Query 031035
Match_columns 167
No_of_seqs 148 out of 1017
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4u_A Bifunctional protein fo 100.0 1.5E-57 5E-62 385.3 16.6 156 7-164 21-176 (303)
2 1b0a_A Protein (fold bifunctio 100.0 2.3E-56 7.9E-61 376.2 17.2 155 7-163 1-155 (288)
3 1a4i_A Methylenetetrahydrofola 100.0 2.9E-55 9.8E-60 371.5 16.1 157 7-163 2-161 (301)
4 4a26_A Putative C-1-tetrahydro 100.0 7.5E-55 2.6E-59 368.9 17.2 157 7-163 4-161 (300)
5 4a5o_A Bifunctional protein fo 100.0 7.9E-55 2.7E-59 366.6 17.2 155 7-163 3-157 (286)
6 2c2x_A Methylenetetrahydrofola 100.0 8.2E-55 2.8E-59 365.7 15.7 152 9-163 3-154 (281)
7 3ngx_A Bifunctional protein fo 100.0 4.1E-54 1.4E-58 360.7 15.4 146 10-162 2-147 (276)
8 3l07_A Bifunctional protein fo 100.0 1.2E-53 4.1E-58 359.4 16.0 152 10-163 5-157 (285)
9 3p2o_A Bifunctional protein fo 100.0 1.4E-53 4.9E-58 358.9 15.8 152 9-163 4-156 (285)
10 1edz_A 5,10-methylenetetrahydr 100.0 3.4E-52 1.2E-56 355.7 13.6 156 7-165 3-166 (320)
11 1nvt_A Shikimate 5'-dehydrogen 98.4 2.1E-08 7.1E-13 82.8 -1.3 105 46-163 16-124 (287)
12 2d5c_A AROE, shikimate 5-dehyd 98.3 5.6E-08 1.9E-12 79.0 -0.3 104 46-163 6-113 (263)
13 1nyt_A Shikimate 5-dehydrogena 98.3 5.3E-08 1.8E-12 79.9 -1.6 104 47-163 7-115 (271)
14 2hk9_A Shikimate dehydrogenase 98.2 2.6E-07 8.8E-12 75.9 1.3 106 45-163 16-125 (275)
15 1p77_A Shikimate 5-dehydrogena 97.7 2.9E-06 9.8E-11 69.6 -1.2 93 59-163 19-115 (272)
16 2egg_A AROE, shikimate 5-dehyd 97.6 1.4E-05 4.9E-10 66.4 0.9 103 47-162 29-135 (297)
17 3dbi_A Sugar-binding transcrip 94.3 0.26 8.8E-06 39.8 9.3 88 10-104 22-126 (338)
18 3fbt_A Chorismate mutase and s 93.6 0.021 7.3E-07 47.2 1.5 81 47-133 11-93 (282)
19 1jye_A Lactose operon represso 93.6 0.33 1.1E-05 39.6 8.7 93 10-108 22-129 (349)
20 1jx6_A LUXP protein; protein-l 93.2 0.48 1.6E-05 38.1 8.9 86 17-103 14-110 (342)
21 1qpz_A PURA, protein (purine n 93.2 0.26 8.9E-06 39.9 7.4 93 10-105 19-122 (340)
22 2hsg_A Glucose-resistance amyl 93.0 0.37 1.3E-05 38.7 7.9 89 10-105 21-124 (332)
23 2o20_A Catabolite control prot 92.1 0.43 1.5E-05 38.4 7.3 89 10-105 24-127 (332)
24 3h5o_A Transcriptional regulat 91.7 1.3 4.5E-05 35.6 9.8 89 10-105 23-126 (339)
25 3ksm_A ABC-type sugar transpor 90.5 0.68 2.3E-05 35.6 6.7 66 40-105 1-67 (276)
26 3rg8_A Phosphoribosylaminoimid 89.7 2.3 7.8E-05 32.4 8.8 63 40-104 3-65 (159)
27 3jvd_A Transcriptional regulat 89.7 0.72 2.5E-05 37.3 6.4 89 10-106 25-128 (333)
28 3ctp_A Periplasmic binding pro 89.6 1.1 3.7E-05 36.0 7.4 86 10-102 21-121 (330)
29 3bil_A Probable LACI-family tr 88.9 1 3.5E-05 36.7 6.8 89 10-105 27-130 (348)
30 3h5t_A Transcriptional regulat 88.5 0.98 3.4E-05 36.8 6.5 85 10-104 28-135 (366)
31 3kjx_A Transcriptional regulat 88.1 3.5 0.00012 33.1 9.6 88 10-104 29-131 (344)
32 3tnl_A Shikimate dehydrogenase 86.0 0.34 1.2E-05 40.5 2.3 81 46-132 42-124 (315)
33 3o1i_D Periplasmic protein TOR 86.0 3.3 0.00011 32.1 8.0 72 37-109 3-75 (304)
34 4grd_A N5-CAIR mutase, phospho 85.9 4.7 0.00016 31.1 8.5 72 37-111 10-81 (173)
35 3e3m_A Transcriptional regulat 85.9 2.6 8.7E-05 34.2 7.5 88 10-104 31-133 (355)
36 3gbv_A Putative LACI-family tr 84.8 3.9 0.00013 31.6 7.9 69 37-106 6-78 (304)
37 3h75_A Periplasmic sugar-bindi 84.7 3.3 0.00011 33.3 7.6 64 39-104 3-69 (350)
38 3oow_A Phosphoribosylaminoimid 84.7 6 0.0002 30.3 8.5 63 39-104 5-67 (166)
39 1xmp_A PURE, phosphoribosylami 83.3 3.9 0.00013 31.5 7.0 64 37-103 9-72 (170)
40 2amj_A Modulator of drug activ 83.2 5.2 0.00018 30.6 7.9 65 40-110 13-83 (204)
41 2ebu_A Replication factor C su 82.9 2.1 7.1E-05 30.6 5.0 66 22-100 39-106 (112)
42 3brq_A HTH-type transcriptiona 82.4 6.6 0.00022 30.2 8.2 66 37-105 17-85 (296)
43 3brs_A Periplasmic binding pro 81.6 6.6 0.00022 30.2 8.0 68 38-106 4-74 (289)
44 3k9c_A Transcriptional regulat 81.5 8 0.00027 30.0 8.5 66 37-106 10-75 (289)
45 3kuu_A Phosphoribosylaminoimid 81.3 5.3 0.00018 30.8 7.1 64 37-103 10-73 (174)
46 3iwt_A 178AA long hypothetical 80.9 5 0.00017 30.0 6.8 70 37-107 13-91 (178)
47 1dbq_A Purine repressor; trans 80.6 4.8 0.00016 31.0 6.8 67 37-106 5-72 (289)
48 3lft_A Uncharacterized protein 80.4 6.5 0.00022 30.8 7.7 64 40-104 3-69 (295)
49 3l6u_A ABC-type sugar transpor 80.4 10 0.00035 29.1 8.7 69 37-108 6-75 (293)
50 3rot_A ABC sugar transporter, 80.3 7.4 0.00025 30.3 7.9 66 40-106 4-70 (297)
51 3trh_A Phosphoribosylaminoimid 80.2 5 0.00017 30.8 6.6 62 39-103 6-67 (169)
52 2k6g_A Replication factor C su 80.0 4 0.00014 28.8 5.6 57 22-91 49-107 (109)
53 3ors_A N5-carboxyaminoimidazol 79.9 6.3 0.00021 30.1 7.0 62 39-103 3-64 (163)
54 3m9w_A D-xylose-binding peripl 79.7 9.7 0.00033 29.8 8.5 68 40-110 3-71 (313)
55 3k4h_A Putative transcriptiona 79.3 8.6 0.00029 29.6 7.9 65 37-104 6-76 (292)
56 4b4k_A N5-carboxyaminoimidazol 79.1 11 0.00037 29.3 8.2 63 39-104 22-84 (181)
57 1u11_A PURE (N5-carboxyaminoim 79.0 7.1 0.00024 30.3 7.2 62 39-103 21-82 (182)
58 3jy6_A Transcriptional regulat 78.6 15 0.00053 28.0 9.2 68 37-107 5-73 (276)
59 2qu7_A Putative transcriptiona 78.2 7 0.00024 30.2 7.1 67 37-106 6-72 (288)
60 3p45_A Caspase-6; protease, hu 77.7 10 0.00036 29.1 7.8 55 39-96 43-107 (179)
61 3lkv_A Uncharacterized conserv 77.3 15 0.0005 29.3 9.0 60 39-103 140-199 (302)
62 3hs3_A Ribose operon repressor 77.2 13 0.00044 28.6 8.4 66 37-105 8-75 (277)
63 2x7x_A Sensor protein; transfe 77.1 7.7 0.00026 30.8 7.2 65 37-104 4-69 (325)
64 3qk7_A Transcriptional regulat 76.9 14 0.00049 28.6 8.7 66 37-106 4-74 (294)
65 3e61_A Putative transcriptiona 76.9 8.6 0.00029 29.4 7.2 65 37-104 6-71 (277)
66 2fep_A Catabolite control prot 76.7 9.5 0.00033 29.6 7.6 66 37-105 14-80 (289)
67 3lwz_A 3-dehydroquinate dehydr 76.6 7.7 0.00026 29.3 6.5 43 57-104 38-80 (153)
68 1o4v_A Phosphoribosylaminoimid 76.4 23 0.00077 27.5 9.3 63 38-103 12-74 (183)
69 1gqo_A Dehydroquinase; dehydra 75.0 8.7 0.0003 28.7 6.4 44 56-104 30-73 (143)
70 3lp6_A Phosphoribosylaminoimid 74.8 11 0.00036 29.1 7.0 64 37-103 5-68 (174)
71 3c3k_A Alanine racemase; struc 74.5 15 0.00052 28.2 8.2 65 37-104 6-71 (285)
72 1req_A Methylmalonyl-COA mutas 74.1 11 0.00038 35.1 8.2 69 22-93 579-647 (727)
73 1uqr_A 3-dehydroquinate dehydr 74.0 9.1 0.00031 29.0 6.4 44 56-104 31-74 (154)
74 4f2d_A L-arabinose isomerase; 74.0 4.5 0.00015 35.8 5.4 38 71-108 46-83 (500)
75 3rjz_A N-type ATP pyrophosphat 73.8 6.6 0.00023 31.4 5.9 56 37-92 28-89 (237)
76 2uyg_A 3-dehydroquinate dehydr 73.4 10 0.00035 28.5 6.5 46 55-104 28-73 (149)
77 3l49_A ABC sugar (ribose) tran 73.4 12 0.0004 28.7 7.2 63 39-104 5-68 (291)
78 2pjk_A 178AA long hypothetical 73.4 15 0.00053 27.7 7.7 66 37-106 13-90 (178)
79 3uug_A Multiple sugar-binding 73.3 12 0.00041 29.4 7.4 63 40-105 4-67 (330)
80 2xij_A Methylmalonyl-COA mutas 73.2 12 0.00043 34.9 8.3 70 21-93 586-655 (762)
81 3egc_A Putative ribose operon 73.0 17 0.00059 27.9 8.1 67 37-106 6-73 (291)
82 3l4e_A Uncharacterized peptida 73.0 15 0.00051 28.4 7.7 58 39-103 27-85 (206)
83 3rpe_A MDAB, modulator of drug 72.7 10 0.00035 29.8 6.7 66 38-109 24-95 (218)
84 3d8u_A PURR transcriptional re 72.6 20 0.00067 27.2 8.3 64 40-106 4-68 (275)
85 1y5e_A Molybdenum cofactor bio 72.0 22 0.00074 26.4 8.2 65 38-106 12-81 (169)
86 2qh8_A Uncharacterized protein 72.0 10 0.00036 29.8 6.7 66 38-104 7-76 (302)
87 3huu_A Transcription regulator 71.5 15 0.0005 28.7 7.5 66 37-105 20-91 (305)
88 2ywx_A Phosphoribosylaminoimid 71.2 23 0.00077 26.8 8.0 51 43-94 2-52 (157)
89 8abp_A L-arabinose-binding pro 70.2 15 0.00052 28.3 7.3 62 40-105 3-65 (306)
90 3bbl_A Regulatory protein of L 68.7 11 0.00038 29.1 6.1 66 38-106 3-73 (287)
91 3fni_A Putative diflavin flavo 68.7 31 0.001 25.0 8.4 65 39-109 4-68 (159)
92 1byk_A Protein (trehalose oper 68.3 28 0.00097 26.0 8.3 62 41-105 4-66 (255)
93 2fqx_A Membrane lipoprotein TM 68.3 23 0.0008 28.3 8.2 64 39-106 4-71 (318)
94 1qtn_A Caspase-8; apoptosis, d 68.0 22 0.00075 26.6 7.4 44 49-95 49-92 (164)
95 3o74_A Fructose transport syst 67.7 36 0.0012 25.5 9.8 64 41-107 4-68 (272)
96 1pyo_A Caspase-2; apoptosis, c 67.4 28 0.00094 26.2 7.9 55 37-94 30-94 (167)
97 2l69_A Rossmann 2X3 fold prote 67.2 30 0.001 24.4 8.0 51 23-79 36-86 (134)
98 1h05_A 3-dehydroquinate dehydr 67.1 7.7 0.00026 29.1 4.6 44 56-104 32-75 (146)
99 3lft_A Uncharacterized protein 67.1 36 0.0012 26.4 8.9 60 40-104 134-193 (295)
100 2rjo_A Twin-arginine transloca 66.7 16 0.00056 28.8 6.9 66 37-104 3-70 (332)
101 2fn9_A Ribose ABC transporter, 65.6 34 0.0012 26.1 8.4 63 41-106 4-67 (290)
102 3f2v_A General stress protein 65.3 5.6 0.00019 30.5 3.6 66 41-109 3-70 (192)
103 1gtz_A 3-dehydroquinate dehydr 65.3 8.5 0.00029 29.2 4.5 44 56-104 36-79 (156)
104 3clk_A Transcription regulator 65.1 22 0.00076 27.3 7.3 67 37-106 6-74 (290)
105 2iks_A DNA-binding transcripti 64.8 44 0.0015 25.6 9.0 67 37-106 18-85 (293)
106 1gud_A ALBP, D-allose-binding 64.1 29 0.00098 26.7 7.7 64 41-105 3-67 (288)
107 3op6_A Uncharacterized protein 63.9 14 0.00049 26.7 5.6 61 58-121 5-76 (152)
108 1tjy_A Sugar transport protein 63.8 25 0.00085 27.7 7.4 66 39-106 3-69 (316)
109 3hcw_A Maltose operon transcri 63.5 19 0.00064 27.9 6.5 65 37-104 5-75 (295)
110 3miz_A Putative transcriptiona 63.2 33 0.0011 26.5 7.9 66 37-105 11-78 (301)
111 2vk2_A YTFQ, ABC transporter p 63.0 21 0.00073 27.7 6.8 62 41-105 4-66 (306)
112 3tem_A Ribosyldihydronicotinam 62.8 20 0.00068 27.9 6.5 67 41-110 3-105 (228)
113 1mkz_A Molybdenum cofactor bio 62.5 35 0.0012 25.3 7.7 66 38-107 9-79 (172)
114 2ql9_A Caspase-7; cysteine pro 61.9 39 0.0013 25.6 7.9 55 39-96 43-107 (173)
115 3gyb_A Transcriptional regulat 61.7 17 0.00059 27.7 5.9 62 37-102 3-65 (280)
116 3d02_A Putative LACI-type tran 61.5 29 0.001 26.6 7.3 63 40-104 5-68 (303)
117 2pbq_A Molybdenum cofactor bio 61.5 19 0.00066 27.0 6.0 66 38-107 4-78 (178)
118 2q62_A ARSH; alpha/beta, flavo 61.1 25 0.00085 27.8 6.9 81 38-121 33-125 (247)
119 1l7b_A DNA ligase; BRCT, autos 61.0 7.7 0.00026 26.4 3.3 70 10-95 13-84 (92)
120 2rgy_A Transcriptional regulat 61.0 39 0.0013 25.9 8.0 67 37-106 6-76 (290)
121 3n8k_A 3-dehydroquinate dehydr 60.9 11 0.00039 28.9 4.6 58 57-120 59-116 (172)
122 4gi5_A Quinone reductase; prot 60.5 24 0.00083 28.6 6.9 65 41-108 24-123 (280)
123 3kke_A LACI family transcripti 60.4 56 0.0019 25.2 8.9 66 38-106 14-80 (303)
124 3u80_A 3-dehydroquinate dehydr 59.5 12 0.00041 28.2 4.4 57 57-119 35-91 (151)
125 2qh8_A Uncharacterized protein 59.4 56 0.0019 25.4 8.7 60 40-104 141-200 (302)
126 3od5_A Caspase-6; caspase doma 59.3 29 0.00098 28.1 7.1 54 39-95 20-83 (278)
127 2ioy_A Periplasmic sugar-bindi 59.2 38 0.0013 25.9 7.6 61 41-104 3-64 (283)
128 2lnd_A De novo designed protei 59.2 40 0.0014 23.1 8.5 60 24-92 39-98 (112)
129 2hqb_A Transcriptional activat 59.1 34 0.0012 26.9 7.5 64 38-104 4-70 (296)
130 3tb6_A Arabinose metabolism tr 58.7 29 0.00099 26.4 6.8 64 40-106 16-80 (298)
131 2h3h_A Sugar ABC transporter, 58.7 48 0.0017 25.7 8.2 51 56-108 18-68 (313)
132 2fvy_A D-galactose-binding per 58.6 25 0.00085 27.0 6.4 61 41-104 4-66 (309)
133 4ehd_A Caspase-3; caspase, apo 57.4 49 0.0017 26.7 8.2 54 39-95 43-106 (277)
134 2dri_A D-ribose-binding protei 57.1 60 0.0021 24.5 9.0 61 41-104 3-64 (271)
135 2dko_A Caspase-3; low barrier 57.0 21 0.00074 26.1 5.5 55 39-96 15-79 (146)
136 3g1w_A Sugar ABC transporter; 56.7 28 0.00096 26.8 6.5 64 41-106 6-70 (305)
137 2c4w_A 3-dehydroquinate dehydr 56.4 23 0.00077 27.3 5.6 46 55-104 38-85 (176)
138 3vot_A L-amino acid ligase, BL 55.9 23 0.00078 29.5 6.1 58 39-102 5-80 (425)
139 3cs3_A Sugar-binding transcrip 55.5 17 0.00057 27.8 4.9 60 37-106 6-66 (277)
140 1jlj_A Gephyrin; globular alph 55.4 26 0.00087 26.7 5.9 66 38-107 13-88 (189)
141 3gv0_A Transcriptional regulat 55.3 27 0.00093 26.8 6.1 65 37-105 6-74 (288)
142 4es1_A BH0342 protein; ferredo 54.7 5.5 0.00019 27.8 1.7 58 54-112 21-80 (100)
143 1ivn_A Thioesterase I; hydrola 54.4 56 0.0019 23.3 10.2 91 39-139 62-166 (190)
144 1pdo_A Mannose permease; phosp 54.0 34 0.0012 24.3 6.0 83 56-138 12-98 (135)
145 3k9c_A Transcriptional regulat 53.7 72 0.0025 24.4 9.2 67 37-104 125-192 (289)
146 3kip_A 3-dehydroquinase, type 53.4 27 0.00093 26.7 5.6 45 56-104 44-90 (167)
147 2h31_A Multifunctional protein 53.4 38 0.0013 29.4 7.2 61 42-104 267-328 (425)
148 3pzy_A MOG; ssgcid, seattle st 53.3 22 0.00077 26.4 5.1 63 38-105 6-74 (164)
149 3loq_A Universal stress protei 53.2 71 0.0024 24.7 8.3 77 12-95 177-253 (294)
150 3p94_A GDSL-like lipase; serin 52.2 32 0.0011 24.6 5.8 92 38-139 73-191 (204)
151 3g85_A Transcriptional regulat 51.4 11 0.00039 28.8 3.3 66 37-105 9-76 (289)
152 3gyb_A Transcriptional regulat 50.9 77 0.0026 23.8 8.8 63 41-104 120-183 (280)
153 3rfq_A Pterin-4-alpha-carbinol 50.8 34 0.0012 26.1 5.9 87 37-129 28-122 (185)
154 1wi9_A Protein C20ORF116 homol 50.5 8.6 0.00029 25.5 2.1 23 81-103 34-56 (72)
155 2is8_A Molybdopterin biosynthe 50.4 26 0.00088 25.8 5.0 63 40-106 2-71 (164)
156 2hsj_A Putative platelet activ 49.1 72 0.0024 23.0 7.5 97 37-139 83-205 (214)
157 3luc_A Protein argonaute-2; MI 48.9 39 0.0013 24.1 5.7 19 54-72 90-108 (138)
158 2fp3_A Caspase NC; apoptosis, 48.4 88 0.003 25.7 8.5 55 39-96 60-122 (316)
159 3hp4_A GDSL-esterase; psychrot 48.3 68 0.0023 22.5 8.3 89 39-139 66-170 (185)
160 2j32_A Caspase-3; Pro-caspase3 48.0 99 0.0034 24.3 8.8 55 39-96 15-79 (250)
161 1nw9_B Caspase 9, apoptosis-re 47.1 1.1E+02 0.0037 24.4 8.8 55 38-95 19-83 (277)
162 2h0a_A TTHA0807, transcription 46.0 45 0.0016 25.1 6.0 55 49-106 10-64 (276)
163 1fy2_A Aspartyl dipeptidase; s 46.0 71 0.0024 24.6 7.2 39 39-77 31-70 (229)
164 3ebv_A Chinitase A; chitinase 45.9 51 0.0018 26.8 6.6 71 24-95 63-139 (302)
165 1m72_A Caspase-1; caspase, cys 45.4 1.1E+02 0.0037 24.5 8.4 53 40-95 32-93 (272)
166 3fz4_A Putative arsenate reduc 44.9 40 0.0014 23.5 5.1 40 54-93 13-53 (120)
167 3g1w_A Sugar ABC transporter; 44.8 1E+02 0.0035 23.5 8.7 66 39-104 127-194 (305)
168 1di6_A MOGA, molybdenum cofact 44.4 54 0.0018 25.1 6.2 64 39-106 3-75 (195)
169 1sqs_A Conserved hypothetical 44.2 94 0.0032 23.7 7.6 66 42-110 4-92 (242)
170 2hpv_A FMN-dependent NADH-azor 43.9 61 0.0021 23.9 6.3 67 41-110 3-107 (208)
171 3ha2_A NADPH-quinone reductase 42.9 37 0.0013 25.4 4.9 49 55-109 15-63 (177)
172 2vzf_A NADH-dependent FMN redu 42.9 49 0.0017 24.5 5.6 66 52-120 17-92 (197)
173 3gx1_A LIN1832 protein; APC633 42.9 49 0.0017 23.5 5.4 94 40-138 5-100 (130)
174 3h5i_A Response regulator/sens 42.5 73 0.0025 21.2 6.4 68 42-120 6-73 (140)
175 2jwk_A Protein TOLR; periplasm 42.3 48 0.0017 20.4 4.8 45 23-70 30-74 (74)
176 3zyw_A Glutaredoxin-3; metal b 41.9 79 0.0027 21.4 7.4 73 24-103 4-77 (111)
177 1pea_A Amidase operon; gene re 41.2 69 0.0023 25.6 6.7 47 57-103 28-81 (385)
178 3ufx_B Succinyl-COA synthetase 40.7 24 0.00081 30.1 3.9 46 61-106 264-310 (397)
179 1xmx_A Hypothetical protein VC 40.6 1.2E+02 0.004 25.5 8.2 53 37-91 25-77 (385)
180 2h54_A Caspase-1; allosteric s 40.5 63 0.0022 24.3 5.9 52 40-94 43-101 (178)
181 1yzf_A Lipase/acylhydrolase; s 40.1 42 0.0014 23.6 4.7 40 38-77 66-113 (195)
182 3l78_A Regulatory protein SPX; 40.0 56 0.0019 22.6 5.2 38 54-91 10-48 (120)
183 3gkx_A Putative ARSC family re 39.9 58 0.002 22.7 5.3 41 53-93 13-54 (120)
184 4fe7_A Xylose operon regulator 39.3 61 0.0021 26.6 6.2 60 37-103 23-82 (412)
185 1ydg_A Trp repressor binding p 39.3 50 0.0017 24.4 5.2 40 40-79 7-46 (211)
186 3kbq_A Protein TA0487; structu 39.2 64 0.0022 24.3 5.8 77 39-120 3-88 (172)
187 2e4u_A Metabotropic glutamate 39.2 1.1E+02 0.0038 26.2 8.0 65 41-106 188-253 (555)
188 3luc_A Protein argonaute-2; MI 39.1 17 0.00059 26.1 2.4 66 41-106 13-86 (138)
189 4hf7_A Putative acylhydrolase; 38.8 91 0.0031 22.8 6.6 97 38-139 77-197 (209)
190 2zki_A 199AA long hypothetical 38.8 57 0.002 23.7 5.4 62 41-110 6-83 (199)
191 3rot_A ABC sugar transporter, 38.6 1.3E+02 0.0044 22.9 10.4 62 40-104 131-195 (297)
192 2nn3_C Caspase-1; cysteine pro 38.6 1.2E+02 0.0042 24.8 7.8 54 39-95 59-121 (310)
193 3s99_A Basic membrane lipoprot 38.6 50 0.0017 27.4 5.5 64 38-104 25-93 (356)
194 3fvw_A Putative NAD(P)H-depend 38.3 82 0.0028 23.3 6.3 77 41-121 4-94 (192)
195 3lcm_A SMU.1420, putative oxid 38.1 71 0.0024 23.7 5.9 65 42-110 3-86 (196)
196 3lkv_A Uncharacterized conserv 38.1 1.2E+02 0.0042 23.7 7.6 66 37-103 6-75 (302)
197 2h0a_A TTHA0807, transcription 37.7 1.2E+02 0.0043 22.5 7.9 73 30-104 107-187 (276)
198 1fui_A L-fucose isomerase; ket 37.6 81 0.0028 28.5 7.0 72 37-108 4-90 (591)
199 1d4a_A DT-diaphorase, quinone 37.4 85 0.0029 24.7 6.5 67 41-110 4-106 (273)
200 3ks9_A Mglur1, metabotropic gl 36.9 1.4E+02 0.0048 25.3 8.3 64 41-105 199-264 (496)
201 3rdw_A Putative arsenate reduc 36.8 60 0.0021 22.6 5.0 42 53-94 14-56 (121)
202 3e4c_A Caspase-1; zymogen, inf 36.7 1.2E+02 0.0042 24.6 7.5 52 40-94 60-118 (302)
203 2a5l_A Trp repressor binding p 36.7 77 0.0026 22.9 5.8 67 41-110 7-84 (200)
204 2csu_A 457AA long hypothetical 36.7 33 0.0011 29.5 4.2 62 40-106 294-377 (457)
205 3oq2_A Crispr-associated prote 36.6 14 0.00047 25.7 1.4 74 54-128 24-99 (103)
206 3bed_A PTS system, IIA compone 36.2 30 0.001 24.8 3.4 82 56-138 16-101 (142)
207 4g0m_A Protein argonaute 2; MI 36.2 53 0.0018 23.7 4.8 50 24-75 70-120 (150)
208 3o74_A Fructose transport syst 36.2 1.3E+02 0.0045 22.3 7.4 73 29-104 112-187 (272)
209 3kcq_A Phosphoribosylglycinami 35.7 65 0.0022 25.1 5.4 34 61-95 51-84 (215)
210 3lvu_A ABC transporter, peripl 35.5 48 0.0017 25.3 4.7 47 40-90 128-174 (258)
211 3hly_A Flavodoxin-like domain; 35.4 1.2E+02 0.0041 21.6 8.4 62 42-110 3-64 (161)
212 1eok_A Endo-beta-N-acetylgluco 35.3 86 0.0029 24.9 6.3 70 25-95 68-172 (290)
213 1s3c_A Arsenate reductase; ARS 35.3 76 0.0026 22.8 5.4 21 80-107 76-96 (141)
214 4b4t_W RPN10, 26S proteasome r 35.3 1.7E+02 0.0059 23.4 10.3 62 42-103 110-174 (268)
215 1i1q_B Anthranilate synthase c 34.5 86 0.003 23.0 5.8 59 40-110 1-59 (192)
216 2ark_A Flavodoxin; FMN, struct 34.5 86 0.0029 22.8 5.8 59 40-109 5-64 (188)
217 1vkm_A Conserved hypothetical 34.0 1.8E+02 0.0062 24.1 8.0 108 25-139 139-266 (297)
218 3td9_A Branched chain amino ac 33.8 1.3E+02 0.0045 23.5 7.1 60 40-103 150-210 (366)
219 3hut_A Putative branched-chain 33.6 1.1E+02 0.0038 23.8 6.7 48 56-103 24-78 (358)
220 3tb6_A Arabinose metabolism tr 33.3 1.2E+02 0.0041 22.7 6.7 32 41-72 139-170 (298)
221 2qai_A V-type ATP synthase sub 33.2 28 0.00097 24.5 2.7 41 64-104 15-55 (111)
222 4g0x_A Protein argonaute 1; MI 33.1 58 0.002 23.4 4.5 36 38-74 81-116 (147)
223 3mt0_A Uncharacterized protein 32.9 1.2E+02 0.004 23.3 6.6 84 12-105 14-97 (290)
224 4evq_A Putative ABC transporte 32.9 1.5E+02 0.0051 23.2 7.3 66 38-103 15-88 (375)
225 2y8v_A CHIC, class III chitina 32.2 1E+02 0.0034 24.6 6.2 67 24-94 73-151 (290)
226 3p9x_A Phosphoribosylglycinami 32.1 1.6E+02 0.0055 22.7 7.2 49 41-95 31-83 (211)
227 2fzv_A Putative arsenical resi 31.9 1.4E+02 0.0049 24.0 7.1 81 38-121 57-150 (279)
228 1f1j_A Caspase-7 protease; cas 31.8 1.4E+02 0.0049 24.3 7.1 55 39-96 68-132 (305)
229 3h11_B Caspase-8; cell death, 31.8 93 0.0032 24.9 5.9 43 50-95 44-86 (271)
230 3o21_A Glutamate receptor 3; p 31.7 2E+02 0.0069 23.1 8.4 63 41-106 132-194 (389)
231 3oy2_A Glycosyltransferase B73 31.6 1.6E+02 0.0056 23.3 7.5 88 28-124 205-298 (413)
232 3b6i_A Flavoprotein WRBA; flav 31.6 1.1E+02 0.0037 22.0 5.9 66 41-110 3-81 (198)
233 3eb2_A Putative dihydrodipicol 31.5 1.2E+02 0.0042 24.3 6.7 70 37-110 72-143 (300)
234 1wdv_A Hypothetical protein AP 31.2 78 0.0027 22.3 4.9 75 59-137 4-90 (152)
235 4g0x_A Protein argonaute 1; MI 31.2 78 0.0027 22.7 4.9 67 41-107 13-92 (147)
236 1yqh_A DUF77, IG hypothetical 31.1 1.3E+02 0.0044 21.0 5.8 54 41-94 11-66 (109)
237 2kpo_A Rossmann 2X2 fold prote 30.6 1.3E+02 0.0044 20.4 7.1 65 22-95 35-99 (110)
238 1uuy_A CNX1, molybdopterin bio 30.1 57 0.0019 23.9 4.1 66 38-107 4-81 (167)
239 3l6u_A ABC-type sugar transpor 29.7 1.6E+02 0.0054 22.1 6.8 63 41-104 137-202 (293)
240 1vki_A Hypothetical protein AT 29.5 1.6E+02 0.0053 21.8 6.5 78 58-136 22-109 (181)
241 1uxc_A FRUR (1-57), fructose r 29.5 36 0.0012 21.3 2.5 34 128-163 11-47 (65)
242 3nzn_A Glutaredoxin; structura 29.4 77 0.0026 20.7 4.3 50 54-103 32-83 (103)
243 3hyn_A Putative signal transdu 29.4 89 0.003 24.2 5.1 58 12-77 60-118 (189)
244 1z3e_A Regulatory protein SPX; 29.2 95 0.0032 21.6 5.0 37 55-91 12-49 (132)
245 4ds3_A Phosphoribosylglycinami 29.1 2E+02 0.0067 22.1 7.4 35 61-95 50-88 (209)
246 2uwj_E Type III export protein 29.0 54 0.0018 21.5 3.2 33 4-36 1-38 (70)
247 3rst_A Signal peptide peptidas 28.9 35 0.0012 26.7 2.8 30 79-108 28-57 (240)
248 3sir_A Caspase; hydrolase; 2.6 28.9 89 0.0031 24.8 5.3 53 40-95 20-81 (259)
249 1vk8_A Hypothetical protein TM 28.9 1E+02 0.0034 21.5 4.9 54 42-95 20-75 (106)
250 3c3k_A Alanine racemase; struc 28.7 1.8E+02 0.006 22.0 6.9 62 41-104 126-191 (285)
251 4ac1_X Endo-N-acetyl-beta-D-gl 28.3 2.2E+02 0.0077 22.6 8.2 80 23-106 62-156 (283)
252 3sm9_A Mglur3, metabotropic gl 28.1 2E+02 0.007 24.1 7.8 64 41-105 187-251 (479)
253 1es9_A PAF-AH, platelet-activa 28.0 1.8E+02 0.0061 21.3 8.8 97 37-139 91-204 (232)
254 3r6w_A FMN-dependent NADH-azor 28.0 1.8E+02 0.0062 21.4 7.6 67 41-110 3-100 (212)
255 2i4r_A V-type ATP synthase sub 28.0 69 0.0023 22.0 3.9 46 63-112 23-68 (102)
256 2h3h_A Sugar ABC transporter, 27.8 2E+02 0.007 21.9 8.4 64 40-104 124-189 (313)
257 1rtt_A Conserved hypothetical 27.8 76 0.0026 23.1 4.4 66 41-110 8-85 (193)
258 2vpi_A GMP synthase; guanine m 27.5 1.1E+02 0.0037 23.3 5.4 50 40-104 25-74 (218)
259 1v0l_A Endo-1,4-beta-xylanase 27.5 2.4E+02 0.0084 22.7 8.4 52 55-106 216-268 (313)
260 1ta9_A Glycerol dehydrogenase; 27.3 71 0.0024 27.5 4.7 47 55-103 105-151 (450)
261 2nu8_B SCS-beta, succinyl-COA 27.2 61 0.0021 27.4 4.2 44 62-105 274-318 (388)
262 1vjf_A DNA-binding protein, pu 27.2 1.9E+02 0.0064 21.3 7.1 77 59-136 18-103 (180)
263 3tqr_A Phosphoribosylglycinami 27.1 2.2E+02 0.0074 22.0 7.4 35 61-95 47-85 (215)
264 1meo_A Phosophoribosylglycinam 27.1 2.1E+02 0.0072 21.8 7.8 35 61-95 43-81 (209)
265 3l7h_A RE64145P, roadblock; LC 27.0 20 0.00069 24.8 0.9 24 83-106 3-26 (97)
266 2lu2_A H4, putative, microneme 26.9 1E+02 0.0035 22.1 4.7 75 19-95 38-125 (138)
267 3apt_A Methylenetetrahydrofola 26.9 2.5E+02 0.0087 22.7 8.1 78 24-105 30-107 (310)
268 2waa_A Acetyl esterase, xylan 26.8 1.1E+02 0.0038 24.7 5.7 86 38-140 224-326 (347)
269 3rqt_A Putative uncharacterize 26.7 1.4E+02 0.0048 25.2 6.5 37 41-77 329-365 (486)
270 2yxb_A Coenzyme B12-dependent 26.6 1.8E+02 0.0063 21.0 7.6 63 37-104 16-78 (161)
271 2hz5_A Dynein light chain 2A, 26.5 26 0.00088 24.6 1.4 26 81-106 10-35 (106)
272 3pam_A Transmembrane protein; 26.4 1.1E+02 0.0039 23.1 5.4 45 41-91 130-174 (259)
273 3ce9_A Glycerol dehydrogenase; 26.3 1.7E+02 0.0059 23.7 6.8 48 53-103 46-94 (354)
274 3ksm_A ABC-type sugar transpor 26.2 2E+02 0.0067 21.2 7.5 64 40-104 128-194 (276)
275 2ibo_A Hypothetical protein SP 25.8 1.4E+02 0.0049 20.5 5.3 53 42-94 7-61 (104)
276 3e61_A Putative transcriptiona 25.7 82 0.0028 23.6 4.4 75 24-104 109-184 (277)
277 4eyg_A Twin-arginine transloca 25.6 2.1E+02 0.0072 22.2 7.0 64 40-103 7-78 (368)
278 2epi_A UPF0045 protein MJ1052; 25.1 1.1E+02 0.0039 20.8 4.6 53 42-94 11-65 (100)
279 2l08_A Regulator of nonsense t 25.1 44 0.0015 23.1 2.4 27 102-128 12-38 (97)
280 3eaf_A ABC transporter, substr 25.0 2.3E+02 0.0078 22.5 7.2 34 70-103 49-82 (391)
281 1gxg_A Colicin E8 immunity pro 24.8 89 0.003 21.0 3.9 63 78-162 8-74 (85)
282 2kok_A Arsenate reductase; bru 24.5 56 0.0019 22.5 3.0 37 55-91 16-53 (120)
283 1o2d_A Alcohol dehydrogenase, 24.5 2E+02 0.0067 23.7 6.9 63 56-120 57-120 (371)
284 1pea_A Amidase operon; gene re 24.2 2.6E+02 0.009 22.0 8.7 64 40-105 141-205 (385)
285 3gdw_A Sigma-54 interaction do 24.1 1.1E+02 0.0039 21.9 4.7 93 40-138 5-102 (139)
286 4gud_A Imidazole glycerol phos 24.1 1.1E+02 0.0038 22.6 4.8 30 41-75 4-33 (211)
287 3sxu_A DNA polymerase III subu 24.1 1.5E+02 0.0051 21.6 5.4 34 43-76 116-149 (150)
288 1byk_A Protein (trehalose oper 24.1 2.1E+02 0.0073 20.9 9.2 70 30-104 108-179 (255)
289 3t66_A Nickel ABC transporter 24.0 1.6E+02 0.0054 25.0 6.3 39 40-78 330-368 (496)
290 2rbg_A Putative uncharacterize 24.0 2E+02 0.007 20.6 5.8 53 39-92 4-56 (126)
291 3kzp_A LMO0111 protein, putati 23.8 86 0.0029 23.4 4.2 53 51-108 182-234 (235)
292 1t0i_A YLR011WP; FMN binding p 23.7 1.4E+02 0.0046 21.5 5.2 77 42-121 3-111 (191)
293 3fro_A GLGA glycogen synthase; 23.7 2E+02 0.007 22.6 6.6 117 27-159 272-390 (439)
294 3cs3_A Sugar-binding transcrip 23.6 2.3E+02 0.0079 21.1 9.4 62 41-104 120-184 (277)
295 3bxw_B Chitinase domain-contai 23.6 2.5E+02 0.0084 23.4 7.4 41 54-94 171-214 (393)
296 1usg_A Leucine-specific bindin 23.4 2.4E+02 0.0082 21.5 6.9 15 18-32 19-33 (346)
297 3a2k_A TRNA(Ile)-lysidine synt 23.3 2.2E+02 0.0076 24.2 7.1 41 37-77 46-87 (464)
298 3p9z_A Uroporphyrinogen III co 23.1 1.8E+02 0.0061 22.0 5.9 43 41-95 185-227 (229)
299 2ohh_A Type A flavoprotein FPR 22.7 3E+02 0.01 22.1 10.4 66 38-110 255-320 (404)
300 3uhj_A Probable glycerol dehyd 22.6 1.1E+02 0.0037 25.7 4.9 79 10-102 33-111 (387)
301 2ywr_A Phosphoribosylglycinami 22.5 2.6E+02 0.0089 21.3 7.8 35 61-95 44-82 (216)
302 2fp4_B Succinyl-COA ligase [GD 22.4 67 0.0023 27.2 3.6 41 64-104 283-324 (395)
303 3lkb_A Probable branched-chain 22.4 1.8E+02 0.0061 23.0 6.0 78 22-103 127-204 (392)
304 3ia1_A THIO-disulfide isomeras 22.0 1.9E+02 0.0063 19.4 6.2 54 39-92 31-84 (154)
305 1gpm_A GMP synthetase, XMP ami 22.0 2.3E+02 0.0078 24.7 7.0 50 40-104 8-57 (525)
306 4g0o_A Protein argonaute 5; MI 21.9 38 0.0013 24.3 1.7 22 68-92 75-96 (139)
307 1rw1_A Conserved hypothetical 21.9 84 0.0029 21.3 3.4 38 55-92 11-49 (114)
308 2g2c_A Putative molybdenum cof 21.8 1.2E+02 0.004 22.1 4.5 62 39-105 5-77 (167)
309 3ngx_A Bifunctional protein fo 21.8 1.1E+02 0.0039 24.8 4.6 84 9-101 31-116 (276)
310 1jq5_A Glycerol dehydrogenase; 21.8 1.5E+02 0.005 24.3 5.5 48 54-102 44-91 (370)
311 1rd5_A Tryptophan synthase alp 21.6 2.8E+02 0.0095 21.3 9.4 71 25-98 5-95 (262)
312 2l8n_A Transcriptional repress 21.6 49 0.0017 20.8 2.0 34 128-163 20-53 (67)
313 1oeg_A Apolipoprotein E; siali 21.5 39 0.0013 18.0 1.2 22 16-37 1-22 (26)
314 3da8_A Probable 5'-phosphoribo 21.4 1.4E+02 0.0048 23.1 5.0 35 61-95 53-91 (215)
315 4ib2_A Putative lipoprotein; p 21.3 1.3E+02 0.0046 24.0 5.0 40 45-84 13-53 (252)
316 3l23_A Sugar phosphate isomera 21.3 2.4E+02 0.0082 22.0 6.5 56 52-107 105-167 (303)
317 3lou_A Formyltetrahydrofolate 21.2 3.3E+02 0.011 22.0 7.8 34 62-95 137-173 (292)
318 3f6r_A Flavodoxin; FMN binding 21.2 1.8E+02 0.006 19.9 5.2 107 41-163 3-117 (148)
319 2d00_A V-type ATP synthase sub 21.1 79 0.0027 21.9 3.2 45 63-112 17-61 (109)
320 4h08_A Putative hydrolase; GDS 21.0 2.3E+02 0.0078 20.1 6.1 53 19-72 92-157 (200)
321 4b4u_A Bifunctional protein fo 21.0 1.5E+02 0.0053 24.4 5.4 85 9-101 57-143 (303)
322 2l82_A Designed protein OR32; 21.0 2.4E+02 0.0081 20.3 6.4 22 65-91 126-147 (162)
323 1u04_A Argonaute, hypothetical 20.9 3.1E+02 0.01 25.6 7.9 38 37-75 470-507 (771)
324 3en0_A Cyanophycinase; serine 20.9 3.3E+02 0.011 21.9 7.5 59 37-103 54-116 (291)
325 3m9w_A D-xylose-binding peripl 20.8 2.8E+02 0.0096 21.0 8.0 67 37-104 122-195 (313)
326 3lop_A Substrate binding perip 20.7 1.9E+02 0.0064 22.6 5.8 27 77-103 53-79 (364)
327 2ava_A ACP I, acyl carrier pro 20.7 1.1E+02 0.0037 19.0 3.6 42 51-92 36-77 (82)
328 3i09_A Periplasmic branched-ch 20.7 1.6E+02 0.0055 23.1 5.4 48 56-103 25-77 (375)
329 2lol_A ACP, acyl carrier prote 20.7 1E+02 0.0035 18.9 3.5 40 52-91 39-78 (81)
330 1uz5_A MOEA protein, 402AA lon 20.7 2.2E+02 0.0074 24.1 6.4 63 38-105 179-254 (402)
331 3qi7_A Putative transcriptiona 20.7 2.1E+02 0.0071 24.2 6.2 46 56-106 75-120 (371)
332 3ixl_A Amdase, arylmalonate de 20.6 2.3E+02 0.008 21.8 6.2 70 29-104 109-187 (240)
333 4a26_A Putative C-1-tetrahydro 20.6 1.3E+02 0.0044 24.8 4.8 85 9-101 41-127 (300)
334 3f0i_A Arsenate reductase; str 20.3 88 0.003 21.6 3.3 39 55-93 15-54 (119)
335 1jkx_A GART;, phosphoribosylgl 20.3 2.9E+02 0.0099 21.0 7.8 35 61-95 43-81 (212)
336 3h11_A CAsp8 and FADD-like apo 20.1 1.7E+02 0.0058 23.4 5.4 51 38-95 41-91 (272)
337 2m1z_A LMO0427 protein; homolo 20.0 1.8E+02 0.0062 20.1 4.8 56 41-106 4-66 (106)
No 1
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=100.00 E-value=1.5e-57 Score=385.35 Aligned_cols=156 Identities=38% Similarity=0.649 Sum_probs=151.9
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
+|++|||||++|++|++++++++++|+++.|+.|+||+|+||+||||.+|+++|.|+|+++||+++.++||++++|+||+
T Consensus 21 ~Ma~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell 100 (303)
T 4b4u_A 21 HMALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLL 100 (303)
T ss_dssp -CCEECCHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHH
T ss_pred CCCEEeehHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHH
Confidence 47899999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccCC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINCG 164 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~~ 164 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++.|+||||.||++||++|++.
