvaiv~~-~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~D~~~~v~~i~~-~~pd~V~~~~~~~~ 207 (351)
T cd06334 140 GKKIALVYH-DSPFGKEPIEALKALAEKLGFEVVLEPVPP-PGPNDQKAQWLQIRR-SGPDYVILWGWGVM 207 (351)
T ss_pred CCeEEEEeC-CCccchhhHHHHHHHHHHcCCeeeeeccCC-CCcccHHHHHHHHHH-cCCCEEEEecccch
Confidence 356777654 677788888899999999999976554422 223456666666533 34678887655443
No 329
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.59 E-value=3.2e+02 Score=23.47 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 54 QSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..|.....+..++.|+++..+. +..+.+.+.+.+.++.+.+. +++.|+-
T Consensus 37 ~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~Iia 86 (370)
T cd08551 37 TGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE-GCDGVIA 86 (370)
T ss_pred CccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc-CCCEEEE
Confidence 3777788888899999888764 66777888888888887543 4677774
No 330
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=32.44 E-value=1.5e+02 Score=25.50 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
+|-++....++.....+...+..++++||++++..++. .++.+.+.
T Consensus 324 ~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~----~~~~~~~~ 369 (466)
T cd00995 324 ELTLLYNSDGPTRKEIAEAIQAQLKEIGIKVEIEPLDF----ATLLDALD 369 (466)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCceEEEEEech----HHHHHHhh
Confidence 56555555555777888999999999999999887643 44555443
No 331
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=32.37 E-value=2.7e+02 Score=22.58 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=51.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccC---CCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeecC---
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYG---KVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDIDL--- 76 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g---~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~l--- 76 (167)
+++.++.-.+-|+++.+++.+++++++++.. .+|....+..+++. +..+|. -..++.+|...-.-..
T Consensus 134 ~lg~~~g~e~~A~~~i~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~g~~s~~---~~ll~~~G~~n~~~~~~~~ 210 (284)
T cd01148 134 NLGKIFDVEDRADKLVADLKARLAEISAKVKGDGKKVAVFVYDSGEDKPFTSGRGGIP---NAIITAAGGRNVFADVDES 210 (284)
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCceeecccchH---HHHHHHhCCeeecccCcCC
Confidence 4577787778899999999999988876532 34544444444322 233444 3457788876432221
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 77 PEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 77 ~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
...++.|.+. +. || +-|++.-+
T Consensus 211 ~~~is~E~l~----~~--~P--D~i~~~~~ 232 (284)
T cd01148 211 WTTVSWETVI----AR--NP--DVIVIIDY 232 (284)
T ss_pred ccccCHHHHH----Hh--CC--CEEEEEec
Confidence 2245655554 33 44 35776543
No 332
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=32.31 E-value=2.5e+02 Score=22.02 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=44.5
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHH-cCceeeeecCCCCCCHHHHHHH-------------HHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAE-VGIKSFDIDLPEQVSEAELISK-------------VHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~-------------I~~lN~D~~V~GIlvq~P 106 (167)
+++||.......+..=++...+.+++ .|++++.+.+++... .++... ++.+. +-|||++--|
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~---~aD~ii~gsP 78 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVP-EEVAKKAGGKTDQAAPVATPDELA---DYDAIIFGTP 78 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCC-HHHHHhcCCCcccCCCccCHHHHH---hCCEEEEEec
Confidence 45666666555566666777777777 788888888765433 223211 33333 3469999999
Q ss_pred CCCCCCHHHHHhcC
Q 031035 107 LPKHINEEKVLGEI 120 (167)
Q Consensus 107 LP~~id~~~i~~~I 120 (167)
.-.+--...+...+
T Consensus 79 ty~g~~~~~lk~fl 92 (200)
T PRK03767 79 TRFGNMAGQMRNFL 92 (200)
T ss_pred ccCCCchHHHHHHH
Confidence 86543333333333
No 333
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.30 E-value=1.8e+02 Score=20.55 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
..-++.+.+.+.+.+|+.. |+.|-+ +++| ...|.-.+....+-.|+.+..+
T Consensus 6 ~li~il~~ie~~inELk~d-G~ePDi--vL~G----~ef~e~~~~~~l~~~~lkvy~i 56 (85)
T PF08967_consen 6 DLIRILELIEEKINELKED-GFEPDI--VLVG----PEFYEFLSEEVLEVSGLKVYVI 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T----E--EEE-----HHHHHHHHH---EETTEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHhc-CCCCCE--EEEc----HHHHHHHHHHHHHhhCceEEEH
Confidence 4456778888889999888 999975 6677 4555544445555566665543
No 334
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.20 E-value=1.5e+02 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=51.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-. .+...++-....-.+...+.-+.-.++.-.+++| +..++.+++
T Consensus 34 aii~vg~d~as~~Yv~~k~k~a~---~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~ 108 (282)
T PRK14169 34 AVVLVGSDPASEVYVRNKQRRAE---DIGVRSL--MFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVI 108 (282)
T ss_pred EEEEeCCChhHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 44566655565555554443322 2376544 4555666555556666666666666666666654 888888766
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.| +-+.+|||+
T Consensus 109 ~~I---~p~KDVDGl 120 (282)
T PRK14169 109 DAI---DPDKDVDGF 120 (282)
T ss_pred hhc---CcccCcccC
Confidence 555 457889997
No 335
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=31.99 E-value=1.1e+02 Score=22.27 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=34.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 11 ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
.++|+++.. +++...+++. .|...++.-+|..++...+-.....|++.|+.-
T Consensus 63 ~~~~~~v~~---~~L~~~l~~~------~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~ 114 (121)
T TIGR02804 63 YFNDKPISL---EELEAEIAQL------NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHEN 114 (121)
T ss_pred EECCcccCH---HHHHHHHHhh------CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCe
Confidence 467877742 3444444433 234456666777777777778999999999863
No 336
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.97 E-value=1.4e+02 Score=25.58 Aligned_cols=120 Identities=16% Similarity=0.243 Sum_probs=69.9
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-. .+...++.......+...+.-+.-.++...+++ |+..+++.++
T Consensus 36 aii~vg~d~as~~Yv~~k~k~~~---~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~ 110 (284)
T PRK14179 36 VVILVGDNPASQVYVRNKERSAL---AAGFKSE--VVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKIL 110 (284)
T ss_pred EEEEeCCChhHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 44566665566665554433322 2376554 456676666666777777777777777667775 5888888766
Q ss_pred HHHHHhcCCCCCcEEEEe--------CCCCCCCCHHHHHhcCCCCC-CcccCCcccHHH
Q 031035 87 SKVHELNVMPDVHGILVQ--------LPLPKHINEEKVLGEISLEK-DVDGFHPLNIGK 136 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~PLP~~id~~~i~~~I~P~K-DVDGl~~~NlG~ 136 (167)
+.|.- +.+|||+=-. .|-.-.--...+++.+.... |+.|-+-.=+|+
T Consensus 111 ~~I~p---~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~ 166 (284)
T PRK14179 111 LAIDP---KKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVELEGKHAVVIGR 166 (284)
T ss_pred hccCc---cccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 66554 7788887321 11111122445555555432 667766555555
No 337
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=31.95 E-value=2.7e+02 Score=22.33 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=65.2
Q ss_pred CceEEEEEECCCc------chHHHHHHHHHHHHHcCce---eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC--
Q 031035 39 VPGLAVVIVGGRK------DSQSYVSMKRKACAEVGIK---SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL-- 107 (167)
Q Consensus 39 ~P~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~---~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL-- 107 (167)
.++.+||.+++.- ++..+ .....+++.|.+ .....+|+ +.+++.+.|+++-++...|-|+.--=.
T Consensus 3 ~~~~aIItvSd~~~~G~i~D~ng~--~L~~~L~~~G~~g~~v~~~iVpD--d~~~I~~aL~~a~~~~~~DlIITTGGtg~ 78 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYEDKGIP--ALEEWLASALTSPFEIETRLIPD--EQDLIEQTLIELVDEMGCDLVLTTGGTGP 78 (193)
T ss_pred CcEEEEEEEcCcCCCCceeechHH--HHHHHHHHcCCCCceEEEEECCC--CHHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 4688999999842 23332 345566777643 33345565 457889999988665667877775322
Q ss_pred -CCCCCHHHHHhcCCCCCCcccCCc---------ccHHHhh---ccCCCCCC---CCchHHHHHHHhh
Q 031035 108 -PKHINEEKVLGEISLEKDVDGFHP---------LNIGKLA---MKGRDPLF---LPCTPKAIILYSC 159 (167)
Q Consensus 108 -P~~id~~~i~~~I~P~KDVDGl~~---------~NlG~l~---~g~~~~~~---~PcTp~avi~lL~ 159 (167)
|..+-.+.+.+.+ .|.++|+-. ...+.|. .|-....+ +|=.|.||-+-|+
T Consensus 79 g~rDvTpeAv~~l~--~keipG~~e~~r~~s~~~~~~a~LSRa~agv~~~tlI~nLPGSp~a~~~~le 144 (193)
T PRK09417 79 ARRDVTPEATLAVA--DKEMPGFGEQMRQISLKFVPTAILSRQVAVIRGQSLIINLPGQPKSIKETLE 144 (193)
T ss_pred CCCCcHHHHHHHHh--CCcCCcHHHHHHHHhcccccHHHhhcceeEEeCCEEEEECCCCHHHHHHHHH
Confidence 2333334444444 667777631 2223232 22111222 4667888877776
No 338
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=31.86 E-value=2.9e+02 Score=23.39 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=40.6
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcC--ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVG--IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~G--i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
-+.++|...++ +... ++...+.+++.| +.+....++.....+++...+.++.+. +.+.|++..+
T Consensus 127 k~vaii~~~~~-~~~~-~~~~~~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik~~-~~~~iil~~~ 192 (382)
T cd06380 127 RKVVYLYDSDR-GLLR-LQQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLDRR-KEKRIVLDCE 192 (382)
T ss_pred eEEEEEECCCc-chHH-HHHHHHHHhccCCceEEEEEEecCCCcHHHHHHHHHHhhcc-cceEEEEECC
Confidence 36777765443 3333 444567788888 777665555433457888888888764 3477777554
No 339
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=31.85 E-value=2.8e+02 Score=22.53 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=42.3
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++++| ..+++.+..+++...+.+++.|+.+......+. +..++...+.++.+. ..+.|++...
T Consensus 137 ~v~~v-~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~d~~~~l~~i~~~-~~~~vi~~~~ 199 (334)
T cd06342 137 KVAII-DDKTAYGQGLADEFKKALKAAGGKVVAREGTTD-GATDFSAILTKIKAA-NPDAVFFGGY 199 (334)
T ss_pred EEEEE-eCCcchhhHHHHHHHHHHHHcCCEEEEEecCCC-CCccHHHHHHHHHhc-CCCEEEEcCc
Confidence 56665 466677888999999999999998877664322 234566666666443 4567776543
No 340
>PLN02949 transferase, transferring glycosyl groups
Probab=31.79 E-value=3.9e+02 Score=24.13 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=51.8
Q ss_pred ceEEEEEECCC--cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHH
Q 031035 40 PGLAVVIVGGR--KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL 117 (167)
Q Consensus 40 P~Laii~vg~d--~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~ 117 (167)
|.+-++.+|+. +.+..|....++.+++.|+.- .+.|....+.+++.+.+.+. -+.+.-+..+|+- .-++
T Consensus 302 ~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~-~V~f~g~v~~~el~~ll~~a-------~~~v~~s~~E~FG-ivvl 372 (463)
T PLN02949 302 PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDG-DVEFHKNVSYRDLVRLLGGA-------VAGLHSMIDEHFG-ISVV 372 (463)
T ss_pred CCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCC-cEEEeCCCCHHHHHHHHHhC-------cEEEeCCccCCCC-hHHH
Confidence 44555666764 445678888889999999864 45566778888888888763 2555556667763 3566
Q ss_pred hcCCCCC
Q 031035 118 GEISLEK 124 (167)
Q Consensus 118 ~~I~P~K 124 (167)
+++.-.+
T Consensus 373 EAMA~G~ 379 (463)
T PLN02949 373 EYMAAGA 379 (463)
T ss_pred HHHHcCC
Confidence 7776655
No 341
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=31.74 E-value=92 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=28.2
Q ss_pred ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 74 IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 74 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..+....+.+.+.+.++.+.+||+|++|++..+
T Consensus 287 lDlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ 319 (392)
T PRK14046 287 LDVGGGASPERVAKAFRLVLSDRNVKAILVNIF 319 (392)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCCEEEEEcC
Confidence 444555788999999999999999999999766
No 342
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=31.57 E-value=2.2e+02 Score=21.27 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC--CCHHHHHhcCCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEK 124 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~--id~~~i~~~I~P~K 124 (167)
++.+++.+.|++++. +|++|+.=| .+ .+....++.++.++
T Consensus 43 t~~~~i~~ai~~~~~----dGVlVltDL-Gssp~n~~~a~e~~~~~~ 84 (124)
T PRK14484 43 TSFDQIQEAIEKNES----DGVLIFFDL-GSAEMNAEMAIEMLDGEK 84 (124)
T ss_pred chHHHHHHHHHhcCc----CCeEEEEeC-CChHHHHHHHHHhcCCCC
Confidence 456888888888844 799999888 32 45555666665443
No 343
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=31.46 E-value=1.5e+02 Score=21.16 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=36.5
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHH
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAE 66 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~ 66 (167)
|.+.+.|. -+++.+-+++..+.+.+. |..-....|+++.+++.......|.+.-++
T Consensus 40 m~T~IEGe--~dev~~~i~~~~e~~~~~-G~~Rv~t~ikid~R~dk~~~~~~Kv~~V~~ 95 (97)
T TIGR00106 40 MGTLIEGD--LDELFEAIKAIHEAVLEK-GSDRVYTSIKIDTRTDKHRTLRDKVKAVEE 95 (97)
T ss_pred CccEEecC--HHHHHHHHHHHHHHHHHc-CCCeEEEEEEEEecCCCCCCHHHHHHHHHh
Confidence 55567774 444555666655655544 777788888888888766666666665543
No 344
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=31.42 E-value=3.1e+02 Score=22.87 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEE-EECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 15 KAVAQTIRSEIAEEVRLLSEKYGKVPGLAVV-IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 15 k~la~~i~~~lk~~v~~l~~~~g~~P~Laii-~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+++-.-....+.++++ |..++.+-| .++-+....-|+..-+++.+++|......++... +.+++.+.+.+
T Consensus 14 ~~~~~~~~~~i~n~l~------g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~~~~Ie~~l~~ 84 (224)
T COG3340 14 EDVLEHFLPFIANFLQ------GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-PLAAIENKLMK 84 (224)
T ss_pred chhhhhhhHHHHHHhc------CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-CHHHHHHhhhh
Confidence 3444444455554432 335566554 3444555666999999999999999999998754 55666665544
No 345
>PRK05828 acyl carrier protein; Validated
Probab=31.40 E-value=1.6e+02 Score=20.40 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPD 97 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 97 (167)
+.+|..++......=+++||++..-++..-.|-.++++.|.+..+...
T Consensus 36 g~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~~~~~ 83 (84)
T PRK05828 36 KIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELKKQKG 83 (84)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 458999999999999999999887777777788999999988765543
No 346
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=31.38 E-value=2.4e+02 Score=21.50 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=37.8
Q ss_pred ceEEEEEECCC-cchHHHHHHHHHHHHHcC-ceeeeecCCCCCCHHHHHHHHHH-hcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVGGR-KDSQSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHE-LNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg~d-~as~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~I~~-lN~D~~V~GIlvq~ 105 (167)
-++++|....+ ..+....+.-.+.+++.| +...... ....+.++..+.+.+ +.+.++++||++.-
T Consensus 119 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 186 (264)
T cd01537 119 RRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQ-EGDWDAEKGYQAAEELLTAHPDPTAIFAAN 186 (264)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhc-cCCCCHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 35666654433 456666777788888888 3332222 223344555555555 44456799999863
No 347
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=31.22 E-value=3.1e+02 Score=22.78 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCC--CCCHHHHHHHHHHhcCCCCCcEEEEe-CCCCC--CCCHHHHHhc
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPE--QVSEAELISKVHELNVMPDVHGILVQ-LPLPK--HINEEKVLGE 119 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlvq-~PLP~--~id~~~i~~~ 119 (167)
|..=.-...|.++++|++......|. ..+++++.+..+++-+--++ .|+++ .|-.. .++.+.+.+.