T Consensus 101 ~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~ 176 (303)
T 4b4u_A 101 AEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIE 176 (303)
T ss_dssp HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999998 7899999999999999999873
No 2
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=100.00 E-value=2.3e-56 Score=376.23 Aligned_cols=155 Identities=50% Similarity=0.756 Sum_probs=149.7
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
||+++||||++|++|++++++++++|+++++++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||+++||+|++
T Consensus 1 ~ma~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell 80 (288)
T 1b0a_A 1 MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELL 80 (288)
T ss_dssp -CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHH
T ss_pred CCCeEecHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 67889999999999999999999999887557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| .++|+||||+||+++|+++++
T Consensus 81 ~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i 155 (288)
T 1b0a_A 81 ELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNI 155 (288)
T ss_dssp HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999998 689999999999999999975
No 3
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=100.00 E-value=2.9e-55 Score=371.51 Aligned_cols=157 Identities=40% Similarity=0.654 Sum_probs=150.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhcc-CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~-g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (167)
|++++||||++|++|++++++++++|++++ |++|+||+|+||+||+|.+|+|+|.|+|+++||+++.++||+++||+|+
T Consensus 2 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~el 81 (301)
T 1a4i_A 2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEV 81 (301)
T ss_dssp CCCEECCHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHH
T ss_pred CCCEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 447899999999999999999999998875 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCC--CCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 86 ISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlvq~PLP~~--id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++.|++||+|++|||||||+|||+| +|+++++++|+|+||||||||.|+|+|+.|+.+++|+||||+||+++|+++++
T Consensus 82 l~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i 161 (301)
T 1a4i_A 82 MKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGV 161 (301)
T ss_dssp HHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCC
Confidence 9999999999999999999999999 99999999999999999999999999999843378999999999999999985
No 4
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=100.00 E-value=7.5e-55 Score=368.93 Aligned_cols=157 Identities=50% Similarity=0.840 Sum_probs=150.9
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccC-CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g-~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (167)
||+++||||++|++|++++++++++|++++| ++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||++++|+||
T Consensus 4 ~ma~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~el 83 (300)
T 4a26_A 4 PSAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVL 83 (300)
T ss_dssp -CCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHH
T ss_pred cccEEeehHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 3678999999999999999999999988777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|+..++|+||||.||+++|+++++
T Consensus 84 l~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i 161 (300)
T 4a26_A 84 EVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGI 161 (300)
T ss_dssp HHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999843588999999999999999975
No 5
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=100.00 E-value=7.9e-55 Score=366.58 Aligned_cols=155 Identities=46% Similarity=0.761 Sum_probs=150.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (167)
|++++||||++|++|++++++++++|+++++++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||++++|+||+
T Consensus 3 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell 82 (286)
T 4a5o_A 3 MTAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLL 82 (286)
T ss_dssp -CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHH
T ss_pred cccEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 55789999999999999999999999988678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 87 ~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||.||+++|+++++
T Consensus 83 ~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i 157 (286)
T 4a5o_A 83 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGA 157 (286)
T ss_dssp HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 789999999999999999986
No 6
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=100.00 E-value=8.2e-55 Score=365.71 Aligned_cols=152 Identities=41% Similarity=0.731 Sum_probs=147.9
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (167)
+++||||++|++|++++++++++|+++ |++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||+++||+|+++.
T Consensus 3 a~iidGk~ia~~i~~~~~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~ 81 (281)
T 2c2x_A 3 AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNET 81 (281)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred CEEeeHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 468999999999999999999999877 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 89 I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| .++|+||||.||+++|+++++
T Consensus 82 i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i 154 (281)
T 2c2x_A 82 IDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDI 154 (281)
T ss_dssp HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999998 689999999999999999974
No 7
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=100.00 E-value=4.1e-54 Score=360.70 Aligned_cols=146 Identities=25% Similarity=0.502 Sum_probs=143.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|++|++++++++++| |++|+||+|+||+||+|.+|+++|.|+|+++|| ++.++||+++||+|+++.|
T Consensus 2 ~ildGk~~a~~i~~~~~~~v~~l----~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I 76 (276)
T 3ngx_A 2 KILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRI 76 (276)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHH
Confidence 38999999999999999999988 899999999999999999999999999999999 9999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHHHHHHhhhcc
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLIN 162 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~ 162 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| +++|+||||+||+++|++++
T Consensus 77 ~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~ 147 (276)
T 3ngx_A 77 DDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG 147 (276)
T ss_dssp HHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998 78999999999999999987
No 8
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=100.00 E-value=1.2e-53 Score=359.36 Aligned_cols=152 Identities=43% Similarity=0.712 Sum_probs=148.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
++||||++|++|++++++++++|++++|++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||+++||+||++.|
T Consensus 5 ~ildGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I 84 (285)
T 3l07_A 5 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELI 84 (285)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHH
T ss_pred EEeehHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCC-CCCCCchHHHHHHHhhhccC
Q 031035 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRD-PLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~-~~~~PcTp~avi~lL~~~~~ 163 (167)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| . ++|+||||.||+++|+++++
T Consensus 85 ~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g--~~~~~~PcTp~gv~~lL~~~~i 157 (285)
T 3l07_A 85 DQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLR--DKKCLESCTPKGIMTMLREYGI 157 (285)
T ss_dssp HHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHT--CTTCCCCHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcC--CCCCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998 5 89999999999999999976
No 9
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.4e-53 Score=358.91 Aligned_cols=152 Identities=44% Similarity=0.714 Sum_probs=147.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (167)
+++||||++|++|++++++++++|+++ |.+|+||+|+||+||+|.+|+++|.|+|+++||+++.++||+++|++||++.
T Consensus 4 ~~iidGk~~a~~i~~~~~~~v~~l~~~-~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~ 82 (285)
T 3p2o_A 4 MTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLAL 82 (285)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred CEEeehHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 468999999999999999999999877 6699999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCC-CCCchHHHHHHHhhhccC
Q 031035 89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL-FLPCTPKAIILYSCLINC 163 (167)
Q Consensus 89 I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~-~~PcTp~avi~lL~~~~~ 163 (167)
|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| ++. |+||||.||+++|+++++
T Consensus 83 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i 156 (285)
T 3p2o_A 83 INTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEI 156 (285)
T ss_dssp HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998 577 999999999999999975
No 10
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=100.00 E-value=3.4e-52 Score=355.67 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=146.0
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHhccC-CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHH
Q 031035 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (167)
Q Consensus 7 ~m~~ildGk~la~~i~~~lk~~v~~l~~~~g-~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (167)
|++++||||++|++|++++++++++|+++++ ++|+||+|+||+||+|.+|+++|.|+|+++||+++.++||++ +|+
T Consensus 3 ~~~~~idgk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~l 79 (320)
T 1edz_A 3 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK---DFL 79 (320)
T ss_dssp CCCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG---GGH
T ss_pred CCCEEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh---HHH
Confidence 5578999999999999999999999988743 789999999999999999999999999999999999999976 779
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCC-------CCCCCCchHHHHHHHh
Q 031035 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGR-------DPLFLPCTPKAIILYS 158 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~-------~~~~~PcTp~avi~lL 158 (167)
++.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|.. .++|+||||.|++++|
T Consensus 80 ~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll 159 (320)
T 1edz_A 80 EEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKIL 159 (320)
T ss_dssp HHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999731 1589999999999999
Q ss_pred hhccCCC
Q 031035 159 CLINCGN 165 (167)
Q Consensus 159 ~~~~~~~ 165 (167)
+++++||
T Consensus 160 ~~~~~~~ 166 (320)
T 1edz_A 160 EFLKIYN 166 (320)
T ss_dssp HHTTCSC
T ss_pred Hhhcccc
Confidence 9977665
No 11
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=98.40 E-value=2.1e-08 Score=82.84 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=78.5
Q ss_pred EECCCcchHHHHHHH-HHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-
Q 031035 46 IVGGRKDSQSYVSMK-RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE- 123 (167)
Q Consensus 46 ~vg~d~as~~Y~~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~- 123 (167)
.+| +|.+++|...+ .+.|+++|+++....| +++++++.+.|+.||++ +++|+.|+.|++.++ -..++.++|.
T Consensus 16 viG-~pi~hS~Sp~~h~~~~~~~gi~~~y~~~--~~~~~~l~~~i~~l~~~-~~~G~nVtiP~k~~i--~~~~d~~~~~a 89 (287)
T 1nvt_A 16 LIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAF--DVLPENLKYVIDGAKAL-GIVGFNVTIPHKIEI--MKYLDEIDKDA 89 (287)
T ss_dssp EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEE--ECCGGGGGGHHHHHHHH-TCCEEEECTTSTTGG--GGGCSEECHHH
T ss_pred EEC-CCcccccCHHHHHHHHHHcCCCcEEEEE--EcCHHHHHHHHHHHHhC-CCCEEEEccCCHHHH--HHHHHhcCHHH
Confidence 456 89999999888 8899999999998888 56778999999999965 899999999999887 2233334442
Q ss_pred CCcccCCcc--cHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 124 KDVDGFHPL--NIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 124 KDVDGl~~~--NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|++.++++. +-|+++ |. +. |+.|+++.|+.+++
T Consensus 90 ~~igavnt~~~~~g~l~-g~--nT----d~~G~~~~L~~~~~ 124 (287)
T 1nvt_A 90 QLIGAVNTIKIEDGKAI-GY--NT----DGIGARMALEEEIG 124 (287)
T ss_dssp HHHTCCCEEEEETTEEE-EE--CC----HHHHHHHHHHHHHC
T ss_pred HHhCceeeEEeeCCEEE-Ee--cC----CHHHHHHHHHHhCC
Confidence 444444443 345554 42 22 99999999987654
No 12
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=98.33 E-value=5.6e-08 Score=78.99 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred EECCCcchHHHH-HHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCC-C
Q 031035 46 IVGGRKDSQSYV-SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E 123 (167)
Q Consensus 46 ~vg~d~as~~Y~-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P-~ 123 (167)
.+| +|.+++|. ....+.|+++|+++....+ +++++++.+.|+.++.+ ++|+.|+.|++.++ -..++.++| .
T Consensus 6 ~~G-~pi~hs~sp~~h~~~~~~~g~~~~y~~~--~~~~~~l~~~i~~l~~~--~~G~~vt~P~k~~i--~~~~~~l~~~a 78 (263)
T 2d5c_A 6 VLG-HPVAHSLSPAMHAFALESLGLEGSYEAW--DTPLEALPGRLKEVRRA--FRGVNLTLPLKEAA--LAHLDWVSPEA 78 (263)
T ss_dssp EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEE--ECCGGGHHHHHHHHHHH--CSEEEECTTCTTGG--GGGCSEECHHH
T ss_pred EEC-CCcccccCHHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHhcccc--CceEEEcccCHHHH--HHHHHHHhHHH
Confidence 356 78888888 7889999999999988776 46778999999999987 99999999999988 456778888 8
Q ss_pred CCcccCCcc--cHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 124 KDVDGFHPL--NIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 124 KDVDGl~~~--NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|+++|+++. +.|++... +.. ..|++..|+..++
T Consensus 79 ~~~gavn~i~~~~g~~~g~--ntd-----~~g~~~~l~~~~~ 113 (263)
T 2d5c_A 79 QRIGAVNTVLQVEGRLFGF--NTD-----APGFLEALKAGGI 113 (263)
T ss_dssp HHHTCCCEEEEETTEEEEE--CCH-----HHHHHHHHHHTTC
T ss_pred HHhCCCCcEEccCCeEEEe--CCC-----HHHHHHHHHHhCC
Confidence 999999998 77877532 222 2688888887654
No 13
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=98.28 E-value=5.3e-08 Score=79.86 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=85.2
Q ss_pred ECCCcchHHHHH-HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-C
Q 031035 47 VGGRKDSQSYVS-MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE-K 124 (167)
Q Consensus 47 vg~d~as~~Y~~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~-K 124 (167)
+| +|-+++|-. ...+.|+++|+++....|+ ++++++.+.|+.++ +++++|+.|++|++.++ -.+++.++|. |
T Consensus 7 iG-~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~--~~~ld~~~~~A~ 80 (271)
T 1nyt_A 7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVL--APINDFINTLNAFF-SAGGKGANVTVPFKEEA--FARADELTERAA 80 (271)
T ss_dssp EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEE--CCTTCHHHHHHHHH-HTTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred EC-CCcccccCHHHHHHHHHHCCCCcEEEEEE--cCHHHHHHHHHHHH-hCCCCeEEEccCCHHHH--HHHHhhcCHHHH
Confidence 45 788888877 7788999999998888774 56789999999999 78999999999999776 5677888898 9
Q ss_pred CcccCCcc---cHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 125 DVDGFHPL---NIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 125 DVDGl~~~---NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
+++++|+. +-|++ .|. -+++.|+++.|+.+++
T Consensus 81 ~igavNti~~~~~g~l-~G~------ntD~~G~~~~L~~~~~ 115 (271)
T 1nyt_A 81 LAGAVNTLMRLEDGRL-LGD------NTDGVGLLSDLERLSF 115 (271)
T ss_dssp HHTCCSEEEECTTSCE-EEE------CCHHHHHHHHHHHHTC
T ss_pred HhCCceEEEEcCCCeE-EEe------CCCHHHHHHHHHhcCc
Confidence 99999987 55666 342 2679999999988764
No 14
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=98.22 E-value=2.6e-07 Score=75.87 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=84.9
Q ss_pred EEECCCcchHHHHHHHH-HHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC
Q 031035 45 VIVGGRKDSQSYVSMKR-KACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE 123 (167)
Q Consensus 45 i~vg~d~as~~Y~~~k~-k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~ 123 (167)
-++| +|.|++|..... +.++++|+++....++ ++++++.+.|+.++. .+++|+.|+.|++.++ -..++.++|.
T Consensus 16 ~liG-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~-~~~~G~nvtiP~k~~i--~~~ld~l~~~ 89 (275)
T 2hk9_A 16 GVIG-FPVKHSLSPVFQNALIRYAGLNAVYLAFE--INPEELKKAFEGFKA-LKVKGINVTVPFKEEI--IPLLDYVEDT 89 (275)
T ss_dssp EEEE-SSCTTCSHHHHHHHHHHHHTCSEEEEEEE--CCGGGHHHHHHHHHH-HTCCEEEECTTSTTTT--GGGCSEECHH
T ss_pred EEEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHHHHhhHH
Confidence 3578 999999998666 9999999999888774 567899999999984 6899999999999877 4466777887
Q ss_pred -CCcccCCcc--cHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 124 -KDVDGFHPL--NIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 124 -KDVDGl~~~--NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|++.++++. +-|++. |. -+++.|++..|+..++
T Consensus 90 A~~~gavnti~~~~g~~~-g~------nTd~~G~~~~l~~~~~ 125 (275)
T 2hk9_A 90 AKEIGAVNTVKFENGKAY-GY------NTDWIGFLKSLKSLIP 125 (275)
T ss_dssp HHHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHCT
T ss_pred HHHhCCcceEEeeCCEEE-ee------cCCHHHHHHHHHHhCC
Confidence 899999887 455553 21 2478899999887654
No 15
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=97.72 E-value=2.9e-06 Score=69.56 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=75.5
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-CCcccCCcc---cH
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE-KDVDGFHPL---NI 134 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~-KDVDGl~~~---Nl 134 (167)
.--+.++++|+++....| +++++++.+.|+.++ +++++|+.|+.|++.++ -.+++.++|. |+++++|.. +-
T Consensus 19 ~hn~~~~~~gl~~~y~~~--~~~~~~l~~~i~~~~-~~~~~G~nVT~P~K~~v--~~~ld~~~~~A~~igavNti~~~~~ 93 (272)
T 1p77_A 19 IQNKLAAQTHQTMEYIAK--LGDLDAFEQQLLAFF-EEGAKGCNITSPFKERA--YQLADEYSQRAKLAEACNTLKKLDD 93 (272)
T ss_dssp HHHHHHHHTTCCEEEEEE--ECCTTTHHHHHHHHH-HTTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCSEEEECTT
T ss_pred HHHHHHHHCCcCeEEEEE--EcCHHHHHHHHHHHH-hCCCCEEEECcCCHHHH--HHHHhhcCHHHHHhCCceEEEEccC
Confidence 346789999999888877 455688999999998 67899999999998776 6688999999 999999987 66
Q ss_pred HHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 135 GKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 135 G~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|+++-. +. .+.|+++.|+..++
T Consensus 94 g~l~g~--NT-----D~~G~~~~L~~~~~ 115 (272)
T 1p77_A 94 GKLYAD--NT-----DGIGLVTDLQRLNW 115 (272)
T ss_dssp SCEEEE--CC-----HHHHHHHHHHHTTC
T ss_pred CEEEEe--cC-----CHHHHHHHHHHhCC
Confidence 776532 12 38899999987654
No 16
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=97.57 E-value=1.4e-05 Score=66.44 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=80.8
Q ss_pred ECCCcchHHHHHHHH-HHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-C
Q 031035 47 VGGRKDSQSYVSMKR-KACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE-K 124 (167)
Q Consensus 47 vg~d~as~~Y~~~k~-k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~-K 124 (167)
+| +|.+++|...+. +.++++|+++....+ +++++++.+.|+.|+ +.+++|+.|+.|++.++ -..++.++|. |
T Consensus 29 iG-~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~--~~~~~~l~~~v~~l~-~~~~~G~nVTiP~K~~i--~~~ld~~~~~A~ 102 (297)
T 2egg_A 29 IG-FPVEHSLSPLMHNDAFARLGIPARYHLF--SVEPGQVGAAIAGVR-ALGIAGVNVTIPHKLAV--IPFLDEVDEHAR 102 (297)
T ss_dssp EE-SSCTTCSHHHHHHHHHHHTTCCEEEEEE--ECCTTCHHHHHHHHH-HHTCCEEEECTTCTTTT--GGGCSEECHHHH
T ss_pred EC-CCcccccCHHHHHHHHHHcCcCcEEEEE--EcCHHHHHHHHHHHh-hCCCCeEEECCcCHHHH--HHHHHHHhHHHH
Confidence 46 788999998888 899999999888777 345678888899888 55799999999999888 5677888888 9
Q ss_pred CcccCCcc--cHHHhhccCCCCCCCCchHHHHHHHhhhcc
Q 031035 125 DVDGFHPL--NIGKLAMKGRDPLFLPCTPKAIILYSCLIN 162 (167)
Q Consensus 125 DVDGl~~~--NlG~l~~g~~~~~~~PcTp~avi~lL~~~~ 162 (167)
++.++|.. +-|+++-. +.. -.|++..|+..+
T Consensus 103 ~iGavNti~~~~g~l~g~--nTd-----~~G~~~~l~~~~ 135 (297)
T 2egg_A 103 RIGAVNTIINNDGRLVGY--NTD-----GLGYVQALEEEM 135 (297)
T ss_dssp HHTCCCEEEEETTEEEEE--CCH-----HHHHHHHHHHHT
T ss_pred HhCCCCeEECcCCeEeec--cCC-----HHHHHHHHHHhC
Confidence 99999987 66776543 222 267777776554
No 17
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.33 E-value=0.26 Score=39.82 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=42.0
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC---CCcchHHHHHHHHHHHHHcCceee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG---GRKDSQSYVSMKRKACAEVGIKSF 72 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg---~d~as~~Y~~~k~k~~~~~Gi~~~ 72 (167)
+.|+|++ |+++-++++.+.++++ |..| +++++.-. .+|--....+...+.|++.|..+.
T Consensus 22 rvln~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 97 (338)
T 3dbi_A 22 RVLSGNGYVSQETKDRVFQAVEES----GYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLL 97 (338)
T ss_dssp ------------------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEE
Confidence 4688753 5555555555544443 4444 56666554 355556667888999999999988
Q ss_pred eecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 73 DIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 73 ~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..... .+.+.-.+.++.+.+. .|+||++.
T Consensus 98 ~~~~~--~~~~~~~~~~~~l~~~-~vdgiIi~ 126 (338)
T 3dbi_A 98 LADGK--HSAEEERQAIQYLLDL-RCDAIMIY 126 (338)
T ss_dssp EEECT--TSHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred EEeCC--CChHHHHHHHHHHHhC-CCCEEEEe
Confidence 77633 3444445566666543 79999995
No 18
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=93.64 E-value=0.021 Score=47.18 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=60.4
Q ss_pred ECCCcchHHHHHHHH-HHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-C
Q 031035 47 VGGRKDSQSYVSMKR-KACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE-K 124 (167)
Q Consensus 47 vg~d~as~~Y~~~k~-k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~-K 124 (167)
+| +|-++++--... +.++++|+++....++ ++++++.+.++.++. +++.|+.|..|... +.-.+++.++|. |
T Consensus 11 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~v~~l~~-~~~~G~nVTiP~K~--~v~~~ld~ls~~A~ 84 (282)
T 3fbt_A 11 IG-EKLGHSHSSYIHKLIFEKVGIKGIYNLFE--VPKEKLKESVDTFKI-IKCGGLNVTIPYKV--EVMKELYEISEKAR 84 (282)
T ss_dssp EE-SSCCCCHHHHHHHHHHHHHTCCEEEEEEE--CCGGGHHHHHHHHHH-TTCCEEEECTTCTT--GGGGGCSEECHHHH
T ss_pred EC-CCccccchHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHhc-CCCCEEEEcCCCHH--HHHHHHHhcCHHHH
Confidence 45 788888887777 7889999998777663 455889999988875 68999999999874 334566666666 6
Q ss_pred CcccCCccc
Q 031035 125 DVDGFHPLN 133 (167)
Q Consensus 125 DVDGl~~~N 133 (167)
.+.++|...
T Consensus 85 ~iGAVNTv~ 93 (282)
T 3fbt_A 85 KIGAVNTLK 93 (282)
T ss_dssp HHTCCCEEE
T ss_pred HcCCcceEE
Confidence 666666543
No 19
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=93.61 E-value=0.33 Score=39.56 Aligned_cols=93 Identities=15% Similarity=0.252 Sum_probs=42.2
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ ++.+-++++.+.++++ |..| .+++|.-. .++--..+++...+.|++.|..+...
T Consensus 22 rvLn~~~~vs~~tr~rV~~~a~~l----gY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 97 (349)
T 1jye_A 22 RVVNQASHVSAKTREKVEAAMAEL----NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVS 97 (349)
T ss_dssp --------------------------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEE
Confidence 4688864 6666666666555554 4443 44544422 24444556778889999999998876
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.... .+.+...+.++.+-. ..|+|||+..|..
T Consensus 98 ~~~~-~~~~~~~~~l~~l~~-~~vdGiIi~~~~~ 129 (349)
T 1jye_A 98 MVER-SGVEACKTAVHNLLA-QRVSGLIINYPLD 129 (349)
T ss_dssp ECCS-SSHHHHHHHHHHHHT-TTCSCEEEESCCC
T ss_pred eCCC-CcHHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence 5432 233444556666654 4699999986653
No 20
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=93.21 E-value=0.48 Score=38.10 Aligned_cols=86 Identities=8% Similarity=-0.071 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhc-------cCCCceEEEEEEC--CCcchHHHHHHHHHHHHHcCceeeeecCCCC--CCHHHH
Q 031035 17 VAQTIRSEIAEEVRLLSEK-------YGKVPGLAVVIVG--GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAEL 85 (167)
Q Consensus 17 la~~i~~~lk~~v~~l~~~-------~g~~P~Laii~vg--~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el 85 (167)
++.+-++++.+.+++|.=. .+...+++++.-+ .++--...++...+.|++.|..+....+..+ .+.+.-
T Consensus 14 ~s~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~ 93 (342)
T 1jx6_A 14 EFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQ 93 (342)
T ss_dssp HCHHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHH
T ss_pred hcHHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHH
Confidence 5566667777767666210 1223356666654 4565566777889999999988776632222 344445
Q ss_pred HHHHHHhcCCCCCcEEEE
Q 031035 86 ISKVHELNVMPDVHGILV 103 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlv 103 (167)
.+.++.+.. ..|+||++
T Consensus 94 ~~~i~~l~~-~~vdgiIi 110 (342)
T 1jx6_A 94 SLSLMEALK-SKSDYLIF 110 (342)
T ss_dssp HHHHHHHHH-TTCSEEEE
T ss_pred HHHHHHHHh-cCCCEEEE
Confidence 556666654 35999999
No 21
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=93.21 E-value=0.26 Score=39.90 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=58.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHH--------h-ccCCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLS--------E-KYGKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~--------~-~~g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
+.|+|++ |+++-++++.+.+++|. . +.+...++++|.-. .+|-...+.+...+.|++.|........
T Consensus 19 rvLn~~~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-- 96 (340)
T 1qpz_A 19 HVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-- 96 (340)
T ss_dssp HHHHTCSCCCHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC--
T ss_pred HHHcCcCCCCHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC--
Confidence 4566653 66666777776666551 0 01334456666533 3454555677889999999998876543
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+.+.+...+.++.+.. ..|+||++.-
T Consensus 97 ~~~~~~~~~~~~~l~~-~~vdgiI~~~ 122 (340)
T 1qpz_A 97 WNNLEKQRAYLSMMAQ-KRVDGLLVMC 122 (340)
T ss_dssp TTCHHHHHHHHHHHHH-TTCSEEEECC
T ss_pred CCCHHHHHHHHHHHHc-CCCCEEEEeC
Confidence 3345555666777653 4699999863
No 22
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=92.96 E-value=0.37 Score=38.75 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=58.5
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.+++| |..| +++++.-. .+|--..+.+...+.|++.|......
T Consensus 21 rvln~~~~vs~~tr~rV~~aa~~l----gY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 96 (332)
T 2hsg_A 21 RVVNGNPNVKPSTRKKVLETIERL----GYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS 96 (332)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHH----TCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4677753 6666677776666655 4433 56666532 35555566778889999999988776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.. +.+.+...+.++.+.. ..|+|||+.-
T Consensus 97 ~~--~~~~~~~~~~~~~l~~-~~vdgiI~~~ 124 (332)
T 2hsg_A 97 NS--DQNQDKELHLLNNMLG-KQVDGIIFMS 124 (332)
T ss_dssp EC--CSHHHHHHHHHHHTSC-CSSCCEEECC
T ss_pred eC--CCChHHHHHHHHHHHh-CCCcEEEEec
Confidence 43 2234455667777764 5799999963
No 23
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=92.14 E-value=0.43 Score=38.43 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=39.8
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.+++| |..| +++++.-. .++--..+.+...+.|++.|......
T Consensus 24 rvln~~~~vs~~tr~rV~~~a~~l----gY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 99 (332)
T 2o20_A 24 RVVNGNANVKEKTRQKVLEAIAEL----DYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILA 99 (332)
T ss_dssp ------------------------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4688864 6666666665555544 4433 45555432 23444455677889999999988776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
... .+.+...+.++.+.. ..|+||++.-
T Consensus 100 ~~~--~~~~~~~~~~~~l~~-~~vdgiI~~~ 127 (332)
T 2o20_A 100 NSD--NDVEKEEKVLETFLS-KQVDGIVYMG 127 (332)
T ss_dssp ECT--TCHHHHHHHHHHHHH-TTCSEEEECS
T ss_pred ECC--CChHHHHHHHHHHHh-CCCCEEEEeC
Confidence 433 344555566666653 4699999964
No 24
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=91.73 E-value=1.3 Score=35.61 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=42.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.++++ |..| .+++|.-. .+|--...++...+.|++.|..+...
T Consensus 23 r~Ln~~~~vs~~tr~rV~~~~~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 98 (339)
T 3h5o_A 23 RVLNQPQQVSEQLREKVMQAVDAL----AYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIG 98 (339)
T ss_dssp --------------------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHh----CCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4677754 4444444444444433 5554 34444332 34555667888999999999998776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
... .+.+...+.++.+... .|+|||+.-
T Consensus 99 ~~~--~~~~~~~~~~~~l~~~-~vdGiIi~~ 126 (339)
T 3h5o_A 99 NSH--YDAGQELQLLRAYLQH-RPDGVLITG 126 (339)
T ss_dssp ECT--TCHHHHHHHHHHHHTT-CCSEEEEEC
T ss_pred eCC--CChHHHHHHHHHHHcC-CCCEEEEeC
Confidence 543 3455566677777654 799999964
No 25
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=90.54 E-value=0.68 Score=35.56 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=47.3
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
|++++|.-+ +++-.....+...+.|++.|..+.......+.+.+.-.+.++.+-+...|+||++.-
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~ 67 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAP 67 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 355655532 344556667888999999999988776545556677777888877665599999963
No 26
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=89.70 E-value=2.3 Score=32.42 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=49.0
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
|+.+|| .|. .++.-+.+-..+.++++|+.|+....+..-+.+++.+.+++..++...+-||.-
T Consensus 3 ~~V~Ii-mgs-~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~ 65 (159)
T 3rg8_A 3 PLVIIL-MGS-SSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITI 65 (159)
T ss_dssp CEEEEE-ESS-GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEE
T ss_pred CeEEEE-ECc-HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEE
Confidence 555544 453 345666777889999999999999999999999999999998765445666654
No 27
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=89.69 E-value=0.72 Score=37.31 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=40.4
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.++++ |..| ++++|.-. .+|--....+...+.|++.|..+...