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~-pv~lYn~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDL-PIILYNVPGRTGVDILPETVARL 151 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC-CEEEEECccccCCCCCHHHHHHH
Confidence 44444456788899999988886553 34689999999998776554 45555 45333 3555544443
No 348
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=31.18 E-value=2e+02 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHHHcCceeeeecCCC---CCCHHHHHHHHHHhcCC
Q 031035 63 ACAEVGIKSFDIDLPE---QVSEAELISKVHELNVM 95 (167)
Q Consensus 63 ~~~~~Gi~~~~~~l~~---~~~~~el~~~I~~lN~D 95 (167)
.|++.||.+..+.-.. ...++++++.+++.+-|
T Consensus 127 ~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~D 162 (280)
T TIGR00655 127 LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVD 162 (280)
T ss_pred HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCC
Confidence 5999999998765422 12245677788877655
No 349
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=31.09 E-value=2e+02 Score=26.09 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=51.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec----C--------CCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID----L--------PEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~----l--------~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
..++...|-||.+-.=+..=.|.++.+|+..-... + -..++.+.|.++++.+-+|-.+++|.+=+
T Consensus 231 ~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~~~~~~~~~~~ql~~l~~d~~~~~Ik~G~ 307 (504)
T PTZ00347 231 PTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQIQVVNEDFFAAQIDSVMSDFNISVVKLGL 307 (504)
T ss_pred CeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeEEeCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 35677789999999999999999999999873110 0 12356789999999999999999996653
No 350
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=31.02 E-value=98 Score=27.06 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=27.3
Q ss_pred ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 74 IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 74 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..+....+.+.+.+.++.+.+||+|++|++..+
T Consensus 287 lDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i~ 319 (386)
T TIGR01016 287 LDVGGGASAERVREALKLVLSDKSVKVVFINIF 319 (386)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 333455778999999999999999999998655
No 351
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=30.95 E-value=3.5e+02 Score=23.37 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCceEEEEEECCCc------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRK------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++|+.++|..|+.. ++..+ .....+++.|.++..+..-.+ +.+++.+.|+++.+. ..+=|++-
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~~~--~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~-g~DlIItT 226 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKFGP--VLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEA-GAELLILT 226 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhHHH--HHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcC-CCCEEEEe
Confidence 46899999998743 33343 466778999998877655433 567899999887643 35655554
No 352
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.90 E-value=2.4e+02 Score=22.26 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=31.8
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++--..-.+...+.|++.|.++..... .-+.++-.+.|+.+.. ..++||++.-
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~v~~~~~--~~~~~~~~~~i~~~~~-~~~Dgiii~~ 63 (282)
T cd06318 11 SPFFAALTEAAKAHAKALGYELISTDA--QGDLTKQIADVEDLLT-RGVNVLIINP 63 (282)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEcC--CCCHHHHHHHHHHHHH-cCCCEEEEec
Confidence 333344455667888888888766543 2233444455666543 4688988863
No 353
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=30.87 E-value=2.3e+02 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCceeeeecC--CCCCCHHHHHHHHHHhcCCC
Q 031035 57 VSMKRKACAEVGIKSFDIDL--PEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~~~I~~lN~D~ 96 (167)
.|....+++++|-+|....- |...|-+|+++.|++.-.||
T Consensus 13 ~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DP 54 (180)
T PF14097_consen 13 KRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDP 54 (180)
T ss_pred HHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCC
Confidence 34566778888888776654 55567788888888877776
No 354
>PF10995 DUF2819: Protein of unknown function (DUF2819); InterPro: IPR017745 This protein, called BcsE (bacterial cellulose synthase E) or YhjS, is required for cellulose biosynthesis in Salmonella enteritidis. Its role is this process across multiple bacterial species is implied by the partial phylogenetic profiling algorithm []. The protein is encoded in the vicinity of other cellulose biosynthesis genes and has been [] suggested to act as a protease.
Probab=30.84 E-value=3.4e+02 Score=23.70 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+.+...+-.|+++.|..-|++|--. ..+..|. =.+..=.+|++. .+|-+++...++..|+. |.|=+
T Consensus 120 ~~LA~~ih~LRr~~G~~LKIvVRE~---~~~LRy~--DE~LLL~~GaNl---Ivp~~~p~sR~lt~ies------lQGQ~ 185 (316)
T PF10995_consen 120 EQLARQIHQLRRQRGSALKIVVREM---GQCLRYQ--DERLLLACGANL---IVPFNAPLSRFLTLIES------LQGQV 185 (316)
T ss_pred HHHHHHHHHHHHhcCccceEEEEec---chhHHHH--HHHHHHhcCCCE---EeecCCCHHHHHHHHHH------HhCCe
Confidence 5667777788777787777766443 4577774 566777899985 44677889999999998 58999
Q ss_pred EeCCCCCCCCHHHHHhcCCCCCC
Q 031035 103 VQLPLPKHINEEKVLGEISLEKD 125 (167)
Q Consensus 103 vq~PLP~~id~~~i~~~I~P~KD 125 (167)
..+|+|+.+ +.++.+.-|.+.
T Consensus 186 f~R~vP~d~--~~lL~~~~p~~~ 206 (316)
T PF10995_consen 186 FTRPVPADI--EALLKALQPLQL 206 (316)
T ss_pred ecCCCCcCH--HHHHHhcCCcCc
Confidence 999999877 457777777664
No 355
>cd08511 PBP2_NikA_DppA_OppA_like_5 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is mos
Probab=30.76 E-value=1.8e+02 Score=25.48 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCC-ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 37 GKV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 37 g~~-P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
|.+ .+|.+.. .+++.+..-+...+..++++||++++..++. .++.+.+
T Consensus 315 G~~~~~l~i~~-~~~~~~~~~a~~i~~~l~~~Gi~v~i~~~~~----~~~~~~~ 363 (467)
T cd08511 315 GVPTVTFELTT-ANTPTGRQLAQVIQAMAAEAGFTVKLRPTEF----ATLLDRA 363 (467)
T ss_pred CCCCceEEEEe-cCCCchhHHHHHHHHHHHhcCcEeEEEEccH----HHHHHHH
Confidence 654 5676544 4456667778888999999999998876543 4454443
No 356
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=30.73 E-value=3.6e+02 Score=23.39 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 56 YVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
+.+...+..++.|+++..+ .+.++-+.+.+.+.++.+.+. +.+.|+-.-= -+-+|.-+....
T Consensus 42 ~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~d~IIaiGG-GS~~D~aK~ia~ 104 (374)
T cd08189 42 LLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYREN-GCDAILAVGG-GSVIDCAKAIAA 104 (374)
T ss_pred cHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCC-ccHHHHHHHHHH
Confidence 5666778888899988876 456677777777777776654 5677774210 123566555443
No 357
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.67 E-value=1.6e+02 Score=25.20 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.|.+..+ +.|+.-.+ +...++-.-....+...+.-+.-.++.-.+++| +..+++.++
T Consensus 30 aii~vg~d~as~~Yv~~k~k~~~---~~Gi~~~~--~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~ 104 (279)
T PRK14178 30 ATVIVGDDPASQMYVRMKHRACE---RVGIGSVG--IELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVI 104 (279)
T ss_pred EEEEeCCChhHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 44566666666665555443332 23765443 455555555556666666667776766667665 889888776
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|.- +++|||+
T Consensus 105 ~~I~p---~KDVDGl 116 (279)
T PRK14178 105 AAILP---EKDVDGF 116 (279)
T ss_pred hccCc---ccCcccC
Confidence 66554 7788987
No 358
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=30.56 E-value=3.1e+02 Score=22.88 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=37.6
Q ss_pred ceEEEEEE-CCCcchHHHHHHHHHHHHHcC-ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIV-GGRKDSQSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~v-g~d~as~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-.++++.. ..++-.....+...+.|++.| ..+.... + ..+.+.-.+.|+.+.. ..|+||++.
T Consensus 25 ~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~i~~l~~-~~vdgiIi~ 88 (330)
T PRK15395 25 TRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMND-S-QNDQSKQNDQIDVLLA-KGVKALAIN 88 (330)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEec-C-CCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 34555543 234555566677889999986 4544432 2 2244444567776654 469999996
No 359
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=30.50 E-value=95 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.--..++++|+++....++ +.++++.+.++.+... ++.|.-|-.|.-
T Consensus 18 ~hn~~~~~~g~~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K 64 (270)
T TIGR00507 18 IHNAFFKQLGLEGPYIAFL--VPPDDLEDALSGFFAL-GFKGANVTSPFK 64 (270)
T ss_pred HHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCH
Confidence 3445678999988887664 4567788888888655 799999999865
No 360
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=30.44 E-value=3.7e+02 Score=23.46 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=35.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 48 GGRKDSQSYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 48 g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
|..-....|.....+..++.|+++..+.=-+ +-+.+++.+.++.+.+ .+.|.|+-
T Consensus 30 ~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~~~D~IIa 85 (386)
T cd08191 30 DERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAAR-AGPDVIIG 85 (386)
T ss_pred CcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEE
Confidence 4333334677778888999999987664211 2356667777766655 56788774
No 361
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=30.43 E-value=2.3e+02 Score=21.16 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc----------CCCCCcEEEEeCCCCCCCCHHHHHhcCCC
Q 031035 60 KRKACAEVGIKSFDIDLPEQVSEAELISKVHELN----------VMPDVHGILVQLPLPKHINEEKVLGEISL 122 (167)
Q Consensus 60 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN----------~D~~V~GIlvq~PLP~~id~~~i~~~I~P 122 (167)
..+..++.||.++.++.|...|-++..+.+..-. .+.. .=+++..|=-.++|..++.+.+..
T Consensus 4 ~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~~~~~~-~~vlv~~~gd~~vn~~kl~~~lg~ 75 (156)
T cd04335 4 LLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKG-RLYLVTALHDKKVDLKALSKQLGA 75 (156)
T ss_pred HHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEEEcCCC-CEEEEEEcCCcccCHHHHHHHhCC
Confidence 4566788999999999988777777776442211 1111 247788888889999998888754
No 362
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=30.33 E-value=2.8e+02 Score=22.10 Aligned_cols=65 Identities=11% Similarity=-0.065 Sum_probs=36.9
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHc-CceeeeecCCCCCCHHHHHHHHHH-hcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHE-LNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~I~~-lN~D~~V~GIlvq~ 105 (167)
-++++|.-..+..+....+.-.+.+++. |++..... ..+.+.++-.+.+++ |+..+.++||+..-
T Consensus 132 ~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 198 (280)
T cd06303 132 ARYAMLYFSPGYISTARGDTFIDCVHARNNWTLTSEF-YTDATRQKAYQATSDILSNNPDVDFIYACS 198 (280)
T ss_pred cEEEEEECCCCcchhHHHHHHHHHHHhCCCceEEEee-cCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 3566664333333333444556778887 77654433 334454555555555 44557799999853
No 363
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=30.24 E-value=1.6e+02 Score=25.87 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECC-CcchHHHHHHHHHHHHHcCceeee
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFD 73 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~ 73 (167)
+..++.+++.+++.|..|.||++.--| +-+...=++...+.|.+.|+..-+
T Consensus 140 e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlll 191 (382)
T COG1103 140 EGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLL 191 (382)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEe
Confidence 344555667777768899999886543 345566677888999999997543
No 364
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.18 E-value=1.5e+02 Score=25.44 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=53.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.-. .+...++.......+...+.-+.-.++.-.+++| +..++..++
T Consensus 35 aiI~vg~d~as~~Yv~~k~k~a~---~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~ 109 (285)
T PRK14191 35 AVILVGKDPASQTYVNMKIKACE---RVGMDSD--LHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVL 109 (285)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 45566655566555544443322 2376444 4556666666667777777777766666666655 888888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+.+|||+=
T Consensus 110 ~~I---~p~KDVDGl~ 122 (285)
T PRK14191 110 EAI---DPNKDVDGFH 122 (285)
T ss_pred hcC---CccccccccC
Confidence 555 4578899974
No 365
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=30.14 E-value=1.1e+02 Score=26.13 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
+.|++.+.+.|.++..+ ..+|...-|=+|.+. ...+.-+|+-..+.+|-....-.+. .=|+|+++.|.+|+=-|
T Consensus 158 egi~~fVle~V~~aG~~-~CPP~~vGVGIGGt~-d~aa~LaK~Allr~ig~~n~d~~~a--~lE~elle~iN~lGIGp 231 (273)
T TIGR00722 158 EGVKKFVLETVKNAGGK-PCPPIIVGVGIGGSF-ETAAKLAKKALLRPIGERHPNPKIA--KLELELLEEINSLGIGP 231 (273)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCH-HHHHHHHHHHhhhhhccCCCChhHH--HHHHHHHHHHHhcCcCC
Confidence 56777887777777543 678989999999855 4455557777888887432111110 12678888888875444
No 366
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.14 E-value=1.5e+02 Score=26.31 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=69.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.....+.|.+.. ++.|+.- -.+...++-.-....+...+.-+.-.++...+++ |+..++++++
T Consensus 90 aiIlvGddpaS~~Yv~~k~K~a---~~~GI~~--~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~ 164 (345)
T PLN02897 90 AVVLVGQQRDSQTYVRNKIKAC---EETGIKS--LLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKIL 164 (345)
T ss_pred EEEEeCCChHHHHHHHHHHHHH---HhcCCEE--EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 3455555555555544443332 2237643 4566676665556667777777777777777775 5899988776
Q ss_pred HHHHHhcCCCCCcEE-------EEe---CCCCCCCCHHHHHhcCCCCC-CcccCCcccHH
Q 031035 87 SKVHELNVMPDVHGI-------LVQ---LPLPKHINEEKVLGEISLEK-DVDGFHPLNIG 135 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI-------lvq---~PLP~~id~~~i~~~I~P~K-DVDGl~~~NlG 135 (167)
+.|. -+++|||+ |.+ .|..-.--...+++.+.... ++.|-+-.=+|
T Consensus 165 ~~I~---p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~vvVIG 221 (345)
T PLN02897 165 NMVR---LEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIG 221 (345)
T ss_pred hccC---cccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence 6655 47889997 322 24222234566666665543 56666544333
No 367
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=30.06 E-value=1.9e+02 Score=25.99 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=65.2
Q ss_pred CCceEEEEEECCC-------------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGR-------------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d-------------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|+.+||..|+. .+|+.| .....+++.|+++..+..-.+ +.+++.+.|+++.+ +.|-||.-
T Consensus 192 ~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~--~L~a~l~~~G~~v~~~~~v~D-d~~~i~~~l~~a~~--~~DlIItT 266 (419)
T PRK14690 192 RPLRVAVLSTGDELVEPGALAEVGQIYDANRP--MLLALARRWGHAPVDLGRVGD-DRAALAARLDRAAA--EADVILTS 266 (419)
T ss_pred cCCEEEEEEccccccCCCCCCCCCeEEeCHHH--HHHHHHHHCCCEEEEEeeeCC-CHHHHHHHHHHhCc--cCCEEEEc
Confidence 4699999999964 145565 367779999999876654333 56788899988753 35656654
Q ss_pred CCCCC-CCCH-HHHHhcCCCCCCcccCC-----cccHHHhhccCCCCCC-CCchHHHHHHHhhhc
Q 031035 105 LPLPK-HINE-EKVLGEISLEKDVDGFH-----PLNIGKLAMKGRDPLF-LPCTPKAIILYSCLI 161 (167)
Q Consensus 105 ~PLP~-~id~-~~i~~~I~P~KDVDGl~-----~~NlG~l~~g~~~~~~-~PcTp~avi~lL~~~ 161 (167)
-=.-. ..|. ..+++.+- .-.+.|+. |.-+|.+ ++ .+-| +|..|.|++-.++.+
T Consensus 267 GG~S~G~~D~v~~~l~~~G-~~~~~~v~mkPGkp~~~~~~--~~-~pv~gLPGnP~aa~~~~~~~ 327 (419)
T PRK14690 267 GGASAGDEDHVSALLREAG-AMQSWRIALKPGRPLALGLW--QG-VPVFGLPGNPVAALVCTLVF 327 (419)
T ss_pred CCccCCCcchHHHHHHhcC-CEEEcceeecCCCceEEEEE--CC-eEEEECCCCHHHHHHHHHHH
Confidence 22211 1221 23333332 22333331 1122221 11 3334 699999887665543
No 368
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=29.99 E-value=2.7e+02 Score=22.58 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeecCCCCCC
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKY--GKVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDIDLPEQVS 81 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~ 81 (167)
+++++.-.+-|+++.++++++++.++++. ..+|+. .+..|.++ +..+|.....+.+--..+-...-.-...++
T Consensus 116 lg~~~g~~~~A~~li~~~~~~l~~i~~~~~~~~~~~v-~~~~~~~~~~~~g~~s~~~~~i~~aG~~N~~~~~~~~~~~is 194 (260)
T PRK03379 116 LAPWSPQPEKAEQAAQSLLQQYAALKAQYADKPKKRV-FLQFGTNPLFTSGKHSIQSQVLSLCGGENIFADSRVPWPQVS 194 (260)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeE-EEEecCCCCeecCCCchHHHHHHHcCCEecCCCCCCCCCccC
Confidence 46666555667777777777777765532 224443 34445432 345666665555443322211111123466
Q ss_pred HHHHHHH
Q 031035 82 EAELISK 88 (167)
Q Consensus 82 ~~el~~~ 88 (167)
.|.+++.
T Consensus 195 ~E~l~~~ 201 (260)
T PRK03379 195 REQVLAR 201 (260)
T ss_pred HHHHHHh
Confidence 6665554
No 369
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=29.90 E-value=1.9e+02 Score=22.42 Aligned_cols=45 Identities=16% Similarity=0.007 Sum_probs=34.0
Q ss_pred eEEEEEECCCc-chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHH
Q 031035 41 GLAVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 41 ~Laii~vg~d~-as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (167)
..|+|++++.- --..|...-.+.|++.|+.+-.++|.--.+.++.