T Consensus 25 r~Ln~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 100 (333)
T 3jvd_A 25 RALSGKGYVSPQTREKVQAAAKEL----NYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA 100 (333)
T ss_dssp -------------------------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH----CCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4577754 4444455554444443 4443 45555433 24445566778889999999998887
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.... .+.-.+.++.+.. ..|+||++.-+
T Consensus 101 ~~~~---~~~~~~~~~~l~~-~~vdGiIi~~~ 128 (333)
T 3jvd_A 101 EANS---VQAQDVVMESLIS-IQAAGIIHVPV 128 (333)
T ss_dssp ECCS---HHHHHHHHHHHHH-HTCSEEEECCC
T ss_pred CCCC---hHHHHHHHHHHHh-CCCCEEEEcch
Confidence 6543 3444455555543 36999999644
No 28
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=89.58 E-value=1.1 Score=35.95 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=38.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+.+-++++.+.+++| |..| +++++.-. .++--..+.+...+.|++.|......
T Consensus 21 rvln~~~~vs~~tr~rV~~~~~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 96 (330)
T 3ctp_A 21 RHLNNTGYVSEDAREKIQKVVDEL----NYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLC 96 (330)
T ss_dssp -------------------------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHh----CCCcCHHHHHhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688864 6666666665555444 4433 45555432 23444456678889999999988776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
... .+.+...+.++.+.. ..|+|||
T Consensus 97 ~~~--~~~~~~~~~~~~l~~-~~vdgiI 121 (330)
T 3ctp_A 97 NTD--DDKEKEKTYLEVLQS-HRVAGII 121 (330)
T ss_dssp ECT--TCHHHHHHHHHHHHH-TTCSEEE
T ss_pred eCC--CChHHHHHHHHHHHh-CCCCEEE
Confidence 543 344555566666653 4699999
No 29
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=88.86 E-value=1 Score=36.66 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=39.3
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.+++| |..| ++++|.-. .+|--..+++...+.|++.|......
T Consensus 27 rvLn~~~~Vs~~tr~rV~~aa~~l----gY~pn~~ar~l~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 102 (348)
T 3bil_A 27 RALADNPAVAASTRERIQQLASDL----GYRANAQARALRSSRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT 102 (348)
T ss_dssp ---------------------------------------------CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHh----CCCcCHHHHhhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4577763 5555555555544444 4433 45555422 23444456677889999999988776
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
... .+.+...+.++.+.. ..|+|||+.-
T Consensus 103 ~~~--~~~~~~~~~~~~l~~-~~vdgiI~~~ 130 (348)
T 3bil_A 103 NSN--EDATTMSGSLEFLTS-HGVDGIICVP 130 (348)
T ss_dssp ECT--TCHHHHHHHHHHHHH-TTCSCEEECC
T ss_pred eCC--CCHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 543 244444556666653 4699999863
No 30
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=88.55 E-value=0.98 Score=36.79 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=46.4
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCC-c-------------eEEEEEEC------CCcchHHHHHHHHHHHHHcC
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKV-P-------------GLAVVIVG------GRKDSQSYVSMKRKACAEVG 68 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~-P-------------~Laii~vg------~d~as~~Y~~~k~k~~~~~G 68 (167)
+.|+|++ |+++-++++.+.+++| |.. | .+++|.-. .+|-...+++...+.|+ |
T Consensus 28 rvLn~~~~Vs~~tr~rV~~~a~~l----gY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g 101 (366)
T 3h5t_A 28 NAYNRPEQLSAELRQRILDTAEDM----GYLGPDPVARSLRTRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--D 101 (366)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHHT----TC--------------CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--S
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHh----CCCCCCHHHHHhhcCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--h
Confidence 3466643 4555555555555444 665 4 34544433 12333345566677777 8
Q ss_pred ceeeeecCCCCCC--HHHHHHHHHHhcCCCCCcEEEEe
Q 031035 69 IKSFDIDLPEQVS--EAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 69 i~~~~~~l~~~~~--~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+..+....+.. +.++ ++.+.. ..|+|||+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~---~~~l~~-~~vdGiIi~ 135 (366)
T 3h5t_A 102 TQLTLIPASPASSVDHVSA---QQLVNN-AAVDGVVIY 135 (366)
T ss_dssp CEEEEEECCCCTTCCHHHH---HHHHHT-CCCSCEEEE
T ss_pred CCEEEEEcCCCccHHHHHH---HHHHHh-CCCCEEEEe
Confidence 8877776654432 4444 444443 479999997
No 31
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=88.14 E-value=3.5 Score=33.08 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=55.8
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.++++ |..| .+++|.-. .+|--...++...+.|++.|..+...
T Consensus 29 r~Ln~~~~vs~~tr~rV~~~~~~l----gY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 104 (344)
T 3kjx_A 29 RVLRNRGDVSDATRARVLAAAKEL----GYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG 104 (344)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHHHH----TCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHh----CCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3466542 4455555665555554 5544 45555432 24555666788999999999998766
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
... .+.+...+.++.+.. ..|+|||+.
T Consensus 105 ~~~--~~~~~~~~~i~~l~~-~~vdGiIi~ 131 (344)
T 3kjx_A 105 VTD--YLPEKEEKVLYEMLS-WRPSGVIIA 131 (344)
T ss_dssp ECT--TCHHHHHHHHHHHHT-TCCSEEEEE
T ss_pred eCC--CCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 543 244555667777664 479999996
No 32
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=86.05 E-value=0.34 Score=40.52 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=58.4
Q ss_pred EECCCcchHHHHHHHHH-HHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcCCCC-
Q 031035 46 IVGGRKDSQSYVSMKRK-ACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE- 123 (167)
Q Consensus 46 ~vg~d~as~~Y~~~k~k-~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I~P~- 123 (167)
.+| +|-++++--...+ .++++|+++....| +++++++.+.++.+.. .++.|+-|..|.... .-.+++.++|.
T Consensus 42 viG-~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~--~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~--v~~~lD~ls~~A 115 (315)
T 3tnl_A 42 LIA-TPIRHSLSPTMHNEAFAKLGLDYVYLAF--EVGDKELKDVVQGFRA-MNLRGWNVSMPNKTN--IHKYLDKLSPAA 115 (315)
T ss_dssp EEE-SSCTTCSHHHHHHHHHHHHTCCEEEEEE--ECCHHHHHHHHHHHHH-TTCCEEEECTTSTTT--GGGGCSEECHHH
T ss_pred EEC-CCccccccHHHHHHHHHHcCCCcEEEEE--ecCHHHHHHHHHHHhc-CCCCEEEEcCCChHH--HHHHHHhcCHHH
Confidence 346 6777777777776 78999999887776 4567889888888875 589999999997743 23455555555
Q ss_pred CCcccCCcc
Q 031035 124 KDVDGFHPL 132 (167)
Q Consensus 124 KDVDGl~~~ 132 (167)
|.+.++|..
T Consensus 116 ~~iGAVNTi 124 (315)
T 3tnl_A 116 ELVGAVNTV 124 (315)
T ss_dssp HHHTCCSEE
T ss_pred HHhCccceE
Confidence 555555543
No 33
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=86.03 E-value=3.3 Score=32.11 Aligned_cols=72 Identities=7% Similarity=-0.063 Sum_probs=47.7
Q ss_pred CCCceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 37 GKVPGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 37 g~~P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
+.+.++++|.-.- ++--....+...+.|++.|+++.........+.+.-.+.++.+-. ..|+||++.-.-+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPH 75 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChh
Confidence 3455677666432 444555667888999999999988876553355556666666655 36999999744444
No 34
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=85.90 E-value=4.7 Score=31.10 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=52.8
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHI 111 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i 111 (167)
..+|+.+||.-+ + ++.-..+-..+.++++||.|+....+...+.+++.+..++..+ ..+.-||.--=.-.|+
T Consensus 10 ~~~P~V~IimGS-~-SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~-~g~~ViIa~AG~aahL 81 (173)
T 4grd_A 10 HSAPLVGVLMGS-S-SDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARE-RGLRAIIAGAGGAAHL 81 (173)
T ss_dssp CSSCSEEEEESS-G-GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTT-TTCSEEEEEEESSCCH
T ss_pred CCCCeEEEEeCc-H-hHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHh-cCCeEEEEeccccccc
Confidence 457877766544 3 4455666778999999999999999999999999999999754 4566666543333333
No 35
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=85.90 E-value=2.6 Score=34.17 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=39.1
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhccCCCc-------------eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee
Q 031035 10 TIIDGKA-VAQTIRSEIAEEVRLLSEKYGKVP-------------GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 10 ~ildGk~-la~~i~~~lk~~v~~l~~~~g~~P-------------~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
+.|+|++ |+++-++++.+.++++ |..| .+++|.-. .++--..+++...+.|++.|..+...
T Consensus 31 r~Ln~~~~vs~~tr~rV~~~a~~l----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 106 (355)
T 3e3m_A 31 RALKKDSPISSETRERILKVVKDM----NYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG 106 (355)
T ss_dssp --------------------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHh----CCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4577653 4444444444444433 5444 34444322 13334456678889999999998877
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 75 DLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 75 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.... +.+...+.++.+.. ..|+||++.
T Consensus 107 ~~~~--~~~~~~~~~~~l~~-~~vdGiI~~ 133 (355)
T 3e3m_A 107 YTAY--SPEREEQLVETMLR-RRPEAMVLS 133 (355)
T ss_dssp ECTT--CHHHHHHHHHHHHH-TCCSEEEEE
T ss_pred eCCC--ChHHHHHHHHHHHh-CCCCEEEEe
Confidence 5432 44445566666654 379999996
No 36
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=84.81 E-value=3.9 Score=31.61 Aligned_cols=69 Identities=7% Similarity=-0.021 Sum_probs=48.9
Q ss_pred CCCceEEEEEEC--CCcchHHHHHHHHHHHHHc-CceeeeecC-CCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG--GRKDSQSYVSMKRKACAEV-GIKSFDIDL-PEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg--~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l-~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.+-++++|.-. +++--....+...+.|++. |..+..... ....+.+...+.++.+.. ..|+||++.-.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE-EQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT-TCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEECCC
Confidence 455677777666 4666666677888999998 888777654 234466777778888765 46999999744
No 37
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=84.69 E-value=3.3 Score=33.27 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=46.8
Q ss_pred CceEEEEEECC--CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEe
Q 031035 39 VPGLAVVIVGG--RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~--d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq 104 (167)
++++++|.-+. ++--....+...+.|++.|+.+..... +.+.+.-.+.|+.+-+. ..|+||++.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~ 69 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLV 69 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 46777776653 245566778889999999999888743 33556666777777666 789999995
No 38
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=84.68 E-value=6 Score=30.31 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=48.6
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+|+.+| ..|. .++.-+.+-..+.++++|+.|+....+...+.+++.+.++++.++ .+.-||.-
T Consensus 5 ~p~V~I-imgS-~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~ 67 (166)
T 3oow_A 5 SVQVGV-IMGS-KSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKER-GLKVIIAG 67 (166)
T ss_dssp CEEEEE-EESS-GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEE
T ss_pred CCeEEE-EECc-HHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhC-CCcEEEEE
Confidence 465554 4553 355667778889999999999999999999999999999998654 35656653
No 39
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=83.31 E-value=3.9 Score=31.48 Aligned_cols=64 Identities=6% Similarity=-0.020 Sum_probs=47.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..+|..+||.-+ .++.-+.+-..+.++++|+.|+....+...+.+++.+..++..++ .+.-||.
T Consensus 9 ~~~~~V~IimGS--~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa 72 (170)
T 1xmp_A 9 HMKSLVGVIMGS--TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARER-GLKVIIA 72 (170)
T ss_dssp --CCSEEEEESS--GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEE
T ss_pred cCCCcEEEEECc--HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 457877765544 356667777889999999999999999999999999999876543 3444554
No 40
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=83.23 E-value=5.2 Score=30.60 Aligned_cols=65 Identities=5% Similarity=0.011 Sum_probs=44.1
Q ss_pred ceEEEEEECCC----cch--HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 40 PGLAVVIVGGR----KDS--QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 40 P~Laii~vg~d----~as--~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
-++.+|....+ +.| ..-++...+.+++.|.+++.+.|.++..-+++.+.|.. -|+|+++.|+-..
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~------AD~iV~~~P~y~~ 83 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW------ADVVIWQMPGWWM 83 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH------CSEEEEEEECBTT
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh------CCEEEEECCcccc
Confidence 45666777777 222 33455566667777999999999876655666666555 3799999999643
No 41
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.87 E-value=2.1 Score=30.61 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCc
Q 031035 22 RSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVH 99 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 99 (167)
|+++++.++.+--+. .+.-+.-.+.+|+++.+ +|.+.|+++||.. +++++|++.|+..-.+++-.
T Consensus 39 R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~-----sKl~KA~~lgI~I--------isE~~f~~ll~~~~~~~~~~ 105 (112)
T 2ebu_A 39 RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ-----SKSDKAAALGTKI--------IDEDGLLNLIRTMPGKKSKY 105 (112)
T ss_dssp HHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS-----HHHHHHHHHTCEE--------EEHHHHHHHHHHSCCCCCSS
T ss_pred HHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh-----HHHHHHHHcCCeE--------EeHHHHHHHHhhCCCccccc
Confidence 567777777653211 34456778888988762 5788899999852 36799999999877666544
Q ss_pred E
Q 031035 100 G 100 (167)
Q Consensus 100 G 100 (167)
.
T Consensus 106 ~ 106 (112)
T 2ebu_A 106 E 106 (112)
T ss_dssp C
T ss_pred c
Confidence 3
No 42
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=82.37 E-value=6.6 Score=30.16 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=43.8
Q ss_pred CCCceEEEEEEC---CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVG---GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg---~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+...+++++.-. .++--..+.+...+.|++.|+++..... ..+.+...+.++.+.. ..|+||++.-
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgii~~~ 85 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG--KHSAEEERQAIQYLLD-LRCDAIMIYP 85 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECC--TTSHHHHHHHHHHHHH-TTCSEEEEEC
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHh-cCCCEEEEec
Confidence 345677877754 4555566777888999999998877643 3344555666777663 4699999964
No 43
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=81.59 E-value=6.6 Score=30.20 Aligned_cols=68 Identities=13% Similarity=-0.103 Sum_probs=44.0
Q ss_pred CCceEEEEEEC-C--CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 38 KVPGLAVVIVG-G--RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 38 ~~P~Laii~vg-~--d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.+.+++++.-. . ++--...++...+.|++.|..+.........+.++..+.++.+.. ..|+||++.-.
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~ 74 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAA 74 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCS
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCC
Confidence 34466666533 2 444455667888999999998877654323455556667777664 46999999644
No 44
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=81.50 E-value=8 Score=30.03 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=44.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+....+++|.--.+|--..+++...+.|++.|..+.......+..+ .+.++.+. ...|+||++.-.
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~l~-~~~vdgiIi~~~ 75 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAE---KVAVQALM-RERCEAAILLGT 75 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCH---HHHHHHHT-TTTEEEEEEETC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH---HHHHHHHH-hCCCCEEEEECC
Confidence 3455677776334555566678889999999999888776554443 34555554 357999999743
No 45
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=81.32 E-value=5.3 Score=30.82 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=48.7
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.-+|+.+||. |. .++.-+.+-..+.++++|+.|+....+...+.+++.+.+++..++ .+.-||.
T Consensus 10 ~m~~~V~Iim-GS-~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa 73 (174)
T 3kuu_A 10 AAGVKIAIVM-GS-KSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEAN-GLHVIIA 73 (174)
T ss_dssp CCCCCEEEEE-SS-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCSEEEE
T ss_pred cCCCcEEEEE-Cc-HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 4467666554 43 345667778889999999999999999999999999999887543 4555554
No 46
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=80.88 E-value=5 Score=29.98 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCceEEEEEECCCcchHHH---------HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSY---------VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y---------~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.++++.+||.+||.-....+ -.+..+..++.|+++..+..-.| +.+++.+.+..+.+....|-|+.--=+
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~D-d~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD-DKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 45679999999973211111 13467888999999877665433 567888899888777788889887654
No 47
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=80.63 E-value=4.8 Score=31.02 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=43.6
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...+++++.-+ +++-...+.+...+.|++.|.++.... ...+.+...+.++.+.. ..|+||++.-.
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~-~~vdgii~~~~ 72 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN--AWNNLEKQRAYLSMMAQ-KRVDGLLVMCS 72 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE--CTTCHHHHHHHHHHHHH-TTCSEEEEECS
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc--CCCChHHHHHHHHHHHh-CCCCEEEEEec
Confidence 345567776643 344455567788899999999887654 33455666667777654 46999998643
No 48
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=80.38 E-value=6.5 Score=30.80 Aligned_cols=64 Identities=8% Similarity=-0.048 Sum_probs=45.5
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCc---eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGI---KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi---~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.++++|..-++|--..-++...+.+++.|. .........+-+.+...+.+++|- +..|+||++.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~ 69 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLV-ANGNDLVVGI 69 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHT-TSSCSEEEEE
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEEC
Confidence 456766545567666777888899999998 655544445556667777888885 5579999985
No 49
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=80.37 E-value=10 Score=29.11 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=45.9
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.+.++++|.-+ +++--....+...+.|++.|+++...... .+.+...+.++.+.+ ..|+||++.-.-+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ--NSRISEREQILEFVH-LKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS--SCHHHHHHHHHHHHH-TTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC--CCHHHHHHHHHHHHH-cCCCEEEEecCCh
Confidence 455677776644 34445556778889999999998877543 355666677777654 4699999974433
No 50
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=80.29 E-value=7.4 Score=30.31 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=44.4
Q ss_pred ceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++++|.-+. ++--....+...+.|++.|+++.........+.+.-.+.++.+-.. .|+||++.-.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~ 70 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALAT-YPSGIATTIP 70 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHT-CCSEEEECCC
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 4566665443 4555556678889999999998877643223556666777776554 5999999633
No 51
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=80.20 E-value=5 Score=30.82 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=47.2
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|+.+|| .|. .++.-+.+-..+.++++|+.|+....+...+.+++.+.+++..++ .+.-||.
T Consensus 6 ~~~V~Ii-mgS-~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa 67 (169)
T 3trh_A 6 KIFVAIL-MGS-DSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNR-GCAVFIA 67 (169)
T ss_dssp CCEEEEE-ESC-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHT-TEEEEEE
T ss_pred CCcEEEE-ECc-HHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 4665554 453 345667778889999999999999999999999999999887554 4554554
No 52
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=79.99 E-value=4 Score=28.80 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 22 RSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
|+++++.++.+--+. .+.-+.-.+.+|+++. .+|.+.|+++||.. ++|++|++.|..
T Consensus 49 R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g-----~sK~~kA~~lgI~I--------i~E~~f~~ll~~ 107 (109)
T 2k6g_A 49 RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSG-----QSKSDKAAALGTKI--------IDEDGLLNLIRN 107 (109)
T ss_dssp HHHHHHHHHHTTCEEESSCCTTCCEEEECBCCC-----HHHHHHHHHHTCEE--------ECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEeeCcccCCceEEEECCCCC-----hHHHHHHHHcCCeE--------EeHHHHHHHHHh
Confidence 567777777653211 3445677788898876 26888999999852 377899998865
No 53
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=79.93 E-value=6.3 Score=30.10 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=46.7
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|+.+|| .|. .++.-+.+-..+.++++|+.|+....+..-+.+++.+..++..++ .+.-||.
T Consensus 3 ~~~V~Ii-mgs-~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa 64 (163)
T 3ors_A 3 AMKVAVI-MGS-SSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARER-GINIIIA 64 (163)
T ss_dssp CCCEEEE-ESC-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEE
T ss_pred CCeEEEE-ECc-HHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 3555554 453 345666777888999999999999999999999999999987653 3454554
No 54
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=79.68 E-value=9.7 Score=29.79 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=47.9
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
.++++|.-. .+|-.....+...+.|++.|+.+..... ..+.+.-.+.++.+... .|+||++.-.-+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA--NGNEETQMSQIENMINR-GVDVLVIIPYNGQV 71 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC--TTCHHHHHHHHHHHHHT-TCSEEEEECSSTTS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHc-CCCEEEEeCCChhh
Confidence 356666653 4677777888999999999999887754 33555556667766554 69999997554433
No 55
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=79.28 E-value=8.6 Score=29.56 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=44.9
Q ss_pred CCCceEEEEEEC------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVG------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+...++++|.-. .++--....+...+.|++.|..+..... +.+.+...+.++.+.+ ..|+||++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~vdgiIi~ 76 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTG--ETEEEIFNGVVKMVQG-RQIGGIILL 76 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCC--CSHHHHHHHHHHHHHT-TCCCEEEES
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHc-CCCCEEEEe
Confidence 456677777665 4566667778889999999998876543 3344555566666654 479999995
No 56
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=79.12 E-value=11 Score=29.26 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=48.0
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+|. +.|..|.+.+- -..+...+.++++||.|+....+..-+.+++.+.++...++ .+.-||.-
T Consensus 22 kp~-V~IimGS~SD~-~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~-g~~ViIa~ 84 (181)
T 4b4k_A 22 KSL-VGVIMGSTSDW-ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARER-GLKVIIAG 84 (181)
T ss_dssp CCS-EEEEESSGGGH-HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEE
T ss_pred Ccc-EEEEECCHhHH-HHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhc-CceEEEEe
Confidence 454 44566755554 44667788999999999999999999999999999887654 46666654
No 57
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=79.04 E-value=7.1 Score=30.31 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=46.5
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|+.+ |..|. .++.-+.+-..+.++++||.|+....+...+.+++.+..++..++ .+.-||.
T Consensus 21 ~~~V~-IimGS-~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa 82 (182)
T 1u11_A 21 APVVG-IIMGS-QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAER-GLNVIIA 82 (182)
T ss_dssp CCSEE-EEESS-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEE
T ss_pred CCEEE-EEECc-HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 46555 44553 355666777889999999999999999999999999999876543 3444554
No 58
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=78.61 E-value=15 Score=27.99 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=47.4
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
+...++++|.-+ +++--....+...+.|++.|..+....... +.+.-.+.++.+... .|+||++.-.-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~vdgiIi~~~~ 73 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA--DIEREKTLLRAIGSR-GFDGLILQSFS 73 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT--CHHHHHHHHHHHHTT-TCSEEEEESSC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 455677777644 344556667788899999999988876543 445556677777644 79999997543
No 59
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=78.17 E-value=7 Score=30.16 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=44.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...+++++.-+.++--....+...+.|++.|+.+..... +.+.+...+.++.+.. ..|+||++.-.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgiI~~~~ 72 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS--EENEDKQQDLIETFVS-QNVSAIILVPV 72 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC--TTCHHHHHHHHHHHHH-TTEEEEEECCS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHH-cCccEEEEecC
Confidence 4455677766543444455666778899999998877643 3344555566776653 46999999644
No 60
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=77.74 E-value=10 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=45.3
Q ss_pred CceEEEEEE----------CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIV----------GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~v----------g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
...+|+|.- .++.++..-++...+..+++|++++.+. +.+.+++.+.|+++.+.+
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~---dlt~~em~~~l~~~~~~d 107 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVS 107 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSC
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHhhhh
Confidence 346887753 4567889999999999999999998885 779999999999987643
No 61
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=77.26 E-value=15 Score=29.29 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=44.6
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.-+++++.-.....|...++..++.+++.|+++..+... +.+++...++.+..+ ++++.+
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~l~~~--~d~i~~ 199 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL---KSADVQSATQAIAEK--SDVIYA 199 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS---SGGGHHHHHHHHHTT--CSEEEE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC---ChHHHHHHHHhccCC--eeEEEE
Confidence 346777765556677888889999999999998877654 346677777777654 777765
No 62
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=77.19 E-value=13 Score=28.59 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=45.2
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCce-eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIK-SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+.+.+++++.-+ .++--..+.+...+.|++.|.. ....... .+.+.-.+.++.+... .|+||++.-
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~~l~~~-~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTN--SDVKKYQNAIINFENN-NVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSS--CCHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCC--CChHHHHHHHHHHHhC-CCCEEEEcc
Confidence 456677777654 3555666778899999999998 7665443 3445555556666543 699999974
No 63
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=77.09 E-value=7.7 Score=30.75 Aligned_cols=65 Identities=8% Similarity=-0.054 Sum_probs=42.4
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHc-CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+.+.+++++....++-...+.+...+.|++. |+++...... .+.+.-.+.++.+-. ..|+||++.
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~--~~~~~~~~~i~~l~~-~~vdgiIi~ 69 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAG--DDNSKQAEDVHYFMD-EGVDLLIIS 69 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECT--TCHHHHHHHHHHHHH-TTCSEEEEC
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 4566777776554444445566778889898 9988776533 344555566777654 469999996
No 64
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=76.92 E-value=14 Score=28.63 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=44.9
Q ss_pred CCCceEEEEEE-----CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIV-----GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~v-----g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...++++|.- -.+|--...++...+.|++.|..+..........+.++++.+.. ..|+|||+.-+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~vdGiIi~~~ 74 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET----RRVDALIVAHT 74 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH----TCCSEEEECSC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc----CCCCEEEEeCC
Confidence 45667887775 24455556677888999999999988876543344555555543 36999999644
No 65
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=76.86 E-value=8.6 Score=29.38 Aligned_cols=65 Identities=5% Similarity=-0.035 Sum_probs=43.2
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+...+++++.-+ +++-...+.+...+.|++.|..+....... +.+.-.+.++.+... .|+||++.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~~dgiIi~ 71 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN--DIKKAQGYLATFVSH-NCTGMIST 71 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT--CHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHhC-CCCEEEEe
Confidence 344567766654 355566677888999999999988776543 445555666666543 69999995
No 66
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=76.72 E-value=9.5 Score=29.59 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+..-++++|.-. +++--..+++...+.|++.|..+..... ..+.+...+.++.+.. ..|+||++.-
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgiIi~~ 80 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS--DQNMEKELHLLNTMLG-KQVDGIVFMG 80 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHH-TTCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHh-CCCCEEEEec
Confidence 445567766643 3455556677888999999998876643 3344555566666653 4699999963
No 67
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=76.58 E-value=7.7 Score=29.33 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+...+.|+++|++++.++- -.|.++++.|++. ..+++||++-
T Consensus 38 ~~~l~~~a~~~g~~~~~~QS---N~EgeLId~Ih~a--~~~~dgiiIN 80 (153)
T 3lwz_A 38 VSQLEIQAQGMDVALSHLQS---NAEHALIDSIHQA--RGNTDFILIN 80 (153)
T ss_dssp HHHHHHHHHHTTEEEEEEEC---SCHHHHHHHHHHH--TTTCSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEec---CCHHHHHHHHHHh--hhcCceEEEc
Confidence 66778889999999887763 3789999999997 3559999996
No 68
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=76.36 E-value=23 Score=27.48 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=46.3
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..|. +.|..|. .++.-+.+-..+.++++|+.++....+...+.+++.+..++..+ ..+.-||.
T Consensus 12 ~~~~-V~IimGS-~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~-~g~~ViIa 74 (183)
T 1o4v_A 12 HVPR-VGIIMGS-DSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEE-RGIEVIIA 74 (183)
T ss_dssp --CE-EEEEESC-GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTT-TTCCEEEE
T ss_pred CCCe-EEEEecc-HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 4564 4455563 35566677788999999999999999999999999999988644 34555554
No 69
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=74.99 E-value=8.7 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|++.|++++.++ +-.|.++++.|++.-. +++||++-
T Consensus 30 i~~~l~~~a~~~g~~~~~~Q---SN~EgeLid~Ih~a~~--~~dgiiiN 73 (143)
T 1gqo_A 30 IETDLFQFAEALHIQLTFFQ---SNHEGDLIDAIHEAEE--QYSGIVLN 73 (143)
T ss_dssp HHHHHHHHHHHHTCEEEEEE---CSCHHHHHHHHHHHTT--TCSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCCHHHHHHHHHHhhh--cCcEEEEc
Confidence 45677788999999888776 3478999999999843 49999986
No 70
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=74.82 E-value=11 Score=29.14 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=47.7
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..+|+.+||.-+ .++.-+.+-..+.++++|+.|+....+..-+.+++.+.+++..++ .+.-||.
T Consensus 5 ~~~~~V~IimgS--~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa 68 (174)
T 3lp6_A 5 GERPRVGVIMGS--DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAAR-GLEVIIA 68 (174)
T ss_dssp -CCCSEEEEESC--GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHH-TCCEEEE
T ss_pred CCCCeEEEEECc--HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 346776655443 345666778889999999999999999999999999999887643 3444544
No 71
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=74.51 E-value=15 Score=28.23 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=43.6
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+...+++++.-. .++--..+.+...+.|++.|..+..... +.+.+...+.++.+.. ..|+||++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgiI~~ 71 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT--ESDLARSRSCLTLLSG-KMVDGVITM 71 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHTHHHHT-TCCSEEEEC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHh-CCCCEEEEe
Confidence 455677777643 3444556667888999999998877653 2344555566777654 469999995
No 72
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=74.14 E-value=11 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc
Q 031035 22 RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN 93 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 93 (167)
.+.+++.++.+.++.|.+|++.+-.+|.| .-..=.+......+..|+++. .++.+.+.+++++...+-+
T Consensus 579 fe~Lr~~~~~~~~~~g~r~kVvlatvg~D-~HdiG~~iVa~~l~~~GfeVi--~lG~~v~~eeiv~aA~e~~ 647 (727)
T 1req_A 579 VEEARELVEEFEQAEGRRPRILLAKMGQD-GHDRGQKVIATAYADLGFDVD--VGPLFQTPEETARQAVEAD 647 (727)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEEECBTTC-CCCHHHHHHHHHHHHHTCEEE--ECCTTBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCcc-hhHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHHcC
Confidence 46677777777655588999999999988 444445666778888999874 5788889999999988753
No 73
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=74.05 E-value=9.1 Score=28.96 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|+++|++++.++ +-.|.++++.|++.-. +++||++-
T Consensus 31 i~~~l~~~a~~~g~~l~~~Q---SN~EGeLId~Ih~a~~--~~dgiIIN 74 (154)
T 1uqr_A 31 IEQHLQQSAQAQGYELDYFQ---ANGEESLINRIHQAFQ--NTDFIIIN 74 (154)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---CSSHHHHHHHHHHTTT--TCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe---eCCHHHHHHHHHHhhh--cCcEEEEC
Confidence 45677788999999988776 3478999999999743 59999986
No 74
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=73.98 E-value=4.5 Score=35.85 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.9
Q ss_pred eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 71 ~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
++++-.+--.|.+++.+..+++|.+++|+||+++++-.
T Consensus 46 ~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TF 83 (500)
T 4f2d_A 46 CKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTF 83 (500)
T ss_dssp SEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSC
T ss_pred eEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcC
Confidence 34444444557788999999999899999999988754
No 75
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=73.83 E-value=6.6 Score=31.44 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=30.6
Q ss_pred CCCceEEEEEECCCcchHHH----HHHHHHHHHHcCceeeeecCCCC--CCHHHHHHHHHHh
Q 031035 37 GKVPGLAVVIVGGRKDSQSY----VSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHEL 92 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y----~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~l 92 (167)
|..+.-.....+.+.+|-.| .+...+.|+.+||....+.++.. ...+++.+.++++
T Consensus 28 G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~ 89 (237)
T 3rjz_A 28 RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGL 89 (237)
T ss_dssp TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTS
T ss_pred CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhc
Confidence 66654444566766555444 34677899999999999999753 2234555555544
No 76
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=73.38 E-value=10 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-..+...+.|+++|++++.++ +-.|.++++.|++.- +..++||++-
T Consensus 28 di~~~l~~~a~~~g~~v~~~Q---SN~EgeLId~Ih~a~-~~~~dgiIIN 73 (149)
T 2uyg_A 28 ELEALCEAWGAELGLGVVFRQ---TNYEGQLIEWVQQAH-QEGFLAIVLN 73 (149)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE---CSCHHHHHHHHHHTT-TTTCSEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEe---eCCHHHHHHHHHHhc-cCCeeEEEEc
Confidence 355677888999999988776 347899999999873 3349999986
No 77
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=73.38 E-value=12 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=41.9
Q ss_pred CceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 39 VPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+-++++|.-+ +++-.....+...+.|++.|+++...... .+.+.-.+.++.+.. ..|+||++.
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgiIi~ 68 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG--RNDQTQVSQIQTLIA-QKPDAIIEQ 68 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT--TCHHHHHHHHHHHHH-HCCSEEEEE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC--CCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 3456666554 23444556778899999999988877543 344555566666654 369999986
No 78
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=73.35 E-value=15 Score=27.66 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCceEEEEEECCC-----------cchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVGGR-----------KDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~d-----------~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-.+|+.+||.+||. .+++.|. ....+++.|++...+. +|+ +.+++.+.|+++-++...|-|++-
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~--L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDI--IKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHH--HHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHH--HHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEC
Confidence 56899999999962 2566664 6788899999887664 444 568899999988766567888876
Q ss_pred CC
Q 031035 105 LP 106 (167)
Q Consensus 105 ~P 106 (167)
-=
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 79
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=73.26 E-value=12 Score=29.36 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred ceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.++++|.-.- ++--....+...+.|++.|+++....- +.+.+.-.+.++.+-+. .|+||++.-
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~~~~~-~vdgiIi~~ 67 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA--DDDIPNQLSQIENMVTK-GVKVLVIAS 67 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHH-TCSEEEECC
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC--CCCHHHHHHHHHHHHHc-CCCEEEEEc
Confidence 4666666543 455556677889999999999887763 34555556666666543 599999863
No 80
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=73.16 E-value=12 Score=34.91 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc
Q 031035 21 IRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN 93 (167)
Q Consensus 21 i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 93 (167)
-.+.+++.++.+.++.|.+|++.+-.+|.| .-..=.+......+..|+++. .++.+.+.+++++...+-+
T Consensus 586 ~fe~lr~~~~~~~~~~g~r~kVvlatvg~D-~HdiG~~iVa~~l~~~GfeVi--~lG~~v~~eeiv~aA~e~~ 655 (762)
T 2xij_A 586 EITSAIKRVHKFMEREGRRPRLLVAKMGQD-GHDRGAKVIATGFADLGFDVD--IGPLFQTPREVAQQAVDAD 655 (762)
T ss_dssp HHHHHHHHHHHHHHHHSSCCEEEEECCSSC-CCCHHHHHHHHHHHHTTCEEE--ECCTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCcc-hhhHHHHHHHHHHHhCCeEEe--eCCCCCCHHHHHHHHHHcC
Confidence 346777778777655588999999999998 444445566677888999874 5788889999999988753
No 81
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.01 E-value=17 Score=27.91 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=44.9
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...+++++.-+ .++-.....+...+.|++.|+.+....... +.+...+.++.+.. ..|+||++.-.
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~~~ 73 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE--DIVREREAVGQFFE-RRVDGLILAPS 73 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHHHHHH-TTCSEEEECCC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHH-CCCCEEEEeCC
Confidence 455677776643 234455667788899999999988876543 44555666666654 36999998643
No 82
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=72.97 E-value=15 Score=28.36 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=43.0
Q ss_pred CceEEEEEECCC-cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 39 VPGLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 39 ~P~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|++++|-.+.. ++...|+++-.++.+++|++++...+.. .+.+++.+.|++ .++|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~~------ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLRK------NDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHHH------SSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHHh------CCEEEE
Confidence 388888865433 3445799999999999999988887654 466777777765 467776
No 83
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=72.69 E-value=10 Score=29.80 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=46.8
Q ss_pred CCceEEEEEECCCc------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 38 KVPGLAVVIVGGRK------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 38 ~~P~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.-.++.+|....+. -+...++...+.+++.|.+++.+.+.+..+-++..+.|+. -|+|+++.|+--
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~------aD~iv~~~P~y~ 95 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLW------ADTIIYQMPAWW 95 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHH------CSEEEEEEECBT
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHh------CCEEEEECChHh
Confidence 34566777766653 2355667777778888999999999876665555555554 379999999864
No 84
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=72.58 E-value=20 Score=27.16 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=42.6
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++++|.-. .+|--..+.+...+.|++.|..+...... .+.+...+.++.+.. ..|+||++.-+
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSD--YSIEQEEKLLSTFLE-SRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECT--TCHHHHHHHHHHHHT-SCCCCEEEESS
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCC--CCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 456666543 34555566778889999999987766433 344555666777654 46999998743
No 85
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=72.02 E-value=22 Score=26.37 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 38 KVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 38 ~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.+|+.+||.+|+.- +++.|. .....++.|++...+.. |+ +.+++.+.|+++-++...|=|++-==
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~--l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQL--LHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHH--HHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred cCCEEEEEEEcCccCeeccChHHH--HHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 47899999999753 455553 66778888998766543 43 56889999999877556788887643
No 86
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=72.01 E-value=10 Score=29.76 Aligned_cols=66 Identities=9% Similarity=-0.129 Sum_probs=40.2
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCc----eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI----KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+.++++|.--.+|--..-++...+.+++.|. .+.......+-+.+...+.+++|- +..|+||++.
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~ 76 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGI 76 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEEE
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHH-hCCCCEEEEC
Confidence 34566666433455555566777788888887 444433344445556666677775 4568888774
No 87
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=71.54 E-value=15 Score=28.67 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=43.1
Q ss_pred CCCceEEEEEEC------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVG------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+...++++|.-. .++--....+...+.|++.|..+..... +.+.+...+.++.+.+ ..|+|||+.-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgiIi~~ 91 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVS--ENSGDLYHEVKTMIQS-KSVDGFILLY 91 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCC--SSHHHHHHHHHHHHHT-TCCSEEEESS
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHh-CCCCEEEEeC
Confidence 445667766554 3444556677888999999998876543 3334444556666554 4799999953
No 88
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=71.20 E-value=23 Score=26.80 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=41.0
Q ss_pred EEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 43 AVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 43 aii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
+.|..|. .++.-+.+-..+.++++|+.|+....+...+.+++.+..++..+
T Consensus 2 V~Iimgs-~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~ 52 (157)
T 2ywx_A 2 ICIIMGS-ESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA 52 (157)
T ss_dssp EEEEESS-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC
T ss_pred EEEEEcc-HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC
Confidence 4556664 34556666778899999999999999999999999999887654
No 89
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=70.20 E-value=15 Score=28.29 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=42.6
Q ss_pred ceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.++++|.-.- +|-.....+...+.|++.|+++....- . +.++-.+.++.+-+. .|+||++.-
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~-~~~~~~~~i~~l~~~-~vdgiii~~ 65 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--P-DGEKTLNAIDSLAAS-GAKGFVICT 65 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--C-SHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--C-CHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 3556554332 455556667888999999998876643 2 556667778777665 499999963
No 90
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=68.70 E-value=11 Score=29.11 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=41.9
Q ss_pred CCceEEEEEEC-----CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 38 KVPGLAVVIVG-----GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 38 ~~P~Laii~vg-----~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.+.++++|.-. .+|--...++...+.|++.|..+.......+ .+.-.+.++.+.. ..|+||++.-+
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~-~~vdgiIi~~~ 73 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSED--RSQIDIYRDLIRS-GNVDGFVLSSI 73 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSS--TTCCHHHHHHHHT-TCCSEEEECSC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCc--hHHHHHHHHHHHc-CCCCEEEEeec
Confidence 34567766654 4566667778889999999998776543222 2222344555543 46999999643
No 91
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=68.68 E-value=31 Score=25.02 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=51.2
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.+++.||.....-.++..++...+.+++.|++++.+.+.+..+.+++...+.+ -++|++=-|.-.
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~d~ii~Gspty~ 68 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGR------CTGLVIGMSPAA 68 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHT------EEEEEEECCBTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHh------CCEEEEEcCcCC
Confidence 45788888888888999999999999999999999998754255666555443 379999988764
No 92
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=68.33 E-value=28 Score=26.02 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=40.8
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++++|.-. ++|--..+.+...+.|++.|..+...... .+.+.-.+.++.+.. ..|+||++.-
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgiI~~~ 66 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQ--FSPQLVAEHLGVLKR-RNIDGVVLFG 66 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEECT--TCHHHHHHHHHHHHT-TTCCEEEEEC
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeCC--CcHHHHHHHHHHHHh-cCCCEEEEec
Confidence 45555532 24444556678889999999988776533 344555566777654 4699999974
No 93
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=68.28 E-value=23 Score=28.26 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=40.5
Q ss_pred CceEEEEEE-CC--C-cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 39 VPGLAVVIV-GG--R-KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~v-g~--d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++++|.- |+ | +=...-.+...+.+++.|+++....-..+ ++..+.++.+-+ ..++||++.-+
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~~---~~~~~~l~~l~~-~~~dgIi~~~~ 71 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTD---AEYVPSLSAFAD-ENMGLVVACGS 71 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSG---GGHHHHHHHHHH-TTCSEEEEEST
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCCH---HHHHHHHHHHHH-cCCCEEEECCh
Confidence 456777773 43 2 33344456788899999998877654322 223456666654 46999998643
No 94
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=67.98 E-value=22 Score=26.63 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.+.++..-++...+..+++|++++.+. +.|.+++.+.|+++.+.
T Consensus 49 ~R~Gt~~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 49 DRNGTHLDAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLM 92 (164)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHh
Confidence 566789999999999999999988874 67889999999988544
No 95
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=67.69 E-value=36 Score=25.50 Aligned_cols=64 Identities=6% Similarity=0.013 Sum_probs=43.5
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
+++++.-+ +++-...+.+...+.|++.|..+....... +.+...+.++.+... .|+||++.-.-
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~vdgiIi~~~~ 68 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD--QPDSERQLQQLFRAR-RCDALFVASCL 68 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHHHHHHT-TCSEEEECCCC
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHHc-CCCEEEEecCc
Confidence 45555543 345556667888999999999998876543 445556666666543 79999986443
No 96
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=67.41 E-value=28 Score=26.16 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred CCCceEEEEEECC----------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 37 GKVPGLAVVIVGG----------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 37 g~~P~Laii~vg~----------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
....++|+|.-.. ++++..-++...+..+++|++++.+. +.|.+++.+.|+++.+
T Consensus 30 ~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 30 SRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLC---DQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp CSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEE---SCCHHHHHHHHHHHHT
T ss_pred CCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHhhh
Confidence 3457888887554 45788999999999999999988774 6789999999999987
No 97
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=67.24 E-value=30 Score=24.37 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ 79 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~ 79 (167)
++++.-+++|.++ ...+++++.|. +.-++...+++.+++|..+-.+-+.++
T Consensus 36 qelkdsieelvkk--ynativvvvvd----dkewaekairfvkslgaqvliiiydqd 86 (134)
T 2l69_A 36 QELKDSIEELVKK--YNATIVVVVVD----DKEWAEKAIRFVKSLGAQVLIIIYDQD 86 (134)
T ss_dssp HHHHHHHHHHTTC--CCCEEEEEECS----SHHHHHHHHHHHHHHCCCCEEEEECSC
T ss_pred HHHHHHHHHHHHH--hCCeEEEEEEc----cHHHHHHHHHHHHhcCCeEEEEEEeCc
Confidence 5778888888765 44677777776 356777788888999988877776553
No 98
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=67.12 E-value=7.7 Score=29.11 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|++.|++++.++ +-.|.++++.|++.-.+ ++||++-
T Consensus 32 i~~~l~~~a~~~g~~~~~~Q---SN~EgeLId~Ih~a~~~--~dgiiIN 75 (146)
T 1h05_A 32 LVALIEREAAELGLKAVVRQ---SDSEAQLLDWIHQAADA--AEPVILN 75 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHHHHHH--TCCEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCCHHHHHHHHHHhhhc--CcEEEEC
Confidence 45677788999999988776 34789999999998543 8999986
No 99
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=67.12 E-value=36 Score=26.35 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=41.7
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-++++|.-..+..+..-.+.-++++++.|+++...... +.++..+.+++|-. .+++|+..
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~---~~~~~~~~~~~l~~--~~dai~~~ 193 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP---STNEIASTVTVMTS--KVDAIWVP 193 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES---SGGGHHHHHHHHTT--TCSEEEEC
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC---CHHHHHHHHHHHHh--cCCEEEEC
Confidence 37887765544445555667788999999988765443 23567788888864 58999883
No 100
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=66.68 E-value=16 Score=28.84 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=41.5
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC-CCcEEEEe
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP-DVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~-~V~GIlvq 104 (167)
+.+.++++|.-. .++-....++...+.|++.|+++...... .+.+.-.+.++.+-... +|+|||+.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~--~~~~~~~~~i~~l~~~~~~vdgiIi~ 70 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTE--GSSEKGIADIRALLQKTGGNLVLNVD 70 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECT--TCHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCC--CCHHHHHHHHHHHHHCCCCCCEEEEe
Confidence 344566666542 34445556677888999999988776432 34444455566655433 29999985
No 101
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=65.61 E-value=34 Score=26.08 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=41.2
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+++++.-. +++-...+.+...+.|++.|+.+..... ..+.++..+.++.+.. ..|+||++.-.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdgiI~~~~ 67 (290)
T 2fn9_A 4 KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS--QNDTAKESAHFDAIIA-AGYDAIIFNPT 67 (290)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC--CCCHHHHHHHHHHHHH-cCCCEEEEecC
Confidence 45555432 3455556677888899999998876543 3345555666777664 46999999743
No 102
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=65.29 E-value=5.6 Score=30.52 Aligned_cols=66 Identities=6% Similarity=0.016 Sum_probs=45.0
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
++.+|....++.+..+.+...+.+++.|.+++.+.|.+.- ...++.+.++++.+- |+|+++.|+--
T Consensus 3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~A---D~iv~~~P~y~ 70 (192)
T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETH---DSLVWQFPIYW 70 (192)
T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTS---SSEEEEEECBT
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhC---CEEEEEcChhh
Confidence 4566666767665567888888899999988888774310 113455555555444 69999999864
No 103
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=65.26 E-value=8.5 Score=29.17 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.|+++|++++.++ +-.|.++++.|++.-. +++||++-
T Consensus 36 i~~~l~~~a~~~g~~v~~~Q---SN~EGeLId~Ih~a~~--~~dgiIIN 79 (156)
T 1gtz_A 36 VEALCVKAAAAHGGTVDFRQ---SNHEGELVDWIHEARL--NHCGIVIN 79 (156)
T ss_dssp HHHHHHHHHHTTTCCEEEEE---CSCHHHHHHHHHHHHH--HCSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCCHHHHHHHHHHhhh--cCcEEEEC
Confidence 45677788999999888776 3478999999999854 48999986
No 104
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=65.09 E-value=22 Score=27.28 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=38.5
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.+.++++|.-+ .++-.....+...+.|++.|..+... .... +.+...+.++.+.. ..|+||++.-+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiI~~~~ 74 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSA--DPEEQKHALLTAIE-RPVMGILLLSI 74 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC------------CHHHHHHS-SCCSEEEEESC
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHHHHh-cCCCEEEEecc
Confidence 445667776543 34445556677889999999988765 3322 22333455666654 46999998644
No 105
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=64.83 E-value=44 Score=25.56 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=44.0
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...++++|.-. .++--....+...+.|++.|+.+...... .+.+...+.++.+.. ..|+||++.-.
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgii~~~~ 85 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE--DQPDNEMRCIEHLLQ-RQVDAIIVSTS 85 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECT--TCHHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCC--CCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 455677777642 34444556678889999999988766532 244445556666653 36999999643
No 106
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=64.13 E-value=29 Score=26.74 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=39.2
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
++++|.-. ++|--....+...+.|++.|+.+.....+.+.+.+.-.+.++.+-. ..|+||++.-
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~ 67 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSN-KNYKGIAFAP 67 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 34444422 2333344556778899999988776652233344555566777654 4699999963
No 107
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=63.92 E-value=14 Score=26.75 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCC--C---------cEEEEeCCCCCCCCHHHHHhcCC
Q 031035 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPD--V---------HGILVQLPLPKHINEEKVLGEIS 121 (167)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~--V---------~GIlvq~PLP~~id~~~i~~~I~ 121 (167)
+...+..++.||.++.++.|...|-+++.+.+ +-++. + .=+++..|--.++|..++.+.+.
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~l---g~~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~~kl~~~lg 76 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASA---HVSGKQLAKTVIIKMDGRLAMVVLPASDHITFMKLKEAIG 76 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC-------CCSSCCEEEEEEEETTEEEEEEEETTCCCCHHHHHHHHS
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHc---CCChhheEEEEEEEECCeEEEEEECCCCeECHHHHHHHhC
Confidence 46778889999999999888877766665543 32321 0 12677788889999999988876
No 108
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=63.77 E-value=25 Score=27.68 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=41.4
Q ss_pred CceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 39 VPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..+++++.-. +++--....+...+.|++.|+++.... +.+.+.+.-.+.|+.+-. ..|+||++.-.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~-~~~~d~~~q~~~i~~li~-~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG-PTEPSVSGQVQLVNNFVN-QGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC-CSSCCHHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC-CCCCCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 3456655432 234344455677888999998776532 344555666677777653 36999998633
No 109
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=63.49 E-value=19 Score=27.94 Aligned_cols=65 Identities=8% Similarity=0.012 Sum_probs=43.3
Q ss_pred CCCceEEEEEEC------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVG------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+....+++|.-. .+|--...++...+.|++.|..+..... +.+.+.-.+.++.+.. ..|+|||+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~-~~vdGiI~~ 75 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVS--NNMNDLMDEVYKMIKQ-RMVDAFILL 75 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCC--CSHHHHHHHHHHHHHT-TCCSEEEES
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcC--CCChHHHHHHHHHHHh-CCcCEEEEc
Confidence 556677777532 3455556677889999999998876543 2233444556666654 479999996
No 110
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=63.23 E-value=33 Score=26.45 Aligned_cols=66 Identities=8% Similarity=-0.003 Sum_probs=43.9
Q ss_pred CCCceEEEEEECC-CcchH-HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVGG-RKDSQ-SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg~-d~as~-~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+....+++|.-.- ++--. ..++...+.|++.|..+....... +.+.-.+.++.+.. ..|+|||+.-
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~-~~vdGiIi~~ 78 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGG--SSEREVEIWKMFQS-HRIDGVLYVT 78 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHHHHHH-TTCSEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCC--ChHHHHHHHHHHHh-CCCCEEEEec
Confidence 4456677666443 23334 678899999999999988776433 44444556666654 3699999864
No 111
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=62.99 E-value=21 Score=27.70 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=39.5
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+++++.-. +++-...+.+...+.|++.|..+..... ..+.+.-.+.++.+.. ..|+|||+.-
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~--~~~~~~~~~~i~~l~~-~~vdgiIi~~ 66 (306)
T 2vk2_A 4 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVA-QGVDAIFIAP 66 (306)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHHH-HTCSEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC--CCCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 56666553 2333444566778899999998877643 2344555566666654 3699999863
No 112
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=62.83 E-value=20 Score=27.90 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=46.5
Q ss_pred eEEEEEECCCcch--HHHHHHHHHHHHHcCceeeeecCCCCC-----C-----------------------------HHH
Q 031035 41 GLAVVIVGGRKDS--QSYVSMKRKACAEVGIKSFDIDLPEQV-----S-----------------------------EAE 84 (167)
Q Consensus 41 ~Laii~vg~d~as--~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-----~-----------------------------~~e 84 (167)
++.+|....++.| ..-++...+.+++.|.+++.+.|.+.- + .++
T Consensus 3 kiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd 82 (228)
T 3tem_A 3 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASD 82 (228)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHH
Confidence 5667777777764 455667777778889999999885421 0 256
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 85 LISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 85 l~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
+.+..+++.+- |+|+++.|+--.
T Consensus 83 ~~~~~~~l~~a---D~iv~~~P~y~~ 105 (228)
T 3tem_A 83 ITDEQKKVREA---DLVIFQFPLYWF 105 (228)
T ss_dssp HHHHHHHHHHC---SEEEEEEECBTT
T ss_pred HHHHHHHHHhC---CEEEEECChhhc
Confidence 66666666543 799999999643
No 113
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=62.49 E-value=35 Score=25.33 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=46.9
Q ss_pred CCceEEEEEECCCc----chHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 38 KVPGLAVVIVGGRK----DSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 38 ~~P~Laii~vg~d~----as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.+|+.+||.+|+.- +++.| ......++.|+++..+. +|+ +.+++.+.|+++-++...|=|++-==+
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~--~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGH--YLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHH--HHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCCEEEEEEEeCCCCcccCccHH--HHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 46899999999763 34444 36777888999877654 444 568899999887665456777776433
No 114
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=61.92 E-value=39 Score=25.59 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred CceEEEEEECC----------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVGG----------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg~----------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
...+|+|.-.. +.++..-++...+..+++|++++.+. +.|.+++.+.|+++.+.+
T Consensus 43 ~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~---dlt~~em~~~l~~~s~~d 107 (173)
T 2ql9_A 43 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEED 107 (173)
T ss_dssp EEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHTSC
T ss_pred CceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhh
Confidence 34577776443 45799999999999999999998885 678999999999987664
No 115
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=61.72 E-value=17 Score=27.66 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=41.3
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+...+++++.-+ +++-.....+...+.|++.|..+...... +. +...+.++.+.+ ..|+||+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~--~~~~~~~~~l~~-~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TS--QAGTDPITSALS-MRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SS--CSSSCHHHHHHT-TCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-Cc--hHHHHHHHHHHh-CCCCEEE
Confidence 445567776643 45666777888999999999999888766 22 222334444433 4799999
No 116
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=61.54 E-value=29 Score=26.58 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=39.8
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+++++.-. .++-.....+...+.|++.|+++..+. +...+.+...+.++.+-. ..|+||++.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~-~~vdgiii~ 68 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG-PSSTDAPQQVKIIEDLIA-RKVDAITIV 68 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC-CSSSCHHHHHHHHHHHHH-TTCSEEEEC
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC-CCCCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 345555422 234445556778889999998876433 334455666667777654 469999985
No 117
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=61.52 E-value=19 Score=26.99 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=44.5
Q ss_pred CCceEEEEEECCCc------chHHHHHHHHHHHH---HcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 38 KVPGLAVVIVGGRK------DSQSYVSMKRKACA---EVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 38 ~~P~Laii~vg~d~------as~~Y~~~k~k~~~---~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.+|+.+||.+|+.. +++.|. .....+ +.|+++....+|+ +.+++.+.|+++-++...|=|++--=+
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~--l~~~l~~l~~~G~~v~~~iv~D--d~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKA--IIDYLKDVIITPFEVEYRVIPD--ERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHH--HHHHHHHHBCSCCEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHH--HHHHHHHHHhCCCEEEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 47899999998752 445443 445455 8999885445554 568888899887654457778876433
No 118
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=61.10 E-value=25 Score=27.82 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=51.1
Q ss_pred CCceEEEEEECCCcch--HHHHHHHHHHHHHcCceeeeecCCCCC-------CHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 38 KVPGLAVVIVGGRKDS--QSYVSMKRKACAEVGIKSFDIDLPEQV-------SEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 38 ~~P~Laii~vg~d~as--~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-------~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
..+++.+|.-..++.| ..-++...+.+++.|++++.+.+.+.- ..+++.+.++++.+- |||++..|..
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~A---D~iI~~sP~Y 109 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWS---EGQVWVSPER 109 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHC---SEEEEEEECS
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHC---CEEEEEeCCC
Confidence 3457777766666544 445677778888889999999885531 123344444444433 6999999997
Q ss_pred CCCCH---HHHHhcCC
Q 031035 109 KHINE---EKVLGEIS 121 (167)
Q Consensus 109 ~~id~---~~i~~~I~ 121 (167)
.+-=. +.+++.+.
T Consensus 110 n~sipa~LKn~iD~l~ 125 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIP 125 (247)
T ss_dssp SSSCCHHHHHHHHTSC
T ss_pred CCCccHHHHHHHHHhh
Confidence 65333 34455553
No 119
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=61.01 E-value=7.7 Score=26.43 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=46.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~--g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
..+.|.- .. -|+++++.++.+--+. .+.-+.-.+.+|++++ +|.+.|+++||. -++++++++
T Consensus 13 ~v~TG~l-~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g------sK~~kA~~lgI~--------Ii~E~~f~~ 76 (92)
T 1l7b_A 13 FVITGEL-SR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPG------SKLEKARALGVP--------TLTEEELYR 76 (92)
T ss_dssp EECSTTT-TS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS------TTHHHHHCSSSC--------CEEHHHHHH
T ss_pred EEEecCC-CC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC------hHHHHHHHcCCc--------EEeHHHHHH
Confidence 4566653 22 4677777777663211 3445677778898764 477889999985 246789999
Q ss_pred HHHHhcCC
Q 031035 88 KVHELNVM 95 (167)
Q Consensus 88 ~I~~lN~D 95 (167)
.|+....+
T Consensus 77 ~l~~~~g~ 84 (92)
T 1l7b_A 77 LLEARTGK 84 (92)
T ss_dssp HHHHHHCS
T ss_pred HHHhccCc
Confidence 99876654
No 120
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=61.01 E-value=39 Score=25.90 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=40.8
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH---HHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS---KVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~---~I~~lN~D~~V~GIlvq~P 106 (167)
+...++++|.-. .++--..+.+...+.|++.|..+.......+... ..+ .++.+.. ..|+||++.-+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~~vdgiIi~~~ 76 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTP--REQALEAVRFLIG-RDCDGVVVISH 76 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCH--HHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhh--hhhHHHHHHHHHh-cCccEEEEecC
Confidence 445567766532 3444455667888999999999887655433322 223 4555542 46999999643
No 121
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=60.87 E-value=11 Score=28.90 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
.+...+.|+++|++++.++- -.|.++++.|.+.- .+++||++--==..|.. -.+.++|
T Consensus 59 ~~~l~~~a~~~G~~l~~~QS---N~EGeLId~Ih~A~--~~~dgIIINPgAyTHtS-vAlrDAL 116 (172)
T 3n8k_A 59 VALIEREAAELGLKAVVRQS---DSEAQLLDWIHQAA--DAAEPVILNAGGLTHTS-VALRDAC 116 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEC---SCHHHHHHHHHHHH--HHTCCEEEECGGGGGTC-HHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEec---CCHHHHHHHHHHhh--hcCcEEEECcchhhhhh-HHHHHHH
Confidence 67788889999999887763 37899999999974 45999999621122332 2455555
No 122
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=60.52 E-value=24 Score=28.63 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=45.3
Q ss_pred eEEEEEECCCcchHHH--HHHHHHHHHHcCceeeeecCCCC---------------------------------CCHHHH
Q 031035 41 GLAVVIVGGRKDSQSY--VSMKRKACAEVGIKSFDIDLPEQ---------------------------------VSEAEL 85 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y--~~~k~k~~~~~Gi~~~~~~l~~~---------------------------------~~~~el 85 (167)
+..||..-.++.|..+ .+.-.+.+++.|-+++++.|.+. ....++
T Consensus 24 KiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 103 (280)
T 4gi5_A 24 KVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADI 103 (280)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHH
Confidence 5666666667766444 45567788899999999988542 112467
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCC
Q 031035 86 ISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 86 ~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
.+..+++..- |.|+++.|+-
T Consensus 104 ~~~~~~l~~a---D~iv~~~P~~ 123 (280)
T 4gi5_A 104 VAEQEKLLWA---DTVIFQFPLW 123 (280)
T ss_dssp HHHHHHHHHC---SEEEEEEECB
T ss_pred HHHHHHHHhC---CEEEEEeccc
Confidence 7777776644 6999999984
No 123
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=60.37 E-value=56 Score=25.22 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=43.1
Q ss_pred CCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 38 KVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 38 ~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
....+++|.-. .+|--...++...+.|++.|..+....... +.+.-.+.++.+.+. .|+|||+.-.
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~vdgiI~~~~ 80 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA--PPRGTQQLSRLVSEG-RVDGVLLQRR 80 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS--TTHHHHHHHHHHHSC-SSSEEEECCC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC--ChHHHHHHHHHHHhC-CCcEEEEecC
Confidence 34456666543 344556677888999999999988776543 334445666666544 6999999643
No 124
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=59.52 E-value=12 Score=28.17 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Q 031035 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE 119 (167)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~ 119 (167)
.+...+.|++.|++++.++- -.|.++++.|++.- .+++||++--==..|.. -.+.++
T Consensus 35 ~~~l~~~a~~~g~~v~~~QS---N~EgeLId~Ih~a~--~~~dgiiINpgA~THtS-vAlrDA 91 (151)
T 3u80_A 35 RKLCAEWGKDLGLEVEVRQT---DDEAEMVRWMHQAA--DEKTPVVMNPAAFTHYS-YALADA 91 (151)
T ss_dssp HHHHHHHHHHTTEEEEEEEC---SCHHHHHHHHHHHH--HHTCCEEEECTTCCSCC-HHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEec---CCHHHHHHHHHHhh--hcCcEEEECcchhhhhh-HHHHHH
Confidence 56777889999999887763 37899999999974 45899998632233443 245555
No 125
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=59.38 E-value=56 Score=25.39 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-++++|.-..+..+..-.+.-++++++.|+++...... +.++..+.+++|-. .+++|+..
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~---~~~~~~~~~~~l~~--~~dai~~~ 200 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL---KSADVQSATQAIAE--KSDVIYAL 200 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS---SGGGHHHHHHHHGG--GCSEEEEC
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC---ChHHHHHHHHHHhc--cCCEEEEC
Confidence 36787764333334555567778899999998766543 23667778888763 57898883
No 126
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=59.29 E-value=29 Score=28.07 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=43.7
Q ss_pred CceEEEEEEC----------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 39 VPGLAVVIVG----------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 39 ~P~Laii~vg----------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
..++|+|.-+ +..++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhh
Confidence 4467877543 445788899999999999999988774 78999999999998654
No 127
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=59.17 E-value=38 Score=25.89 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=37.9
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++++.-. .+|--...++...+.|++.|........ ..+.+.-.+.++.+- ...|+||++.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~-~~~vdgiIi~ 64 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS--QNDSSKELSNVEDLI-QQKVDVLLIN 64 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHH-HTTCSEEEEC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC--CCCHHHHHHHHHHHH-HcCCCEEEEe
Confidence 34444322 2343445566778899999998876643 224444455666665 3479999985
No 128
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=59.17 E-value=40 Score=23.07 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
.++.-+..++. +-+| |+++.-| +|.--++--++-|++-|+.+.+.+ .++.+|+-..++++
T Consensus 39 dirdiiksmkd--ngkp-lvvfvng---asqndvnefqneakkegvsydvlk---stdpeeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKD--NGKP-LVVFVNG---ASQNDVNEFQNEAKKEGVSYDVLK---STDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTT--CCSC-EEEEECS---CCHHHHHHHHHHHHHHTCEEEEEE---CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHh--cCCe-EEEEecC---cccccHHHHHHHHHhcCcchhhhc---cCCHHHHHHHHHHH
Confidence 44454555643 3356 5544444 688888888999999999988875 45678887777654
No 129
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=59.09 E-value=34 Score=26.91 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=40.4
Q ss_pred CCceEEEEEECC--C-cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGG--R-KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~--d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+.++++|..++ | +=...-.+...+.+++.|+.+....-. .+.++..+.++.+-+ ..++||++.
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~l~~-~~vdgIi~~ 70 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGV--NSEQKAHRRIKELVD-GGVNLIFGH 70 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCC--CSHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCC--CCHHHHHHHHHHHHH-CCCCEEEEc
Confidence 345677776532 3 555566778899999999987665421 233444566777654 469999985
No 130
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=58.73 E-value=29 Score=26.40 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=44.6
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++++|.-+ .++--....+...+.|++.|..+....... +.+.-.+.++.+.. ..|+||++.-.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~~~ 80 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN--NPDNERRGLENLLS-QHIDGLIVEPT 80 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHHHHHH-TCCSEEEECCS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC--ChHHHHHHHHHHHH-CCCCEEEEecc
Confidence 466666544 244556667788999999999988876543 44555667777663 57999999643
No 131
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=58.68 E-value=48 Score=25.67 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.+...+.|++.|+++.... +.+.+.++..+.++.+-. ..|+||++.-.-+
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~ 68 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFV-PQKEDINAQLQMLESFIA-EGVNGIAIAPSDP 68 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEEC-CSSSCHHHHHHHHHHHHH-TTCSEEEECCSST
T ss_pred HHHHHHHHHHHcCCEEEEEC-CCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCh
Confidence 34567788999998877654 223455566667777654 4699999864333
No 132
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=58.60 E-value=25 Score=27.02 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=38.1
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCc-eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGI-KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi-~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++|.-. +++-.....+...+.|++.|. ++..... ..+.+...+.++.+.. ..|+||++.
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~-~~vdgiii~ 66 (309)
T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS--QNDQSKQNDQIDVLLA-KGVKALAIN 66 (309)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC--TTCHHHHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC--CCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 45555432 344445566778889999996 7766543 2344555566666653 469999985
No 133
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=57.42 E-value=49 Score=26.74 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=44.2
Q ss_pred CceEEEEEE----------CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 39 VPGLAVVIV----------GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 39 ~P~Laii~v----------g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
..++|+|.- .+..++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 43 ~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 43 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKE 106 (277)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhh
Confidence 456777773 3456788889999999999999988764 78999999999999875
No 134
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=57.08 E-value=60 Score=24.50 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=39.3
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+++++.-. ++|--...++...+.|++.|..+..... +.+.+.-.+.++.+-. ..|+||++.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgiIi~ 64 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTV-RGTKILLIN 64 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHTT-TTEEEEEEC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC--CCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 45555432 2444445566778899999988776543 2344455566777754 469999995
No 135
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=56.98 E-value=21 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=44.2
Q ss_pred CceEEEEEECC----------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVGG----------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg~----------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
+.++|+|.-.. +.++..-++...+..+++|++++.+. +.|.+++.+.|+++.+.+
T Consensus 15 ~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~d 79 (146)
T 2dko_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKED 79 (146)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSC
T ss_pred CceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhh
Confidence 45677776442 46799999999999999999988875 678899999999987653
No 136
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=56.71 E-value=28 Score=26.78 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=42.3
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++++|..+ +++--....+...+.|++.|..+..+. ..+.+.++..+.++.+.+. .|+||++.-.
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~ 70 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG-AAQYDIQEQITVLEQAIAK-NPAGIAISAI 70 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE-CSSSCHHHHHHHHHHHHHH-CCSEEEECCS
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC-CCcCCHHHHHHHHHHHHHh-CCCEEEEcCC
Confidence 45554433 345555667788899999999988743 3344556666677766543 6999999633
No 137
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=56.39 E-value=23 Score=27.32 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH--HcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 55 SYVSMKRKACA--EVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 55 ~Y~~~k~k~~~--~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
-+.+...+.|+ ++|++++.++ +-.|.++++.|.+.- +..++||++-
T Consensus 38 di~~~l~~~a~~~~~g~~l~~~Q---SN~EGeLId~Ih~a~-~~~~dgIIIN 85 (176)
T 2c4w_A 38 QIHEIMQTFVKQGNLDVELEFFQ---TNFEGEIIDKIQESV-GSEYEGIIIN 85 (176)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE---CSCHHHHHHHHHHHH-SSSCCEEEEE
T ss_pred HHHHHHHHHhccccCCCEEEEEe---eCcHHHHHHHHHHhc-cCCeeEEEEC
Confidence 34566777888 9999887775 347899999999974 3348999986
No 138
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=55.88 E-value=23 Score=29.49 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=39.0
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec------------------CCCCCCHHHHHHHHHHhcCCCCCcE
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID------------------LPEQVSEAELISKVHELNVMPDVHG 100 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~------------------l~~~~~~~el~~~I~~lN~D~~V~G 100 (167)
..+|+|+--|.. .....++|+++|+++..+. ++...+++.+++.+.++..+..|+|
T Consensus 5 ~k~l~Il~~~~~------~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~ 78 (425)
T 3vot_A 5 NKNLAIICQNKH------LPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDG 78 (425)
T ss_dssp CCEEEEECCCTT------CCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSE
T ss_pred CcEEEEECCChh------HHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCE
Confidence 456777644421 2245788999998876542 1222356778888888888888999
Q ss_pred EE
Q 031035 101 IL 102 (167)
Q Consensus 101 Il 102 (167)
|+
T Consensus 79 V~ 80 (425)
T 3vot_A 79 VM 80 (425)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 139
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=55.50 E-value=17 Score=27.82 Aligned_cols=60 Identities=12% Similarity=-0.062 Sum_probs=39.4
Q ss_pred CCCceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 37 GKVPGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 37 g~~P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+...++++|.-. .++--..+.+...+.|++.|..+.......+...+ . ++ .|+||++.-+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--~----~~----~vdgiI~~~~ 66 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFI--P----EK----MVDGAIILDW 66 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCC--C----TT----TCSEEEEECT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHH--h----hc----cccEEEEecC
Confidence 556678877643 35555667788899999999988876543322111 0 11 7999999743
No 140
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=55.45 E-value=26 Score=26.69 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCceEEEEEECCC------cchHHHHHHHHHHHHH---cCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 38 KVPGLAVVIVGGR------KDSQSYVSMKRKACAE---VGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 38 ~~P~Laii~vg~d------~as~~Y~~~k~k~~~~---~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.+|+.+||.+|+. .+++.|. .....++ .|++...+. +|+ +.+++.+.|+++-++...|-|++-==+
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~--L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGGt 88 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGIN--LKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGGT 88 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHH--HHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCccCCCcccchHHHH--HHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCCC
Confidence 5799999999965 3555553 4555565 898876554 344 568888999887654457778776433
No 141
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=55.31 E-value=27 Score=26.80 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=41.1
Q ss_pred CCCceEEEEEECCC---cchHHHHHHHHHHHHHcCceeeeecCCCCC-CHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVGGR---KDSQSYVSMKRKACAEVGIKSFDIDLPEQV-SEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg~d---~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+....+++|.-..+ +-....++...+.|++.|..+.......+. .+.++.+.+. ...|+|||+.-
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~----~~~vdgiIi~~ 74 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILE----TGSADGVIISK 74 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHH----HTCCSEEEEES
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHH----cCCccEEEEec
Confidence 45567777765432 556666778889999999988876543322 2233333332 34799999963
No 142
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=54.70 E-value=5.5 Score=27.81 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC--CCCCcEEEEeCCCCCCCC
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV--MPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~--D~~V~GIlvq~PLP~~id 112 (167)
..=.+...|.|++.|..+..-.|.-+.|+.++.+...+|.+ |++-|-|.+ +||+.+..
T Consensus 21 ~kR~~kv~k~~~~yg~rvQ~SVFe~~lt~~~~~~L~~~l~~~id~~~Dsv~i-y~l~~~~~ 80 (100)
T 4es1_A 21 TKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRI-YRLGNNYK 80 (100)
T ss_dssp HHHHHHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHHHSCTTTCEEEE-EEECCCSS
T ss_pred HHHHHHHHHHHHHhChhheeeEEEEEcCHHHHHHHHHHHHhhcCCCCCEEEE-EEcCCCcc
Confidence 45566788999999988877777777888777765555543 455666555 47776543
No 143
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=54.40 E-value=56 Score=23.27 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=53.2
Q ss_pred CceEEEEEECCCcc--------hHHHHHHHHHHHHHcCceeeeecC--CCCCC---HHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 39 VPGLAVVIVGGRKD--------SQSYVSMKRKACAEVGIKSFDIDL--PEQVS---EAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 39 ~P~Laii~vg~d~a--------s~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~---~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+|.+++|..|-|.. -....+...+.+++.|..+..+.. |.... .+++-+.++++.+..+|.=|
T Consensus 62 ~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~i---- 137 (190)
T 1ivn_A 62 QPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLL---- 137 (190)
T ss_dssp CCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEE----
T ss_pred CCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEE----
Confidence 58999999997754 223344566667777887776653 54433 25566677777666554422
Q ss_pred CCCCCCCHHHHHhcCCCC-CCcccCCcccHHHhhc
Q 031035 106 PLPKHINEEKVLGEISLE-KDVDGFHPLNIGKLAM 139 (167)
Q Consensus 106 PLP~~id~~~i~~~I~P~-KDVDGl~~~NlG~l~~ 139 (167)
++. .... . ..|. --.||+||...|.-..