T Consensus 24 ~fviikateG~~~~D~~f~~n~~~a~~aGl~vG~Yhf~~~~~~~~a 69 (177)
T cd06523 24 DLVIIRVQYGSNYVDLKYKNNIKEFKKRGIPFGVYAFARGTSTADA 69 (177)
T ss_pred CEEEEEEeCCCcccCHHHHHHHHHHHHcCCCeEEEEEeccCCHHHH
Confidence 58999999743 2455667888999999999999999755444333
No 370
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=29.88 E-value=1.8e+02 Score=22.53 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCc--eEEEEEECCCcchH-HHHHHHHHHHHHc----CceeeeecCCCCCCHHHH
Q 031035 13 DGKAVAQTIRSEIAEEVRLLSEKYGKVP--GLAVVIVGGRKDSQ-SYVSMKRKACAEV----GIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 13 dGk~la~~i~~~lk~~v~~l~~~~g~~P--~Laii~vg~d~as~-~Y~~~k~k~~~~~----Gi~~~~~~l~~~~~~~el 85 (167)
.|..++..+...+.......... ..+| .+.+|.-.-.+.+. .-.+..++.++++ ++.+..+.+-.+....++
T Consensus 80 G~T~l~~~l~~a~~~~~~~~~~~-~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~ 158 (199)
T cd01457 80 GGTNLAAVLQDALNNYFQRKENG-ATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPAATAF 158 (199)
T ss_pred CcCcHHHHHHHHHHHHHHHHhhc-cCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHHHHHH
Confidence 34667777776665555443221 2344 44444333333333 2234445555543 566666666554444455
Q ss_pred HHHHH
Q 031035 86 ISKVH 90 (167)
Q Consensus 86 ~~~I~ 90 (167)
++.+.
T Consensus 159 L~~ld 163 (199)
T cd01457 159 LKALD 163 (199)
T ss_pred HHHHh
Confidence 55554
No 371
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.86 E-value=1.5e+02 Score=25.42 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=52.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-. ++...++-.-....+...+.-+.-.++.-.+++| +..++.+++
T Consensus 35 aii~vgdd~as~~Yv~~k~k~a~---~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~ 109 (281)
T PRK14183 35 AVILVGDDPASHTYVKMKAKACD---RVGIYSI--THEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKIL 109 (281)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHH
Confidence 44555655565555554443332 2376443 4455555555556677777777766666666665 888888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.|.- +.+|||+=
T Consensus 110 ~~I~p---~KDVDGl~ 122 (281)
T PRK14183 110 EAIDP---KKDVDGFH 122 (281)
T ss_pred hccCc---hhcccccC
Confidence 66544 78889873
No 372
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.86 E-value=1.5e+02 Score=25.41 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=66.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.-.+ +...++-......+...+.-+.-.++...+++| +..++.+++
T Consensus 35 aii~vg~d~as~~Yv~~k~k~a~---~~Gi~~~~--~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~ 109 (284)
T PRK14170 35 AVVLVGDNQASRTYVRNKQKRTE---EAGMKSVL--IELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVI 109 (284)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHH
Confidence 44566655566555554443332 23765443 555666555566677777777776766667665 888888766
Q ss_pred HHHHHhcCCCCCcEEEEe------CC----CCCCCCHHHHHhcCCCCC-CcccCCcc
Q 031035 87 SKVHELNVMPDVHGILVQ------LP----LPKHINEEKVLGEISLEK-DVDGFHPL 132 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq------~P----LP~~id~~~i~~~I~P~K-DVDGl~~~ 132 (167)
+.| +-+.+|||+=-. +. +| --...+++.+.... |+.|-+-.
T Consensus 110 ~~I---~p~KDVDGl~p~N~g~l~~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vv 161 (284)
T PRK14170 110 DTI---SYDKDVDGFHPVNVGNLFIGKDSFVP--CTPAGIIELIKSTGTQIEGKRAV 161 (284)
T ss_pred hcc---CcccCcccCChhhhhHHhCCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEE
Confidence 555 447888887421 11 22 22566666666544 66665443
No 373
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.85 E-value=1.3e+02 Score=21.32 Aligned_cols=39 Identities=26% Similarity=0.131 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHhcCC
Q 031035 57 VSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHELNVM 95 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D 95 (167)
.+...+..++.||+++.+.+-+ ..|.+++.+.++.+...
T Consensus 9 ~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~ 48 (110)
T PF03960_consen 9 CRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNG 48 (110)
T ss_dssp HHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhccc
Confidence 4566788889999999998854 36778888888887643
No 374
>PRK05350 acyl carrier protein; Provisional
Probab=29.66 E-value=1.3e+02 Score=20.12 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN 93 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 93 (167)
..+|..++......=+++||++..-.+..-.|-.++.+.|.++-
T Consensus 37 g~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 37 DLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 56899999999999999999988888877788888888888753
No 375
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=29.65 E-value=3.4e+02 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCceeeeec---CCCCC----CHHHHHHHHHHhcC
Q 031035 54 QSYVSMKRKACAEVGIKSFDID---LPEQV----SEAELISKVHELNV 94 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~---l~~~~----~~~el~~~I~~lN~ 94 (167)
...+++..+.+++.|++-..+. +|... ..+.+...+++|.+
T Consensus 94 ~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~ 141 (318)
T cd02876 94 EKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGE 141 (318)
T ss_pred HHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHH
Confidence 5588899999999966655554 44321 23455556655543
No 376
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.61 E-value=49 Score=20.42 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=29.0
Q ss_pred cCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|+++.-+.+.+.| .+.+-|-|-+-|++..+.+|-
T Consensus 10 gvS~~TVSr~ln~--~~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 10 GVSKSTVSRVLNG--PPRVSEETRERILEAAEELGY 43 (46)
T ss_dssp TSSHHHHHHHHTT--CSSSTHHHHHHHHHHHHHHTB
T ss_pred CcCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHCC
Confidence 6777888888887 577889999999999999874
No 377
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=29.60 E-value=3.4e+02 Score=22.82 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ 79 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~ 79 (167)
++-.+.++.+.++. +|..+.-|+.|-++..+-..+..+++.||.+..+.+...
T Consensus 139 ~~~~~~i~~la~~~----gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 139 EQKEKAIQQLSQSY----GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred HHHHHHHHHHHhce----eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 34455566665443 688888999999999999999999999999999976543
No 378
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.50 E-value=3.8e+02 Score=23.30 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 54 QSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..|.+...+..++.|+++..+. ..++.+.+++.+.++.+.+ .+.|.|+-
T Consensus 42 ~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIa 91 (377)
T cd08188 42 AGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLE-NGCDVIIA 91 (377)
T ss_pred CccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEE
Confidence 3477778888889999888764 5566777888887776655 35778775
No 379
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=29.30 E-value=1.4e+02 Score=21.29 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.+++++++.+.+ |+.|+.+|+=
T Consensus 73 ~ls~~e~i~~l~~-------~p~LikRPii 95 (115)
T cd03032 73 ELSLSELIRLISE-------HPSLLRRPII 95 (115)
T ss_pred cCCHHHHHHHHHh-------ChhheeCCEE
Confidence 3455555555555 4566666663
No 380
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=29.28 E-value=2.4e+02 Score=22.49 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=38.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcc-CC-CceEEEEEECC-Cc----chHHHHHHHHHHHHHcCce
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKY-GK-VPGLAVVIVGG-RK----DSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~-g~-~P~Laii~vg~-d~----as~~Y~~~k~k~~~~~Gi~ 70 (167)
++.+++..+-|+++.+++++++++++++. +. .|+.+++.... +. ++..|... .++.+|..
T Consensus 108 lg~~~g~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~i~~aG~~ 174 (256)
T cd01146 108 IAKALGKEEEAEKLLAEYDQRLAELRQKLPDKGPKPVSVVRFSDAGSIRLYGPNSFAGS---VLEDLGLQ 174 (256)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhccCCcEEEEEEecCCeEEEecCCchHHH---HHHHhCCC
Confidence 46778878888888888888888887654 22 45666665543 22 34566544 55666654
No 381
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.19 E-value=3.8e+02 Score=23.23 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=56.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCc-chHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELIS 87 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~-as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~ 87 (167)
+++-|+-..+++-+.+ ..+ | + + ++|..|... ....+.....+..++.|+++..+ .+.++.+.+.+.+
T Consensus 6 ~i~fG~g~l~~l~~~~----~~~----g-~-r-~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~ 74 (380)
T cd08185 6 KIVFGAGKLNELGEEA----LKP----G-K-K-ALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVME 74 (380)
T ss_pred eEEECcCHHHHHHHHH----Hhc----C-C-e-EEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHH
Confidence 4566766555444433 222 4 2 2 233334333 24567777788889999998876 4666778787887
Q ss_pred HHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
.++.+.+. ++|.|+=--= -+-+|.-+....
T Consensus 75 ~~~~~~~~-~~D~IiavGG-GS~iD~aK~ia~ 104 (380)
T cd08185 75 GAALAREE-GCDFVVGLGG-GSSMDTAKAIAF 104 (380)
T ss_pred HHHHHHHc-CCCEEEEeCC-ccHHHHHHHHHH
Confidence 77776653 6788874210 123566555444
No 382
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.07 E-value=4e+02 Score=23.44 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
+++.+.+.++.++.+.+.++-.+++.+=-+|.-.++...+.++.++..+.++.+.
T Consensus 234 ~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~N 288 (345)
T PRK14466 234 KEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFH 288 (345)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecC
Confidence 3444555555555578899999999877788888899999999999888888885
No 383
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=28.99 E-value=1.8e+02 Score=19.26 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=16.8
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
..+.+|-|+-|.....| .+..++.+.....+.+.
T Consensus 34 ~~v~~v~Vs~d~~~~~~----~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 34 DDVEFVFVSLDEDEEEW----KKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TTEEEEEEE-SSSHHHH----HHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEEeCCCHHHH----HHHHHhcCCCceEEeeC
Confidence 45666666666554444 33334445555555444
No 384
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=28.89 E-value=2.8e+02 Score=23.81 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=35.2
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeecCCC---CCCHHHHHHHHHHhcCC
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE---QVSEAELISKVHELNVM 95 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~---~~~~~el~~~I~~lN~D 95 (167)
|..+.+-. ..|.+...+..++.|+++..+.++. +-+.+.+.+.++.+.+.
T Consensus 29 ivtd~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~ 81 (345)
T cd08195 29 IVTDENVA-PLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEA 81 (345)
T ss_pred EEECCchH-HHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHc
Confidence 33454444 3788888889999999888777764 55667777777776553
No 385
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.81 E-value=1.7e+02 Score=25.13 Aligned_cols=115 Identities=10% Similarity=0.169 Sum_probs=64.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-.+ +...++-......+...+.-+.-.++...+++| +..++..++
T Consensus 33 aii~vg~d~as~~Yv~~k~k~~---~~~Gi~~~~--~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~ 107 (287)
T PRK14173 33 RVVRLGEDPASVSYVRLKDRQA---KALGLRSQV--EVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVL 107 (287)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4456666556655554444332 223765544 444555444445556666666666666666665 888888766
Q ss_pred HHHHHhcCCCCCcEEEEe------C--C--CCCCCCHHHHHhcCCCCC-CcccCCccc
Q 031035 87 SKVHELNVMPDVHGILVQ------L--P--LPKHINEEKVLGEISLEK-DVDGFHPLN 133 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq------~--P--LP~~id~~~i~~~I~P~K-DVDGl~~~N 133 (167)
+.|. -+.+|||+=-. . | +| --...+++.+.... |++|-|-.=
T Consensus 108 ~~I~---p~KDVDGl~~~N~g~l~~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvV 160 (287)
T PRK14173 108 EAID---PLKDVDGFHPLNVGRLWMGGEALEP--CTPAGVVRLLKHYGIPLAGKEVVV 160 (287)
T ss_pred hccC---ccccccccChhhhHHHhcCCCCCCC--CCHHHHHHHHHHcCCCCCCCEEEE
Confidence 6554 47788887421 1 1 12 23556666665543 566665433
No 386
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.80 E-value=1.8e+02 Score=25.01 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=51.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-.+ +...++.......+...+.-+.-.++...+++| +..++.+++
T Consensus 37 aii~vg~d~as~~Yv~~k~k~a~---~~Gi~~~~--~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~ 111 (285)
T PRK10792 37 AVVLVGSDPASQVYVASKRKACE---EVGFVSRS--YDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVL 111 (285)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 44556655566555554443332 23765444 444545444556666666666766666666665 888888665
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.| +-+.+|||+
T Consensus 112 ~~I---~p~KDVDGl 123 (285)
T PRK10792 112 ERI---HPDKDVDGF 123 (285)
T ss_pred hcc---CcccccCcc
Confidence 555 558889998
No 387
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=28.66 E-value=3.9e+02 Score=23.15 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 53 SQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+..|.+...+..++.|+++..+. ..++.+.+.+.+.++.+.+. +++.|+=
T Consensus 39 ~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIa 89 (376)
T cd08193 39 KAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAA-GADGVIG 89 (376)
T ss_pred hCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CCCEEEE
Confidence 33466667788899999887653 45667778788887777653 5777775
No 388
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=28.44 E-value=3.1e+02 Score=23.40 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=36.7
Q ss_pred EEECCCcchHHHHHHHHHHHHHcCceeeeec--CCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDID--LPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~--l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+.+.+......|.....+..++.|+++..+. ..++-+.+.+.+.++.+.+ +.+.|+
T Consensus 28 livtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~II 85 (332)
T cd08549 28 MIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLL 85 (332)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEE
Confidence 3345555566677777788888898776542 3344467778887777766 556555
No 389
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=28.40 E-value=3e+02 Score=24.47 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=44.9
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC---CCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.|.|+++..- +..+..|...|...+.+.||.+..+....- ....-+.+..-++|.- .-|+.-....|
T Consensus 120 ~~~lv~~ilp-~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~K--lGG~n~~v~~~ 189 (426)
T cd04657 120 GPQLVLVILP-KKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLK--LGGINHSLEPD 189 (426)
T ss_pred CCCEEEEEEc-CCCcchHHHHHHHHhhcCCcccEEEcccccccccchHHHHHHHHHHHHh--cCCEeeecccc
Confidence 5777766664 334889998888888899999988865432 2345566667777754 45665555443
No 390
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.35 E-value=1.7e+02 Score=25.04 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=51.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-. .+...++..-....+...+.-+.-.++.-.+++| +..++..++
T Consensus 37 aii~vg~d~as~~Yv~~k~k~~---~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~ 111 (284)
T PRK14177 37 ATILVGNNPASETYVSMKVKAC---HKVGMGSE--MIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAF 111 (284)
T ss_pred EEEEeCCChhHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 4455565555555554443322 22376444 4555555555556666666666666666666664 788887766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+. ++-+.+|||+=
T Consensus 112 ~~---I~p~KDVDGl~ 124 (284)
T PRK14177 112 DR---IALEKDVDGVT 124 (284)
T ss_pred hc---cCcccccccCC
Confidence 55 45588888864
No 391
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=28.28 E-value=4.4e+02 Score=23.60 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCceeee---ecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCCCC
Q 031035 57 VSMKRKACAEVGIKSFD---IDLPEQVSEAELISKVHELNVM-PDVHGILVQLPLPKH 110 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~---~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP~~ 110 (167)
+....+.|++.||.+.. +-+|.+ |.+++.+.++-+.+- ++.-.+-+..|+|..
T Consensus 325 ~~~~i~~~~~~Gi~v~~~~IiGlPge-t~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 325 ARRFTRDCHKLGIKVHGTFILGLPGE-TRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred HHHHHHHHHHCCCeEEEEEEEeCCCC-CHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 33567889999998763 345654 778888877766543 333345567799864
No 392
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=28.24 E-value=3.5e+02 Score=23.84 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=41.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcC-cee-eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVG-IKS-FDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~G-i~~-~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|...++ -...-++.-.+.+++.| +.+ ....++.+.+..++...+.++.+..+.+.|++...