T Consensus 138 D~~----~~~~-~-~~~~~~~~Dg~Hpn~~G~~~~ 166 (190)
T 1ivn_A 138 PFF----MEEV-Y-LKPQWMQDDGIHPNRDAQPFI 166 (190)
T ss_dssp CCT----HHHH-H-TCGGGBCTTSSSBCGGGHHHH
T ss_pred ccH----Hhhc-c-CCchhhcCCCCCCCHHHHHHH
Confidence 221 1111 1 1221 2359999988887544
No 144
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=54.00 E-value=34 Score=24.29 Aligned_cols=83 Identities=14% Similarity=0.015 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHc-C--ceeeeecCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCc
Q 031035 56 YVSMKRKACAEV-G--IKSFDIDLPEQVSEAELISKVHELNVM-PDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHP 131 (167)
Q Consensus 56 Y~~~k~k~~~~~-G--i~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~ 131 (167)
+++...+.++.+ | -.++.+.++.+.+.+++.+.+++.=+. ++=+|++|+-=|+.+--.+.....+....++.-++-
T Consensus 12 ~A~gl~~~~~~i~G~~~~v~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~~~~v~vi~G 91 (135)
T 1pdo_A 12 AAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAG 91 (135)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTCTTEEEEES
T ss_pred HHHHHHHHHHHHcCCcCCEEEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhccCCEEEEeC
Confidence 556666666665 5 367778888888877777766654433 334799999888766534444444444446777777
Q ss_pred ccHHHhh
Q 031035 132 LNIGKLA 138 (167)
Q Consensus 132 ~NlG~l~ 138 (167)
.|+.-+.
T Consensus 92 vNlpmll 98 (135)
T 1pdo_A 92 VNIPMLV 98 (135)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 7887553
No 145
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=53.73 E-value=72 Score=24.37 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=42.3
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
|.+ ++++|.-..+..+..-.+.-.+.+++.|+.+....+..+.+.++-.+.++++ ...+.++||+..
T Consensus 125 G~~-~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 192 (289)
T 3k9c_A 125 GHR-NIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF 192 (289)
T ss_dssp TCC-SEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred CCC-cEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 443 5665544344444444556678899999986544445566666666666655 446789999984
No 146
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=53.41 E-value=27 Score=26.66 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHHHHHHH--HHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 56 YVSMKRKAC--AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 56 Y~~~k~k~~--~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
..+...+.| ++.|++++.++ +-.|.++++.|.+.-. .+++||++-
T Consensus 44 i~~~l~~~a~~~~~g~~v~~~Q---SN~EGeLId~Ih~A~~-~~~dgIIIN 90 (167)
T 3kip_A 44 IEQAAIEQAKLKNNDSEVLVFQ---SNTEGFIIDRIHEAKR-QGVGFVVIN 90 (167)
T ss_dssp HHHHHHHHHHHTCSSCEEEEEE---CSCHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred HHHHHHHHhccccCCcEEEEEe---cCCHHHHHHHHHHhhh-cCccEEEEc
Confidence 345666777 78999988776 3378999999999741 359999996
No 147
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=53.35 E-value=38 Score=29.44 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=46.7
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCC-cEEEEe
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDV-HGILVQ 104 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V-~GIlvq 104 (167)
.+.|..|. .++.-+.+-....++++|+.++....+..-+.+.+.+..++..++- . +-||.-
T Consensus 267 ~V~Ii~gs-~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g-~~~viIa~ 328 (425)
T 2h31_A 267 RVVVLMGS-TSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDG-IPTVFVAV 328 (425)
T ss_dssp EEEEEESC-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTC-CCEEEEEE
T ss_pred eEEEEecC-cccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCC-CCeEEEEE
Confidence 45566664 3555666778899999999999999999999999999999877653 3 345554
No 148
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=53.26 E-value=22 Score=26.36 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCceEEEEEECCC------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 38 KVPGLAVVIVGGR------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 38 ~~P~Laii~vg~d------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.+|+.+||.+||. .+++.|. .....++.|+++..+..-.| + +++.+.|+++-+ ...|=|+.-=
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~--l~~~l~~~G~~v~~~~iv~D-d-~~i~~al~~a~~-~~~DlVittG 74 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPI--ITEWLAQQGFSSAQPEVVAD-G-SPVGEALRKAID-DDVDVILTSG 74 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHH--HHHHHHHTTCEECCCEEECS-S-HHHHHHHHHHHH-TTCSEEEEES
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHH--HHHHHHHCCCEEEEEEEeCC-H-HHHHHHHHHHHh-CCCCEEEECC
Confidence 4689999999964 3566664 77888999998876654333 3 778888887653 2467777754
No 149
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=53.17 E-value=71 Score=24.67 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 12 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 12 ldGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+||.+-+....+........+ + -.|-++.|.+.+....+.+...+.+++.|+.++...... ...+.+++..++
T Consensus 177 ~d~s~~s~~al~~a~~la~~~----~--~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~ 249 (294)
T 3loq_A 177 YDFSKWADRALEYAKFVVKKT----G--GELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREE 249 (294)
T ss_dssp CCSSHHHHHHHHHHHHHHHHH----T--CEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHhhhc----C--CEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHh
Confidence 678777766665554432222 2 368888888777677788888888888999877655443 345666666666
Q ss_pred hcCC
Q 031035 92 LNVM 95 (167)
Q Consensus 92 lN~D 95 (167)
.+.|
T Consensus 250 ~~~d 253 (294)
T 3loq_A 250 INAT 253 (294)
T ss_dssp TTCS
T ss_pred cCcC
Confidence 5444
No 150
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=52.22 E-value=32 Score=24.63 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=51.6
Q ss_pred CCceEEEEEECCCcc--------hHHHH---HHHHHHHHHcCceeeeecCCCCC------------CHHHHHHHHHHhcC
Q 031035 38 KVPGLAVVIVGGRKD--------SQSYV---SMKRKACAEVGIKSFDIDLPEQV------------SEAELISKVHELNV 94 (167)
Q Consensus 38 ~~P~Laii~vg~d~a--------s~~Y~---~~k~k~~~~~Gi~~~~~~l~~~~------------~~~el~~~I~~lN~ 94 (167)
..|.+++|..|-|.. ...|. +...+.+++-|..+.....+... ..+++-+.++++-+
T Consensus 73 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~ 152 (204)
T 3p94_A 73 LKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYAD 152 (204)
T ss_dssp GCEEEEEEECCHHHHTTTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCccccccCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 469999999997642 23333 34455566668877777654321 12555666766655
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHhc----CCCCCCcccCCcccHHHhhc
Q 031035 95 MPDVHGILVQLPLPKHINEEKVLGE----ISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 95 D~~V~GIlvq~PLP~~id~~~i~~~----I~P~KDVDGl~~~NlG~l~~ 139 (167)
..+|.= +|....+.. ..+.--.||+||.-.|.-..
T Consensus 153 ~~~v~~----------iD~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~ 191 (204)
T 3p94_A 153 KNGLTY----------VDYHSAMKDERNGLPANLSKDGVHPTLEGYKIM 191 (204)
T ss_dssp HTTCEE----------ECHHHHHCCTTSSCCTTTBSSSSSBCHHHHHHH
T ss_pred HcCCcE----------EchhhhhhcccccccccccCCCCCcCHHHHHHH
Confidence 543321 232222211 12223469999988877544
No 151
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.44 E-value=11 Score=28.84 Aligned_cols=66 Identities=8% Similarity=-0.039 Sum_probs=42.9
Q ss_pred CCCceEEEEEEC--CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 37 GKVPGLAVVIVG--GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 37 g~~P~Laii~vg--~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+....+++|.-. .++--..+.+...+.|++.|..+..+....+. ++..+.++.+. ...|+||++.-
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l~-~~~vdgiIi~~ 76 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKT--DCLHLEKGISK-ENSFDAAIIAN 76 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECT--TCGGGCGGGST-TTCCSEEEESS
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCc--hhHHHHHHHHh-ccCCCEEEEec
Confidence 455678877762 45666777888999999999988776543222 12234455554 34799999963
No 152
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=50.90 E-value=77 Score=23.84 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=40.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
++++|....+. +..-.+.-.+.+++.|+.........+.+.++..+.++++ ...+.++||+..
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 183 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS 183 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 45555433333 4444556678899999988754466666666655555544 446789999985
No 153
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=50.77 E-value=34 Score=26.11 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCceEEEEEECCC-----cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC---C
Q 031035 37 GKVPGLAVVIVGGR-----KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL---P 108 (167)
Q Consensus 37 g~~P~Laii~vg~d-----~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL---P 108 (167)
..+|+.+||.+||. .+++.|. ....+++.|+++..+..-.| +.+++.+.|+++-+ ...|=|+.-==. +
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~--L~~~L~~~G~~v~~~~iv~D-d~~~I~~al~~a~~-~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPL--VTELLTEAGFVVDGVVAVEA-DEVDIRNALNTAVI-GGVDLVVSVGGTGVTP 103 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHH--HHHHHHHTTEEEEEEEEECS-CHHHHHHHHHHHHH-TTCSEEEEESCCSSST
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHH--HHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEECCCCCCCC
Confidence 46899999999864 4666664 78889999998876654332 56888888888641 346777775432 3
Q ss_pred CCCCHHHHHhcCCCCCCcccC
Q 031035 109 KHINEEKVLGEISLEKDVDGF 129 (167)
Q Consensus 109 ~~id~~~i~~~I~P~KDVDGl 129 (167)
..+-.+.+.+.. +|.+.|+
T Consensus 104 ~D~t~eal~~l~--~~~l~G~ 122 (185)
T 3rfq_A 104 RDVTPESTREIL--DREILGI 122 (185)
T ss_dssp TCCHHHHHHTTC--SEECHHH
T ss_pred cccHHHHHHHHh--cccCccH
Confidence 334333333332 4555664
No 154
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=50.53 E-value=8.6 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhcCCCCCcEEEE
Q 031035 81 SEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 81 ~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+++++++.|+.|.++..++|+|-
T Consensus 34 ~t~~~i~RI~~Le~~g~ltGViD 56 (72)
T 1wi9_A 34 RTQDAINRIQDLLTEGTLTGVID 56 (72)
T ss_dssp CHHHHHHHHHHHHHHSSSCEEEC
T ss_pred ChHHHHHHHHHHHHCCCeEEEEe
Confidence 56889999999999999999984
No 155
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.37 E-value=26 Score=25.81 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=44.0
Q ss_pred ceEEEEEECCC------cchHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 40 PGLAVVIVGGR------KDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 40 P~Laii~vg~d------~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
|+.+||.+|+. .+++.|. .....++.|+++..+. +|+ +.+++.+.|+++-++...|=|++-==
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~--l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLA--IREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHH--HHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEEcCcccCCCcccchHHH--HHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 67788888864 3566654 6777889999876554 344 56888889988765445677777643
No 156
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=49.11 E-value=72 Score=22.97 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=52.0
Q ss_pred CCCceEEEEEECCCcch--------HHHHHHHHHHHHHcC--ceeeeecCCCCCCH---------------HHHHHHHHH
Q 031035 37 GKVPGLAVVIVGGRKDS--------QSYVSMKRKACAEVG--IKSFDIDLPEQVSE---------------AELISKVHE 91 (167)
Q Consensus 37 g~~P~Laii~vg~d~as--------~~Y~~~k~k~~~~~G--i~~~~~~l~~~~~~---------------~el~~~I~~ 91 (167)
...|.+++|.+|-|... ....+...+.+++.| ..+.....++.... .++-+.+++
T Consensus 83 ~~~pd~vvi~~G~ND~~~~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~ 162 (214)
T 2hsj_A 83 GGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQE 162 (214)
T ss_dssp CSCCCEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEEecCcCCcCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 45799999999976532 334455566666666 66665555443221 256667777
Q ss_pred hcCCC-CCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 92 LNVMP-DVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 92 lN~D~-~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
+-+.. ++.=|=+.-++.... ....+.=-.||+||...|.-..
T Consensus 163 ~a~~~~~~~~iD~~~~~~~~~------~~~~~~~~~Dg~Hp~~~G~~~~ 205 (214)
T 2hsj_A 163 LASAYMQVEFVPVFDCLTDQA------GQLKKEYTTDGLHLSIAGYQAL 205 (214)
T ss_dssp HHTTCTTEEEECCGGGSBCTT------SSBCGGGBSSSSSBCHHHHHHH
T ss_pred HHHHcCCCEEEEhHHHHhCcC------CchhhhccCCCCCCCHHHHHHH
Confidence 76664 443221111111110 0011111248999988876543
No 157
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=48.89 E-value=39 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHcCceee
Q 031035 54 QSYVSMKRKACAEVGIKSF 72 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~ 72 (167)
..|-..|...+.+.||.+.
T Consensus 90 ~~Y~~iK~~~~~~~gv~tq 108 (138)
T 3luc_A 90 PVYAEVKRVGDTVLGMATQ 108 (138)
T ss_dssp HHHHHHHHHHHTTSCCCEE
T ss_pred hHHHHHHHHhccCCCcceE
Confidence 3444444333334444433
No 158
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=48.36 E-value=88 Score=25.68 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=44.8
Q ss_pred CceEEEEEECC--------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVGG--------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg~--------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
..++|+|.-+. ..++..=++...+..+++|++++.+ .+.+.+++.+.|+++.+.+
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~---~dlt~~em~~~l~~f~~~~ 122 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPY---GNVNQDQFFKLLTMVTSSS 122 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEE---CSCCHHHHHHHHHHHHTSH
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEc---cCCCHHHHHHHHHHHHHHh
Confidence 56788887644 4568889999999999999998776 4779999999999987543
No 159
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=48.31 E-value=68 Score=22.49 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=53.7
Q ss_pred CceEEEEEECCCcc--------hHHHHHHHHHHHHHcCceeeeecC--CCCCCH---HHHHHHHHHhcCCCCCcEEEEeC
Q 031035 39 VPGLAVVIVGGRKD--------SQSYVSMKRKACAEVGIKSFDIDL--PEQVSE---AELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 39 ~P~Laii~vg~d~a--------s~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~---~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.|.+++|..|.|.. -....+...+.+++.|..+..+.+ |..... +++-+.++++-+..++.-+
T Consensus 66 ~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~v---- 141 (185)
T 3hp4_A 66 EPTHVLIELGANDGLRGFPVKKMQTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLM---- 141 (185)
T ss_dssp CCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEE----
T ss_pred CCCEEEEEeecccCCCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEE----
Confidence 68999999997643 133455667777777888877753 654443 3556666776666544422
Q ss_pred CCCCCCCHHHHHhcCCCCC---CcccCCcccHHHhhc
Q 031035 106 PLPKHINEEKVLGEISLEK---DVDGFHPLNIGKLAM 139 (167)
Q Consensus 106 PLP~~id~~~i~~~I~P~K---DVDGl~~~NlG~l~~ 139 (167)
++.... +.... --||+||...|.-..
T Consensus 142 d~~~~~--------~~~~~~~~~~Dg~Hpn~~G~~~~ 170 (185)
T 3hp4_A 142 NFFMLD--------IAGKSDLMQNDSLHPNKKAQPLI 170 (185)
T ss_dssp CCTTTT--------TTTCGGGBCTTSSSBCTTHHHHH
T ss_pred cchhhh--------cCCCcccccCCCCCcCHHHHHHH
Confidence 332111 11111 249999988887554
No 160
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=47.97 E-value=99 Score=24.28 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=43.9
Q ss_pred CceEEEEEEC----------CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVG----------GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg----------~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
..++|+|.-+ ..+++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.+
T Consensus 15 ~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~ 79 (250)
T 2j32_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKED 79 (250)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSC
T ss_pred CccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhh
Confidence 4567766544 345677889999999999999988774 779999999999998764
No 161
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=47.07 E-value=1.1e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=43.6
Q ss_pred CCceEEEEEECC----------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 38 KVPGLAVVIVGG----------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 38 ~~P~Laii~vg~----------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
...++|+|.-+. .+++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 19 ~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKG---DLTAKKMVLALLELARQ 83 (277)
T ss_dssp SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEE---SCCHHHHHHHHHHHHHS
T ss_pred CcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEc---CCCHHHHHHHHHHHHHh
Confidence 355688776544 34677889999999999999988764 77889999999988654
No 162
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=46.04 E-value=45 Score=25.06 Aligned_cols=55 Identities=5% Similarity=-0.190 Sum_probs=30.7
Q ss_pred CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 49 GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 49 ~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.+|-...+.+...+.|++.|.++.......+. +...+.++.+.. ..|+||++.-+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~-~~vdgiI~~~~ 64 (276)
T 2h0a_A 10 ATEFYRRLVEGIEGVLLEQRYDLALFPILSLA--RLKRYLENTTLA-YLTDGLILASY 64 (276)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCEEEECCCCSCC--CCC----------CCCSEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCch--hhHHHHHHHHHh-CCCCEEEEecC
Confidence 34555566778889999999988765443222 222334455543 46999998744
No 163
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=46.03 E-value=71 Score=24.64 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.0
Q ss_pred CceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 39 VPGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 39 ~P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
.|++++|-.+- ..+...|.++-.+..+++|+++..++..
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~ 70 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV 70 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 58999997663 3346789999999999999988777654
No 164
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor}
Probab=45.87 E-value=51 Score=26.80 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCCCceEEEEEE------CCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIV------GGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~v------g~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.+++.+..++.+ |.++-|+|=-. .+......++++..+..++.|++-..+.+....+.+.+.+.+++|.+.
T Consensus 63 ~~~~~i~~~~~~-g~kvllsiGG~~~s~~~~~~~~r~~f~~~~~~~~~~~~~DGiDiD~E~p~~~~~~~~~l~~l~~~ 139 (302)
T 3ebv_A 63 QFKADVRAKQAA-GKKVIISVGGEKGTVSVNSSASATNFANSVYSVMREYGFDGVDIDLENGLNPTYMTQALRALSAK 139 (302)
T ss_dssp HHHHHHHHHHHT-TCEEEEEEEETTCCCCCCSHHHHHHHHHHHHHHHHHHTCCEEEEEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCEEEEEEECCCCCcccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccccCHHHHHHHHHHHHHh
Confidence 455566666544 66654443110 111234678999999999999888777665555667788888887654
No 165
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=45.39 E-value=1.1e+02 Score=24.47 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=43.3
Q ss_pred ceEEEEEECC---------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 40 PGLAVVIVGG---------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 40 P~Laii~vg~---------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.++|+|.-+. .+++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP---NLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec---CcCHHHHHHHHHHHHHh
Confidence 4577775443 45678899999999999999988774 78999999999999765
No 166
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=44.88 E-value=40 Score=23.51 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhc
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELN 93 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN 93 (167)
-.|-+...+..++.|++++.+.+.++ .+.+++.+.+.+++
T Consensus 13 C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g 53 (120)
T 3fz4_A 13 CSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENSG 53 (120)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHcC
Confidence 44666667777777777777766443 56667776666653
No 167
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.83 E-value=1e+02 Score=23.48 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=39.2
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHHHHHHH-hcCCCCCcEEEEe
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELISKVHE-LNVMPDVHGILVQ 104 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~~~I~~-lN~D~~V~GIlvq 104 (167)
.-++++|....++.+..-.+.-.+.+++.|+.++.... ..+.+.++..+.+++ |...+.+++|+..
T Consensus 127 ~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 194 (305)
T 3g1w_A 127 EGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT 194 (305)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEEC
Confidence 34677776333334444445567788888887765432 334455555555544 3445789999985
No 168
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=44.44 E-value=54 Score=25.06 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=44.0
Q ss_pred CceEEEEEECCCc------chHHHHHHHHHHHHHcCce---eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 39 VPGLAVVIVGGRK------DSQSYVSMKRKACAEVGIK---SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 39 ~P~Laii~vg~d~------as~~Y~~~k~k~~~~~Gi~---~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+|+.+||.+||.- +++.|. .....++.|++ .....+|+ +.+++.+.|+++-++...|=|+.-==
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~--L~~~L~~~G~~~~v~~~~iV~D--d~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPA--LEEWLTSALTTPFELETRLIPD--EQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHH--HHHHHHHHBCSCEEEEEEEEES--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCEEEEEEECCCCCCCeEEchHHHH--HHHHHHHcCCCCceEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5788999998753 445553 66778888886 34444555 46888889988766556788887643
No 169
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=44.19 E-value=94 Score=23.67 Aligned_cols=66 Identities=8% Similarity=-0.073 Sum_probs=34.2
Q ss_pred EEEEEECCCcc--hHHHHHHHHHHHHHc-CceeeeecCCCCC------------------CH--HHHHHHHHHhcCCCCC
Q 031035 42 LAVVIVGGRKD--SQSYVSMKRKACAEV-GIKSFDIDLPEQV------------------SE--AELISKVHELNVMPDV 98 (167)
Q Consensus 42 Laii~vg~d~a--s~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~------------------~~--~el~~~I~~lN~D~~V 98 (167)
+.+|....++. +..-++...+.+++. |.+++.+.+.+.. .. +++.+.++++.+ -
T Consensus 4 IliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~---A 80 (242)
T 1sqs_A 4 IFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE---S 80 (242)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH---C
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHH---C
Confidence 44444444432 333444445555555 7777777664320 00 233333334333 3
Q ss_pred cEEEEeCCCCCC
Q 031035 99 HGILVQLPLPKH 110 (167)
Q Consensus 99 ~GIlvq~PLP~~ 110 (167)
|+|++..|+-.+
T Consensus 81 D~iI~~sP~y~~ 92 (242)
T 1sqs_A 81 DIIIISSPVYLQ 92 (242)
T ss_dssp SEEEEEEEECSS
T ss_pred CEEEEEcccccc
Confidence 699999999754
No 170
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=43.95 E-value=61 Score=23.89 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=40.1
Q ss_pred eEEEEEECCCc--ch--HHHHHHHHHHHHHcC--ceeeeecCC--CC----CC--------------------------H
Q 031035 41 GLAVVIVGGRK--DS--QSYVSMKRKACAEVG--IKSFDIDLP--EQ----VS--------------------------E 82 (167)
Q Consensus 41 ~Laii~vg~d~--as--~~Y~~~k~k~~~~~G--i~~~~~~l~--~~----~~--------------------------~ 82 (167)
++.+|....++ .| ..-++...+.+++.| .+++.+.+. +. .+ .
T Consensus 3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (208)
T 2hpv_A 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKV 82 (208)
T ss_dssp EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHH
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhH
Confidence 45555555554 33 334566677777777 888888776 32 11 1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 83 AELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
+++.+.++++.+- |+|++..|+-..
T Consensus 83 ~~~~~~~~~l~~a---D~iv~~~P~y~~ 107 (208)
T 2hpv_A 83 ARFNELTDQFLSA---DKVVIANPMWNL 107 (208)
T ss_dssp HHHHHHHHHHHHC---SEEEEEEECBTT
T ss_pred HHHHHHHHHHHhC---CEEEEEeccccC
Confidence 2344455555433 699999999643
No 171
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=42.87 E-value=37 Score=25.42 Aligned_cols=49 Identities=18% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
++.+.....+.+-.-+++.+.|.+..+ +.+.++++.+- |+|+++.|+--
T Consensus 15 S~~~~~l~~~~~~~~~v~v~dL~~~~D---~~~~~~~l~~a---D~iV~~~P~y~ 63 (177)
T 3ha2_A 15 SNTQPFFKAAIENFSNVTWHPLVADFN---VEQEQSLLLQN---DRIILEFPLYW 63 (177)
T ss_dssp CSSHHHHHHHHTTCTTEEEEECCTTCC---HHHHHHHHHTC---SEEEEEEECBT
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCccc---HHHHHHHHHhC---CEEEEECChhh
Confidence 344444444433346788999987554 44444444433 79999999853
No 172
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=42.87 E-value=49 Score=24.45 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=38.9
Q ss_pred chHHHHHHHHHH-HHHcCceeeeecCCCCC---------CHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 52 DSQSYVSMKRKA-CAEVGIKSFDIDLPEQV---------SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 52 as~~Y~~~k~k~-~~~~Gi~~~~~~l~~~~---------~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
.+...++...+. +++.|.+++.+.+.+.. ..+++.+.++++.+- |+|++-.|.-.+-=...+.+.|
T Consensus 17 ~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~a---D~ii~~sP~y~~~~p~~lK~~l 92 (197)
T 2vzf_A 17 TTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNA---DGLIVATPIYKASYTGLLKAFL 92 (197)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHC---SEEEEEEECBTTBCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHC---CEEEEEeCccCCCCCHHHHHHH
Confidence 355666666666 66668888888764321 113444455555433 6999999987643333443333
No 173
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=42.85 E-value=49 Score=23.54 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=49.9
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEeCCCCCCCCHH-HHH
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQLPLPKHINEE-KVL 117 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq~PLP~~id~~-~i~ 117 (167)
.++.++-=|.. -+...++.....+.+ =.++.+.+|.+.+.+++.+.+++. .+-+.=+|+|++-=+-.-.+.. .+.
T Consensus 5 igiiivsHG~~-~A~~l~~~a~~i~G~--~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~ 81 (130)
T 3gx1_A 5 VEVIVMMHGRS-TATSMVETVQELLSI--ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILT 81 (130)
T ss_dssp CEEEEEEESSS-HHHHHHHHHHHHHTC--CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHH
T ss_pred eEEEEEcCCHH-HHHHHHHHHHHHcCc--cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444433421 344445555555544 345667778888887777765543 3334458999987772222211 122
Q ss_pred hcCCCCCCcccCCcccHHHhh
Q 031035 118 GEISLEKDVDGFHPLNIGKLA 138 (167)
Q Consensus 118 ~~I~P~KDVDGl~~~NlG~l~ 138 (167)
+.. ..++.-++-.|+--+.
T Consensus 82 ~~~--~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 82 EEL--GIRTKTVTMVSTPVVL 100 (130)
T ss_dssp HHH--CCCEEEECSCCHHHHH
T ss_pred Hhc--CCCEEEEeCCCHHHHH
Confidence 111 2356666666665444
No 174
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=42.50 E-value=73 Score=21.20 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=39.5
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
.-|+.+.+|+.....+ .+..++.|+++... .+.++.++.+. +....|-|++-.-+|.+.+--.+++.|
T Consensus 6 ~~ilivdd~~~~~~~l---~~~L~~~g~~v~~~-----~~~~~a~~~l~---~~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTI---ANILNKYGYTVEIA-----LTGEAAVEKVS---GGWYPDLILMDIELGEGMDGVQTALAI 73 (140)
T ss_dssp CEEEEECSCHHHHHHH---HHHHHHTTCEEEEE-----SSHHHHHHHHH---TTCCCSEEEEESSCSSSCCHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHH---HHHHHHcCCEEEEe-----cChHHHHHHHh---cCCCCCEEEEeccCCCCCCHHHHHHHH
Confidence 3466777766555444 44455667665432 13455555543 334567888888888666655555444
No 175
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=42.34 E-value=48 Score=20.39 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCce
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~ 70 (167)
+++.+.++.+... .|...++.-+|...+...+-.....|++.|+.
T Consensus 30 ~~L~~~l~~~~~~---~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 30 EMVTQLSRQEFDK---DNNTLFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp HHHHHHHHHHHHH---CTTCCEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhh---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4555555555433 23344555666677777777888999999873
No 176
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=41.92 E-value=79 Score=21.41 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCC-cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
+++++++.+.+. ..++++.-|.- ...--|=+..++..++.|+.++.+.+..+ .++.+.+.++..-..|=-|.
T Consensus 4 ~~~~~v~~~i~~----~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d---~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 4 DLNLRLKKLTHA----APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSD---EEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp CHHHHHHHHHTS----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC---HHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHHHhc----CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCC---HHHHHHHHHHHCCCCCCEEE
Confidence 455556655433 24555554432 25667888888999999999999988653 56777787776555554444
Q ss_pred E
Q 031035 103 V 103 (167)
Q Consensus 103 v 103 (167)
|
T Consensus 77 i 77 (111)
T 3zyw_A 77 V 77 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 177
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=41.21 E-value=69 Score=25.61 Aligned_cols=47 Identities=6% Similarity=-0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHc-------CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 57 VSMKRKACAEV-------GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 57 ~~~k~k~~~~~-------Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+....+++++ |..++++......+.+.-.+.+++|-++..|+||+.
T Consensus 28 ~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 81 (385)
T 1pea_A 28 RYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVG 81 (385)
T ss_dssp HHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEEC
Confidence 34445555554 544444433333445555556666655556777765
No 178
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=40.75 E-value=24 Score=30.09 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHHcCcee-eeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 61 RKACAEVGIKS-FDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 61 ~k~~~~~Gi~~-~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.-.+...|... ....+..+.+.+.+.+.++.+-+|++|++|+|..|
T Consensus 264 ~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ 310 (397)
T 3ufx_B 264 LDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIF 310 (397)
T ss_dssp HHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEE
T ss_pred HHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 34555666432 24566777899999999999999999999998544
No 179
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=40.63 E-value=1.2e+02 Score=25.51 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=37.7
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
..+|.-+++... +....+..+.....++.|++++.++++...+.+++.+.+++
T Consensus 25 ~~kp~~vv~I~s--~~~~~~~~~l~~~l~~~~i~~~~~~i~~~~d~~~i~~~~~~ 77 (385)
T 1xmx_A 25 RTVSRHIIFIGD--HTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRE 77 (385)
T ss_dssp TCCCCEEEEEEC--GGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHH
T ss_pred cCCCCEEEEEEC--CcHHHHHHHHHHHHHHcCCCceEEecCCccCHHHHHHHHHH
Confidence 478887777666 34456666777888888999999999776666565444443
No 180
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=40.47 E-value=63 Score=24.35 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=42.9
Q ss_pred ceEEEEEECC-------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 40 PGLAVVIVGG-------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 40 P~Laii~vg~-------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
.++|+|.-+. ..++..-++...+..+++|++++.+. +.+.+++.+.|+++.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHh
Confidence 4788776554 34789999999999999999988764 6789999999999864
No 181
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=40.11 E-value=42 Score=23.58 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCceEEEEEECCCcch-------HHHHHHHHHHHHHc-CceeeeecCC
Q 031035 38 KVPGLAVVIVGGRKDS-------QSYVSMKRKACAEV-GIKSFDIDLP 77 (167)
Q Consensus 38 ~~P~Laii~vg~d~as-------~~Y~~~k~k~~~~~-Gi~~~~~~l~ 77 (167)
..|.+++|.+|-|... ..|.+...+..+++ |..+.....|
T Consensus 66 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~l~~~i~~~~~~~vi~~~~~ 113 (195)
T 1yzf_A 66 EKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPP 113 (195)
T ss_dssp GCCSEEEEECCTTTTCTTSCCCHHHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred cCCCEEEEEeeccccCccCCCCHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4799999999876543 34555555555544 5555455444
No 182
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=40.00 E-value=56 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHH
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHE 91 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~ 91 (167)
-.|-+...+..++.||+++.+.+.+ ..+.+++.+.+.+
T Consensus 10 C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~~ 48 (120)
T 3l78_A 10 CTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILSY 48 (120)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHhh
Confidence 3455555666666666666666543 2455555555554
No 183
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=39.85 E-value=58 Score=22.67 Aligned_cols=41 Identities=15% Similarity=-0.005 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhc
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELN 93 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN 93 (167)
+-.|-+...+..++.|++++.+.+.++ .+.+++.+.+.++.
T Consensus 13 ~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g 54 (120)
T 3gkx_A 13 ACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSG 54 (120)
T ss_dssp TCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcC
Confidence 344666666777777777777666433 45666766666654
No 184
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=39.33 E-value=61 Score=26.57 Aligned_cols=60 Identities=5% Similarity=-0.092 Sum_probs=35.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+....+++|.-.++|-....++...+.|++.|..+....-... .+. ++.+. ...|+|||+
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~---~~~---i~~l~-~~~vDGiIi 82 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF---RAR---IDKIK-DWLGDGVIA 82 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C---C------------CCCSEEEE
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCc---cch---hhhHh-cCCCCEEEE
Confidence 5566777776434444455677888999999998887763221 222 34443 347999998
No 185
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=39.30 E-value=50 Score=24.44 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=31.1
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ 79 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~ 79 (167)
.++.+|.......+..-++...+.+++.|++++.+.+.+.
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 4677777666666777788888888888999999988764
No 186
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=39.24 E-value=64 Score=24.26 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=48.0
Q ss_pred CceEEEEEECCC------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC---CCCC
Q 031035 39 VPGLAVVIVGGR------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL---PLPK 109 (167)
Q Consensus 39 ~P~Laii~vg~d------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~---PLP~ 109 (167)
.|+.+||.+|+. .+++.| ...+.+++.|+++..+..-.+ +.+++.+.|+++-++ .|-|++-- |=+.
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~--~l~~~L~~~G~~v~~~~iv~D-d~~~I~~~l~~a~~~--~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAA--FIGNFLTYHGYQVRRGFVVMD-DLDEIGWAFRVALEV--SDLVVSSGGLGPTFD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHH--HHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHHH--CSEEEEESCCSSSTT
T ss_pred CCEEEEEEEcccccCCcEEeHHHH--HHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhc--CCEEEEcCCCcCCcc
Confidence 377888888863 355666 477888899998876654322 567888888877544 56777654 3333
Q ss_pred CCCHHHHHhcC
Q 031035 110 HINEEKVLGEI 120 (167)
Q Consensus 110 ~id~~~i~~~I 120 (167)
.+-.+.+.+++
T Consensus 78 D~T~ea~a~~~ 88 (172)
T 3kbq_A 78 DMTVEGFAKCI 88 (172)
T ss_dssp CCHHHHHHHHH
T ss_pred cchHHHHHHHc
Confidence 33333344343
No 187
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=39.15 E-value=1.1e+02 Score=26.22 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=44.3
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeee-ecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFD-IDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
..++|... |.-.....+...+.+++.|+.+.. ..++...+..++...+.++....+.+.|++...
T Consensus 188 ~V~ii~~d-~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~ 253 (555)
T 2e4u_A 188 YVSTVASE-GDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMR 253 (555)
T ss_dssp EEEEEEES-STTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEEEEee-ChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcC
Confidence 56666554 555666677788899999997753 345544456778888888865556677777543
No 188
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=39.07 E-value=17 Score=26.08 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=35.6
Q ss_pred eEEEEEECC-----CcchHHHHHHHHHHHHHcCceeeeec-CCC-CCCHHHHHHHHHHhcCC-CCCcEEEEeCC
Q 031035 41 GLAVVIVGG-----RKDSQSYVSMKRKACAEVGIKSFDID-LPE-QVSEAELISKVHELNVM-PDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~-----d~as~~Y~~~k~k~~~~~Gi~~~~~~-l~~-~~~~~el~~~I~~lN~D-~~V~GIlvq~P 106 (167)
.-++|.++. ......+++...+.|...|+.+.... +.. ....+++.+.++.+.+. +++.=+++-+|
T Consensus 13 ~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~~~~qlv~~ilp 86 (138)
T 3luc_A 13 VWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILP 86 (138)
T ss_dssp SEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred eEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456666552 33456788888888888888765311 000 11223333333333221 44667777766
No 189
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=38.85 E-value=91 Score=22.78 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCceEEEEEECCCcc--------hHHH---HHHHHHHHHHcCceeeeecCCCCC---------C-H---HHHHHHHHHhc
Q 031035 38 KVPGLAVVIVGGRKD--------SQSY---VSMKRKACAEVGIKSFDIDLPEQV---------S-E---AELISKVHELN 93 (167)
Q Consensus 38 ~~P~Laii~vg~d~a--------s~~Y---~~~k~k~~~~~Gi~~~~~~l~~~~---------~-~---~el~~~I~~lN 93 (167)
.+|.+++|.+|-|-. ...| .+...+.+++-|+.+.+...++.. . . +++-+.|+++-
T Consensus 77 ~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a 156 (209)
T 4hf7_A 77 LSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYA 156 (209)
T ss_dssp GCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHH
Confidence 479999999986531 1233 344555667778877666543211 1 1 33445566665
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 94 VMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 94 ~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
+..+|.=|=+..++-.. .. ..+++.==.||+||...|.-..
T Consensus 157 ~~~~v~~iD~~~~~~~~--~~---~~~~~~~~~DglHpn~~Gy~~~ 197 (209)
T 4hf7_A 157 KANKIPFVNYYQPMVVG--EN---KALNPQYTKDGVHPTGEGYDIM 197 (209)
T ss_dssp HHTTCCEECSHHHHEET--TT---TEECGGGBSSSSSBCHHHHHHH
T ss_pred HhcCCeEeecHHHHhcc--cc---cccCcccCCCCCCCCHHHHHHH
Confidence 55554422111111000 00 0111111249999988886443
No 190
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=38.77 E-value=57 Score=23.74 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=39.7
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC----------------HHHHHHHHHHhcCCCCCcEEEEe
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS----------------EAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~----------------~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++.+|... ...+...++...+.+++.|++++.+.+.+... .++ .+.+.. -|+|++.
T Consensus 6 kilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~------aD~ii~g 77 (199)
T 2zki_A 6 NILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRW------ADGFAIG 77 (199)
T ss_dssp EEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHH------CSEEEEE
T ss_pred EEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHh------CCEEEEE
Confidence 55666555 55666777777777887888888888765310 001 222322 3699999
Q ss_pred CCCCCC
Q 031035 105 LPLPKH 110 (167)
Q Consensus 105 ~PLP~~ 110 (167)
.|.-.+
T Consensus 78 sP~y~~ 83 (199)
T 2zki_A 78 SPTRYG 83 (199)
T ss_dssp EECBTT
T ss_pred CCcccc
Confidence 998653
No 191
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.62 E-value=1.3e+02 Score=22.92 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=39.7
Q ss_pred ceEEEEEECC--CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH-hcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGG--RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~--d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~-lN~D~~V~GIlvq 104 (167)
-++++|. |+ .+.+..-.+.-.+.+++.|+++..... ..+.+...+.+++ |...+.+++|+..