T Consensus 174 ~Vaii~~~~~-yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~~ 240 (463)
T cd06376 174 YVSTLASEGN-YGESGVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFAN 240 (463)
T ss_pred EEEEEEeCCh-HHHHHHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEecC
Confidence 5666665444 44455566667778875 433 22234555567888889988866566788887554
No 393
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.22 E-value=1.6e+02 Score=25.51 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=68.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.|.+.. ++.|+. --.+...++-.-....+...+.-+.-.++.-.+++| +..++.+++
T Consensus 37 aiI~vg~d~as~~Yv~~k~k~a---~~~Gi~--~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~ 111 (301)
T PRK14194 37 AVILVGNDPASQVYVRNKILRA---EEAGIR--SLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVL 111 (301)
T ss_pred EEEEeCCChhHHHHHHHHHHHH---HHcCCE--EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHH
Confidence 4455565555555544443322 223764 344556666666667777777777777777777765 888888766
Q ss_pred HHHHHhcCCCCCcEEEEe--------CC--CCCCCCHHHHHhcCCCCC-CcccCCcccHHH
Q 031035 87 SKVHELNVMPDVHGILVQ--------LP--LPKHINEEKVLGEISLEK-DVDGFHPLNIGK 136 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~P--LP~~id~~~i~~~I~P~K-DVDGl~~~NlG~ 136 (167)
+.|. -+.+|||+=-. .| +|. -...+++.+.... |+.|-|-.=+|+
T Consensus 112 ~~I~---p~KDVDGl~~~N~g~l~~~~~~~~Pc--Tp~aii~lL~~~~i~l~Gk~V~vIG~ 167 (301)
T PRK14194 112 QAIN---PLKDVDGFHSENVGGLSQGRDVLTPC--TPSGCLRLLEDTCGDLTGKHAVVIGR 167 (301)
T ss_pred hccC---chhccCccChhhhhHHhcCCCCCCCC--cHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 6554 47788887411 11 222 2455666555433 677765544444
No 394
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=28.18 E-value=1.2e+02 Score=28.53 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=37.0
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.+|+..-+.|+...+.......|++.||.+.. +.+.+.+++++.|++++-|
T Consensus 27 ~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~---~~~~~~~~~~~~l~~~~~D 77 (660)
T PRK08125 27 AAVFTHTDNPGENHFFGSVARLAAELGIPVYA---PEDVNHPLWVERIRELAPD 77 (660)
T ss_pred EEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEe---eCCCCcHHHHHHHHhcCCC
Confidence 44555566666666666778899999998753 4556667888889888666
No 395
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=28.15 E-value=1.8e+02 Score=20.77 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=32.0
Q ss_pred EEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 44 ii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
++++|+--.-++++ ....|+.+|-.+..+.++.+++++++.-...
T Consensus 2 vlL~G~~G~GKt~l--~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~ 46 (139)
T PF07728_consen 2 VLLVGPPGTGKTTL--ARELAALLGRPVIRINCSSDTTEEDLIGSYD 46 (139)
T ss_dssp EEEEESSSSSHHHH--HHHHHHHHTCEEEEEE-TTTSTHHHHHCEEE
T ss_pred EEEECCCCCCHHHH--HHHHHHHhhcceEEEEeccccccccceeeee
Confidence 56677666555554 5566777799999999999999888775444
No 396
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=28.14 E-value=81 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.+-.++.+.++.+++|++|.+|++..--|
T Consensus 17 ~~~~~l~~~l~~a~~d~~i~~ivl~~~s~ 45 (208)
T cd07023 17 IGADSLIEQLRKAREDDSVKAVVLRINSP 45 (208)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 46789999999999999999999987544
No 397
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=27.89 E-value=2.5e+02 Score=24.34 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC---CCC-------------CCHHHHHHH
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL---PEQ-------------VSEAELISK 88 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l---~~~-------------~~~~el~~~ 88 (167)
+...+.+| ++.| .++|..| +-|..=+.....+-|..|+.+.-|.. |.- .+.+|+-+.
T Consensus 132 iSaDL~eL----~rtp-v~VV~aG--~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~ 204 (293)
T PF04227_consen 132 ISADLTEL----ARTP-VAVVCAG--AKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARI 204 (293)
T ss_dssp B-HHHHHH----TTS--EEEEESB--B-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHH
T ss_pred hhhHHHHH----hcCC-ceEEEcc--CcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHH
Confidence 44455666 6677 5666666 45666677888899999998877653 111 345666666
Q ss_pred HHHhcCCCCCcEEEEeCCCCC--CCCHHHH
Q 031035 89 VHELNVMPDVHGILVQLPLPK--HINEEKV 116 (167)
Q Consensus 89 I~~lN~D~~V~GIlvq~PLP~--~id~~~i 116 (167)
+..-.+-.-=.|+++--|+|+ .++.+.+
T Consensus 205 ~~~~~~lgl~~g~lvanPiP~e~~~~~~~i 234 (293)
T PF04227_consen 205 IRAHWQLGLPSGVLVANPIPEEDAIDGEEI 234 (293)
T ss_dssp HHHHHHTT--SEEEEE----GGG---HHHH
T ss_pred HHHHHHhCCCCeEEEEccCChHhcCCHHHH
Confidence 644333333469999999998 5666553
No 398
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.87 E-value=3.7e+02 Score=22.70 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCC---------cchHHHHHHHHHHHHHcCceeeeecCCCCCC-------HHHHH
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGR---------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-------EAELI 86 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d---------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-------~~el~ 86 (167)
++++++++.++++ |.+.-| .+|.. .....++++..+..++.|++-..+.+..... .+.+.
T Consensus 60 ~~~~~~i~~~q~~-G~KVll---SiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~ 135 (312)
T cd02871 60 AEFKADIKALQAK-GKKVLI---SIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLI 135 (312)
T ss_pred HHHHHHHHHHHHC-CCEEEE---EEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHH
Confidence 4667778888766 654333 33432 2346788889999999988876666533222 26788
Q ss_pred HHHHHhcCC
Q 031035 87 SKVHELNVM 95 (167)
Q Consensus 87 ~~I~~lN~D 95 (167)
..+++|.+.
T Consensus 136 ~~lk~lr~~ 144 (312)
T cd02871 136 SALKQLKDH 144 (312)
T ss_pred HHHHHHHHH
Confidence 888887654
No 399
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=27.84 E-value=1.4e+02 Score=21.61 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCc-EEEEeCCCCCCCCHHHH
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVH-GILVQLPLPKHINEEKV 116 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~-GIlvq~PLP~~id~~~i 116 (167)
++...+.+++.|+.+...=++.. +-.+..+.+++|..+..-. +|.|-=.+....+.+.+
T Consensus 13 L~~l~~~a~~~~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~~y~I~~V 72 (113)
T PF09673_consen 13 LRNLLKQAERAGVVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLFRQYNITAV 72 (113)
T ss_pred HHHHHHHHHhCCcEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHHhhCCceEc
Confidence 56677888888999999999988 8888999999998776554 77776555555555444
No 400
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.83 E-value=2e+02 Score=23.98 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=10.0
Q ss_pred HHHHHHHHcCceeeeecCC
Q 031035 59 MKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~ 77 (167)
.|.++|+++||.+..++=|
T Consensus 206 eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 206 AKLEAARELGIPVVMIARP 224 (248)
T ss_pred HHHHHHHHcCCeEEEEeCC
Confidence 3455555555555555443
No 401
>PF13362 Toprim_3: Toprim domain
Probab=27.79 E-value=2e+02 Score=19.55 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred ceEEEEEECCCcc--hHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHH
Q 031035 40 PGLAVVIVGGRKD--SQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELISKVHE 91 (167)
Q Consensus 40 P~Laii~vg~d~a--s~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~ 91 (167)
+++ +|...+|.+ ....++...+.+++.|+.+..+.. ++. .++-+.+++
T Consensus 42 ~~v-ii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~~g---~D~ND~l~~ 92 (96)
T PF13362_consen 42 RRV-IIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGPEG---KDWNDLLQA 92 (96)
T ss_pred CeE-EEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCCCC---chHHHHHHh
Confidence 344 666777777 788888889999999999998876 332 255555544
No 402
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.77 E-value=3.2e+02 Score=23.38 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=52.9
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+... .+...++.....-.+...+.-+.-.++...+++| +..++.+++
T Consensus 35 a~I~vg~d~as~~Yv~~k~k~~---~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~ 109 (282)
T PRK14180 35 VAIIVGNDPASKTYVASKEKAC---AQVGIDSQ--VITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVI 109 (282)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 4455565555555544433322 22376544 4555666666667777777777776666666665 888888766
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.| +-..+|||+
T Consensus 110 ~~I---~p~KDVDGl 121 (282)
T PRK14180 110 YSI---KPEKDVDGF 121 (282)
T ss_pred hhc---Ccccccccc
Confidence 655 457888887
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.59 E-value=3.7e+02 Score=22.60 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=10.0
Q ss_pred CCCCchHHHHHHHh
Q 031035 145 LFLPCTPKAIILYS 158 (167)
Q Consensus 145 ~~~PcTp~avi~lL 158 (167)
.+.++++....++|
T Consensus 253 di~~a~~~~l~~~~ 266 (270)
T PRK06731 253 NIHIATAEHLAKQM 266 (270)
T ss_pred chhhCCHHHHHHHH
Confidence 56778887777664
No 404
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=27.58 E-value=1.2e+02 Score=20.24 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 62 KACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 62 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
...+..|.+.+.+.+++.+|-+++++.+..
T Consensus 11 ~~re~~g~~~~~~~~~~~~tv~~L~~~l~~ 40 (82)
T PLN02799 11 RARELTGVSDMTLELPAGSTTADCLAELVA 40 (82)
T ss_pred HHHHHhCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345677888899999999899999988854
No 405
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=27.57 E-value=1.1e+02 Score=26.70 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHcCcee-eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 62 KACAEVGIKS-FDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 62 k~~~~~Gi~~-~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..+++.|... -.+.+....+.+.+.+.++.+.+|++|++|++..+
T Consensus 274 D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~vlv~~~ 319 (388)
T PRK00696 274 DIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPNVKAILVNIF 319 (388)
T ss_pred HHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 3444555422 23334555788999999999999999999998644
No 406
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.51 E-value=1.7e+02 Score=26.86 Aligned_cols=141 Identities=11% Similarity=0.117 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHHHHHHHHH-------HhccCCCce-EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHH
Q 031035 13 DGKAVAQTIRSEIAEEVRLL-------SEKYGKVPG-LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAE 84 (167)
Q Consensus 13 dGk~la~~i~~~lk~~v~~l-------~~~~g~~P~-Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~e 84 (167)
+|---.....|++|++++.- |+..-.-|+ .+||-.-..++=.--.+...+++-.+-|-+....+-.+...++
T Consensus 101 ~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~e 180 (440)
T COG1570 101 AGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEE 180 (440)
T ss_pred CChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHH
Confidence 34434444567888877641 111122344 4554433333333334444444444444444444445566799
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCC-----CCCHHHHHhcCCCCC--CcccC---CcccHHHhhccCCCCCCCCchHHHH
Q 031035 85 LISKVHELNVMPDVHGILVQLPLPK-----HINEEKVLGEISLEK--DVDGF---HPLNIGKLAMKGRDPLFLPCTPKAI 154 (167)
Q Consensus 85 l~~~I~~lN~D~~V~GIlvq~PLP~-----~id~~~i~~~I~P~K--DVDGl---~~~NlG~l~~g~~~~~~~PcTp~av 154 (167)
+.+.|+.+|+...+|-|||-+==-+ .+|++.+..+|.-.+ =|-|+ +..-+.-+. ..+.-.||.|.
T Consensus 181 Iv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGHEtD~tL~DfV-----AD~RApTPTaA 255 (440)
T COG1570 181 IVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGHETDFTLADFV-----ADLRAPTPTAA 255 (440)
T ss_pred HHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeecccCCCccHHHhh-----hhccCCCchHH
Confidence 9999999999999999999764111 256666666553322 01111 001111111 23556788888
Q ss_pred HHHh
Q 031035 155 ILYS 158 (167)
Q Consensus 155 i~lL 158 (167)
.+++
T Consensus 256 AE~~ 259 (440)
T COG1570 256 AELV 259 (440)
T ss_pred HHHh
Confidence 8875
No 407
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=27.49 E-value=2.7e+02 Score=23.35 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHHHHHHHcCceeeeecCCCC---CCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.--...+++|+++....+.-. ++.+++.+.++.+.. .++.|.-|-.|.-
T Consensus 23 ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K 74 (284)
T PRK12549 23 MHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCK 74 (284)
T ss_pred HHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCH
Confidence 445678999999888777532 346788888888754 4799999999975
No 408
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=27.35 E-value=1.2e+02 Score=25.25 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=32.0
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
+.++...+++....=+...++.++++||.++...++.
T Consensus 296 ~~~~~~~~~~~~~~~a~~l~~~l~~~Gi~v~i~~~~~ 332 (374)
T PF00496_consen 296 LIILYTSDDPIWKAIAEALQEQLKKIGIKVEIKPVDF 332 (374)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEESH
T ss_pred ccccccccccchHHHHHHHHHHHhhcceeEEEEEeCh
Confidence 7777788888888888899999999999999998743
No 409
>KOG4115 consensus Dynein-associated protein Roadblock [Cell cycle control, cell division, chromosome partitioning; Cell motility]
Probab=27.25 E-value=75 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 83 AELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++.+.++++-.-+.|.||||.-+
T Consensus 3 ~~vEe~~~R~qs~~gV~giiv~d~ 26 (97)
T KOG4115|consen 3 AEVEETLKRLQSYKGVTGIIVVDN 26 (97)
T ss_pred HHHHHHHHHHhccCCceeEEEECC
Confidence 578888889989999999999753
No 410
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.15 E-value=1.4e+02 Score=25.75 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=52.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-. .+...++-.-....+...+.-+.-.++...+++| +.+++.+++
T Consensus 36 aiI~vg~d~as~~Yv~~k~k~a---~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~ 110 (288)
T PRK14171 36 AIVLVGDNPASIIYVKNKIKNA---HKIGIDTL--LVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKIL 110 (288)
T ss_pred EEEEeCCCccHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4556666556655555443332 22376544 4555555555556666666666666666666665 888888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+++|||+=
T Consensus 111 ~~I---~p~KDVDGl~ 123 (288)
T PRK14171 111 SAV---SPSKDIDGFH 123 (288)
T ss_pred hcc---CcccccccCC
Confidence 655 4478899873
No 411
>PRK10026 arsenate reductase; Provisional
Probab=26.96 E-value=2.9e+02 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.+.+++++.+.+ |+.|+++|+=
T Consensus 75 ~ls~~e~l~ll~~-------~P~LIKRPIi 97 (141)
T PRK10026 75 KFTDDQLIDFMLQ-------HPILINRPIV 97 (141)
T ss_pred CCCHHHHHHHHHh-------CccceeCcEE
Confidence 4577888888887 7889999984
No 412
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.92 E-value=2e+02 Score=19.13 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=13.2
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.++. .+..++++.|++.+ +++.-|++
T Consensus 52 ~~~~-~~~~~~~~~i~~~~--~~~~ii~~ 77 (112)
T PF00072_consen 52 ELPD-GDGLELLEQIRQIN--PSIPIIVV 77 (112)
T ss_dssp SSSS-SBHHHHHHHHHHHT--TTSEEEEE
T ss_pred eecc-cccccccccccccc--ccccEEEe
Confidence 3443 45556666666655 44444444
No 413
>PRK10949 protease 4; Provisional
Probab=26.81 E-value=1.2e+02 Score=28.69 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC---HHHHHhcCCCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLPLPKHIN---EEKVLGEISLE 123 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id---~~~i~~~I~P~ 123 (167)
..+..++++.|++..+|++|.||++..-=|.+-. .++|.++|.--
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~f 141 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREF 141 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 4677899999999999999999999998775432 25676766443
No 414
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.50 E-value=3.6e+02 Score=22.10 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHH---HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcE
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQS---YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHG 100 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~---Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~G 100 (167)
++.++++.+++. |.+ .+.++..|.++.... |++...+..++.|+.... .. ...+ +|.++.+++.. +++
T Consensus 66 ei~~~~~~~~~~-g~~-~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~-~~-g~~~-~e~l~~Lk~aG----~~~ 136 (296)
T TIGR00433 66 EVLEEARKAKAA-GAT-RFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCA-TL-GLLD-PEQAKRLKDAG----LDY 136 (296)
T ss_pred HHHHHHHHHHHC-CCC-EEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEe-cC-CCCC-HHHHHHHHHcC----CCE
Confidence 333344444433 543 455566666665444 777777777778886532 22 2333 56666666543 445
Q ss_pred EEEe
Q 031035 101 ILVQ 104 (167)
Q Consensus 101 Ilvq 104 (167)
+.+-
T Consensus 137 v~i~ 140 (296)
T TIGR00433 137 YNHN 140 (296)
T ss_pred EEEc
Confidence 5554
No 415
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=26.44 E-value=1.5e+02 Score=20.84 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=41.2
Q ss_pred EEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcCC
Q 031035 42 LAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVM 95 (167)
Q Consensus 42 Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D 95 (167)
+.++=.|. +++-..|+...++..++-|+++++-.+.-.+ +-+++.+.+++..+-
T Consensus 3 i~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~ 59 (92)
T PF01910_consen 3 ISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEAHEA 59 (92)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHHHHH
Confidence 56677776 6778889999999999999999988663221 258888888876543
No 416
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.39 E-value=2.8e+02 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 61 RKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
.+.+++.|++ ..|+..++-+++++.|++.-+
T Consensus 105 ~~~l~~~G~~---~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 105 EKKFKEMGFD---RVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHHcCCC---EEECcCCCHHHHHHHHHHHhc
Confidence 4566778963 456778888999999887644
No 417
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.37 E-value=3.1e+02 Score=21.29 Aligned_cols=62 Identities=5% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHhccCCCceEEEEEECCCc-chHHHHHHHHHHHHHcCceeeeecCCC--CCCHHHHHHHHHHhcCC
Q 031035 31 LLSEKYGKVPGLAVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPE--QVSEAELISKVHELNVM 95 (167)
Q Consensus 31 ~l~~~~g~~P~Laii~vg~d~-as~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 95 (167)
.+++. |+ ..++|++++.. --..|...-.+.|++.|+.+-.+++.. +...+|....++.+..+
T Consensus 19 ~vk~~-gi--~fviiKateG~~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~~~~qA~~f~~~~~~~ 83 (191)
T cd06413 19 RVRAQ-GV--SFAYIKATEGGDHVDKRFAENWRGARAAGLPRGAYHFFTFCRSGAEQAANFIRNVPKD 83 (191)
T ss_pred HHHhC-CC--cEEEEEEcCCCCccCHHHHHHHHHHHHcCCceEEEEEEecCCCHHHHHHHHHHhcCCC
Confidence 34433 54 59999998743 244555567789999999999999853 22345555666666543
No 418
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=26.25 E-value=1e+02 Score=26.85 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
.+.+...+.++++|........+...+.+++++.++. |+...+=-+.+|||..+-
T Consensus 267 ~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~~~~~l~~---dkk~~~~~~~~vL~~~iG 321 (346)
T cd08196 267 LHSQELHEVLKKILLPIQEIADLAHIDADTLLAAFAK---DKKHSGTQLRLILPDAEG 321 (346)
T ss_pred HHHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHH---hhCccCCeEEEEEEccCC
Confidence 3456678888888887554223344566777777766 444444445556776653
No 419
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=26.21 E-value=1.5e+02 Score=27.90 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCC-CCC-CC-CHHHHHhcCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLP-LPK-HI-NEEKVLGEIS 121 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~P-LP~-~i-d~~~i~~~I~ 121 (167)
.++-.++++.|++..+|++|.||++..- +|. .+ ..+++.++|.
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~ 120 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALS 120 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999999999975 342 11 2345666664
No 420
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.16 E-value=3.3e+02 Score=21.85 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCC
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPD 97 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 97 (167)
++++-++++++. | +-++.++++.. +.....++++|+.|...-.- -....+..+++++|-++.
T Consensus 50 e~~~W~~e~k~~-g----i~v~vvSNn~e-----~RV~~~~~~l~v~fi~~A~K--P~~~~fr~Al~~m~l~~~ 111 (175)
T COG2179 50 ELRAWLAELKEA-G----IKVVVVSNNKE-----SRVARAAEKLGVPFIYRAKK--PFGRAFRRALKEMNLPPE 111 (175)
T ss_pred HHHHHHHHHHhc-C----CEEEEEeCCCH-----HHHHhhhhhcCCceeecccC--ccHHHHHHHHHHcCCChh
Confidence 444445667655 3 33334444333 24567889999998766442 245789999999998864
No 421
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.15 E-value=2e+02 Score=25.90 Aligned_cols=66 Identities=5% Similarity=0.072 Sum_probs=39.0
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++||...+.++=.=..+...+..-.+.|.......-.+....++.+.|+.+|..+.+|-|+|-+=
T Consensus 131 ~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RG 196 (432)
T TIGR00237 131 RVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRG 196 (432)
T ss_pred EEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecC
Confidence 466666554333333333333333222333333333344557899999999999888999999653
No 422
>PRK10824 glutaredoxin-4; Provisional
Probab=26.13 E-value=2.7e+02 Score=20.47 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 26 AEEVRLLSEKYGKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 26 k~~v~~l~~~~g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++.|+++.++ .| ++++.-| .+...--|=+..++..++.|+.+..+.+.++ .++.+.+.+++.-+.|==|.|-
T Consensus 5 ~~~v~~~I~~---~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 5 IEKIQRQIAE---NP-ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred HHHHHHHHhc---CC-EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEEC
Confidence 3444444333 34 3344333 2335667888888889999999999988654 4688889998877776555553
No 423
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.11 E-value=2.3e+02 Score=19.71 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=38.5
Q ss_pred EEEEECCCcchHHH-HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 43 AVVIVGGRKDSQSY-VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 43 aii~vg~d~as~~Y-~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
.++-.|.--++-.- +...++.+++.|++++..+.+- .++...+ .++|-|+..-|++..++
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~------~~~D~iv~t~~~~~~~~ 65 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM------DGVHLICTTARVDRSFG 65 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc------CCCCEEEECCccccccC
Confidence 34556666666666 5666788899999988887432 3443322 33677777777776543
No 424
>cd08503 PBP2_NikA_DppA_OppA_like_17 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=26.06 E-value=2.5e+02 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=30.4
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ 79 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~ 79 (167)
.+|.++...+++....-++..+..++++||+++...++..
T Consensus 322 ~~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~i~~~~~~ 361 (460)
T cd08503 322 LEVELVTSDAAPGAVDAAVLFAEQAAQAGININVKRVPAD 361 (460)
T ss_pred ceEEEEecCCCccHHHHHHHHHHHHHhhCCEEEEEEeChh
Confidence 4566655555556777888899999999999998877653
No 425
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=25.96 E-value=2.2e+02 Score=25.33 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.4
Q ss_pred EEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 44 ii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
++...+|+|-...+....+.+.+.|+.+....+|+.-+.+|++.
T Consensus 304 vl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~~lp~gkDpdd~l~ 347 (415)
T TIGR01391 304 ILCFDGDKAGRKAALRAIELLLPLGINVKVIKLPGGKDPDEYLR 347 (415)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 45556677777777777777888899888888887666666654
No 426
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=25.78 E-value=1.9e+02 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=14.1
Q ss_pred EEEEeCCCCCCCCHHHHHhcC
Q 031035 100 GILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 100 GIlvq~PLP~~id~~~i~~~I 120 (167)
|.++..|..+++....|.+.|
T Consensus 122 ~~v~~~~~~~~iSSs~Ir~ri 142 (144)
T TIGR02199 122 GQVVLLPFVEGRSTTAIIEKI 142 (144)
T ss_pred CEEEEEeCCCCcCHHHHHHHH
Confidence 566667766677777776654
No 427
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=25.75 E-value=1.9e+02 Score=19.01 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=26.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeec
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID 75 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~ 75 (167)
=.++...+|.+-...++...+...+.|+++....
T Consensus 45 ~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~~ 78 (79)
T cd03364 45 EVILAFDGDEAGQKAALRALELLLKLGLNVRVLT 78 (79)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3556677788888888888888888899887664
No 428
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.64 E-value=83 Score=31.42 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
++++.|.+....++.|++. |+++. ++-|||.++.. +.|+++||+-..-+ ..+++=.+.|++|-++.
T Consensus 720 l~D~vr~~a~~av~~Lk~~-Gi~v~---mLTGDn~~aA~------svA~~VGi~~V~ae----v~P~~K~~~Ik~lq~~~ 785 (951)
T KOG0207|consen 720 LEDQVRPDAALAVAELKSM-GIKVV---MLTGDNDAAAR------SVAQQVGIDNVYAE----VLPEQKAEKIKEIQKNG 785 (951)
T ss_pred eccccchhHHHHHHHHHhc-CceEE---EEcCCCHHHHH------HHHHhhCcceEEec----cCchhhHHHHHHHHhcC
Confidence 5677788888889999876 76654 44588877654 45889997644333 34455556666666564
No 429
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.50 E-value=1.7e+02 Score=24.39 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=10.0
Q ss_pred HHHHHHHHcCceeeeecCC
Q 031035 59 MKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~ 77 (167)
.|..+|.++||.+.++.=|
T Consensus 214 eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 214 EKVKAAEALGINVIRIARP 232 (256)
T ss_pred HHHHHHHHcCCcEEEEeCC
Confidence 3555555555555555443
No 430
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=25.45 E-value=1.5e+02 Score=24.33 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCcee
Q 031035 12 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS 71 (167)
Q Consensus 12 ldGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~ 71 (167)
+.+..-.++++.+++++++.+.+ .|+.|.=.=---+-. ....+.+...+.|++.|+.+
T Consensus 95 ~~~~~~~~ev~~E~~AQi~~f~~-~G~~P~hiD~H~h~h-~~p~v~~~~~~~a~~y~lp~ 152 (261)
T PF04794_consen 95 LLRRADYEEVERELRAQIERFLD-MGRKPDHIDGHQHVH-FHPPVREALLDLAKEYGLPW 152 (261)
T ss_dssp HCCC--HHHHHHHHHHHHHHHHC-CSS-ECEEEEGGGGG-CSHHHHHHHHHHHHHCT-EB
T ss_pred hhccCCHHHHHHHHHHHHHHHHH-cCCCCCeEecccccc-cChHHHHHHHHHHHHcCCCc
Confidence 44556678889999999999987 799886442221111 23578889999999999966
No 431
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=25.39 E-value=3.1e+02 Score=23.69 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=48.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (167)
.+++-|+...+++-+.+ .++ | +..| |..+..- ...|.+......++.|+++....++.+.+.+.+.+.
T Consensus 9 ~~i~~G~g~~~~l~~~l----~~~----g-~~~l--ivtd~~~-~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~ 76 (366)
T PRK09423 9 SKYVQGKGALARLGEYL----KPL----G-KRAL--VIADEFV-LGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRL 76 (366)
T ss_pred ceEEECCCHHHHHHHHH----HHc----C-CEEE--EEEChhH-HHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHH
Confidence 34566766655554443 322 4 2222 2234332 345777888888899998765567777787777777
Q ss_pred HHHhcCCCCCcEEE
Q 031035 89 VHELNVMPDVHGIL 102 (167)
Q Consensus 89 I~~lN~D~~V~GIl 102 (167)
++.+.+- +++.|+
T Consensus 77 ~~~~~~~-~~d~II 89 (366)
T PRK09423 77 VAIAEEN-GCDVVI 89 (366)
T ss_pred HHHHHhc-CCCEEE
Confidence 7766543 467766
No 432
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.39 E-value=3.5e+02 Score=23.30 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=65.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-. ++...++-......+...+.-+.-.++...+++| +..++.+++
T Consensus 35 aiI~vg~d~as~~Yv~~k~k~~---~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~ 109 (297)
T PRK14167 35 ATVLMSDDPASETYVSMKQRDC---EEVGIEAI--DVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVL 109 (297)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 4455555545555444433322 22376554 4556666556667777777777776666666665 888888766
Q ss_pred HHHHHhcCCCCCcEEEEe--------CCCCCCCCHHHHHhcCCCCC-CcccCCcc
Q 031035 87 SKVHELNVMPDVHGILVQ--------LPLPKHINEEKVLGEISLEK-DVDGFHPL 132 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~PLP~~id~~~i~~~I~P~K-DVDGl~~~ 132 (167)
+.| +-+.+|||+=-. .|....--...+++.+...+ |+.|-+-.
T Consensus 110 ~~I---~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~Gk~vv 161 (297)
T PRK14167 110 RRI---DPAKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAGVDTEGADVV 161 (297)
T ss_pred hcc---CcccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEE
Confidence 655 457889997321 11111123455555555433 66666543
No 433
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.34 E-value=1.9e+02 Score=24.80 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=52.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-.+ +...++-......+...+.-+.-.++.-.+++ |+..++.+++
T Consensus 35 aii~vg~d~as~~Yv~~k~k~~---~~~Gi~~~~--~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~ 109 (286)
T PRK14184 35 AVILVGEDPASQVYVRNKERAC---EDAGIVSEA--FRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCL 109 (286)
T ss_pred EEEEeCCChhHHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHH
Confidence 4455665555555544433322 223775554 45565655566666677776766666666665 5889888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+.+|||+=
T Consensus 110 ~~I---~p~KDVDGl~ 122 (286)
T PRK14184 110 ELI---DPAKDVDGFH 122 (286)
T ss_pred hcc---CcccCcccCC
Confidence 555 4578899873
No 434
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=25.31 E-value=3.3e+02 Score=23.39 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=43.3
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+.++|...++ .+..+.+...+.+++.|+.+.. ..++. +..++...|.++.+....+-|++.
T Consensus 134 ~vaii~~~~~-~~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 134 HVAIVSSPQD-IWVETAQKLASALRAHGLPVGLVTSMGP--DEKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred EEEEEEeccc-chHHHHHHHHHHHHHCCCcEEEEEEecC--CHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5777765544 4457788889999999998764 34443 456899999999776556666663
No 435
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.31 E-value=2.5e+02 Score=23.14 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=40.6
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCC-------CCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPE-------QVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~-------~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+++++---.+.- -+...++.++.||++..+ .|.. .++.+.+.+.+.++ .++++++|++.
T Consensus 121 ~RIalvTPY~~~v----~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifis 188 (239)
T TIGR02990 121 RRISLLTPYTPET----SRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLS 188 (239)
T ss_pred CEEEEECCCcHHH----HHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEe
Confidence 4677765443222 234567788999998776 3322 26788999999888 46789999884
No 436
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=25.23 E-value=1.4e+02 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=24.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHc
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEV 67 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~ 67 (167)
.|-...+|+.|.|..-+++..+.||+.
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~ 31 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETE 31 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHh
Confidence 577888999999999999999999964
No 437
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.22 E-value=2e+02 Score=24.42 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC--CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC--
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE--QVSEAELISKVHELNVMPDVHGILVQLPLPKHIN-- 112 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id-- 112 (167)
|+.| .|+-+|.+. ..-.-...|.|+++|++.....-|- ..+++++.+..+.+.+.-+.--|+=..|-..+.|
T Consensus 72 grvp--viaG~g~~~--t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~ 147 (299)
T COG0329 72 GRVP--VIAGVGSNS--TAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLS 147 (299)
T ss_pred CCCc--EEEecCCCc--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 6677 444455443 3333456789999999988776543 2458899999999888877776666678776543
Q ss_pred HHHHHhcCCCCCCcccC
Q 031035 113 EEKVLGEISLEKDVDGF 129 (167)
Q Consensus 113 ~~~i~~~I~P~KDVDGl 129 (167)
.+.+.. +...+-|-|+
T Consensus 148 ~e~i~~-la~~~nivgi 163 (299)
T COG0329 148 PETIAR-LAEHPNIVGV 163 (299)
T ss_pred HHHHHH-HhcCCCEEEE
Confidence 333333 3335555555
No 438
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.18 E-value=3.8e+02 Score=22.85 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=24.2
Q ss_pred HHHHHHcCceeeeecCCCC---CCHHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D 95 (167)
...|++.||.+..+..... ..++++++.+++++-|
T Consensus 134 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D 171 (289)
T PRK13010 134 QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAE 171 (289)
T ss_pred HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCC
Confidence 4789999999987654321 1245678888887655
No 439
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.11 E-value=2e+02 Score=24.82 Aligned_cols=85 Identities=13% Similarity=0.216 Sum_probs=52.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+.-. .+...++.......+...+.-+.-.++...+++| +..++.+++
T Consensus 36 aiI~vg~d~as~~Yv~~k~k~a~---~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~ 110 (294)
T PRK14187 36 IVILVGDDPASQLYVRNKQRKAE---MLGLRSE--TILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLII 110 (294)
T ss_pred EEEEeCCChhHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 44566655565555554443322 2376444 4555666555556667777777766666666665 889888766
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|. -+.+|||+
T Consensus 111 ~~I~---p~KDVDGl 122 (294)
T PRK14187 111 NTID---PEKDVDGF 122 (294)
T ss_pred hccC---cccCcccC
Confidence 6554 47889997
No 440
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.09 E-value=3.3e+02 Score=23.29 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=51.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+.. ++.|+.-.+ +...++.......+...+.-+.-.++...+++| +..++.+++
T Consensus 36 aii~vg~d~as~~Yv~~k~k~~---~~~Gi~~~~--~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~ 110 (285)
T PRK14189 36 AVILVGDNPASQVYVRNKVKAC---EDNGFHSLK--DRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVI 110 (285)
T ss_pred EEEEeCCCchHHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHH
Confidence 3455555445555444433322 223765444 455666566667777777777766666666655 888887666
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.| +-+.+|||+
T Consensus 111 ~~I---~p~KDVDGl 122 (285)
T PRK14189 111 EAI---APEKDVDGF 122 (285)
T ss_pred hhc---CcccCcccC
Confidence 555 457889997
No 441
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=25.07 E-value=98 Score=25.19 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcch
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDS 53 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as 53 (167)
+++-|+.+++. |-+|.+++|++...-.+
T Consensus 157 i~E~Ie~lke~-g~kpv~v~VL~dK~G~d 184 (203)
T COG0856 157 IKETIEQLKEE-GGKPVLVVVLADKKGVD 184 (203)
T ss_pred HHHHHHHHHHc-CCCcEEEEEEEccCCcc
Confidence 44555666665 78999999999865443
No 442
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=24.98 E-value=90 Score=18.67 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 69 IKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 69 i~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
..++.+.|+...+.+++++.|+.++.