T Consensus 131 ~~i~~i~-g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (297)
T 3rot_A 131 KRALVLN-PQPGHIGLEKRAYGIKTILQDKGIFFEELDV--GTDPNQVQSRVKSYFKIHPETNIIFCL 195 (297)
T ss_dssp CEEEEEE-SCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC--CSCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred ceEEEEe-CCCCcHHHHHHHHHHHHHHHhcCCeEEEeec--CCChHHHHHHHHHHHHhCCCCCEEEEc
Confidence 3565554 33 223344455667888888999877652 2345566666655 6667889999985
No 192
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=38.60 E-value=1.2e+02 Score=24.82 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred CceEEEEEECC---------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 39 VPGLAVVIVGG---------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 39 ~P~Laii~vg~---------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
...+|+|.-+. .+++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP---NLKSEEINKFIQQTAEM 121 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHSS
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHh
Confidence 35678776543 45688999999999999999988774 77999999999999764
No 193
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=38.56 E-value=50 Score=27.39 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=41.0
Q ss_pred CCceEEEEEECC---CcchHHHHHHHHHHHHHcC--ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGG---RKDSQSYVSMKRKACAEVG--IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~---d~as~~Y~~~k~k~~~~~G--i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+.++++|..|. .+=...-.+...+.+++.| +++..++--. ..++..+.|+.+-++ .+++|+.-
T Consensus 25 ~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~--~~~d~~~~l~~l~~~-g~d~Ii~~ 93 (356)
T 3s99_A 25 EKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA--EGADAERSIKRIARA-GNKLIFTT 93 (356)
T ss_dssp -CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC--TTHHHHHHHHHHHHT-TCSEEEEC
T ss_pred CCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC--CHHHHHHHHHHHHHC-CCCEEEEC
Confidence 356788888763 2323334567888999999 7766554322 224556777777654 58988875
No 194
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=38.30 E-value=82 Score=23.30 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=42.1
Q ss_pred eEEEEEECCCcchHH--HHHHHHHHHHHcCceeeeecCCCC---------CCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 41 GLAVVIVGGRKDSQS--YVSMKRKACAEVGIKSFDIDLPEQ---------VSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 41 ~Laii~vg~d~as~~--Y~~~k~k~~~~~Gi~~~~~~l~~~---------~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
++.+|....++.|.+ -++...+.++ -|.+++.+.+.+- ...+++.+.++++.+- |||++..|...
T Consensus 4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~A---D~iV~~sP~y~ 79 (192)
T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEA---DAIWIFSPVYN 79 (192)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHC---SEEEEECCCBT
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhC---CEEEEECcccc
Confidence 455555555544433 3444444444 4777777776421 1123445555555443 69999999975
Q ss_pred CCCH---HHHHhcCC
Q 031035 110 HINE---EKVLGEIS 121 (167)
Q Consensus 110 ~id~---~~i~~~I~ 121 (167)
+-=. +..++.+.
T Consensus 80 ~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 80 YAIPGPVKNLLDWLS 94 (192)
T ss_dssp TBCCHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhh
Confidence 4322 34444444
No 195
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.12 E-value=71 Score=23.73 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=36.3
Q ss_pred EEEEEECCCcchH--HHHHHHHHHHHHcCceeeeecCCCCC-----------------CHHHHHHHHHHhcCCCCCcEEE
Q 031035 42 LAVVIVGGRKDSQ--SYVSMKRKACAEVGIKSFDIDLPEQV-----------------SEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 42 Laii~vg~d~as~--~Y~~~k~k~~~~~Gi~~~~~~l~~~~-----------------~~~el~~~I~~lN~D~~V~GIl 102 (167)
+.+|....++.|. .-++...+.+ +.|.+++.+.|.+.- ..+++.+.++++.+- |+|+
T Consensus 3 iLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~A---D~iV 78 (196)
T 3lcm_A 3 ILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWA---DHLI 78 (196)
T ss_dssp EEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHC---SEEE
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhC---CEEE
Confidence 4555555555552 2233333333 458888888875431 013444555555433 6999
Q ss_pred EeCCCCCC
Q 031035 103 VQLPLPKH 110 (167)
Q Consensus 103 vq~PLP~~ 110 (167)
++.|+-..
T Consensus 79 ~~~P~y~~ 86 (196)
T 3lcm_A 79 FIFPIWWS 86 (196)
T ss_dssp EEEECBTT
T ss_pred EECchhhc
Confidence 99998643
No 196
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.11 E-value=1.2e+02 Score=23.71 Aligned_cols=66 Identities=9% Similarity=-0.124 Sum_probs=44.9
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCc----eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI----KSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+..++.+|++.-+.|+=..-.+..+...++.|. +++.......-+++.....+++|-.+ ++|-|+.
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~-~~DlIia 75 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVG 75 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTT-CCSEEEE
T ss_pred cCCceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhc-CCcEEEE
Confidence 457788888888888766666677777777774 24444445556677777778887654 5777664
No 197
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=37.72 E-value=1.2e+02 Score=22.49 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=40.8
Q ss_pred HHHHhccCCCceEEEEEECC-----CcchH-HHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHh-cCCCCCcEE
Q 031035 30 RLLSEKYGKVPGLAVVIVGG-----RKDSQ-SYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHEL-NVMPDVHGI 101 (167)
Q Consensus 30 ~~l~~~~g~~P~Laii~vg~-----d~as~-~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~l-N~D~~V~GI 101 (167)
+.|.+. |.+ ++++|.-.. .+.+. .-.+.-.+.+++.|+.+... .+..+.+.++-.+.++++ ...+.+++|
T Consensus 107 ~~L~~~-G~~-~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 184 (276)
T 2h0a_A 107 AYLARF-PGP-IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNV 184 (276)
T ss_dssp HHHTTS-SSC-EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHc-CCC-eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEE
Confidence 334333 543 677665332 23344 45556678889999876431 122334555555555554 445779999
Q ss_pred EEe
Q 031035 102 LVQ 104 (167)
Q Consensus 102 lvq 104 (167)
+..
T Consensus 185 ~~~ 187 (276)
T 2h0a_A 185 FAG 187 (276)
T ss_dssp ECS
T ss_pred EEC
Confidence 863
No 198
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=37.55 E-value=81 Score=28.48 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=45.0
Q ss_pred CCCceEEEEEECCCc-----ch--H---HHHH-HHHHHHHHc----CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEE
Q 031035 37 GKVPGLAVVIVGGRK-----DS--Q---SYVS-MKRKACAEV----GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGI 101 (167)
Q Consensus 37 g~~P~Laii~vg~d~-----as--~---~Y~~-~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 101 (167)
+.+|++.++-+++.- .| . .+++ ......+++ |..++.+.-+.-++..+..+...+.+++.+|+|+
T Consensus 4 ~~~~kiGi~p~~~gr~~~~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~pvevV~~~~~i~~~~~a~~~~e~f~~~~vd~v 83 (591)
T 1fui_A 4 ISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLT 83 (591)
T ss_dssp CSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTEEEE
T ss_pred CCCceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhhcCCCCeEEEECCCccCCHHHHHHHHHHhhccCCCEE
Confidence 457899998887754 11 1 1221 122233433 3556666546666666666667777777899999
Q ss_pred EEeCCCC
Q 031035 102 LVQLPLP 108 (167)
Q Consensus 102 lvq~PLP 108 (167)
|+.+|-.
T Consensus 84 i~~~~tf 90 (591)
T 1fui_A 84 ITVTPCW 90 (591)
T ss_dssp EEEESSC
T ss_pred EEEcCcC
Confidence 9999843
No 199
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=37.44 E-value=85 Score=24.75 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=42.4
Q ss_pred eEEEEEECCCcc--hHHHHHHHHHHHHHcCceeeeecCCCCC----------------------------------CHHH
Q 031035 41 GLAVVIVGGRKD--SQSYVSMKRKACAEVGIKSFDIDLPEQV----------------------------------SEAE 84 (167)
Q Consensus 41 ~Laii~vg~d~a--s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~----------------------------------~~~e 84 (167)
++.+|....++. +..-++...+.+++.|.+++.+.|.+.- -.++
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 83 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD 83 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence 455555555543 3445555666667778888888875431 0146
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 85 LISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 85 l~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
+.+.+++|.+- |+|+++.|+-..
T Consensus 84 ~~~~~~~l~~A---D~IV~~~P~y~~ 106 (273)
T 1d4a_A 84 IVAEQKKLEAA---DLVIFQFPLQWF 106 (273)
T ss_dssp HHHHHHHHHHC---SEEEEEEECBTT
T ss_pred HHHHHHHHHhC---CEEEEECchhhc
Confidence 67776666554 699999999643
No 200
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=36.86 E-value=1.4e+02 Score=25.28 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=45.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCC-CCCcEEEEeC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVM-PDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D-~~V~GIlvq~ 105 (167)
+.++|. .||.-.....+...+.+++.|+.+... .+|.+.+..++...+.++.+. +++.-|++..
T Consensus 199 ~V~li~-~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~ 264 (496)
T 3ks9_A 199 YVSAVH-TEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFC 264 (496)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred EEEEEE-eccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEec
Confidence 566554 466667777888889999999987643 345556677888888888773 6677777654
No 201
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=36.76 E-value=60 Score=22.62 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhcC
Q 031035 53 SQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELNV 94 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~ 94 (167)
+-.|-+...+..++.|++++.+.+.++ .+.+++.+.++++.-
T Consensus 14 ~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 56 (121)
T 3rdw_A 14 RCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGF 56 (121)
T ss_dssp TCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence 345666777777788888777776543 466777777777643
No 202
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=36.75 E-value=1.2e+02 Score=24.64 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=43.8
Q ss_pred ceEEEEEECCC-------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC
Q 031035 40 PGLAVVIVGGR-------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV 94 (167)
Q Consensus 40 P~Laii~vg~d-------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 94 (167)
..+|+|.-+.+ .++..-++...+..+++|++++.+. +.+.+++.+.|+++.+
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHh
Confidence 36888876653 5788899999999999999988775 7799999999999865
No 203
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=36.72 E-value=77 Score=22.91 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=38.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHH---------HH--HHHHHhcCCCCCcEEEEeCCCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAE---------LI--SKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~e---------l~--~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
++.+|.......+...++...+.+++.|++++.+.+.+.....- .. ...+++.+ -|+|++..|.-.
T Consensus 7 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aD~ii~gsP~y~ 83 (200)
T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKN---CAGLALGSPTRF 83 (200)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHT---CSEEEEEEECBT
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHH---CCEEEEEcChhc
Confidence 45555555444566667777777777788888777765311100 00 01233322 369999999865
Q ss_pred C
Q 031035 110 H 110 (167)
Q Consensus 110 ~ 110 (167)
+
T Consensus 84 ~ 84 (200)
T 2a5l_A 84 G 84 (200)
T ss_dssp T
T ss_pred c
Confidence 4
No 204
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=36.67 E-value=33 Score=29.54 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=46.7
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCcee----------------------eeecCCCCCCHHHHHHHHHHhcCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKS----------------------FDIDLPEQVSEAELISKVHELNVMPD 97 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~----------------------~~~~l~~~~~~~el~~~I~~lN~D~~ 97 (167)
..+++|.-|.-++. ...-.|+..|.+. ..+.+..+.+.+.+.+.++.+-+|++
T Consensus 294 ~rvaiitngGG~~~-----laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~ 368 (457)
T 2csu_A 294 NKVAIMTNAGGPGV-----LTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPN 368 (457)
T ss_dssp SEEEEEESCHHHHH-----HHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTT
T ss_pred CcEEEEECCHHHHH-----HHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCC
Confidence 46887776643332 3456788888873 34566677889999999999999999
Q ss_pred CcEEEEeCC
Q 031035 98 VHGILVQLP 106 (167)
Q Consensus 98 V~GIlvq~P 106 (167)
|++|++-.-
T Consensus 369 vd~vlv~~~ 377 (457)
T 2csu_A 369 VDMLIAICV 377 (457)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 999999763
No 205
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=36.61 E-value=14 Score=25.65 Aligned_cols=74 Identities=16% Similarity=0.050 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC--CCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCccc
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV--MPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~--D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDG 128 (167)
..=.+.-.|.|++.|..+..=.|.-..+++++.....+|.+ |++-|-| ..+||+++...+...--..|..|.||
T Consensus 24 ~kr~~kv~k~l~~yG~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv-~iy~l~~~~~~~~~~~G~~~~~d~~~ 99 (103)
T 3oq2_A 24 QRRLRRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLSEMDKEKDCL-RFYYLGANWRNKVEHVGAKPAYDPEG 99 (103)
T ss_dssp HHHHHHHHHHHGGGEEEEETTEEEEEECHHHHHHHHHHHHHHSCTTTCEE-EEEEEETTGGGGEEEEESCCSSSTTS
T ss_pred HHHHHHHHHHHHHhCccceEEEEEEEcCHHHHHHHHHHHHHhcCCCCCEE-EEEEeCccccceEEEECCCCCCCCCC
Confidence 34556788999999977665555556777777766666654 4444454 44577765432222222345555554
No 206
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=36.24 E-value=30 Score=24.81 Aligned_cols=82 Identities=9% Similarity=0.021 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHc-C--ceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccCCc
Q 031035 56 YVSMKRKACAEV-G--IKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHP 131 (167)
Q Consensus 56 Y~~~k~k~~~~~-G--i~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~ 131 (167)
+++...+.++.+ | -.+..+.++.+.+.+++.+.+++. .+-+. +|+||+-=|+.+--.+.....+...+++.-++-
T Consensus 16 ~A~gl~~~~~~i~G~~~~i~ai~~~~~~~~~~~~~~i~~~i~~~~~-~gvliLtDl~GGSp~n~a~~~~~~~~~v~vi~G 94 (142)
T 3bed_A 16 MAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGN-VPTLVLADLXGGTPCNVAMMAMGTYPQLRVVAG 94 (142)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHHCS-CCEEEEESSTTSHHHHHHHHHTTTCTTEEEEES
T ss_pred HHHHHHHHHHHHcCCCCCEEEEEecCCCCHHHHHHHHHHHHHhcCC-CCEEEEEECCCCHHHHHHHHHhccCCCEEEEeC
Confidence 445555555554 4 356667777666655554444332 22234 699999888766544555555555456777777
Q ss_pred ccHHHhh
Q 031035 132 LNIGKLA 138 (167)
Q Consensus 132 ~NlG~l~ 138 (167)
.|+.-+.
T Consensus 95 vNlpmll 101 (142)
T 3bed_A 95 LNLAMAI 101 (142)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 7887664
No 207
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=36.20 E-value=53 Score=23.73 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcc-CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec
Q 031035 24 EIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID 75 (167)
Q Consensus 24 ~lk~~v~~l~~~~-g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~ 75 (167)
.+++.+++++++. |..|.|.++...++. +. |-..|...+.+.||.+..+.
T Consensus 70 ~l~~~~~~~~~~~~~~~pqlv~~ilp~~~-~~-Y~~iK~~~~~~~gi~tqcv~ 120 (150)
T 4g0m_A 70 LLRSVIDEASRKHGGARPTLVLCAMSRKD-DG-YKTLKWIAETKLGLVTQCFL 120 (150)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEESSCC-TH-HHHHHHCCCCCSCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEECCCC-cc-HHHHHHHHhhccCcceEEee
Confidence 4444445454332 346788888877654 34 98887777779999887764
No 208
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.16 E-value=1.3e+02 Score=22.26 Aligned_cols=73 Identities=11% Similarity=-0.067 Sum_probs=41.7
Q ss_pred HHHHHhccCCCceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh-cCCC-CCcEEEEe
Q 031035 29 VRLLSEKYGKVPGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL-NVMP-DVHGILVQ 104 (167)
Q Consensus 29 v~~l~~~~g~~P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~-~V~GIlvq 104 (167)
++.|.++ |. -+++++.-.. .+.+..-.+.-.+.+++.|+....+.. .+.+.++..+.++++ ...+ .++||+..
T Consensus 112 ~~~L~~~-G~-~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ai~~~ 187 (272)
T 3o74_A 112 AASLLSS-AP-RSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQG-EAFSRECGQRLMQQLIDDLGGLPDALVTT 187 (272)
T ss_dssp HHHHHTT-CC-SEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEE-SSSSHHHHHHHHHHHHHHHTSCCSEEEES
T ss_pred HHHHHHC-CC-cEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeec-CCCCHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 3444444 43 3566654432 234445556677888999998765543 334555544444443 3345 68999984
No 209
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=35.69 E-value=65 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=25.5
Q ss_pred HHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.+.|++.||.+..+. +.+...+++.+.+++++-|
T Consensus 51 l~~A~~~gIp~~~~~-~~~~~~~~~~~~L~~~~~D 84 (215)
T 3kcq_A 51 LLIAQSYGIPTFVVK-RKPLDIEHISTVLREHDVD 84 (215)
T ss_dssp HHHHHHTTCCEEECC-BTTBCHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEeC-cccCChHHHHHHHHHhCCC
Confidence 578999999987654 2334558899999988665
No 210
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=35.52 E-value=48 Score=25.27 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=35.3
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHH
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVH 90 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 90 (167)
.+|.++...+++.....+...+..++++||++++..++ ..++.+.+.
T Consensus 128 l~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~~----~~~~~~~~~ 174 (258)
T 3lvu_A 128 LALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVD----NAQYTARVA 174 (258)
T ss_dssp CCCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEEC----HHHHHHHHH
T ss_pred EEEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEecC----HHHHHHHhc
Confidence 45666655557778888889999999999999988764 355666654
No 211
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=35.39 E-value=1.2e+02 Score=21.61 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=45.7
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
..||.....-.++..++...+.+++.|++++.+.+.+. +.+++...+.. -++|++=.|.-.+
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~------~d~ii~Gspty~g 64 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV-DPQELIEAVSS------ARGIVLGTPPSQP 64 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC-CHHHHHHHHHH------CSEEEEECCBSSC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHHh------CCEEEEEcCCcCC
Confidence 55666666667888888888888899999999988653 45555554443 3699999998754
No 212
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A*
Probab=35.33 E-value=86 Score=24.92 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHHhccCCCceEEEE---EECCC-----cchHHHHHHHHH-HHHHcCceeeeecCCCCC---------------
Q 031035 25 IAEEVRLLSEKYGKVPGLAVV---IVGGR-----KDSQSYVSMKRK-ACAEVGIKSFDIDLPEQV--------------- 80 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii---~vg~d-----~as~~Y~~~k~k-~~~~~Gi~~~~~~l~~~~--------------- 80 (167)
+++++..++.+ |.+.-|+|= ...+. .+...|+++..+ .+++.|++-..+...-..
T Consensus 68 ~~~~i~~~q~~-g~KVllSIGG~~~~~~~~~~~~~~r~~fa~s~~~~~l~~yg~DGiDiDwEy~~~~~~~~~~~pg~~~~ 146 (290)
T 1eok_A 68 LDTQIRSLQSR-GIKVLQNIDDDVSWQSSKPGGFASAAAYGDAIKSIVIDKWKLDGISLDIEHSGAKPNPIPTFPGYAAT 146 (290)
T ss_dssp HHHHHHHHHTT-TCEEEEEEECCGGGGSSSGGGSSSHHHHHHHHHHHHTTTTCCCEEEEECCCCCCCCSSCCCCCCHHHH
T ss_pred HHHHHHHHHhC-CCEEEEEeCCCcCCCCccccchhHHHHHHHHHHHHHHHhcCCCcEEEecCCCCccccccccccccccc
Confidence 44556666654 654444431 01122 334789999999 999999888777653211
Q ss_pred --------C---HHHHHHHHHHhcCC
Q 031035 81 --------S---EAELISKVHELNVM 95 (167)
Q Consensus 81 --------~---~~el~~~I~~lN~D 95 (167)
+ -+.+...|++|.+.
T Consensus 147 g~~~~~~~~~~~~~~~~~~l~el~~~ 172 (290)
T 1eok_A 147 GYNGWYSGSMAATPAFLNVISELTKY 172 (290)
T ss_dssp SCSSCCTTSCCCCHHHHHHHHHHTTT
T ss_pred ccccccCcchHHHHHHHHHHHHHHHH
Confidence 1 26788888888764
No 213
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.29 E-value=76 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 80 VSEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 80 ~~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
.+++++++.+.+ |+.|+.+|+
T Consensus 76 ls~~~~~~lm~~-------~P~LikRPi 96 (141)
T 1s3c_A 76 FTDDQLIDFMLQ-------HPILINRPI 96 (141)
T ss_dssp CCHHHHHHHHHH-------SGGGBCSCE
T ss_pred CCHHHHHHHHHh-------CccceEccE
Confidence 455555555555 566777776
No 214
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.25 E-value=1.7e+02 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=41.3
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhcC--CCCCcEEEE
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELNV--MPDVHGILV 103 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~--D~~V~GIlv 103 (167)
+.++.-|+...+..-.....|.+++-||.+.++-|-.+ ..++.+.+.++..|. ..+-|=+-|
T Consensus 110 IIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 110 IVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp EEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 33333355455656666778999999999999999753 444556667888887 345553333
No 215
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=34.54 E-value=86 Score=23.03 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=35.4
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
|+++||- +.+| |..+..++.++.|.+++.+..+. +.+++.+.+...+ -++ +|..|=|..
T Consensus 1 ~~i~iiD---n~~s--~~~~i~~~l~~~G~~~~v~~~~~--~~~~i~~~l~~~~----~~~-iil~gGpg~ 59 (192)
T 1i1q_B 1 ADILLLD---NIDS--FTWNLADQLRTNGHNVVIYRNHI--PAQTLIDRLATMK----NPV-LMLSPGPGV 59 (192)
T ss_dssp CEEEEEE---CSCS--SHHHHHHHHHHTTCEEEEEETTS--CSHHHHHHHTTCS----SEE-EEECCCSSC
T ss_pred CcEEEEE---CCcc--HHHHHHHHHHHCCCeEEEEECCC--CHHHHHHHhhhcc----CCe-EEECCCCcC
Confidence 3455554 4555 66678888889999998887653 3355544443322 246 555565554
No 216
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.46 E-value=86 Score=22.82 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=41.7
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHH-cCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAE-VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~ 109 (167)
.++.+|.......+...++...+.+++ .|++++.+.+.+. +. ..+.+ -|+|++..|.-.
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~-~~-------~~l~~---aD~ii~gsP~y~ 64 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA-TK-------EDVLW---ADGLAVGSPTNM 64 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC-CH-------HHHHH---CSEEEEEEECBT
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC-CH-------HHHHh---CCEEEEEeCccC
Confidence 456677666555677788888888888 8999999988653 22 22221 369999999864
No 217
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=33.98 E-value=1.8e+02 Score=24.06 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee---cCC------------CCCCHHHHHHHH
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI---DLP------------EQVSEAELISKV 89 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~---~l~------------~~~~~~el~~~I 89 (167)
+...+.+| +++| .++|..| +-|..=+.....+-|..|+.+--| +|| .-.+.+|+-+.+
T Consensus 139 ISaDL~eL----~rTp-V~VVcaG--~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaF~tr~Sg~~~p~~d~~~e~A~~~ 211 (297)
T 1vkm_A 139 VSQDLTEM----SSSR-AVLVSSG--IKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIY 211 (297)
T ss_dssp BCHHHHHH----TTCC-EEEEESB--BCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCBCCEECSHHHHHHHH
T ss_pred cchhHHHh----cCCC-eEEEecc--cchhhcchhHHHHHHhCCceEEEecCCCCCceecCCCCCcCCCCCCHHHHHHHH
Confidence 33455566 5667 5566666 456666777888889999887777 344 114566766666
Q ss_pred HHhcCCCCCcEEEEeCCCCC--CCCHHHHHhcCCCCC-Cccc--CCcccHHHhhc
Q 031035 90 HELNVMPDVHGILVQLPLPK--HINEEKVLGEISLEK-DVDG--FHPLNIGKLAM 139 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~--~id~~~i~~~I~P~K-DVDG--l~~~NlG~l~~ 139 (167)
+.-.+-.--.|+++--|+|. .+|.+.+-..|.-.- ++.| +||+=++++..
T Consensus 212 ~~~~~lgl~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ei~Gk~vTPflL~~i~e 266 (297)
T 1vkm_A 212 ESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVE 266 (297)
T ss_dssp HHHHHTTCCSEEEEECCCCGGGCCCHHHHHHHHHTCCCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEcCCChhhcCCHHHHHHHHHHHHHHhhCcccChHHHHHHHH
Confidence 54433333469999999997 677666554443211 1333 36776666654
No 218
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=33.83 E-value=1.3e+02 Score=23.53 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=37.5
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
-++++|.-.+++.+....+.-.+.+++.|+.+....++.. .+....++.+.. .+.+.|++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~----~~~d~v~~ 210 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS----FNPDAIYI 210 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH----TCCSEEEE
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh----cCCCEEEE
Confidence 3788776545666666778888999999998754434432 233344444443 23577877
No 219
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=33.58 E-value=1.1e+02 Score=23.81 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHc-------CceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 56 YVSMKRKACAEV-------GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 56 Y~~~k~k~~~~~-------Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..+....+++++ |..++++......+.+...+.+++|-.++.|+||+.
T Consensus 24 ~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 78 (358)
T 3hut_A 24 FQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLG 78 (358)
T ss_dssp HHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEc
Confidence 334444455554 333444444444555666666666665666777764
No 220
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.32 E-value=1.2e+02 Score=22.75 Aligned_cols=32 Identities=6% Similarity=-0.086 Sum_probs=21.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceee
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSF 72 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~ 72 (167)
++++|.-..++.+..-.+.-.+.+++.|+.+.
T Consensus 139 ~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~ 170 (298)
T 3tb6_A 139 HMMGIFKADDTQGVKRMNGFIQAHRERELFPS 170 (298)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 56666655554455555667788999998764
No 221
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=33.16 E-value=28 Score=24.49 Aligned_cols=41 Identities=22% Similarity=0.045 Sum_probs=31.0
Q ss_pred HHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 64 CAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 64 ~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+.-.||+.....-.++++.+++.+.++++-+++++-=|++.
T Consensus 15 FrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIt 55 (111)
T 2qai_A 15 FRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILIT 55 (111)
T ss_dssp HHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEE
T ss_pred HHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEc
Confidence 45678987765345556679999999999999887666664
No 222
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=33.10 E-value=58 Score=23.44 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI 74 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~ 74 (167)
..|.|.++...+ ..+..|-..|...+.+.||.+..+
T Consensus 81 ~~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv 116 (147)
T 4g0x_A 81 KEIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCC 116 (147)
T ss_dssp CCCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEE
T ss_pred CCCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEe
Confidence 345555555543 344556655555555666665544
No 223
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=32.88 E-value=1.2e+02 Score=23.35 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 12 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 12 ldGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+||.+-++...+.... +.+..+. .|.++.+.+......+.+...+.++..|+.++..........+.+.+..++
T Consensus 14 ~D~s~~s~~al~~A~~----la~~~~a--~l~ll~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~ 87 (290)
T 3mt0_A 14 IEPDQLEGLALKRAQL----IAGVTQS--HLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQA 87 (290)
T ss_dssp CCSSCSCCHHHHHHHH----HHHHHCC--EEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHH
T ss_pred eCCCccchHHHHHHHH----HHHhcCC--eEEEEEeeCcHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 6666555544444332 2222233 577777776556677777788888889999887765433345677777777
Q ss_pred hcCCCCCcEEEEeC
Q 031035 92 LNVMPDVHGILVQL 105 (167)
Q Consensus 92 lN~D~~V~GIlvq~ 105 (167)
.+.| -|++-.
T Consensus 88 ~~~d----liV~G~ 97 (290)
T 3mt0_A 88 EGCG----LIIKQH 97 (290)
T ss_dssp HTCS----EEEEEC
T ss_pred cCCC----EEEEec
Confidence 6555 555543
No 224
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=32.88 E-value=1.5e+02 Score=23.16 Aligned_cols=66 Identities=3% Similarity=-0.060 Sum_probs=44.8
Q ss_pred CCceEEEEEECCCcch---HHHHHHHHHHHHHcC-----ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 38 KVPGLAVVIVGGRKDS---QSYVSMKRKACAEVG-----IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 38 ~~P~Laii~vg~d~as---~~Y~~~k~k~~~~~G-----i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+-+++++.--..+.+ ....+....+++++| ..++++......+.+.-.+.+++|-+++.|+||+.
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 3456776665433322 345566777888886 33455555556677888899999988889999987
No 225
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus}
Probab=32.25 E-value=1e+02 Score=24.59 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCC------------cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGR------------KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d------------~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
.+.+++..++++ |.+. ++.+|.. ..-..|+++..+..++.|++-..+.+..-.+.+.+...+++
T Consensus 73 ~~~~~i~~~k~~-g~kv---llSiGG~~~~~fs~~~~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~ 148 (290)
T 2y8v_A 73 PLWAEVPVLKRS-GVKV---MGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDGLDLDVEEEMSLPGIIRLIDR 148 (290)
T ss_dssp HHHHHHHHHHHT-TCEE---EEEEECSSTTTTGGGSSCHHHHHHHHHHHHHHHHHHTCSEEEEECCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCEE---EEEECCCCCCCchhccCCHHHHHHHHHHHHHHHHHhCCCeEEEcccccchHHHHHHHHHH
Confidence 345566777765 6433 2333432 11246788999999999998888877554455667777766
Q ss_pred hcC
Q 031035 92 LNV 94 (167)
Q Consensus 92 lN~ 94 (167)
|.+
T Consensus 149 Lr~ 151 (290)
T 2y8v_A 149 LKL 151 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 226
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.05 E-value=1.6e+02 Score=22.72 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=29.7
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.++.|. .++|++ | -.+.|++.||.+..+.-..-.+ ++++++.+++++-|
T Consensus 31 eI~~Vi-sn~~~a--~---v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 83 (211)
T 3p9x_A 31 EVALLI-TDKPGA--K---VVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQID 83 (211)
T ss_dssp EEEEEE-ESCSSS--H---HHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEE-ECCCCc--H---HHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCC
Confidence 344443 345553 3 4578999999987654211112 46788888887655
No 227
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.94 E-value=1.4e+02 Score=23.97 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=50.9
Q ss_pred CCceEEEEEECCCcch--HHHHHHHHHHHHHcCceeeeecCCCCC--------CHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 031035 38 KVPGLAVVIVGGRKDS--QSYVSMKRKACAEVGIKSFDIDLPEQV--------SEAELISKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 38 ~~P~Laii~vg~d~as--~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--------~~~el~~~I~~lN~D~~V~GIlvq~PL 107 (167)
..+++.+|.-..++.| ..-++...+.+++.|++++.+.+.+.- ..+++.+.++++.+- |||++-.|.
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~A---DgiV~aSP~ 133 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWS---EGQVWCSPE 133 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHC---SEEEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHC---CeEEEEcCc
Confidence 3567777666666544 445667778888899999999885421 223444445454433 699999998
Q ss_pred CCCCC---HHHHHhcCC
Q 031035 108 PKHIN---EEKVLGEIS 121 (167)
Q Consensus 108 P~~id---~~~i~~~I~ 121 (167)
..+-= .+..++.+.
T Consensus 134 Yn~sipg~LKn~IDrl~ 150 (279)
T 2fzv_A 134 RHGQITSVMKAQIDHLP 150 (279)
T ss_dssp ETTEECHHHHHHHHHSC
T ss_pred cccCcCHHHHHHHHHHh
Confidence 65422 244555553
No 228
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=31.82 E-value=1.4e+02 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=43.1
Q ss_pred CceEEEEEECC----------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCC
Q 031035 39 VPGLAVVIVGG----------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMP 96 (167)
Q Consensus 39 ~P~Laii~vg~----------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 96 (167)
..++|+|.-+. ..++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.+
T Consensus 68 ~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~ 132 (305)
T 1f1j_A 68 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEED 132 (305)
T ss_dssp EEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEec---CcCHHHHHHHHHHHHHhh
Confidence 35577776544 23578889999999999999988774 779999999999987553
No 229
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=31.82 E-value=93 Score=24.87 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 50 d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
+.++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 44 R~Gt~~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 44 RNGTHLDAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLM 86 (271)
T ss_dssp CTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHh
Confidence 35677889999999999999988774 78999999999988653
No 230
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=31.72 E-value=2e+02 Score=23.12 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=40.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++|. . +.-....++.-.+.+++.|+.+...+........++...+.++.+. +.+.|++...
T Consensus 132 ~vaii~-d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~-~~~vii~~~~ 194 (389)
T 3o21_A 132 KFVYLY-D-TERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRR-QEKRYLIDCE 194 (389)
T ss_dssp EEEEEE-C-STTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTT-TCCEEEEESC
T ss_pred EEEEEE-c-CcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhC-CCeEEEEECC
Confidence 577776 4 4445555666778899999987766554322334677777776653 3677887544
No 231
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=31.61 E-value=1.6e+02 Score=23.34 Aligned_cols=88 Identities=7% Similarity=-0.021 Sum_probs=50.7
Q ss_pred HHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceee------eecCCCCCCHHHHHHHHHHhcCCCCCcEE
Q 031035 28 EVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSF------DIDLPEQVSEAELISKVHELNVMPDVHGI 101 (167)
Q Consensus 28 ~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~------~~~l~~~~~~~el~~~I~~lN~D~~V~GI 101 (167)
.++.+.++ +..-+|.++--|+......+.....+.+++.|+.-. .+.+....+.+++.+.+... | +
T Consensus 205 a~~~l~~~-~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~a------d-v 276 (413)
T 3oy2_A 205 AAARFISK-YPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNAC------D-V 276 (413)
T ss_dssp HHHHHHHH-CTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHC------S-E
T ss_pred HHHHHHHh-CCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhC------C-E
Confidence 34444433 333456655555444444455777888899999864 45566778889999988873 2 4
Q ss_pred EEeCCCCCCCCHHHHHhcCCCCC
Q 031035 102 LVQLPLPKHINEEKVLGEISLEK 124 (167)
Q Consensus 102 lvq~PLP~~id~~~i~~~I~P~K 124 (167)
+|+--..+++ ...+++++.-.+
T Consensus 277 ~v~pS~~E~~-~~~~lEAma~G~ 298 (413)
T 3oy2_A 277 IVNCSSGEGF-GLCSAEGAVLGK 298 (413)
T ss_dssp EEECCSCCSS-CHHHHHHHTTTC
T ss_pred EEeCCCcCCC-CcHHHHHHHcCC
Confidence 4432122222 234666665544
No 232
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=31.60 E-value=1.1e+02 Score=22.00 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=39.4
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHH-cCceeeeecCCCCCCHHHHHH------------HHHHhcCCCCCcEEEEeCCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAE-VGIKSFDIDLPEQVSEAELIS------------KVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~------------~I~~lN~D~~V~GIlvq~PL 107 (167)
++.+|.......+...++...+.+++ .|++++.+.+.+.... .+.. ..+++. +-|+|++..|.