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~p 32 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLNP 32 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHCS
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcCC
Confidence 34667789999999999999999955
No 443
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.96 E-value=3.4e+02 Score=23.24 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=51.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-. ++...++....-..+...+.-+.-.++.-.+++ |+..++..++
T Consensus 36 aii~vg~d~as~~Yv~~k~k~a---~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~ 110 (284)
T PRK14190 36 AVILVGDDPASHSYVRGKKKAA---EKVGIYSE--LYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVI 110 (284)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 3455565555555554443322 22376544 455566655555666677776776666666655 5888888776
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|. -+++|||+
T Consensus 111 ~~I~---p~KDVDGl 122 (284)
T PRK14190 111 ERIS---PEKDVDGF 122 (284)
T ss_pred hcCC---cccccccc
Confidence 6554 47889998
No 444
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=24.93 E-value=3.4e+02 Score=21.30 Aligned_cols=63 Identities=5% Similarity=0.125 Sum_probs=36.9
Q ss_pred eEEEEEECC-CcchHHHHHHHHHHHHHc---CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVGG-RKDSQSYVSMKRKACAEV---GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~-d~as~~Y~~~k~k~~~~~---Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.++++...+ +..+..|.++..+..+.. |++++.+...-... .+++..+.++=.+..-++++|-
T Consensus 27 ~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~-~~~~~~v~~~i~~~~~~~v~vn 93 (203)
T TIGR01884 27 DLVILVKSPIEDGARRAVESLRAIISDLGGNLVEGTIKEIELKDV-PSILRQMSDIIKEEREPRVIIN 93 (203)
T ss_pred cEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCcceEEEEecCCH-HHHHHHHHHHHHhcccCcEEEE
Confidence 344443333 466888888888888887 67777777754433 3444444444333333456665
No 445
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=24.92 E-value=1.5e+02 Score=25.51 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 56 YVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+.....+..++.|+++..+. +..+.+.+++.+.++.+.+- ++|.|+-
T Consensus 37 ~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIa 84 (366)
T PF00465_consen 37 LVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKF-GADCIIA 84 (366)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHT-TSSEEEE
T ss_pred cHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCEEEE
Confidence 67777778899999998887 78888888888888887755 6788876
No 446
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=24.89 E-value=4.8e+02 Score=24.47 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+.+..++-.|+++.|..-|++|- +...+..|. =.+..=.+|++.. +|-++....++..|+. +-|=+
T Consensus 273 e~LA~qih~LRRq~G~aLKIvVR---E~~~~LR~~--DE~LLL~~GaNlI---vp~~~plSR~lt~IEs------iQGQ~ 338 (519)
T PRK15045 273 EPLARSIHTLRRQRGSAMKILVR---ENTASLRAT--DERLLLGCGANMV---IPWNAPLSRCLTMIES------VQGQK 338 (519)
T ss_pred HHHHHHHHHHHHhcCccceEEEE---echhHHHHH--HHHHHHhcCCcEE---ecCCCCHHHHHHHHHH------Hhcce
Confidence 56777778888777887777663 344566663 4566777899854 4667788999999998 58999
Q ss_pred EeCCCCCCCCHHHHHhcCCCCCC
Q 031035 103 VQLPLPKHINEEKVLGEISLEKD 125 (167)
Q Consensus 103 vq~PLP~~id~~~i~~~I~P~KD 125 (167)
..+|+|..+ +.++++.-|.+.
T Consensus 339 ftR~vP~di--~aLL~~~~p~~~ 359 (519)
T PRK15045 339 FSRYVPEDI--TTLLSMTQPLKL 359 (519)
T ss_pred ecCCCCccH--HHHHHhcccccc
Confidence 999999776 568888888664
No 447
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=24.86 E-value=45 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=19.0
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCC
Q 031035 75 DLPEQVSEAELISKVHELNVMPD 97 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~ 97 (167)
.+....|++|+-+.|..|++.++
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~~ 27 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIPN 27 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCCC
Confidence 34567899999999999998765
No 448
>PTZ00226 fumarate hydratase; Provisional
Probab=24.84 E-value=3.2e+02 Score=25.96 Aligned_cols=77 Identities=13% Similarity=0.234 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceee-e----ecCCCCCCHHHHHHHHHHhc
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSF-D----IDLPEQVSEAELISKVHELN 93 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~-~----~~l~~~~~~~el~~~I~~lN 93 (167)
+.+++.+.+.|..+... ..+|...-|-+|...+.....-.|.-.++.+|-.-. - .-|....=|+++++.+++|+
T Consensus 235 ~~i~~fVle~V~~~G~~-aCPP~~vGVGIGGts~E~a~~laK~Al~r~ld~~~~~~~~~~~~~r~a~LE~eLle~iN~lG 313 (570)
T PTZ00226 235 KSLRKFLEEKIKTIGTS-ACPPYHLAVVIGGLSAEMTLKTVKLASCRYYDSLPTSGDEYGRAFRDLEWEEIILEKTQNIG 313 (570)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCceEEEEECCCHHHHHHHHHHHHhhCcccccCCCCCccccchHHHHHHHHHHHHHhhhC
Confidence 56777787777776433 488999999999887777777777778888772100 0 00001112577888888776
Q ss_pred CCC
Q 031035 94 VMP 96 (167)
Q Consensus 94 ~D~ 96 (167)
=-+
T Consensus 314 IGp 316 (570)
T PTZ00226 314 IGA 316 (570)
T ss_pred cCc
Confidence 444
No 449
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=24.82 E-value=3.5e+02 Score=21.85 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
.+.+.+..++++ .|.+.++.+|+.+....|.+...+.+++.|+.-.+.-++. .+++.+.+..
T Consensus 202 ~li~~~~~l~~~---~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~l~~ 263 (355)
T cd03819 202 VFIEALARLKKD---DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH---CSDMPAAYAL 263 (355)
T ss_pred HHHHHHHHHHhc---CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC---cccHHHHHHh
Confidence 344444455432 3567788888887777777777778888887644444433 3456666555
No 450
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=24.75 E-value=2.5e+02 Score=24.94 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCc-eEEEEEECCCcch-----HHHHHHHHHHHHHcC
Q 031035 13 DGKAVAQTIRSEIAEEVRLLSEKYGKVP-GLAVVIVGGRKDS-----QSYVSMKRKACAEVG 68 (167)
Q Consensus 13 dGk~la~~i~~~lk~~v~~l~~~~g~~P-~Laii~vg~d~as-----~~Y~~~k~k~~~~~G 68 (167)
.|+++...+.+-+++.+..+++.+|..| ++.+.|-|-..+. ..++...+++|.+++
T Consensus 243 ~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~ 304 (426)
T cd04657 243 HRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLY 304 (426)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555666677778888888887778788 5666777765543 355667788888764
No 451
>PRK05568 flavodoxin; Provisional
Probab=24.73 E-value=2.4e+02 Score=20.39 Aligned_cols=57 Identities=9% Similarity=0.192 Sum_probs=44.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
++.||.......++..++...+.+++.|++++.+.+.+.. .. .+ .+-++|++=-|.-
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~-~~-------~~---~~~d~iilgsp~y 59 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS-VD-------DV---KGADVVALGSPAM 59 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC-HH-------HH---HhCCEEEEECCcc
Confidence 5778888888889999999999999999999999886532 21 12 2347999999975
No 452
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=24.70 E-value=3.6e+02 Score=21.48 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=28.2
Q ss_pred EECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 46 ~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.+++.+. -...|++.||.+..+......+ ++++.+.+++++-|
T Consensus 34 vvs~~~~~~-----~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 82 (200)
T PRK05647 34 VISDRPDAY-----GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPD 82 (200)
T ss_pred EEecCccch-----HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcC
Confidence 345555443 3678999999987755322212 45677888877655
No 453
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=24.65 E-value=1.9e+02 Score=22.07 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.3
Q ss_pred eEEEEEECCCc-chHHHHHHHHHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhc
Q 031035 41 GLAVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPEQVS----EAELISKVHELN 93 (167)
Q Consensus 41 ~Laii~vg~d~-as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN 93 (167)
..++|++++-. -...|...-.+.|++.|+.+-.++|..-.+ ++|.--.++.++
T Consensus 21 ~fviikateG~~~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~~~~~a~~qA~~f~~~~~ 78 (181)
T PF01183_consen 21 DFVIIKATEGTSYVDPYFESNIKNAKAAGLPVGAYHFARATNSSDAEAQADYFLNQVK 78 (181)
T ss_dssp EEEEEEEEETTTEE-TTHHHHHHHHHHTTSEEEEEEE--TTTHCHHHHHHHHHHHCTH
T ss_pred CEEEEEeeeCCCeecchHHHHHHHHHHcCCeEEEEEEeccCCcccHHHHHHHHHHHhc
Confidence 78999998643 233445567788999999999999977543 345555555563
No 454
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=24.63 E-value=1.4e+02 Score=25.06 Aligned_cols=47 Identities=11% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.--..++++|+++....|. +.++++.+.++.+... ++.|.-|-.|..
T Consensus 27 ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K 73 (289)
T PRK12548 27 MYNYSFQKAGLDYAYLAFD--IPVDKVPDAIKAIKTF-NMRGANVTMPCK 73 (289)
T ss_pred HHHHHHHHcCCCEEEEEEe--cCHHHHHHHHHHHHHC-CCCEEEECccCH
Confidence 3445678999998877664 4567888888887654 799999999965
No 455
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=24.59 E-value=4.9e+02 Score=23.00 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 55 SYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
.+.....+..++.|+++..+. +..+-+.+.+.+.++.+.+. ++|.|+-.-= -+-+|.-++...
T Consensus 38 g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGG-GSviD~AKaia~ 101 (414)
T cd08190 38 PPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKG-QFDAFVAVGG-GSVIDTAKAANL 101 (414)
T ss_pred chHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCC-ccHHHHHHHHHH
Confidence 356777888889999998763 45566777787777776654 4678765311 123566665543
No 456
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.59 E-value=2.9e+02 Score=24.24 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC--CCCCCcc
Q 031035 55 SYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI--SLEKDVD 127 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I--~P~KDVD 127 (167)
.|.....+..++.|+++..+. +.++-+.+.+.+.++.+.+. ++|.|+-.-= -+-+|.-+....+ +|.+|++
T Consensus 36 g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGG-GS~iD~AK~iA~~~~~~~~~~~ 109 (398)
T cd08178 36 GYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSF-KPDTIIALGG-GSPMDAAKIMWLFYEHPEVDFE 109 (398)
T ss_pred ccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCC-ccHHHHHHHHHHHHhCCCcchh
Confidence 378788888999999887763 66677778777777776643 5788885211 1236766665532 3444443
No 457
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.42 E-value=3.3e+02 Score=20.89 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=39.1
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
...++.++|-..+.-.. ....++-+|++...+.+. +.+|+...|+++-++. ++.|+
T Consensus 75 ~~~~~Iavv~~~~~~~~------~~~~~~ll~~~i~~~~~~---~~~e~~~~i~~~~~~G-~~viV 130 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG------LESIEELLGVDIKIYPYD---SEEEIEAAIKQAKAEG-VDVIV 130 (176)
T ss_dssp CCTSEEEEEEESS-SCC------HHHHHHHHT-EEEEEEES---SHHHHHHHHHHHHHTT---EEE
T ss_pred hcCCcEEEEecccccHH------HHHHHHHhCCceEEEEEC---CHHHHHHHHHHHHHcC-CcEEE
Confidence 56689999988765443 455677789998888874 5789999999987664 55543
No 458
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.30 E-value=2.3e+02 Score=24.46 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.-. .+...++-.-....+...+.-+.-.++...+++| +..++++++
T Consensus 37 aiI~vg~d~as~~Yv~~k~k~~~---~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~ 111 (297)
T PRK14168 37 VTILVGESPASLSYVTLKIKTAH---RLGFHEI--QDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVL 111 (297)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEE--EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 34455555555555444433322 2376543 4455555555556667777777766676666665 888888766
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.|. -+.+|||+=
T Consensus 112 ~~I~---p~KDVDGl~ 124 (297)
T PRK14168 112 NAID---PDKDVDGFH 124 (297)
T ss_pred hccC---ccccccccC
Confidence 6554 478899974
No 459
>cd08489 PBP2_NikA The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides,
Probab=24.28 E-value=2.5e+02 Score=24.71 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=31.4
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
+.++-.++++....-+...++.++++||+++...++. .++.+.+
T Consensus 336 ~~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~----~~~~~~~ 379 (488)
T cd08489 336 LELVYQTDNALQKSIAEYLQSELKKIGIDLNIIGEEE----QAYYDRQ 379 (488)
T ss_pred EEEEecCCCchHHHHHHHHHHHHHHcCcEEEEeeccH----HHHHhHh
Confidence 4444445567788888999999999999999876543 4555444
No 460
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=24.28 E-value=3.8e+02 Score=21.86 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred CceEEEEEECCCcc--------hHHHHHHHHHHHHHcCceeeeecCCCCCC------HHHHHHHHHHhcCCCCCcEEEEe
Q 031035 39 VPGLAVVIVGGRKD--------SQSYVSMKRKACAEVGIKSFDIDLPEQVS------EAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~d~a--------s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~------~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.-+|..+++.++.. +..++-.-.+.|-+.|+++...-+.-... .+.+.+.|+++.+ .||+|.
T Consensus 65 ~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~----~Gilvv 140 (247)
T cd07491 65 SAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALD----RGILLF 140 (247)
T ss_pred CCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHh----CCeEEE
Confidence 35788899987533 44566777888888898887777654432 5788888888755 588876
Q ss_pred C
Q 031035 105 L 105 (167)
Q Consensus 105 ~ 105 (167)
-
T Consensus 141 a 141 (247)
T cd07491 141 C 141 (247)
T ss_pred E
Confidence 3
No 461
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=24.25 E-value=4.8e+02 Score=22.80 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=45.4
Q ss_pred HHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 29 VRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 29 v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+-.+++..|.--.+-+..+||. +--.++..-.|.++|+++.+..=..--..+++++.-++.-++
T Consensus 141 l~Ti~E~~g~l~g~k~a~vGDg---NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~ 204 (310)
T COG0078 141 LMTIKEHFGSLKGLKLAYVGDG---NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKE 204 (310)
T ss_pred HHHHHHhcCcccCcEEEEEcCc---chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHh
Confidence 3344444454456888899986 777889999999999999987643333457777777775444
No 462
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.17 E-value=3.4e+02 Score=20.97 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
|.+|++.+...|-|.-+ .=.+...+..+..|+++..- +-..|++|+.++- + +.+||.|.|-
T Consensus 10 g~rprvlvak~GlDgHd-~gakvia~~l~d~GfeVi~~--g~~~tp~e~v~aA--~--~~dv~vIgvS 70 (143)
T COG2185 10 GARPRVLVAKLGLDGHD-RGAKVIARALADAGFEVINL--GLFQTPEEAVRAA--V--EEDVDVIGVS 70 (143)
T ss_pred CCCceEEEeccCccccc-cchHHHHHHHHhCCceEEec--CCcCCHHHHHHHH--H--hcCCCEEEEE
Confidence 78999999999955432 33456778899999886644 5566777776654 2 2356777764
No 463
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=24.12 E-value=3.1e+02 Score=24.19 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=67.9
Q ss_pred CCceEEEEEECCCc-------------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRK-------------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~-------------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|+.++|..|+.- +|+.|. ....+++.|++...+..-.+ +.+++.+.|+++-+. .|=||.-
T Consensus 167 ~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~--l~~~l~~~G~~~~~~~~v~D-d~~~i~~~l~~a~~~--~Dliitt 241 (394)
T cd00887 167 RRPRVAIISTGDELVEPGEPLAPGQIYDSNSYM--LAALLRELGAEVVDLGIVPD-DPEALREALEEALEE--ADVVITS 241 (394)
T ss_pred cCCEEEEEeCCCcccCCCCCCCCCEEEEChHHH--HHHHHHHCCCEEEEeceeCC-CHHHHHHHHHHHhhC--CCEEEEe
Confidence 47899999999742 466653 66678889998877754333 568899999888654 5555554
Q ss_pred CCCC-CCCCH-HHHHhcCCCCCCcccCC-----cccHHHhhccCCCCCC-CCchHHHHHHHhhhc
Q 031035 105 LPLP-KHINE-EKVLGEISLEKDVDGFH-----PLNIGKLAMKGRDPLF-LPCTPKAIILYSCLI 161 (167)
Q Consensus 105 ~PLP-~~id~-~~i~~~I~P~KDVDGl~-----~~NlG~l~~g~~~~~~-~PcTp~avi~lL~~~ 161 (167)
-=.- ...|. ..+++.+..+.-+.|+. |.-+|.+ ++ ..-| +|-.|.|++..+..+
T Consensus 242 GG~s~g~~D~~~~al~~~g~~~~f~gv~~kPG~p~~~g~~--~~-~~v~~LPG~P~sa~~~~~~~ 303 (394)
T cd00887 242 GGVSVGDYDFVKEVLEELGGEVLFHGVAMKPGKPLAFGRL--GG-KPVFGLPGNPVSALVTFELF 303 (394)
T ss_pred CCCCCCcchhHHHHHHhCCCeEEEEEEEEecCCCEEEEEE--CC-EEEEECCCCHHHHHHHHHHH
Confidence 3221 12232 33444443344444442 2222221 11 2333 699999987766543
No 464
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=4.4e+02 Score=22.23 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCH-HHHHHHHHHhcCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSE-AELISKVHELNVM 95 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~-~el~~~I~~lN~D 95 (167)
-+++++.-.+=..++.-.-...|+.++.++.+..+.|-+.... +-+.+.|..+|.-
T Consensus 108 ~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~ 164 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK 164 (259)
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC
Confidence 3444333333334555555677888999999999999887776 7888899999985
No 465
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=24.07 E-value=1.6e+02 Score=24.86 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHcCceeeeecCCCC---CCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.--..+++.|+++....+.-. ++++++.+.++.+... ++.|.-|-+|..
T Consensus 22 ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~K 73 (283)
T PRK14027 22 MHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPYK 73 (283)
T ss_pred HHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccCH
Confidence 445668899999888777522 3467788888877554 799999999965
No 466
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=24.07 E-value=29 Score=27.20 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=26.0
Q ss_pred CCCceEEEEEECCCcchHH-------------------------HHHHHHHHHHHcCceeeeec
Q 031035 37 GKVPGLAVVIVGGRKDSQS-------------------------YVSMKRKACAEVGIKSFDID 75 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~-------------------------Y~~~k~k~~~~~Gi~~~~~~ 75 (167)
...|....|++|++..+.. |++..++.|..-|+++.+..
T Consensus 85 SY~Ps~I~V~~G~~~~~L~el~~V~i~~~~~~v~Ll~~~~~~~~~IqI~I~~ch~~GiDt~Irg 148 (152)
T cd08664 85 SYMPSLVVVSGGDSLNSLKELKTINVNATDTLVTLLQDVKEYYRYIEIAIKQCRNNGIDCKIHG 148 (152)
T ss_pred CcCCceEEEEecCChhhhheeEEEEcCCCCceEEeccCCCeeeEEEEEEhHhhhhCCCcceeeE
Confidence 5688889999998754321 35666667777777666554
No 467
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=24.06 E-value=1.7e+02 Score=20.90 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=4.0
Q ss_pred EEEEeCCC
Q 031035 100 GILVQLPL 107 (167)
Q Consensus 100 GIlvq~PL 107 (167)
.-++.+|+
T Consensus 88 p~LikRPI 95 (117)
T TIGR01617 88 PALLRRPL 95 (117)
T ss_pred cceEecCE
Confidence 44455554
No 468
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.95 E-value=4.2e+02 Score=21.92 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=48.2
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.-+++.+.-.+-..|+--.=...|..++.|+....+.|.+-..++-+-+.|...|..++-| +.+--|=|.
T Consensus 107 ~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~n~~~l~efIda~N~~dssh-l~~~~P~p~ 176 (243)
T COG5148 107 RQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAANMAGLFEFIDATNFSDSSH-LEVKPPNPE 176 (243)
T ss_pred ceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhhhhhHHHHHHHhhcccccee-eEecCCCHH
Confidence 3456655544444555445567788899999999999998888888888999998855433 444445443
No 469
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=23.92 E-value=3.6e+02 Score=23.23 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=44.1
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCC-CCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQ-VSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
-+.++|.. +++-.....+...+.+++.|+.+.... ++.. ..+.++...+.++.. .+.+.|++-.+-
T Consensus 177 k~vaii~~-~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~-~~~dvIil~~~~ 244 (410)
T cd06363 177 NWVAFLGS-DDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQ-TKVNVIVVFASR 244 (410)
T ss_pred cEEEEEEe-CChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhc-CCCeEEEEEcCh
Confidence 35777655 566667777888899999999875432 2321 245678888888864 356788776553
No 470
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=23.86 E-value=4.3e+02 Score=22.01 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=53.3
Q ss_pred CCCceEEEEEECCCcch-------HHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHHHHHHHhcCC--------CCCc
Q 031035 37 GKVPGLAVVIVGGRKDS-------QSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELISKVHELNVM--------PDVH 99 (167)
Q Consensus 37 g~~P~Laii~vg~d~as-------~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~~~I~~lN~D--------~~V~ 99 (167)
.-.+.++||-.++.|++ ..|.+...|.-...|+..-=+.- ....+.+++.+.|.+...= -.|+
T Consensus 29 p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Yg~R~~~~V~~dI~~Y~~W~~~~~~~~~~vd 108 (253)
T PF12138_consen 29 PSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSYGSRPLSEVKADIDTYASWYGQSEDYGYRVD 108 (253)
T ss_pred CCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEccccCCCHHHHHHHHHHHhhccccccCCCcccc
Confidence 55678999999888874 48999988887777766543322 3456678999999888765 6899
Q ss_pred EEEEeCCCCCC
Q 031035 100 GILVQLPLPKH 110 (167)
Q Consensus 100 GIlvq~PLP~~ 110 (167)
||.+=. .|.+
T Consensus 109 GIFfDE-~p~~ 118 (253)
T PF12138_consen 109 GIFFDE-APND 118 (253)
T ss_pred eEEEec-CCCc
Confidence 999865 3433
No 471
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.77 E-value=3.8e+02 Score=23.13 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=64.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.- -.+...++-......+...+.-+.-.++...+++| +..++++++
T Consensus 43 aiI~vg~d~as~~Yv~~k~k~a~---~~Gi~~--~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~ 117 (299)
T PLN02516 43 AVVIVGSRKDSQTYVNMKRKACA---EVGIKS--FDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKIL 117 (299)
T ss_pred EEEEECCChhHHHHHHHHHHHHH---HcCCEE--EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHH
Confidence 44555555555555444433222 226543 34455555555556667777777776666666665 888887665
Q ss_pred HHHHHhcCCCCCcEE-------EEe---CCCCCCCCHHHHHhcCCCCC-CcccCCcc
Q 031035 87 SKVHELNVMPDVHGI-------LVQ---LPLPKHINEEKVLGEISLEK-DVDGFHPL 132 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI-------lvq---~PLP~~id~~~i~~~I~P~K-DVDGl~~~ 132 (167)
+.| +-+.+|||+ |.. .|-.-.--...+++.+.... |+.|-+-.
T Consensus 118 ~~I---~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vv 171 (299)
T PLN02516 118 NEI---SLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAV 171 (299)
T ss_pred hcc---CcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEE
Confidence 555 558889998 221 22111123455666665443 66666543
No 472
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.76 E-value=2e+02 Score=20.56 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHhc
Q 031035 58 SMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHELN 93 (167)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN 93 (167)
|...+..++.|+.++.+.+-+ ..|.+++...++.++
T Consensus 13 rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 13 RNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred HHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 344566777777777777633 346677777777765
No 473
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=23.73 E-value=4.4e+02 Score=22.05 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC----CCCHHHHHHHHHHhcC
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE----QVSEAELISKVHELNV 94 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~----~~~~~el~~~I~~lN~ 94 (167)
+++++++..-.+.+++..|..|++ ++.. .-.|-....+.+.+.|+....+.+.. ..+.+.+.+.+.+--
T Consensus 156 ~~~~~Ei~~~~~~i~~~~G~~p~~--fRpP----~G~~n~~~~~~l~~~G~~~v~Wsvd~~Dw~~~~~~~i~~~v~~~~- 228 (268)
T TIGR02873 156 EEIYDQINQTNEIIEATIGVTPKW--FAPP----SGSFNDNVVQIAADLQMGTIMWTVDTIDWKNPSPSVMVNRVLSKI- 228 (268)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCE--EECC----CCCCCHHHHHHHHHCCCeEEEeccCCCCCCCCCHHHHHHHHHhcC-
Confidence 344556655555565555877773 4443 22344566788899999887766632 124566666553311
Q ss_pred CCCCcEEEEeCCC
Q 031035 95 MPDVHGILVQLPL 107 (167)
Q Consensus 95 D~~V~GIlvq~PL 107 (167)
.+ .+|+++.+-
T Consensus 229 ~~--G~IILmHd~ 239 (268)
T TIGR02873 229 HP--GAMVLMHPT 239 (268)
T ss_pred CC--CcEEEEcCC
Confidence 11 457777764
No 474
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.61 E-value=3.5e+02 Score=20.96 Aligned_cols=64 Identities=16% Similarity=0.030 Sum_probs=35.2
Q ss_pred eEEEEEECCC-cchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 41 GLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
++++|.-..+ +.+....+.-.+.+++.|++.... ....+.+.++..+.++++ +..++++||+..
T Consensus 118 ~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 184 (269)
T cd06288 118 RIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCG 184 (269)
T ss_pred eEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEe
Confidence 5666642222 233445566688899999765432 112223334444444444 445679999884
No 475
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.54 E-value=3.7e+02 Score=23.10 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=66.9
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.- -++...++-...-..+...+.-+.-.++.-.+++ |+..++.+++
T Consensus 36 a~i~vg~~~~s~~Yv~~k~k~a~---~~Gi~~--~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~ 110 (296)
T PRK14188 36 AVVLVGEDPASQVYVRSKGKQTK---EAGMAS--FEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVI 110 (296)
T ss_pred EEEEeCCChhHHHHHHHHHHHHH---HcCCEE--EEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHH
Confidence 44555655555555444433322 237643 3455565655556667777777777666666765 5888888766
Q ss_pred HHHHHhcCCCCCcEEEEe--------CC--CCCCCCHHHHHhcCCCCC-CcccCCcccHH
Q 031035 87 SKVHELNVMPDVHGILVQ--------LP--LPKHINEEKVLGEISLEK-DVDGFHPLNIG 135 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~P--LP~~id~~~i~~~I~P~K-DVDGl~~~NlG 135 (167)
+.| +-+.+|||+=-. .+ +|. -...+++.+.... |+.|-+-.=+|
T Consensus 111 ~~I---~p~KDVDGl~~~n~g~l~~~~~~~~Pc--Tp~ai~~ll~~~~i~~~Gk~V~viG 165 (296)
T PRK14188 111 QAI---DPEKDVDGLHVVNAGRLATGETALVPC--TPLGCMMLLRRVHGDLSGLNAVVIG 165 (296)
T ss_pred hcc---CcccccccCChhhHHHHhCCCCCCcCC--CHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 555 457889997432 11 222 2455555554432 67777655555
No 476
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=23.47 E-value=3.6e+02 Score=22.95 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCCH---H---HHHhcCCCCCCcccCCccc------HHHhhccCC
Q 031035 76 LPEQVSEAELISKVHELNVM-PDVHGILVQLPLPKHINE---E---KVLGEISLEKDVDGFHPLN------IGKLAMKGR 142 (167)
Q Consensus 76 l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP~~id~---~---~i~~~I~P~KDVDGl~~~N------lG~l~~g~~ 142 (167)
+-...+.+++.++++.+.+- -.|.+.++.-| |..... . +-++.+.+.+|-=.++|.+ +.+++.
T Consensus 148 inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~-P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~--- 223 (313)
T TIGR01210 148 INKGSTFEDFIRAAELARKYGAGVKAYLLFKP-PFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWN--- 223 (313)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCcEEEEEEecC-CCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHH---
Confidence 45667788888888877654 33666665553 421110 1 1233333333222223333 334443
Q ss_pred CCCCCCchHHHHHHHhhhcc
Q 031035 143 DPLFLPCTPKAIILYSCLIN 162 (167)
Q Consensus 143 ~~~~~PcTp~avi~lL~~~~ 162 (167)
+..|.|++...++++|++..
T Consensus 224 ~G~~~pp~lws~~e~l~e~~ 243 (313)
T TIGR01210 224 RGLYRPPWLWSVAEVLKEAK 243 (313)
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 24588998888888887764
No 477
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.43 E-value=3.9e+02 Score=23.04 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=51.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.- -++...++-......+...+.-+.-.++.-.+++| +..++.+++
T Consensus 36 aiI~vgdd~as~~Yv~~k~k~a~---~~Gi~~--~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~ 110 (297)
T PRK14186 36 AVLRVGDDPASAVYVRNKEKACA---RVGIAS--FGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLL 110 (297)
T ss_pred EEEEeCCChHHHHHHHHHHHHHH---HcCCEE--EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 34555655555555444433222 237643 34455555555566777777777776777677665 888887655
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+.+|||+=
T Consensus 111 ~~I---~p~KDVDGl~ 123 (297)
T PRK14186 111 HAI---DPDKDADGLH 123 (297)
T ss_pred hcc---CcccCcccCC
Confidence 554 5588899974
No 478
>cd01142 TroA_e Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.35 E-value=2.2e+02 Score=23.17 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=44.2
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhccC---CCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeec----C
Q 031035 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYG---KVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDID----L 76 (167)
Q Consensus 8 m~~ildGk~la~~i~~~lk~~v~~l~~~~g---~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~----l 76 (167)
++.++.-.+-|+++.++++++++.++++.. ..++..++..+.++ +..+|.. ..++.+|.....-. .
T Consensus 130 lg~~~g~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~l~~~G~~n~~~~~~~~~ 206 (289)
T cd01142 130 LGELLGRQEKAEALVAYFDDNLAYVAARTKKLPDSERPRVYYAGPDPLTTDGTGSITN---SWIDLAGGINVASEATKKG 206 (289)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCChhhCceEEEECCCCceecCCCChHH---HHHHHhCCeEhhhccccCC
Confidence 466787788888888899998888876541 12333344455444 3344443 45667775532211 1
Q ss_pred CCCCCHHHHHH
Q 031035 77 PEQVSEAELIS 87 (167)
Q Consensus 77 ~~~~~~~el~~ 87 (167)
...++.|++.+
T Consensus 207 ~~~is~E~l~~ 217 (289)
T cd01142 207 SGEVSLEQLLK 217 (289)
T ss_pred ceEEcHHHHhh
Confidence 22356666554
No 479
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.27 E-value=2.4e+02 Score=24.33 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=51.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-.+ +...++.......+...+.-+.-.++.-.+++| +..++++++
T Consensus 35 aiI~vg~d~as~~Yv~~k~k~a---~~~Gi~~~~--~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~ 109 (293)
T PRK14185 35 AAILVGHDGGSETYVANKVKAC---EECGFKSSL--IRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVI 109 (293)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHH
Confidence 3455565555555544443322 223765543 455555555556666666666766666666664 888888766
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|. -+.+|||+
T Consensus 110 ~~I~---p~KDVDGl 121 (293)
T PRK14185 110 EAID---YRKDVDGF 121 (293)
T ss_pred hccC---cccCcCCC
Confidence 6554 47888887
No 480
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=23.22 E-value=3.4e+02 Score=20.63 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=43.1
Q ss_pred CceEEEEEECCCcc-hHHHHHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHhcCC
Q 031035 39 VPGLAVVIVGGRKD-SQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVM 95 (167)
Q Consensus 39 ~P~Laii~vg~d~a-s~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 95 (167)
....++|++++-.. -..+...-.+.|++.|+.+-.+++... ..++|.-..++.++..
T Consensus 21 g~~fviik~t~G~~~~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~~a~~qa~~fi~~~~~~ 80 (186)
T cd00599 21 GIDFVFIKATEGTTYVDPKFATNRARARAAGLLVGAYHFARPCANAEAQADNFVNTVPRD 80 (186)
T ss_pred CCcEEEEEEeCCCCccChHHHHHHHHHHHCCCceEEEEEecCCCCHHHHHHHHHHHccCc
Confidence 35789999988543 455666788899999999999999744 2356777788887765
No 481
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.19 E-value=2.4e+02 Score=22.56 Aligned_cols=49 Identities=27% Similarity=0.239 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHI 111 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i 111 (167)
+-+|-+| +..+..+++|..++++.. +++.+++. +.+.+||++. |=|.+.
T Consensus 9 ~~dsf~~--nl~~~l~~~g~~~~v~~~--~~~~~~l~--------~~~~~~iIls-gGPg~~ 57 (208)
T PRK05637 9 NHDSFVY--NLVDAFAVAGYKCTVFRN--TVPVEEIL--------AANPDLICLS-PGPGHP 57 (208)
T ss_pred CCcCHHH--HHHHHHHHCCCcEEEEeC--CCCHHHHH--------hcCCCEEEEe-CCCCCH
Confidence 3345444 799999999999988864 34434432 2256787773 545544
No 482
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=23.00 E-value=4.7e+02 Score=22.14 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhccCCCc----eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHHhcCCC
Q 031035 22 RSEIAEEVRLLSEKYGKVP----GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~g~~P----~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~lN~D~ 96 (167)
++.+++++..+++. +..+ +|..+..+++.-. -| .+-|+++|+++..+.= .-..+.++..++|++..+.
T Consensus 59 kd~V~ekid~y~e~-~i~v~pGGtlfe~a~~~~kvd-ey----l~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~- 131 (258)
T COG1809 59 KDQVKEKIDMYKEN-DIYVFPGGTLFEIAYSQDKVD-EY----LNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDE- 131 (258)
T ss_pred HHHHHHHHHHHHHc-CceecCCceEEEeehhcccHH-HH----HHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhc-
Confidence 45688888888765 4432 5888888866533 33 4789999998776642 1124678999999987665
Q ss_pred CCcEEEEeCCCCCCCC
Q 031035 97 DVHGILVQLPLPKHIN 112 (167)
Q Consensus 97 ~V~GIlvq~PLP~~id 112 (167)
|.+|.--+-++..
T Consensus 132 ---Gf~vlsEvGkk~~ 144 (258)
T COG1809 132 ---GFMVLSEVGKKDP 144 (258)
T ss_pred ---ccEEehhhcccCc
Confidence 8999766655554
No 483
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=23.00 E-value=1.2e+02 Score=29.14 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 17 VAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+...++.+.++-+++|++. |+++ ++.-||++.. ..+.|+++||++.-- ...++=.+.+++|.+.