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~---~aD~ii~gsP~ 78 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPP-QLFEKAGGKTQTAPVATPQELA---DYDAIIFGTPT 78 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCH-HHHHHTTCCCCCSCBCCGGGGG---GCSEEEEEEEE
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCch-hhhhhcccccccCchhhHHHHH---HCCEEEEEeCh
Confidence 34555554444556667777777777 7888888888765332 2211 022222 34799999998
Q ss_pred CCC
Q 031035 108 PKH 110 (167)
Q Consensus 108 P~~ 110 (167)
-.+
T Consensus 79 y~~ 81 (198)
T 3b6i_A 79 RFG 81 (198)
T ss_dssp ETT
T ss_pred hcC
Confidence 643
No 233
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.54 E-value=1.2e+02 Score=24.32 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC--CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE--QVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
|+.|.++- +|.+ |..=.-...|.|+++|.+.-...-|- ..+++++.+..+.+.+--++-=|+=..|-..+
T Consensus 72 grvpviaG--vg~~--~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg 143 (300)
T 3eb2_A 72 RRVPVVAG--VAST--SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQR 143 (300)
T ss_dssp TSSCBEEE--EEES--SHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCS
T ss_pred CCCcEEEe--CCCC--CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccC
Confidence 66776654 3432 22222345677788888877765443 24778888888887665554444444454333
No 234
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=31.23 E-value=78 Score=22.33 Aligned_cols=75 Identities=13% Similarity=-0.019 Sum_probs=49.4
Q ss_pred HHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHHh-----------cCCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCc
Q 031035 59 MKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHEL-----------NVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV 126 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~l-----------N~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDV 126 (167)
...+..++.||.++.++.|.. .|-+++.+.+.-- +.+. .=+++..|--.++|..++.+.+. |.+
T Consensus 4 ~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~--~~~l~vv~gd~~ld~~kl~~~~g--~~l 79 (152)
T 1wdv_A 4 KVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAG--GVYAVVIPGDKRLNINSMKELAG--KPV 79 (152)
T ss_dssp HHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTS--CEEEEEEETTCCBCHHHHHHHHT--SCE
T ss_pred HHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCC--cEEEEEEECchhhCHHHHHHHHC--CCc
Confidence 456788889999999999887 6666666554321 1121 23666777788999999988876 455
Q ss_pred ccCCcccHHHh
Q 031035 127 DGFHPLNIGKL 137 (167)
Q Consensus 127 DGl~~~NlG~l 137 (167)
.=.++.-+-++
T Consensus 80 ~~a~~~e~~~~ 90 (152)
T 1wdv_A 80 RLARANEVVEL 90 (152)
T ss_dssp EECCHHHHHHH
T ss_pred eeCCHHHHHHH
Confidence 54454444443
No 235
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=31.19 E-value=78 Score=22.73 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=39.4
Q ss_pred eEEEEEECCCc---chHHHHHHHHHHHHHcCceeeeecC-CC-CCCHHHHHHHHHHhc--------CCCCCcEEEEeCCC
Q 031035 41 GLAVVIVGGRK---DSQSYVSMKRKACAEVGIKSFDIDL-PE-QVSEAELISKVHELN--------VMPDVHGILVQLPL 107 (167)
Q Consensus 41 ~Laii~vg~d~---as~~Y~~~k~k~~~~~Gi~~~~~~l-~~-~~~~~el~~~I~~lN--------~D~~V~GIlvq~PL 107 (167)
.-++|.++.+. ....+++...+.|...|+.+..-.. +. +...+++.+.++++- ..+.+.=+++-+|=
T Consensus 13 ~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lv~~il~~ 92 (147)
T 4g0x_A 13 NWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPD 92 (147)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTCCCCEEEEEECS
T ss_pred eEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCCCCeEEEEEeCC
Confidence 35667666543 4566899999999999998763221 11 112334444443321 23557778887664
No 236
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=31.05 E-value=1.3e+02 Score=20.96 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=41.2
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNV 94 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~ 94 (167)
-+.++=.|.+++-..|+..-++..++-|+.++.-.+.-.+ +-+++.+.|+++.+
T Consensus 11 e~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e 66 (109)
T 1yqh_A 11 SFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQ 66 (109)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHH
Confidence 3555666777778899999999999999999887664332 26889888888544
No 237
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=30.57 E-value=1.3e+02 Score=20.45 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 22 RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.++++..++++++.. +---+.|+|.+|.. .......|++..|++..... ++.++...-|+.+++.
T Consensus 35 edelkkyleefrkes--qnikvlilvsndee----ldkakelaqkmeidvrtrkv---tspdeakrwikefsee 99 (110)
T 2kpo_A 35 EDELKKYLEEFRKES--QNIKVLILVSNDEE----LDKAKELAQKMEIDVRTRKV---TSPDEAKRWIKEFSEE 99 (110)
T ss_dssp HHHHHHHHHHHTSST--TSEEEEEEESSHHH----HHHHHHHHHHTTCCEEEEEC---SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc--cCeEEEEEEcChHH----HHHHHHHHHhhceeeeeeec---CChHHHHHHHHHHhhc
Confidence 357888888886542 23345677777653 33456788999999988875 4778888888888765
No 238
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=30.12 E-value=57 Score=23.91 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=41.8
Q ss_pred CCceEEEEEECCC------cchHHHHHHHHHHHHHc-----Cceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 38 KVPGLAVVIVGGR------KDSQSYVSMKRKACAEV-----GIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 38 ~~P~Laii~vg~d------~as~~Y~~~k~k~~~~~-----Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.+|+.+||.+||. .+++.+. ..+..++. |++...+. +++ +.+++.+.|+++-++...|=|+.-=
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~--l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPR--AVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHH--HHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCcEEEEEEECCcccCCCCccCcHHH--HHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4688999998863 2333332 33444555 88876554 343 5688999998876444567777764
Q ss_pred CC
Q 031035 106 PL 107 (167)
Q Consensus 106 PL 107 (167)
=+
T Consensus 80 G~ 81 (167)
T 1uuy_A 80 GT 81 (167)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 239
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=29.71 E-value=1.6e+02 Score=22.10 Aligned_cols=63 Identities=3% Similarity=-0.085 Sum_probs=38.4
Q ss_pred eEEEEEEC-CCcchHHHHHHHHHHHHHc-CceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 41 GLAVVIVG-GRKDSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg-~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
++++|.-. +.+.+..-.+.-.+.+++. |+.+.... ..+.+.++..+.++++ ...+.+++|+..
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 202 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSV-SGNYDPVTSERVMRQVIDSGIPFDAVYCH 202 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEE-ECTTCHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeec-cCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 56655422 2234444555667788888 99886543 3444555555555544 455789999985
No 240
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=29.49 E-value=1.6e+02 Score=21.81 Aligned_cols=78 Identities=13% Similarity=-0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc----------CCCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcc
Q 031035 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN----------VMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127 (167)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN----------~D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVD 127 (167)
+...+..++.||.++.++.|+..|-+++.+.+...- .+.. .=+++..|--..+|..++.+.+.-.|.+.
T Consensus 22 ~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~-~~vlvvv~gd~~ld~kkl~~~lg~~k~l~ 100 (181)
T 1vki_A 22 TELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKD-QYFVLTVEENAVVDLKSVHKTIGAASRVS 100 (181)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTC-CEEEEEEETTCCBCTTTHHHHHTCSSSCE
T ss_pred HHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCC-eEEEEEEeCCCccCHHHHHHHhCCCCCeE
Confidence 356788899999999999988777777766543210 1111 23677777778899988888775223343
Q ss_pred cCCcccHHH
Q 031035 128 GFHPLNIGK 136 (167)
Q Consensus 128 Gl~~~NlG~ 136 (167)
=.++.-+-+
T Consensus 101 ~a~~eel~~ 109 (181)
T 1vki_A 101 FGRPEKMLE 109 (181)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 333333333
No 241
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.46 E-value=36 Score=21.30 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=28.7
Q ss_pred cCCcccHHHhhccCCCC---CCCCchHHHHHHHhhhccC
Q 031035 128 GFHPLNIGKLAMKGRDP---LFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~---~~~PcTp~avi~lL~~~~~ 163 (167)
|+++.-+.+++.| .+ .+-|-|..-|.+.++.+|.
T Consensus 11 GVS~sTVSrvLng--~~~~~~vs~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 11 GVSRTTASYVING--KAKQYRVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp TSCHHHHHHHHHT--CTTTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 7888888899988 55 6788999999999988875
No 242
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=29.41 E-value=77 Score=20.68 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcCCCCCcEEEE
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlv 103 (167)
--|=+..++..++.|++++.+.+.... ..+++.+.+.++|.-..|=-|.+
T Consensus 32 Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i 83 (103)
T 3nzn_A 32 CVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII 83 (103)
T ss_dssp CHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE
Confidence 456677778889999999998886421 23466777777776666655555
No 243
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=29.35 E-value=89 Score=24.23 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHH-HcCceeeeecCC
Q 031035 12 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACA-EVGIKSFDIDLP 77 (167)
Q Consensus 12 ldGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~-~~Gi~~~~~~l~ 77 (167)
.||..-.+.|+.+|++++.. -+..|+++|++-....|+++-+..|. +.|+....+...
T Consensus 60 rDsS~~e~tIKrrLReRI~~--------Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDN--------SKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHT--------EEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETT
T ss_pred cccccHHHHHHHHHHHHHHh--------cCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECC
Confidence 45444355677788777653 26889999999888889999999999 999998888765
No 244
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=29.22 E-value=95 Score=21.64 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCC-CCHHHHHHHHHH
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQ-VSEAELISKVHE 91 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~ 91 (167)
.|-+...+..++.|++++.+.+.++ .+.+++.+.+.+
T Consensus 12 ~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~ 49 (132)
T 1z3e_A 12 TSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRM 49 (132)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHH
Confidence 4556667777777888777777543 455666665543
No 245
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=29.07 E-value=2e+02 Score=22.14 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.|++.||.+..+.-..-.+ ++++++.+++++-|
T Consensus 50 l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 88 (209)
T 4ds3_A 50 LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPD 88 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCC
Confidence 478999999987654211112 36788888888666
No 246
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.04 E-value=54 Score=21.47 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=25.3
Q ss_pred Cccchh---hhccc--HHHHHHHHHHHHHHHHHHHhcc
Q 031035 4 PSDQKA---TIIDG--KAVAQTIRSEIAEEVRLLSEKY 36 (167)
Q Consensus 4 ~~~~m~---~ildG--k~la~~i~~~lk~~v~~l~~~~ 36 (167)
+++||+ .+|.| ..-+.+|+..+.+.....|++.
T Consensus 1 ~~~mMTnLE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL 38 (70)
T 2uwj_E 1 GSHMMTALETRLSVADGTHAAALRQRLQAALAECRREL 38 (70)
T ss_dssp CTTCSSHHHHHHTSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467885 46777 6678889999999888887663
No 247
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=28.95 E-value=35 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 79 QVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 79 ~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
..+.+++.+.|+++.+|++|.+|++..--|
T Consensus 28 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~ 57 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDDKTVKGIVLKVNSP 57 (240)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred CcCHHHHHHHHHHHHhCCCcEEEEEEecCC
Confidence 456799999999999999999999975434
No 248
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=28.89 E-value=89 Score=24.76 Aligned_cols=53 Identities=6% Similarity=0.087 Sum_probs=39.9
Q ss_pred ceEEEEEECC---------CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 40 PGLAVVIVGG---------RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 40 P~Laii~vg~---------d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.++|+|.-+. ..++..=++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 20 rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 20 RGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYK---DCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEE---ECSHHHHHHHHHHHHTS
T ss_pred ccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHh
Confidence 3566665443 23566778899999999999988775 78999999999999865
No 249
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=28.86 E-value=1e+02 Score=21.52 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCC--CHHHHHHHHHHhcCC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVM 95 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D 95 (167)
+.++=.|.+++-..|+..-++..++-|+.+++-.+.-.+ +-+++.+.|+++.+-
T Consensus 20 ~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~pmgT~IEGe~devm~vvk~~~e~ 75 (106)
T 1vk8_A 20 IKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVKELARY 75 (106)
T ss_dssp EEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHH
Confidence 444545766777889999999999999999887664332 268888888886543
No 250
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.71 E-value=1.8e+02 Score=21.96 Aligned_cols=62 Identities=13% Similarity=-0.025 Sum_probs=32.9
Q ss_pred eEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH---hcCCCCCcEEEEe
Q 031035 41 GLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE---LNVMPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~---lN~D~~V~GIlvq 104 (167)
++++|.-.. .+.+..-.+.-.+.+++.|+.+..+ ..+.+.++-.+.+++ |...+.+++|+..
T Consensus 126 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 191 (285)
T 3c3k_A 126 RIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRI--SYAENLDYMAGKLATFSLLKSAVKPDAIFAI 191 (285)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEE--EECSSSSHHHHHHHHHHHHSSSSCCSEEEES
T ss_pred eEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEe--ecCCChHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 456554322 1223333445567888889876522 122222333344444 4556789999984
No 251
>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina}
Probab=28.28 E-value=2.2e+02 Score=22.56 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEECC-Ccc--------------hHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHH
Q 031035 23 SEIAEEVRLLSEKYGKVPGLAVVIVGG-RKD--------------SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (167)
Q Consensus 23 ~~lk~~v~~l~~~~g~~P~Laii~vg~-d~a--------------s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (167)
..+.+++..++.+ |++.-|+ +|. ..+ -..|+++..+..++.|++...+......+.+.+..
T Consensus 62 ~~l~~~i~~~q~~-g~Kvlls---iGG~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~dG~D~d~e~~~~~~~~~~ 137 (283)
T 4ac1_X 62 YTLWNETITMKQA-GVKVMGM---VGGAAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNFQLEGMDLDVEQPMSQQGIDR 137 (283)
T ss_dssp HHHHHHHHHHHHT-TCEEEEE---EETTSSCSSSTTTTTCSSHHHHHHHHHHHHHHHHHTTCSEEEEECCSCBCHHHHHH
T ss_pred HHHHHHHHHHHcC-CCEEEEE---EcCCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCceEeecccCCCHHHHHH
Confidence 4566777888766 6554333 343 111 13467788999999999999999877778778888
Q ss_pred HHHHhcCCCCCcEEEEeCC
Q 031035 88 KVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 88 ~I~~lN~D~~V~GIlvq~P 106 (167)
.|++|.++-.=+.+|-.-|
T Consensus 138 li~~Lr~~~g~~~~lT~Ap 156 (283)
T 4ac1_X 138 LIARLRADFGPDFLITLAP 156 (283)
T ss_dssp HHHHHHHHHCTTSEEEECC
T ss_pred HHHHHHHHcCCCceEEEcc
Confidence 8877765422245555544
No 252
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=28.13 E-value=2e+02 Score=24.14 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=40.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
+.++|.. +|.-.....+.-.+.+++.|+.+... .++.+.+..++...+.+.-+..+.+.|++..
T Consensus 187 ~V~ii~~-dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~ 251 (479)
T 3sm9_A 187 YVSTVAS-EGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFM 251 (479)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEEEEe-cchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEc
Confidence 5565554 56666677778888899999877643 3565555677777773433345667777754
No 253
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=28.05 E-value=1.8e+02 Score=21.31 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCCceEEEEEECCCcch---HHHHH---HHHHHHHHc--CceeeeecCCCCC--------CHHHHHHHHHH-hcCCCCCc
Q 031035 37 GKVPGLAVVIVGGRKDS---QSYVS---MKRKACAEV--GIKSFDIDLPEQV--------SEAELISKVHE-LNVMPDVH 99 (167)
Q Consensus 37 g~~P~Laii~vg~d~as---~~Y~~---~k~k~~~~~--Gi~~~~~~l~~~~--------~~~el~~~I~~-lN~D~~V~ 99 (167)
...|.+++|.+|-|... ..|.+ ...+.+++. +..+....++... ...++-+.+++ +.+..+|+
T Consensus 91 ~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~ 170 (232)
T 1es9_A 91 HIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAH 170 (232)
T ss_dssp TCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEE
T ss_pred cCCCCEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCE
Confidence 35799999999987543 33333 344444443 6666665554321 12445566666 65665543
Q ss_pred EEEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhc
Q 031035 100 GILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAM 139 (167)
Q Consensus 100 GIlvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~ 139 (167)
=| .+...+.... ..+.+.=-.||+||.-.|.-..
T Consensus 171 ~i----D~~~~~~~~~--g~~~~~~~~Dg~Hpn~~G~~~~ 204 (232)
T 1es9_A 171 FL----DADPGFVHSD--GTISHHDMYDYLHLSRLGYTPV 204 (232)
T ss_dssp EE----CCCCCCSCTT--SCCCTTTBTTSSSBCHHHHHHH
T ss_pred EE----eChHHhcCCC--CCcChhhcCCCCCCCHHHHHHH
Confidence 33 2222221100 0111221249999998887544
No 254
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=27.97 E-value=1.8e+02 Score=21.41 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=37.7
Q ss_pred eEEEEEECCCc-c--hHHHHHHHHHHHHHc--CceeeeecCCCC----CC----------------HH------HHHHHH
Q 031035 41 GLAVVIVGGRK-D--SQSYVSMKRKACAEV--GIKSFDIDLPEQ----VS----------------EA------ELISKV 89 (167)
Q Consensus 41 ~Laii~vg~d~-a--s~~Y~~~k~k~~~~~--Gi~~~~~~l~~~----~~----------------~~------el~~~I 89 (167)
++.+|....++ . +..-++...+.+++. |.+++.+.|.+. .+ .+ .+.+.+
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLV 82 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34455555554 2 344455556666666 788887776433 11 00 133444
Q ss_pred HHhcCCCCCcEEEEeCCCCCC
Q 031035 90 HELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 90 ~~lN~D~~V~GIlvq~PLP~~ 110 (167)
+++.+- |+|++..|+-..
T Consensus 83 ~~l~~A---D~iV~~~P~y~~ 100 (212)
T 3r6w_A 83 GELFDS---DLLVISTPMYNF 100 (212)
T ss_dssp HHHHHC---SEEEEEEECBTT
T ss_pred HHHHhC---CEEEEEcCcccc
Confidence 444433 699999998654
No 255
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=27.96 E-value=69 Score=22.04 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 63 ACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 63 ~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
-+.-+||+... +..+.+|+.+.++++-+++++-=|++-.-+-+.+.
T Consensus 23 GFrLaGi~~~~----~~~~~ee~~~~~~~l~~~~digIIlIte~ia~~i~ 68 (102)
T 2i4r_A 23 GFMLAGISDIY----EVTSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLP 68 (102)
T ss_dssp HHHHTTCCCEE----ECCSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSC
T ss_pred HHHHcCCCccc----CCCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHH
Confidence 34567888644 33577999999999999999988888887777764
No 256
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.84 E-value=2e+02 Score=21.93 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=36.7
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
-++++|.-. +.+.+....+.-.+.+++.|+++.... ..+.+.++..+.++++ ...+.+++|+..
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 189 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDIL-NDEEDGARAVSLAEAALNAHPDLDAFFGV 189 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEE-ECSSCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEee-cCCCCHHHHHHHHHHHHHHCcCceEEEEc
Confidence 366665433 223344445556778888999875432 2334555444444443 345779999985
No 257
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=27.78 E-value=76 Score=23.14 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=35.4
Q ss_pred eEEEEEECCCcch--HHHHHHHHHHHHHcCceeeeecCCCC----------CCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 41 GLAVVIVGGRKDS--QSYVSMKRKACAEVGIKSFDIDLPEQ----------VSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 41 ~Laii~vg~d~as--~~Y~~~k~k~~~~~Gi~~~~~~l~~~----------~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
++.+|....++.| ..-++...+.++ -|.+++.+.+.+- ...+++.+.++++.+- |+|++..|.-
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~a---D~ii~~sP~y 83 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAA---DALLFATPEY 83 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHC---SEEEEECCEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhC---CEEEEEcccc
Confidence 4555554444332 233333333333 3777777776541 1124555555665443 6999999986
Q ss_pred CC
Q 031035 109 KH 110 (167)
Q Consensus 109 ~~ 110 (167)
..
T Consensus 84 ~~ 85 (193)
T 1rtt_A 84 NY 85 (193)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 258
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=27.46 E-value=1.1e+02 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=33.5
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++||-.|+ .|..+..++.+++|++++.+.+.. +.+++. . .+.|||++-
T Consensus 25 ~~I~iiD~g~-----~~~~~i~~~l~~~G~~~~vv~~~~--~~~~l~----~----~~~dglil~ 74 (218)
T 2vpi_A 25 GAVVILDAGA-----QYGKVIDRRVRELFVQSEIFPLET--PAFAIK----E----QGFRAIIIS 74 (218)
T ss_dssp TCEEEEECST-----TTTHHHHHHHHHTTCCEEEECTTC--CHHHHH----H----HTCSEEEEE
T ss_pred CeEEEEECCC-----chHHHHHHHHHHCCCEEEEEECCC--ChHHHh----h----cCCCEEEEC
Confidence 6788887774 233567788889999888776543 333332 2 357899983
No 259
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=27.46 E-value=2.4e+02 Score=22.73 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCC-CHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQV-SEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.+++...+...++|..+..-+|.-.. ..+.+.+.++.+-+-+.|.||.+--.
T Consensus 216 ~~~~~~l~~~a~~G~pv~iTEldi~~~qa~~y~~~~~~~~~~~~v~git~Wg~ 268 (313)
T 1v0l_A 216 SNFRTTLQNFAALGVDVAITELDIQGAPASTYANVTNDCLAVSRCLGITVWGV 268 (313)
T ss_dssp TTHHHHHHHHHTTTCEEEEEEEEETTCCHHHHHHHHHHHHTCTTEEEEEESCS
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCccHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 44455555566888887777764432 33445555666666788899887643
No 260
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=27.31 E-value=71 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.|.+...+..++.|+++....++.+.+.+.+.+.++.+.+ +.|.|+-
T Consensus 105 ~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~--~~D~IIA 151 (450)
T 1ta9_A 105 ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD--DTQVIIG 151 (450)
T ss_dssp HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT--TCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh--CCCEEEE
Confidence 5777777888889998854556777777777777776665 7888873
No 261
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=27.23 E-value=61 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.1
Q ss_pred HHHHHcCce-eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 62 KACAEVGIK-SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 62 k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
..++..|.+ .--.++....+.+.+.+.++.+..||+|++|+|-.
T Consensus 274 D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni 318 (388)
T 2nu8_B 274 DIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNI 318 (388)
T ss_dssp HHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred HHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 445555542 23345567788999999999999999999999953
No 262
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=27.17 E-value=1.9e+02 Score=21.31 Aligned_cols=77 Identities=10% Similarity=-0.099 Sum_probs=50.4
Q ss_pred HHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcC---------CCCCcEEEEeCCCCCCCCHHHHHhcCCCCCCcccC
Q 031035 59 MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNV---------MPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129 (167)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~---------D~~V~GIlvq~PLP~~id~~~i~~~I~P~KDVDGl 129 (167)
...+..++.||.++.++.|...|-+++.+.+..... +++=.=+++..|--..+|..++.+.+.. |.+.=.
T Consensus 18 ~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~-k~l~~a 96 (180)
T 1vjf_A 18 DLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGS-GRLSFG 96 (180)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTC-SCEEEC
T ss_pred HHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCC-CCeeeC
Confidence 457788999999999999988887777766543210 0111246777787889999998887754 234333
Q ss_pred CcccHHH
Q 031035 130 HPLNIGK 136 (167)
Q Consensus 130 ~~~NlG~ 136 (167)
++.-+-+
T Consensus 97 ~~eel~~ 103 (180)
T 1vjf_A 97 PQEMMLE 103 (180)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 3333333
No 263
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=27.12 E-value=2.2e+02 Score=21.99 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHcCceeeeec---CCCCC-CHHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDID---LPEQV-SEAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~---l~~~~-~~~el~~~I~~lN~D 95 (167)
.+.|++.||.+..+. ++... -++++++.+++++-|
T Consensus 47 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 85 (215)
T 3tqr_A 47 LKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPK 85 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCC
Confidence 578999999987654 22111 145778888877555
No 264
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=27.10 E-value=2.1e+02 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.|++.||.+..+.-..-.+ ++++.+.+++++-|
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 81 (209)
T 1meo_A 43 LDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSID 81 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCC
Confidence 478999999987654322223 35677888877554
No 265
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=26.96 E-value=20 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 83 AELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.|+.+.++++...++|-|++|.-.
T Consensus 3 ~eveetl~ri~~~kgV~G~iI~n~ 26 (97)
T 3l7h_A 3 QEVEETLKRIQSHKGVVGTIVVNN 26 (97)
T ss_dssp ------CHHHHTSTTEEEEEEEET
T ss_pred HHHHHHHHHHhcCCCceEEEEECC
Confidence 378889999999999999999854
No 266
>2lu2_A H4, putative, microneme tgmic5 protein; micronemal protein 5, invasion, pathogenesis, cell adhesion; NMR {Toxoplasma gondii}
Probab=26.89 E-value=1e+02 Score=22.12 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHH-----HHcCce--------eeeecCCCCCCHHHH
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC-----AEVGIK--------SFDIDLPEQVSEAEL 85 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~-----~~~Gi~--------~~~~~l~~~~~~~el 85 (167)
+++.+++|+-+++-+. ...|.+.=+.|.+...|..|-+.....+ +++|-. +..++||.++++-++
T Consensus 38 ~~~~e~~keg~e~~k~--~~~~~m~rlmvt~k~~sk~fsk~~~s~s~~s~i~elggsis~ltetgvt~i~lp~tvs~~dm 115 (138)
T 2lu2_A 38 KEFQEEIKEGVEETKH--EGDPEMTRLMVTEKQESKNFSKMAKSQSFSTRIEELGGSISFLTETGVTMIELPKTVSEHDM 115 (138)
T ss_dssp ----------------------CCEEEEEECSTTTHHHHHHHTSHHHHHTTTTTTCEEEEETTTTEEEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCCccceeeeeeccccchhHHHHHHhhhHHHHHHHhCCEEEEEeccCcEEEecccchhhhhH
Confidence 3456677776666543 3468888999999999999876543222 566654 456888999998777
Q ss_pred HHHHHHhcCC
Q 031035 86 ISKVHELNVM 95 (167)
Q Consensus 86 ~~~I~~lN~D 95 (167)
-..|..+-+-
T Consensus 116 ~~l~~~i~aa 125 (138)
T 2lu2_A 116 DQLLHDILAA 125 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7766655433
No 267
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.89 E-value=2.5e+02 Score=22.70 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.+.+.++.|. +..|.-..|--|........--...+..++.|++.-.+----+.+.+++.+.+..+. +-.|+.|++
T Consensus 30 ~l~~~~~~L~---~~~pd~vsVT~~~~g~~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~-~~GI~niLa 105 (310)
T 3apt_A 30 ALFRTLEELK---AFRPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFV-ESGVENLLA 105 (310)
T ss_dssp HHHHHHHHHG---GGCCSEEEECCCSTTCSHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHH-HTTCCEEEE
T ss_pred HHHHHHHHHh---cCCCCEEEEecCCCCCcchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHH-HCCCCEEEE
Confidence 4445566664 235666666555443322221122333347899887776666789999999999988 668999998
Q ss_pred eC
Q 031035 104 QL 105 (167)
Q Consensus 104 q~ 105 (167)
..
T Consensus 106 Lr 107 (310)
T 3apt_A 106 LR 107 (310)
T ss_dssp EC
T ss_pred Ec
Confidence 76
No 268
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=26.77 E-value=1.1e+02 Score=24.69 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=43.5
Q ss_pred CCceEEEEEECCCc------chHHHHHHHHHHH---HHc--CceeeeecCCCCCC------HHHHHHHHHHhcCCCCCcE
Q 031035 38 KVPGLAVVIVGGRK------DSQSYVSMKRKAC---AEV--GIKSFDIDLPEQVS------EAELISKVHELNVMPDVHG 100 (167)
Q Consensus 38 ~~P~Laii~vg~d~------as~~Y~~~k~k~~---~~~--Gi~~~~~~l~~~~~------~~el~~~I~~lN~D~~V~G 100 (167)
.+|.+++|..|-|- ....|.+...+.. ++. +..+-....|.... .+.+.+.++++ .+++|+
T Consensus 224 ~~Pd~VvI~lG~ND~~~~~~~~~~~~~~l~~li~~ir~~~p~~~I~l~~~p~~~~~~~~~~~~~i~~~~~~~-~~~~v~- 301 (347)
T 2waa_A 224 YQPDLIISAIGTNDFSPGIPDRATYINTYTRFVRTLLDNHPQATIVLTEGAILNGDKKAALVSYIGETRQQL-HSNRVF- 301 (347)
T ss_dssp CCCSEEEECCCHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSSCCHHHHHHHHHHHHHHHHHH-CCTTEE-
T ss_pred CCCCEEEEEccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCccCCchhhHHHHHHHHHHHHh-CCCCEE-
Confidence 47888888888763 2234444333332 222 44444333222111 24455555566 444442
Q ss_pred EEEeCCCCCCCCHHHHHhcCCCCCCcccCCcccHHHhhcc
Q 031035 101 ILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMK 140 (167)
Q Consensus 101 Ilvq~PLP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g 140 (167)
+.++.. +. .+ | ||+||.-.|.-...
T Consensus 302 ---~id~~~-~~--------~~--~-DglHPn~~G~~~~A 326 (347)
T 2waa_A 302 ---YASSSH-HP--------GD--N-SDAHPTKDQHAAMA 326 (347)
T ss_dssp ---ECCCCC-CC--------CB--T-TBSSCCHHHHHHHH
T ss_pred ---EEEccC-cC--------CC--C-CCCCcCHHHHHHHH
Confidence 223332 11 12 3 99999999886654
No 269
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=26.72 E-value=1.4e+02 Score=25.21 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=28.5
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
+|.++...+++.....+...+..++++||++++..++
T Consensus 329 ~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~ 365 (486)
T 3rqt_A 329 KIKLITYDGRPELSKIAQVLQSDAKKANIEIDIKSVD 365 (486)
T ss_dssp EEEEEECSSSTHHHHHHHHHHHHHHTTTEEEEEEECS
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 4554444556667778888999999999999998875
No 270
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.60 E-value=1.8e+02 Score=20.99 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+..|+..+..++.|--.. =.+......+..|+++ +.+..+.+.+++.+.+.+. ++++=|+=..
T Consensus 16 ~~~~~vlla~~~gd~Hdi-G~~~va~~l~~~G~eV--i~lG~~~p~e~lv~aa~~~--~~diV~lS~~ 78 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDR-GAKVVARALRDAGFEV--VYTGLRQTPEQVAMAAVQE--DVDVIGVSIL 78 (161)
T ss_dssp CCSCEEEEEEESSSSCCH-HHHHHHHHHHHTTCEE--ECCCSBCCHHHHHHHHHHT--TCSEEEEEES
T ss_pred CCCCEEEEEeCCCCccHH-HHHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHhc--CCCEEEEEee
Confidence 678999988898865332 2334455677788765 4667788999999999886 4444444443
No 271
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=26.47 E-value=26 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 81 SEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 81 ~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.+++.+.++++..-++|-|+||.-.
T Consensus 10 ~~~evEe~l~RI~~~kgV~G~iIln~ 35 (106)
T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVVNT 35 (106)
T ss_dssp -----CHHHHHHHTSTTEEEEEEECT
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEcC
Confidence 45788999999999999999999854
No 272
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=26.42 E-value=1.1e+02 Score=23.07 Aligned_cols=45 Identities=4% Similarity=0.091 Sum_probs=32.0
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+|.++ .. ++....-+...+..++++||++++..++ ..++.+.+..
T Consensus 130 ~l~~~-~~-~~~~~~~a~~iq~~l~~iGI~v~i~~~~----~~~~~~~~~~ 174 (259)
T 3pam_A 130 QFEIM-TQ-SLEEEKVALAFQSNLSRLGIHAEIRTVD----DSQYQNRLGM 174 (259)
T ss_dssp EEEEE-ES-SHHHHHHHHHHHHHHHTTTCEEEEEECC----HHHHHHHHHH
T ss_pred EEEEE-eC-CchHHHHHHHHHHHHHHcCCEEEEEecC----HHHHHHHHhc
Confidence 45543 33 4666777888899999999999998764 3566666654
No 273
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=26.29 E-value=1.7e+02 Score=23.71 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 53 SQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
...|.+...+..++.|+++..+. .|+ -+.+.+.+. +.+.+ .+.+.|+-
T Consensus 46 ~~~~~~~v~~~L~~~g~~~~~~~~~~~-~~~~~v~~~-~~~~~-~~~d~IIa 94 (354)
T 3ce9_A 46 YELFGETIEKSIKSSNIEIEAVETVKN-IDFDEIGTN-AFKIP-AEVDALIG 94 (354)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEEECC-CBHHHHHHH-HTTSC-TTCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCC-CCHHHHHHH-HHhhh-cCCCEEEE
Confidence 33688888888888999988776 544 477777777 66655 56787773
No 274
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=26.18 E-value=2e+02 Score=21.21 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=36.2
Q ss_pred ceEEEEEEC-CCcchHHHHHHHHHHHHHc-CceeeeecCCCCCCHHHHHHHHHHh-cCCCCCcEEEEe
Q 031035 40 PGLAVVIVG-GRKDSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHEL-NVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg-~d~as~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~I~~l-N~D~~V~GIlvq 104 (167)
-++++|.-. +.+.+..-.+.-.+.+++. |+.+..+ +..+.+.+...+.++++ .+.+.+++|+..
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 194 (276)
T 3ksm_A 128 RNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA-PYAGDDRGAARSEMLRLLKETPTIDGLFTP 194 (276)
T ss_dssp EEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC-CBCCSSHHHHHHHHHHHHHHCSCCCEEECC
T ss_pred ceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE-ecCCCcHHHHHHHHHHHHHhCCCceEEEEC
Confidence 355554321 1223444455667778888 9987643 33444555555544443 345778999874
No 275
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=25.81 E-value=1.4e+02 Score=20.49 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=38.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC--HHHHHHHHHHhcC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--EAELISKVHELNV 94 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--~~el~~~I~~lN~ 94 (167)
+.++=.|++++-..|+..-++..++-|+.++.-.+.-.+. -+++.+.|+++.+
T Consensus 7 ~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e 61 (104)
T 2ibo_A 7 LQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALE 61 (104)
T ss_dssp EEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHH
Confidence 4555567667778899999999999999988776543322 5788888877543
No 276
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.70 E-value=82 Score=23.62 Aligned_cols=75 Identities=7% Similarity=-0.060 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCCceEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 24 EIAEEVRLLSEKYGKVPGLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 24 ~lk~~v~~l~~~~g~~P~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
..+..++.|.+. |.+ ++++|.-.. .+.+..-.+.-.+.+++.|+.+..+ +..+.+.++..+. |...+.++||+
T Consensus 109 ~g~~a~~~L~~~-G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~-~~~~~~~~~~~~~---l~~~~~~~ai~ 182 (277)
T 3e61_A 109 GGQLQAEVVRKG-KGK-NVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKML-EATLLDNDKKFID---LIKELSIDSII 182 (277)
T ss_dssp HHHHHHHHHHHT-TCC-SEEEEESCTTSHHHHHHHHHHHHHHHC---CEEEE-EGGGGGSHHHHHH---HHHHHTCCEEE
T ss_pred HHHHHHHHHHHC-CCC-eEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccce-ecCCCCHHHHHHH---hhcCCCCCEEE
Confidence 334444555544 543 455543222 2334444556678889999988763 3334444444444 55567889999
Q ss_pred Ee
Q 031035 103 VQ 104 (167)
Q Consensus 103 vq 104 (167)
..
T Consensus 183 ~~ 184 (277)
T 3e61_A 183 CS 184 (277)
T ss_dssp ES
T ss_pred EC
Confidence 85
No 277
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.64 E-value=2.1e+02 Score=22.17 Aligned_cols=64 Identities=13% Similarity=-0.059 Sum_probs=37.7
Q ss_pred ceEEEEEECCCcc---hHHHHHHHHHHHHHcCc-----eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 40 PGLAVVIVGGRKD---SQSYVSMKRKACAEVGI-----KSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 40 P~Laii~vg~d~a---s~~Y~~~k~k~~~~~Gi-----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
-+++++.--..+. .....+....++++.|- ..+++......+.+.-.+.+++|-+++.|+||+-
T Consensus 7 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG 78 (368)
T 4eyg_A 7 FKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAG 78 (368)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEC
Confidence 4555555433332 23344556666666553 3344444555566777777888877778888884
No 278
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=25.12 E-value=1.1e+02 Score=20.77 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=39.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCC--HHHHHHHHHHhcC
Q 031035 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--EAELISKVHELNV 94 (167)
Q Consensus 42 Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--~~el~~~I~~lN~ 94 (167)
+.++=.|++++-..|+..-++..++-|+.++.-.+.-.+. -+++.+.|+++.+
T Consensus 11 ~sv~Plg~~~svs~~Va~~i~~l~~sGl~y~~~pm~T~IEGe~devm~vv~~~~e 65 (100)
T 2epi_A 11 VSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEAHS 65 (100)
T ss_dssp EEEEEECBSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHH
Confidence 4555567667888999999999999999998876643322 5788888877643
No 279
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=25.08 E-value=44 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.2
Q ss_pred EEeCCCCCCCCHHHHHhcCCCCCCccc
Q 031035 102 LVQLPLPKHINEEKVLGEISLEKDVDG 128 (167)
Q Consensus 102 lvq~PLP~~id~~~i~~~I~P~KDVDG 128 (167)
+|-+=||+.+.++...+.|+|..++|=
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~ 38 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDY 38 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccce
Confidence 455668889999999999999887653
No 280
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=24.98 E-value=2.3e+02 Score=22.47 Aligned_cols=34 Identities=12% Similarity=-0.107 Sum_probs=18.8
Q ss_pred eeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 70 ~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
.++++......+.+.-.+.+++|-.++.|+||+.