T Consensus 565 l~d~~r~~a~~~i~~L~~~-gi~~---~llTGd~~~~------a~~ia~~lgi~~~~~-----~~p~~K~~~v~~l~~~ 628 (741)
T PRK11033 565 LQDTLRADARQAISELKAL-GIKG---VMLTGDNPRA------AAAIAGELGIDFRAG-----LLPEDKVKAVTELNQH 628 (741)
T ss_pred EecCCchhHHHHHHHHHHC-CCEE---EEEcCCCHHH------HHHHHHHcCCCeecC-----CCHHHHHHHHHHHhcC
Confidence 3456778888888888766 7654 3556776554 455699999974332 2334445566776643
No 484
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=22.99 E-value=3e+02 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=7.3
Q ss_pred HHHHHHhcCCCCCcEEEE
Q 031035 86 ISKVHELNVMPDVHGILV 103 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlv 103 (167)
.+.+++|-+++.|+||+.
T Consensus 57 ~~~~~~l~~~~~v~avig 74 (336)
T cd06326 57 VANTRKLIEDDKVFALFG 74 (336)
T ss_pred HHHHHHHHhhcCcEEEEe
Confidence 334444433334444444
No 485
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.94 E-value=5.6e+02 Score=23.66 Aligned_cols=121 Identities=17% Similarity=0.085 Sum_probs=69.6
Q ss_pred HHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 26 AEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 26 k~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+.+++++. ..+|-+.++-=|-|-+...|+-.-.+.-.+.+.++-++---...-++++.+.+. +.+++=.++--
T Consensus 110 ~~~l~~I~---~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~a~~~V~~il~----~~~~~~~i~eN 182 (463)
T TIGR01319 110 NKDIEAIE---ESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKDIQDEVQEIFD----HADIFYRITDN 182 (463)
T ss_pred HHHHHHHh---hcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHHh----cCCceEEecCC
Confidence 34455553 468999988889999999996666666668888777554333333445555554 44444445544
Q ss_pred CCC--CCCCHHHHHhcC--------CCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 106 PLP--KHINEEKVLGEI--------SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 106 PLP--~~id~~~i~~~I--------~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
=+| .+++..-..++| --.|. ++ ++..- -...+=+||.||++..+.+.-
T Consensus 183 V~P~i~~ln~epaR~~I~~vF~~~Iv~akG---l~-----~i~~~--~~~~i~PTP~AV~~a~~~la~ 240 (463)
T TIGR01319 183 VLPDLDHLNPEAAREAICDIFLKKIVEAKG---LD-----NAEDF--IGEELMPTPAAVFEAAKAIAE 240 (463)
T ss_pred cCCCCCCcCchHHHHHHHHHHHHHHhcCCC---HH-----HHHHH--hCCcccCCHHHHHHHHHHHHh
Confidence 344 345443333322 22222 22 11110 123455799999999887754
No 486
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.94 E-value=3.9e+02 Score=21.17 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=27.9
Q ss_pred ECCCcchHHHHHHHHHHHHHcCceeeeecCCC----CCCHHHHHHHHHHhcCC
Q 031035 47 VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE----QVSEAELISKVHELNVM 95 (167)
Q Consensus 47 vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~----~~~~~el~~~I~~lN~D 95 (167)
+.++++... ...|++.||.+..+.... +..++++.+.+++++-|
T Consensus 34 i~~~~~~~~-----~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 81 (190)
T TIGR00639 34 ISNKPDAYG-----LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVD 81 (190)
T ss_pred EECCccchH-----HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCC
Confidence 455554322 577899999987643221 12256788888887666
No 487
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.87 E-value=2.4e+02 Score=24.23 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=67.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+..+ +.|+...+ +...++-......+...+.-+.-.++.-.+++| +..++..++
T Consensus 35 aii~vg~d~as~~Yv~~k~k~~~---~~Gi~~~~--~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~ 109 (295)
T PRK14174 35 TVIIVGEDPASQVYVRNKAKSCK---EIGMNSTV--IELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVT 109 (295)
T ss_pred EEEEeCCChHHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 45566666566665554443322 23776555 444555555567777777777766666666665 888887666
Q ss_pred HHHHHhcCCCCCcEEEEe-------C---CCCCCCCHHHHHhcCCCCC-CcccCCcc
Q 031035 87 SKVHELNVMPDVHGILVQ-------L---PLPKHINEEKVLGEISLEK-DVDGFHPL 132 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq-------~---PLP~~id~~~i~~~I~P~K-DVDGl~~~ 132 (167)
+. ++-+.+|||+=-. . |-.-.--...+++.+.... |+.|-+-.
T Consensus 110 ~~---I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vv 163 (295)
T PRK14174 110 LA---IDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCV 163 (295)
T ss_pred hc---CCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEE
Confidence 54 5558889998521 0 2111123455666665442 66676543
No 488
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=22.87 E-value=4.8e+02 Score=22.27 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+...+.+++.|+++....+.+. +..++...+.++.... +.|++
T Consensus 165 ~~~l~~~~~~~gi~v~~~~~~~~-~~~d~~~~l~~ik~~~--~iii~ 208 (405)
T cd06385 165 MEGLYMELKKNNITVVDLVFEED-DLINYTTLLQDIKQKG--RVIYV 208 (405)
T ss_pred HHHHHHHHHhCCeEEEEeeccCC-chhhHHHHHHHHhhcc--eEEEE
Confidence 56778888999999887776532 3567777777775543 55555
No 489
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=22.84 E-value=2.4e+02 Score=22.06 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee
Q 031035 27 EEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 27 ~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+..+.|++.-..+=+++++|-|. .|.-.|.+.|++.|.-..++
T Consensus 28 eDf~~L~~~V~v~GkIvi~RyG~-----~~RG~Kv~~A~~~GA~GviI 70 (153)
T cd02131 28 EDLRRIRDNMNVTNQIALLKLGQ-----APLLYKLSLLEEAGFGGVLL 70 (153)
T ss_pred HHHHHHHhCCCccceEEEEeccC-----cchHHHHHHHHHCCCeEEEE
Confidence 33444543234566899999994 57778999999999876655
No 490
>PRK06756 flavodoxin; Provisional
Probab=22.78 E-value=3e+02 Score=20.14 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=40.5
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
++.||.....-.++..++...+.+++.|+.++.+.+.+.... ..+. +-++|++-.|--
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~-------~~~~---~~d~vi~gspt~ 60 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEA-------SILE---QYDGIILGAYTW 60 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCH-------HHHh---cCCeEEEEeCCC
Confidence 467777777777888888888889999999988877543221 1222 235888887654
No 491
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=22.77 E-value=4.2e+02 Score=21.48 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred CceEEEEEEC--------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 39 VPGLAVVIVG--------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 39 ~P~Laii~vg--------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
...+|+|.-+ ..+++..=++...+..+++|+++..+ .+.+.+++.+.|+++-+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~---~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVK---NNLTAEEILEELKEFAS 68 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEe---CCCCHHHHHHHHHHHHh
Confidence 4556666544 33456777889999999999988766 47788999999998874
No 492
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=22.70 E-value=4.4e+02 Score=23.36 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcC-CCCCcEEEE
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNV-MPDVHGILV 103 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~-D~~V~GIlv 103 (167)
-+.++|...++ -...-.+.-.+.+++.|+...... ++.+.+..++...+.++.+ ++++--|++
T Consensus 187 ~~Vaii~~~~~-yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~ 251 (472)
T cd06374 187 TYVSAVHTEGN-YGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVC 251 (472)
T ss_pred cEEEEEEecch-HHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEE
Confidence 35777766544 345556677888899998876433 4544556777778877765 455544554
No 493
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=22.65 E-value=4.7e+02 Score=23.79 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=52.4
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeee-----------------cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-----------------DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-----------------~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-.++.++.+.-|..|+....+..+++|++++.. ..|.|.|..-+.-.--.+. ++++||-+.
T Consensus 185 ~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~~~~i~~g~~~~~~~~~VpgD~SSAafflaAaai~--~~~~~i~~~ 262 (428)
T COG0128 185 GTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGYRFYIPGGQKLTPGDYDVPGDYSSAAFFLAAAAIT--PRSTGITLK 262 (428)
T ss_pred CcEEEecCccCCccHHHHHHHHHHHcCCeEEeeccEEEECCCccccCceEEcCCChhhHHHHHHHHHhc--CCCceeeec
Confidence 456677888999999999999999999988764 2344556666666666665 888888888
Q ss_pred CCCCCCCCH
Q 031035 105 LPLPKHINE 113 (167)
Q Consensus 105 ~PLP~~id~ 113 (167)
-+.|...+.
T Consensus 263 ~v~~~~~~~ 271 (428)
T COG0128 263 NVQPNPTDK 271 (428)
T ss_pred cCCcCcchh
Confidence 887644443
No 494
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=22.63 E-value=2.5e+02 Score=24.14 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=52.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC--CCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL--PEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~ 86 (167)
+.++-|..-|.++.-+-|.+-.+ + -|+... .+...++....--.+...+.-+.-.++...++| |+..+++.++
T Consensus 34 avilvgddpaS~~YV~~K~k~~~--~-iGi~~~--~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il 108 (283)
T COG0190 34 AVILVGDDPASQVYVRSKKKAAE--E-IGIASE--LYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLL 108 (283)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH--H-cCCeeE--EEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHH
Confidence 56788888888887665554433 2 265433 344444444444455555555555666666665 7788888776
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|.- +.+|||+
T Consensus 109 ~~I~p---~KDVDG~ 120 (283)
T COG0190 109 QAIDP---EKDVDGF 120 (283)
T ss_pred hhcCc---CCCcccc
Confidence 66654 7788885
No 495
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.59 E-value=4.2e+02 Score=22.74 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=63.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|.....+.+.+.. ++.|+.-.+ +...++-......+...+.-+.-.++...+++| +..++.+++
T Consensus 42 aii~vg~d~aS~~Yv~~k~k~~---~~~Gi~~~~--~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~ 116 (287)
T PRK14176 42 ATILVGDDPASKMYVRLKHKAC---ERVGIRAED--QFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAM 116 (287)
T ss_pred EEEEECCCcchHHHHHHHHHHH---HHcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 4455565555555554444332 223765544 444555555556666666666666666666654 888888776
Q ss_pred HHHHHhcCCCCCcEEEEe--------CCCCCCCCHHHHHhcCCCCC-CcccCCc
Q 031035 87 SKVHELNVMPDVHGILVQ--------LPLPKHINEEKVLGEISLEK-DVDGFHP 131 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq--------~PLP~~id~~~i~~~I~P~K-DVDGl~~ 131 (167)
+.| +-+.+|||+=-. .|..-.--...+++.+.... |+.|-+-
T Consensus 117 ~~I---~p~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~i~l~Gk~v 167 (287)
T PRK14176 117 EAI---DPAKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYGVDIEGKNA 167 (287)
T ss_pred hcc---CccccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcCCCCCCCEE
Confidence 555 447889987421 11111123455666665442 5666543
No 496
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=22.55 E-value=2e+02 Score=24.11 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCCCC-----HHHHHhcCCCCCCc--ccCCcccH-HHhhccC-------CCC-CCCCchHHHHHHHhhh
Q 031035 97 DVHGILVQLPLPKHIN-----EEKVLGEISLEKDV--DGFHPLNI-GKLAMKG-------RDP-LFLPCTPKAIILYSCL 160 (167)
Q Consensus 97 ~V~GIlvq~PLP~~id-----~~~i~~~I~P~KDV--DGl~~~Nl-G~l~~g~-------~~~-~~~PcTp~avi~lL~~ 160 (167)
..-|+||| .||.+-+ -++....+++-+|. +|+++..+ .+||.+. ..- .+=+|+..-+...|.+
T Consensus 167 ~AgG~liQ-~LP~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~e~ll~~lf~~~~~~i~~~~~v~f~C~CS~er~~~~L~~ 245 (275)
T cd00498 167 AAGGLLLQ-VLPGADEEDIDAWEKVIKLMPTVSALELLGLSPEELLYRLFHEEEVRILEKQPVRFRCDCSRERVAAALLT 245 (275)
T ss_pred EEEEEEEE-eCcCCChhhHHHHHHHHHhCCCccHHHHcCCCHHHHHHHHhCCCCceeccCCCcCeeCCCCHHHHHHHHHh
Confidence 45688888 4786521 12344455665553 45666666 6666542 011 2349999999999998
Q ss_pred ccCCC
Q 031035 161 INCGN 165 (167)
Q Consensus 161 ~~~~~ 165 (167)
+|-.+
T Consensus 246 Lg~~E 250 (275)
T cd00498 246 LGKEE 250 (275)
T ss_pred CCHHH
Confidence 87543
No 497
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.53 E-value=2.5e+02 Score=24.10 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=53.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.|+-|..-|.....+.+.+..+ +.|+.-.+ +...++-......+...+.-+.-.++.-.+++| +..++..++
T Consensus 30 aiI~vg~d~as~~Yv~~k~k~~~---~~Gi~~~~--~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~ 104 (287)
T PRK14181 30 AVVLIGNDPASEVYVGMKVKKAT---DLGMVSKA--HRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAIL 104 (287)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCEEEE--EECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHH
Confidence 44566655566655554443322 23765444 455666555556667777777777777777765 888887666
Q ss_pred HHHHHhcCCCCCcEEE
Q 031035 87 SKVHELNVMPDVHGIL 102 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIl 102 (167)
+.| +-+.+|||+=
T Consensus 105 ~~I---~p~KDVDGl~ 117 (287)
T PRK14181 105 QAI---SPDKDVDGLH 117 (287)
T ss_pred hcc---CcccCcccCC
Confidence 555 4578888874
No 498
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=22.46 E-value=93 Score=24.38 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHhcCC---CCCcEEEE--eCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHH
Q 031035 79 QVSEAELISKVHELNVM---PDVHGILV--QLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKA 153 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D---~~V~GIlv--q~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~a 153 (167)
+.+.+|+.+.|-+|.+. |+.=|+++ |+++| ||--++-.++.+++. ..++.|--|+-
T Consensus 27 ~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip----------------~Vk~vtG~ki~~iLk---~~gl~p~iPED 87 (151)
T PRK08561 27 DYSPEEIEELVVELAKQGYSPSMIGIILRDQYGIP----------------DVKLITGKKITEILE---ENGLAPEIPED 87 (151)
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCC----------------ceeeeccchHHHHHH---HcCCCCCCcHH
Confidence 46789999999999876 45667776 66666 555566677888776 36788888887
Q ss_pred HHHHhhhc
Q 031035 154 IILYSCLI 161 (167)
Q Consensus 154 vi~lL~~~ 161 (167)
...|.+.+
T Consensus 88 L~~L~~ri 95 (151)
T PRK08561 88 LRNLIKKA 95 (151)
T ss_pred HHHHHHHH
Confidence 77776653
No 499
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=22.40 E-value=3.5e+02 Score=23.95 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchH-HHHHHHHHHHHH-cCceeeeecC----------CCCCCHHHHHHHHH
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQ-SYVSMKRKACAE-VGIKSFDIDL----------PEQVSEAELISKVH 90 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~-~Y~~~k~k~~~~-~Gi~~~~~~l----------~~~~~~~el~~~I~ 90 (167)
++|++++++..+. |. +=+.++-|.+|.-. .|-....+..++ .. +...+-| ....+.+|+++.++
T Consensus 93 eeI~~~~~~~~~~-G~--~Evli~gG~~p~~~~~y~~~~~~~ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk 168 (370)
T COG1060 93 EEILEEVREAVKR-GI--TEVLIVGGEHPELSLEYYEELFRTIKEEFP-DLHIHALSAGEILFLAREGGLSYEEVLKRLK 168 (370)
T ss_pred HHHHHHHHHHHHc-CC--eEEEEecCcCCCcchHHHHHHHHHHHHhCc-chhhcccCHHHhHHHHhccCCCHHHHHHHHH
Confidence 5667777777655 54 45667889988644 466655555554 11 1111111 33456788888887
Q ss_pred HhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCC
Q 031035 91 ELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124 (167)
Q Consensus 91 ~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~K 124 (167)
. ...+.+.... ..+..+++...+.|.|
T Consensus 169 ~----aGldsmpg~~---aeil~e~vr~~~~p~K 195 (370)
T COG1060 169 E----AGLDSMPGGG---AEILSEEVRKIHCPPK 195 (370)
T ss_pred H----cCCCcCcCcc---eeechHHHHHhhCCCC
Confidence 4 4445544432 3455666666666554
No 500
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=22.40 E-value=3.1e+02 Score=21.72 Aligned_cols=64 Identities=14% Similarity=-0.034 Sum_probs=34.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC--HHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--EAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
++.+|....++++ +..+.....+.+-+-+++.++|.+.-. .-++....++|-+ -|.|++|.|+-
T Consensus 7 kiLiI~aHP~~~~-S~~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~---aD~iV~~fPl~ 72 (184)
T PRK04930 7 KVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLRE---HDVIVFQHPLY 72 (184)
T ss_pred EEEEEECCCCccc-CHHHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHh---CCEEEEEcCcc
Confidence 5666666666642 223333333333345666666544311 1234444555544 37999999984
Done!