T Consensus 49 ~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 49 NINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 4444444444455555555666654556666665
No 281
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=24.84 E-value=89 Score=20.99 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCCHHHH---HhcCCCCCCcccCCcccHHHhhccCCCCCCCCchHHH
Q 031035 78 EQVSEAELISKVHELN-VMPDVHGILVQLPLPKHINEEKV---LGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKA 153 (167)
Q Consensus 78 ~~~~~~el~~~I~~lN-~D~~V~GIlvq~PLP~~id~~~i---~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~~PcTp~a 153 (167)
++-|++|+++.|+++- .+.+-++ ...+ +..+-+ ||.=...+|.. +.-.-+||.+
T Consensus 8 ~DyTe~Efi~lv~~I~~~~~~~e~------------~d~ll~~f~~~te-------HP~gSDLIfyP---~~~~e~spE~ 65 (85)
T 1gxg_A 8 SDYTETEFKKIIEDIINCEGDEKK------------QDDNLEHFISVTE-------HPSGSDLIYYP---EGNNDGSPEA 65 (85)
T ss_dssp TTSCHHHHHHHHHHHHHTSSSSHH------------HHHHHHHHHHTTC-------CTTTTHHHHSC---CTTCCSSHHH
T ss_pred hhcCHHHHHHHHHHHHhCCCCchh------------HHHHHHHHHHhcC-------CCCcCceeecC---CCCCCCCHHH
Confidence 5678999999999984 3333444 1122 222222 45445667764 2346699999
Q ss_pred HHHHhhhcc
Q 031035 154 IILYSCLIN 162 (167)
Q Consensus 154 vi~lL~~~~ 162 (167)
|++....++
T Consensus 66 Iv~~ik~wR 74 (85)
T 1gxg_A 66 VIKEIKEWR 74 (85)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876553
No 282
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=24.51 E-value=56 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHH
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHE 91 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~ 91 (167)
.|-+...+..++.||+++.+.+.+ ..+.+++.+.+++
T Consensus 16 ~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~ 53 (120)
T 2kok_A 16 DTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKT 53 (120)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHH
Confidence 455555666666666666665532 2344555555544
No 283
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=24.50 E-value=2e+02 Score=23.67 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcC
Q 031035 56 YVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id~~~i~~~I 120 (167)
|.+...+..++.|+++..+. ..++-+.+.+.+.++.+.+. +.+.|+-.-= -.-+|.-+.....
T Consensus 57 ~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gsv~D~AK~iA~~ 120 (371)
T 1o2d_A 57 SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND-SFDFVVGLGG-GSPMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS-CCSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc-CCCEEEEeCC-hHHHHHHHHHHHH
Confidence 77778888889999876553 45667888888888888654 6788774200 0125555555543
No 284
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=24.22 E-value=2.6e+02 Score=22.01 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=39.0
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeee-cCCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
-++++|.- +++.+....+.-.+.+++.|+++... .++.+.+..++...++++.+. ..++|++..
T Consensus 141 ~~ia~i~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~-~pdaI~~~~ 205 (385)
T 1pea_A 141 ERVVFIGS-DYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQA-RADVVFSTV 205 (385)
T ss_dssp SEEEEEEE-SSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHH-TCSEEEEEC
T ss_pred cEEEEEeC-CChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHC-CCCEEEEec
Confidence 46777654 45555556667788899999986542 233323455565666665332 467887754
No 285
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=24.14 E-value=1.1e+02 Score=21.87 Aligned_cols=93 Identities=9% Similarity=0.070 Sum_probs=49.2
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC-C--CCcEEEEeCCCCCCCCHHHH
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM-P--DVHGILVQLPLPKHINEEKV 116 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~--~V~GIlvq~PLP~~id~~~i 116 (167)
.++.++-=|.. -+..+++.....+.+ =.++.+.+|.+.+.+++.+.+++.=+. + .=+|+|++-=+-.-.+ +
T Consensus 5 igiiIvtHG~s-~A~~l~~~a~~i~G~--~~~~aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n---~ 78 (139)
T 3gdw_A 5 VGVFVLMHGDS-TASSMLKTAQELLGT--SIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNS---F 78 (139)
T ss_dssp CEEEEEEESSS-HHHHHHHHHHHHHTC--CCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGG---H
T ss_pred eeEEEEcCCHH-HHHHHHHHHHHHcCc--ccEEEEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHH---H
Confidence 34444443421 344455555555544 245667778888877777766654322 1 3579999877621122 1
Q ss_pred HhcCCC--CCCcccCCcccHHHhh
Q 031035 117 LGEISL--EKDVDGFHPLNIGKLA 138 (167)
Q Consensus 117 ~~~I~P--~KDVDGl~~~NlG~l~ 138 (167)
...+.- ..++.-++-.|+--+.
T Consensus 79 a~~l~~~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 79 GNMLFEETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp HHHHHHHHCCCEEEECSCCHHHHH
T ss_pred HHHHHHhhCCCEEEEeCCCHHHHH
Confidence 112211 2356666666665444
No 286
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.12 E-value=1.1e+02 Score=22.59 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=22.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID 75 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~ 75 (167)
+.+||-.| + .|.++..++.+++|.+++++.
T Consensus 4 ~I~iiD~g----~-~n~~si~~al~~~G~~~~v~~ 33 (211)
T 4gud_A 4 NVVIIDTG----C-ANISSVKFAIERLGYAVTISR 33 (211)
T ss_dssp CEEEECCC----C-TTHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEECC----C-ChHHHHHHHHHHCCCEEEEEC
Confidence 56676444 2 367889999999999998864
No 287
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=24.09 E-value=1.5e+02 Score=21.60 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=29.6
Q ss_pred EEEEECCCcchHHHHHHHHHHHHHcCceeeeecC
Q 031035 43 AVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL 76 (167)
Q Consensus 43 aii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l 76 (167)
++..|+.|++...-.|..-|..++.|.+...++.
T Consensus 116 vie~v~~d~~~~~~AR~r~k~yr~~G~~l~~~~~ 149 (150)
T 3sxu_A 116 VVDFVPYEDSLKQLARERYKAYRVAGFNLNTATW 149 (150)
T ss_dssp EEEEECSSGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHCCCCcEEecC
Confidence 3447899999999999999999999999887753
No 288
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=24.08 E-value=2.1e+02 Score=20.92 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHhccCCCceEEEEEEC--CCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 30 RLLSEKYGKVPGLAVVIVG--GRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 30 ~~l~~~~g~~P~Laii~vg--~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
+.|.+. |.+ ++++|.-. +.+.+..-.+.-.+++++.|+..+.+ ..+.+.+.-.+.++++-+ +.+++|+..
T Consensus 108 ~~L~~~-G~~-~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~ai~~~ 179 (255)
T 1byk_A 108 QRLYDQ-GHR-NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAA--LPGLAMKQGYENVAKVIT-PETTALLCA 179 (255)
T ss_dssp HHHHHT-TCC-CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEE--CCCSCHHHHHHHSGGGCC-TTCCEEEES
T ss_pred HHHHHc-CCC-eEEEEecCCCCcccHHHHHHHHHHHHHHcCCCccee--ecCCccchHHHHHHHHhc-CCCCEEEEe
Confidence 334343 543 55555422 11333444455678889999976543 345566766677777654 568999874
No 289
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=24.03 E-value=1.6e+02 Score=24.99 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=30.0
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCC
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE 78 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~ 78 (167)
.+|.++...+++.....+...+..++++||++++..++.
T Consensus 330 l~l~l~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~~~~~ 368 (496)
T 3t66_A 330 LHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEV 368 (496)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 356555545567777788889999999999999988764
No 290
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=23.99 E-value=2e+02 Score=20.63 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
+|-+++++|.++. =.-|.|...|-|+..|..=..+.+-.+.+--|+++.+++.
T Consensus 4 k~i~~lv~v~~E~-l~n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REA 56 (126)
T 2rbg_A 4 KNILTLISVNNDN-FENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREA 56 (126)
T ss_dssp CSEEEEEECCGGG-HHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHH
T ss_pred CceEEEEecchhh-HHHHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHH
Confidence 5667777776433 3445566777777777776666666666666666655553
No 291
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=23.75 E-value=86 Score=23.41 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 031035 51 KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP 108 (167)
Q Consensus 51 ~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 108 (167)
+.+...+++....|+++|+.+...-. .+++-.+.++++.-| -+-|.....|+|
T Consensus 182 ~~~~~~~~~i~~~a~~lg~~viaeGV----Et~~~~~~l~~~G~~-~~QG~~~~~P~~ 234 (235)
T 3kzp_A 182 EDLLLFIKAWANFAQKNKLDFVVEGI----ETKETMTLLESHGVS-IFQGYLVNKPFP 234 (235)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEE----CSTHHHHHHHHTTCC-SCEEEECCCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEe----cCHHHHHHHHHcCCC-EeeeccccCCCC
Confidence 44556788888999999998765544 335667788888776 689999999986
No 292
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=23.68 E-value=1.4e+02 Score=21.54 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=43.7
Q ss_pred EEEEEECCC--cchHHHHHHHHHHHHHc------CceeeeecCCCC---------------------CCHHHHHHHHHHh
Q 031035 42 LAVVIVGGR--KDSQSYVSMKRKACAEV------GIKSFDIDLPEQ---------------------VSEAELISKVHEL 92 (167)
Q Consensus 42 Laii~vg~d--~as~~Y~~~k~k~~~~~------Gi~~~~~~l~~~---------------------~~~~el~~~I~~l 92 (167)
+.+|....+ ..+..-++...+.+++. |.+++.+.+.+. .+.+++.+.++++
T Consensus 3 ilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (191)
T 1t0i_A 3 VGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIV 82 (191)
T ss_dssp EEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHH
Confidence 444554444 33455566666666665 688877775420 0124455555666
Q ss_pred cCCCCCcEEEEeCCCCCCCCH---HHHHhcCC
Q 031035 93 NVMPDVHGILVQLPLPKHINE---EKVLGEIS 121 (167)
Q Consensus 93 N~D~~V~GIlvq~PLP~~id~---~~i~~~I~ 121 (167)
.+- |+|++..|.-.+-=. +..++.+.
T Consensus 83 ~~a---D~iI~~sP~y~~~~p~~lK~~iD~~~ 111 (191)
T 1t0i_A 83 NAL---DIIVFVTPQYNWGYPAALKNAIDRLY 111 (191)
T ss_dssp HTC---SEEEEEEECBTTBCCHHHHHHHHTCS
T ss_pred HhC---CEEEEEeceECCCCCHHHHHHHHHHH
Confidence 443 699999999754323 33445553
No 293
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=23.66 E-value=2e+02 Score=22.63 Aligned_cols=117 Identities=10% Similarity=0.043 Sum_probs=60.4
Q ss_pred HHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 27 EEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 27 ~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
+.++.+.++ +..|.+-++.+|+.+ ..|.....+.+++.| ..+.+..-.+.+++.+.+... | ++|.--
T Consensus 272 ~a~~~l~~~-~~~~~~~l~i~G~g~--~~~~~~l~~~~~~~~---~~~~~~g~~~~~~~~~~~~~a------d-v~v~ps 338 (439)
T 3fro_A 272 KAIEILSSK-KEFQEMRFIIIGKGD--PELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSV------D-FVIIPS 338 (439)
T ss_dssp HHHHHHHTS-GGGGGEEEEEECCCC--HHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTC------S-EEEECB
T ss_pred HHHHHHHhc-ccCCCeEEEEEcCCC--hhHHHHHHHHHhhcC---CEEEEcCCCCHHHHHHHHHHC------C-EEEeCC
Confidence 334445432 212677778888654 567777888888888 334445556778887777652 2 334322
Q ss_pred CCCCCCHHHHHhcCCCCCCcccCCcccHHHhhccCCCCCC--CCchHHHHHHHhh
Q 031035 107 LPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLF--LPCTPKAIILYSC 159 (167)
Q Consensus 107 LP~~id~~~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~--~PcTp~avi~lL~ 159 (167)
..+++ ...+++++.-.+=|=+-.......++.+ ..++ -|.++.+..+-+.
T Consensus 339 ~~e~~-~~~~~EAma~G~Pvi~s~~~~~~e~~~~--~~g~~~~~~d~~~la~~i~ 390 (439)
T 3fro_A 339 YFEPF-GLVALEAMCLGAIPIASAVGGLRDIITN--ETGILVKAGDPGELANAIL 390 (439)
T ss_dssp SCCSS-CHHHHHHHHTTCEEEEESSTHHHHHCCT--TTCEEECTTCHHHHHHHHH
T ss_pred CCCCc-cHHHHHHHHCCCCeEEcCCCCcceeEEc--CceEEeCCCCHHHHHHHHH
Confidence 22333 2445666554442211111123334432 1332 3457766655544
No 294
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=23.64 E-value=2.3e+02 Score=21.11 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=37.3
Q ss_pred eEEEEEECC-CcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhc-C-CCCCcEEEEe
Q 031035 41 GLAVVIVGG-RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELN-V-MPDVHGILVQ 104 (167)
Q Consensus 41 ~Laii~vg~-d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN-~-D~~V~GIlvq 104 (167)
++++|.-.. .+.+..-.+.-.+.+++.|+.+..+ ..+.+.++-.+.++++- . .+.+++|+..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~ 184 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEII--QGDFTEPSGYAAAKKILSQPQTEPVDVFAF 184 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEE--ECCSSHHHHHHHHHHHTTSCCCSSEEEEES
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEE--eCCCChhHHHHHHHHHHhcCCCCCcEEEEc
Confidence 455544221 2333444456667889999987622 33445666666666654 3 5789999974
No 295
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens}
Probab=23.63 E-value=2.5e+02 Score=23.41 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCceeeeecC---CCCCCHHHHHHHHHHhcC
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDL---PEQVSEAELISKVHELNV 94 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l---~~~~~~~el~~~I~~lN~ 94 (167)
..++++..+.+++.|++...+.| |.....+.+...+++|.+
T Consensus 171 ~~fi~siv~~~~~~gfDGidiDfWE~p~~~d~~~~~~ll~eLr~ 214 (393)
T 3bxw_B 171 EELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAE 214 (393)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECGGGCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEecccccCChhhHHHHHHHHHHHHH
Confidence 57889999999999988877764 554556666666666643
No 296
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.38 E-value=2.4e+02 Score=21.54 Aligned_cols=15 Identities=0% Similarity=0.000 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 031035 18 AQTIRSEIAEEVRLL 32 (167)
Q Consensus 18 a~~i~~~lk~~v~~l 32 (167)
...+.+.++..++++
T Consensus 19 ~~~~~~g~~~a~~~i 33 (346)
T 1usg_A 19 GDMEFNGARQAIKDI 33 (346)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 334444444444444
No 297
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=23.33 E-value=2.2e+02 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=32.4
Q ss_pred CCCceEEEEEECCC-cchHHHHHHHHHHHHHcCceeeeecCC
Q 031035 37 GKVPGLAVVIVGGR-KDSQSYVSMKRKACAEVGIKSFDIDLP 77 (167)
Q Consensus 37 g~~P~Laii~vg~d-~as~~Y~~~k~k~~~~~Gi~~~~~~l~ 77 (167)
|.....+.|--|-. +.|..-+..-.+.|+++||.+..+++.
T Consensus 46 ~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 46 KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 66666666666665 667777788899999999999998885
No 298
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.10 E-value=1.8e+02 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=32.1
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
...++-+|. ...+.+++.|+.+. .++.-+.+.+++.|.++..+
T Consensus 185 ~~~~~aIG~---------~Ta~~l~~~G~~v~---va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 185 NYTAISIGN---------TTALYLQEQGIPSY---IAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp TCEEEESSH---------HHHHHHHHTTCCEE---ECSSSSHHHHHHHHHHTC--
T ss_pred CCEEEEECH---------HHHHHHHHcCCCce---eCCCCCHHHHHHHHHHHhhh
Confidence 345566774 67788999999742 48888999999999988543
No 299
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=22.72 E-value=3e+02 Score=22.07 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=48.6
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH 110 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~ 110 (167)
...++.++.......+...++...+.+++.|++++.+.+.+. ..+++.+.+.+ -++|++-.|.-.+
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~l~~------~d~iiigsP~y~~ 320 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-DRSEIVKDILE------SGAIALGAPTIYD 320 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-CHHHHHHHHHT------CSEEEEECCEETT
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHHH------CCEEEEECccccc
Confidence 346788887777777888888889999889999999998654 34445444433 3699999997543
No 300
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=22.63 E-value=1.1e+02 Score=25.74 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHH
Q 031035 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (167)
Q Consensus 10 ~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 89 (167)
+++-|+...+++.+. ++.+ | + + ++|..+..- ...|.+...+..++ |+++....++.+.+.+++.+.+
T Consensus 33 ~i~~G~g~l~~l~~~----l~~~----g-~-r-~liVtd~~~-~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~ 99 (387)
T 3uhj_A 33 KYIQRAGEIDKLAAY----LAPL----G-K-R-ALVLIDRVL-FDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVR 99 (387)
T ss_dssp EEEECTTTTTTTHHH----HGGG----C-S-E-EEEEECTTT-HHHHHHHC-------CCEEEEEECCSSCSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHH----HHHc----C-C-E-EEEEECchH-HHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHH
Confidence 456676654444333 3333 5 2 2 233334433 33477777888888 9998556677788888887777
Q ss_pred HHhcCCCCCcEEE
Q 031035 90 HELNVMPDVHGIL 102 (167)
Q Consensus 90 ~~lN~D~~V~GIl 102 (167)
+.+.+. +.|.|+
T Consensus 100 ~~~~~~-~~d~II 111 (387)
T 3uhj_A 100 KVAIEH-GSDILV 111 (387)
T ss_dssp HHHHHH-TCSEEE
T ss_pred HHHhhc-CCCEEE
Confidence 776543 356664
No 301
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=22.48 E-value=2.6e+02 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.|++.||.+..+.-..-.+ ++++++.|++++-|
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 678999999987643211112 46788888887655
No 302
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=22.43 E-value=67 Score=27.23 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHcCce-eeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 64 CAEVGIK-SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 64 ~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++..|.+ .-...+....+.+.+.+.++-+-.||+|++|+|-
T Consensus 283 i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvn 324 (395)
T 2fp4_B 283 IFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVN 324 (395)
T ss_dssp HHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEE
Confidence 3444442 2334556778899999999999999999999985
No 303
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=22.39 E-value=1.8e+02 Score=23.04 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEE
Q 031035 22 RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGI 101 (167)
Q Consensus 22 ~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 101 (167)
....+.-++.+.++.|. -++++|. .+++.+....+.-.+.+++.|+.+........ ...++...+.++.+ .+.+.|
T Consensus 127 ~~~~~~~~~~l~~~~g~-~~iaii~-~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~-~~~d~~~~~~~l~~-~~~dav 202 (392)
T 3lkb_A 127 SEQVVALLEYIAREKKG-AKVALVV-HPSPFGRAPVEDARKAARELGLQIVDVQEVGS-GNLDNTALLKRFEQ-AGVEYV 202 (392)
T ss_dssp HHHHHHHHHHHHHHCTT-CEEEEEE-CSSHHHHTTHHHHHHHHHHHTCEEEEEEECCT-TCCCCHHHHHHHHH-TTCCEE
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEEE-eCCchhhhHHHHHHHHHHHcCCeEEEEEeeCC-CCcCHHHHHHHHHh-cCCCEE
Q ss_pred EE
Q 031035 102 LV 103 (167)
Q Consensus 102 lv 103 (167)
++
T Consensus 203 ~~ 204 (392)
T 3lkb_A 203 VH 204 (392)
T ss_dssp EE
T ss_pred EE
No 304
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=21.98 E-value=1.9e+02 Score=19.41 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=41.5
Q ss_pred CceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 39 VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 39 ~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
+|.|..+-...-+..........+..++.++.+..+.+.++.+.+++.+.+++.
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~ 84 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTY 84 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTC
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHc
Confidence 677777777767888888888888888888888888776566777777777665
No 305
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=21.95 E-value=2.3e+02 Score=24.66 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=34.1
Q ss_pred ceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 40 PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 40 P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
++++|+-.|+. |.....++.+++|+.++.+.+ +.+.+++ +.+ +.+||++-
T Consensus 8 ~~IlIlD~g~~-----~~~~i~r~lr~~G~~~~i~p~--~~~~~~i----~~~----~~dgiILs 57 (525)
T 1gpm_A 8 HRILILDFGSQ-----YTQLVARRVRELGVYCELWAW--DVTEAQI----RDF----NPSGIILS 57 (525)
T ss_dssp SEEEEEECSCT-----THHHHHHHHHHTTCEEEEEES--CCCHHHH----HHH----CCSEEEEC
T ss_pred CEEEEEECCCc-----cHHHHHHHHHHCCCEEEEEEC--CCCHHHH----hcc----CCCEEEEC
Confidence 56777766642 556777888999999988764 3444444 333 36899984
No 306
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=21.93 E-value=38 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=10.5
Q ss_pred CceeeeecCCCCCCHHHHHHHHHHh
Q 031035 68 GIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 68 Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
+..+-.+.+|+..+ + -+.|+++
T Consensus 75 ~~qlv~~ilp~~~~--~-Y~~iK~~ 96 (139)
T 4g0o_A 75 GLQLLIVILPDVTG--S-YGKIKRI 96 (139)
T ss_dssp TCSEEEEECCSSSS--C-HHHHHCC
T ss_pred CCcEEEEEECCCCC--c-HHHHHHH
Confidence 44555555555432 2 4555544
No 307
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=21.90 E-value=84 Score=21.34 Aligned_cols=38 Identities=13% Similarity=-0.047 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHh
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHEL 92 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~l 92 (167)
.|-+..++..++.||+++.+.+.+ ..+.+++.+.++++
T Consensus 11 ~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~ 49 (114)
T 1rw1_A 11 DTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEH 49 (114)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhC
Confidence 455556666666666666666542 23445555555443
No 308
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.79 E-value=1.2e+02 Score=22.15 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=39.0
Q ss_pred CceEEEEEECCCc------chHHHHHHHHHH----HHHcCceeeeec-CCCCCCHHHHHHHHHHhcCCCCCcEEEEeC
Q 031035 39 VPGLAVVIVGGRK------DSQSYVSMKRKA----CAEVGIKSFDID-LPEQVSEAELISKVHELNVMPDVHGILVQL 105 (167)
Q Consensus 39 ~P~Laii~vg~d~------as~~Y~~~k~k~----~~~~Gi~~~~~~-l~~~~~~~el~~~I~~lN~D~~V~GIlvq~ 105 (167)
.|+.+||.+||.. +++.|. ..+. .++.|++...+. +|+ +.+++.+.++++-++. .|=|+.-=
T Consensus 5 ~~~v~Ii~~GdEl~~G~i~D~n~~~--l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~-~DlVittG 77 (167)
T 2g2c_A 5 HIKSAIIVVSDRISTGTRENKALPL--LQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQG-ARFIITAG 77 (167)
T ss_dssp EEEEEEEEECHHHHHTSSCCCHHHH--HHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTT-CSEEEEES
T ss_pred ccEEEEEEECCcccCCceeccHHHH--HHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCC-CCEEEECC
Confidence 4788888888643 455553 5566 788899876544 454 5678888888875432 67777754
No 309
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.76 E-value=1.1e+02 Score=24.84 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=53.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++-|..-|...+.+-|.+..+ +.|+ --.+...++-...-..+...+.-+.-.++...+++| +.++++.++
T Consensus 31 avilvg~dpaS~~Yv~~k~k~~~---~~Gi---~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~ 104 (276)
T 3ngx_A 31 KLIQIGDNEAASIYARAKIRRGK---KIGI---AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIV 104 (276)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHH---HHTC---EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HCCe---EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHH
Confidence 34555655555555444443322 2287 334455555555566667777777778888887775 889988777
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|.- +++|||+
T Consensus 105 ~~I~p---~KDVDG~ 116 (276)
T 3ngx_A 105 RNIPY---YKDVDAL 116 (276)
T ss_dssp TTSCG---GGBTTCC
T ss_pred hhCCC---CCcccCC
Confidence 66644 6778886
No 310
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.76 E-value=1.5e+02 Score=24.32 Aligned_cols=48 Identities=6% Similarity=-0.032 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEE
Q 031035 54 QSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGIL 102 (167)
Q Consensus 54 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 102 (167)
..|.+......++.|+++....++.+.+.+.+.+.++.+.+. +.+.|+
T Consensus 44 ~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~-~~d~II 91 (370)
T 1jq5_A 44 KIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKA-EAAIVI 91 (370)
T ss_dssp HHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHT-TCSEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhc-CCCEEE
Confidence 357777777788889987545566666766776666665433 356666
No 311
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=21.60 E-value=2.8e+02 Score=21.29 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCC--------------------CCHHH
Q 031035 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--------------------VSEAE 84 (167)
Q Consensus 25 lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~--------------------~~~~e 84 (167)
+++.+++++++ + ++.|....+..||......+ ..+.+++.|++.-.+..|-. .+.++
T Consensus 5 ~~~~~~~~~~~-~-~~~~~~~i~~g~~~~~~~~~-~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~ 81 (262)
T 1rd5_A 5 VSDTMAALMAK-G-KTAFIPYITAGDPDLATTAE-ALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDA 81 (262)
T ss_dssp HHHHHHHHHHT-T-CCEEEEEEETTSSCHHHHHH-HHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHhc-C-CceEEEEeeCCCCCHHHHHH-HHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHH
Confidence 33444445443 3 34566667777887655554 45677888999888876533 35676
Q ss_pred HHHHHHHhcCCCCC
Q 031035 85 LISKVHELNVMPDV 98 (167)
Q Consensus 85 l~~~I~~lN~D~~V 98 (167)
..+.++++.+..++
T Consensus 82 ~~~~i~~ir~~~~~ 95 (262)
T 1rd5_A 82 VLEMLREVTPELSC 95 (262)
T ss_dssp HHHHHHHHGGGCSS
T ss_pred HHHHHHHHHhcCCC
Confidence 77777777654333
No 312
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.55 E-value=49 Score=20.78 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=28.6
Q ss_pred cCCcccHHHhhccCCCCCCCCchHHHHHHHhhhccC
Q 031035 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIILYSCLINC 163 (167)
Q Consensus 128 Gl~~~NlG~l~~g~~~~~~~PcTp~avi~lL~~~~~ 163 (167)
|+++.-+.+.+.| .+.+-|-|..-|.+.++.+|.
T Consensus 20 GVS~sTVSr~ln~--~~~vs~~t~~rV~~~a~~lgY 53 (67)
T 2l8n_A 20 KVSTATVSRALMN--PDKVSQATRNRVEKAAREVGY 53 (67)
T ss_dssp TCCHHHHHHTTTC--CCCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhCC
Confidence 7888888888887 566778899999999998886
No 313
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.49 E-value=39 Score=17.96 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 031035 16 AVAQTIRSEIAEEVRLLSEKYG 37 (167)
Q Consensus 16 ~la~~i~~~lk~~v~~l~~~~g 37 (167)
+++++|++++..-++++++..+
T Consensus 1 P~~e~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 1 PLVEDMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp CHHHHTTTHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHc
Confidence 3577888888888888776543
No 314
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=21.40 E-value=1.4e+02 Score=23.10 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.|++.||.+....+....+ ++++.+.+++++-|
T Consensus 53 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 91 (215)
T 3da8_A 53 AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPD 91 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCC
Confidence 678999999988775432223 35667777776554
No 315
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=21.29 E-value=1.3e+02 Score=23.98 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=26.2
Q ss_pred EEECCCcchHHH-HHHHHHHHHHcCceeeeecCCCCCCHHH
Q 031035 45 VIVGGRKDSQSY-VSMKRKACAEVGIKSFDIDLPEQVSEAE 84 (167)
Q Consensus 45 i~vg~d~as~~Y-~~~k~k~~~~~Gi~~~~~~l~~~~~~~e 84 (167)
|+||-.|..... .+...+.+++-|++.+.++|.+-....+
T Consensus 13 ikVG~~~~p~~~il~~v~~~~~k~Gi~veiv~F~Dy~~pN~ 53 (252)
T 4ib2_A 13 IKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNE 53 (252)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHHTTCEEEEEECSSSSHHHH
T ss_pred EEEEEcCCChHHHHHHHHHHHHhcCCeEEEEEecChhhHHH
Confidence 566655433222 2335677888999999999987665443
No 316
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=21.26 E-value=2.4e+02 Score=22.00 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHcCceeeeecC-CCCCCHHHHH------HHHHHhcCCCCCcEEEEeCCC
Q 031035 52 DSQSYVSMKRKACAEVGIKSFDIDL-PEQVSEAELI------SKVHELNVMPDVHGILVQLPL 107 (167)
Q Consensus 52 as~~Y~~~k~k~~~~~Gi~~~~~~l-~~~~~~~el~------~~I~~lN~D~~V~GIlvq~PL 107 (167)
.+..+.+...+.|+++|..+-.+.. +...+++... +.+-+.-++-.|.+.+...|.
T Consensus 105 ~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~ 167 (303)
T 3l23_A 105 KIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNH 167 (303)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccC
Confidence 4567889999999999999887753 2333444333 333334445566633443343
No 317
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.19 E-value=3.3e+02 Score=21.96 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHcCceeeeecCCCCCC---HHHHHHHHHHhcCC
Q 031035 62 KACAEVGIKSFDIDLPEQVS---EAELISKVHELNVM 95 (167)
Q Consensus 62 k~~~~~Gi~~~~~~l~~~~~---~~el~~~I~~lN~D 95 (167)
..|++.||.+..+....... ++++++.+++++-|
T Consensus 137 ~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~D 173 (292)
T 3lou_A 137 PLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAE 173 (292)
T ss_dssp HHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 45999999988654322111 35788888888655
No 318
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.17 E-value=1.8e+02 Score=19.91 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=62.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC----CC--HH
Q 031035 41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH----IN--EE 114 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~----id--~~ 114 (167)
++.|+.....-.++..++...+.+++.|++++.+.+.+... ++ +.. +-++|++-.|.-.+ +. ..
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~-~~-------l~~--~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASA-EN-------LAD--GYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCC-TT-------TTT--TCSEEEEEECEECSSSCEECHHHH
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCH-hH-------hcc--cCCEEEEEecccCCCCCCCcHHHH
Confidence 56777777777788899999999999999999998865321 11 110 45789998887542 22 23
Q ss_pred HHHhcCCCCCCcccCCcccHHHhhccCCCCCC-CCc-hHHHHHHHhhhccC
Q 031035 115 KVLGEISLEKDVDGFHPLNIGKLAMKGRDPLF-LPC-TPKAIILYSCLINC 163 (167)
Q Consensus 115 ~i~~~I~P~KDVDGl~~~NlG~l~~g~~~~~~-~Pc-Tp~avi~lL~~~~~ 163 (167)
..++.+.. .+..|.. .+-+-.|+ ..+ ..| +...+-++|+..|.
T Consensus 73 ~fl~~l~~-~~l~~k~---~~vfg~G~--~~y~~~~~a~~~l~~~l~~~G~ 117 (148)
T 3f6r_A 73 SLFEEFDR-IGLAGRK---VAAFASGD--QEYEHFCGAVPAIEERAKELGA 117 (148)
T ss_dssp HHHTTGGG-TCCTTCE---EEEEEEEC--TTSSSTTTHHHHHHHHHHHTTC
T ss_pred HHHHHhhc-cCCCCCE---EEEEEeCC--CCHHHHHHHHHHHHHHHHHcCC
Confidence 34444432 2333322 22233353 222 234 45556667777664
No 319
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=21.12 E-value=79 Score=21.86 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Q 031035 63 ACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHIN 112 (167)
Q Consensus 63 ~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~id 112 (167)
-..-.|++.... .+.+|+.+.++++-+++++.=|++..-+-+.+.
T Consensus 17 GFrLaGi~~~~v-----~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~ 61 (109)
T 2d00_A 17 GFRLAGLEGYGA-----SSAEEAQSLLETLVERGGYALVAVDEALLPDPE 61 (109)
T ss_dssp HHHHTTSEEEEC-----SSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHH
T ss_pred HHHHcCCeEEEe-----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhH
Confidence 345689965322 477899999999999999988888877776653
No 320
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.00 E-value=2.3e+02 Score=20.08 Aligned_cols=53 Identities=6% Similarity=-0.003 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEECCC-------------cchHHHHHHHHHHHHHcCceee
Q 031035 19 QTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGR-------------KDSQSYVSMKRKACAEVGIKSF 72 (167)
Q Consensus 19 ~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d-------------~as~~Y~~~k~k~~~~~Gi~~~ 72 (167)
+++++.+++-++.+++. +..+++.++..-.. ..-..|.+...+.|++.|+.+.
T Consensus 92 ~~~~~~l~~ii~~l~~~-~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~i 157 (200)
T 4h08_A 92 EEYDKSFPKLIKIIRKY-APKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVN 157 (200)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhhh-CCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEE
Confidence 44566677767777655 44444433322111 1123455666677777776554
No 321
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=20.99 E-value=1.5e+02 Score=24.40 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=54.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec--CCCCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID--LPEQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~--l~~~~~~~el~ 86 (167)
+.++-|..-|...+-+-|.+..+ +.|+. --.+...++....--.+...+.-+.-.++...++ ||+.++++.++
T Consensus 57 avIlVG~dpaS~~Yv~~K~k~c~---~vGi~--s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~ 131 (303)
T 4b4u_A 57 ATILVGDDGASATYVRMKGNACR---RVGMD--SLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACF 131 (303)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHH---HTTCE--EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHH---HcCCe--EEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHH
Confidence 34555665566555444433322 22664 3445666666666666667777777777777776 57889988877
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|.- +++|||+
T Consensus 132 ~~I~p---~KDVDG~ 143 (303)
T 4b4u_A 132 DAISL---AKDVDGV 143 (303)
T ss_dssp HHSCG---GGCTTCC
T ss_pred hccCc---ccccCcc
Confidence 77654 7789986
No 322
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.96 E-value=2.4e+02 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=10.7
Q ss_pred HHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 65 AEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 65 ~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
.+-|+++.... +.+++++.+++
T Consensus 126 rsdgvdvrtvs-----dkeelieqvrr 147 (162)
T 2l82_A 126 RSDGVDVRTVS-----DKEELIEQVRR 147 (162)
T ss_dssp CCSSCEEEEES-----SHHHHHHHHHH
T ss_pred hhcCceeeecC-----CHHHHHHHHHH
Confidence 34455544432 34556655544
No 323
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=20.93 E-value=3.1e+02 Score=25.56 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeec
Q 031035 37 GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID 75 (167)
Q Consensus 37 g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~ 75 (167)
+..|.|++|.+.....+..|-..|.+. -+.||.+..+.
T Consensus 470 ~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~ 507 (771)
T 1u04_A 470 GKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVN 507 (771)
T ss_dssp TCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEe
Confidence 456889877775555678899888885 58999887765
No 324
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=20.87 E-value=3.3e+02 Score=21.91 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCceEEEEEE-CCCcchHHHHHHHHHHHHHcCc-eeeeecCCC--CCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 37 GKVPGLAVVIV-GGRKDSQSYVSMKRKACAEVGI-KSFDIDLPE--QVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 37 g~~P~Laii~v-g~d~as~~Y~~~k~k~~~~~Gi-~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
+..|++++|-. ..+ ...|...-.+..+++|+ .++...+.. +.+.+++.+.|++ .++|++
T Consensus 54 g~~~~I~~IptAs~~--~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~------ad~I~v 116 (291)
T 3en0_A 54 GNDAIIGIIPSASRE--PLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQ------CTGIFM 116 (291)
T ss_dssp GGGCEEEEECTTCSS--HHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHH------CSEEEE
T ss_pred CCCCeEEEEeCCCCC--hHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhc------CCEEEE
Confidence 34588888854 334 35677778899999999 677777632 2344677787776 478887
No 325
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.77 E-value=2.8e+02 Score=21.04 Aligned_cols=67 Identities=4% Similarity=-0.005 Sum_probs=35.8
Q ss_pred CCCceEEEEEECC-CcchHHHHHHHHHHHHHc----CceeeeecCCCCCCHHHHHHHHHHh-cCC-CCCcEEEEe
Q 031035 37 GKVPGLAVVIVGG-RKDSQSYVSMKRKACAEV----GIKSFDIDLPEQVSEAELISKVHEL-NVM-PDVHGILVQ 104 (167)
Q Consensus 37 g~~P~Laii~vg~-d~as~~Y~~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~l-N~D-~~V~GIlvq 104 (167)
|.. ++++|.-.. .+.+..-.+.-.+.+++. |+.+....+..+.+.++..+.++++ ... +.++||+..
T Consensus 122 G~~-~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~ 195 (313)
T 3m9w_A 122 PQG-NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVAS 195 (313)
T ss_dssp SSE-EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEES
T ss_pred CCC-cEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEEC
Confidence 544 666553221 223333344556666666 6766543334444555555544443 333 789999985
No 326
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=20.75 E-value=1.9e+02 Score=22.63 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 77 PEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 77 ~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
....+.+.-.+.+++|-+++.|+||+.
T Consensus 53 D~~~~~~~~~~~~~~l~~~~~v~~iig 79 (364)
T 3lop_A 53 DDEQKIEQTVRNVRDMARVDNPVALLT 79 (364)
T ss_dssp ECTTCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 333344444555555544445555553
No 327
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=20.75 E-value=1.1e+02 Score=18.95 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHh
Q 031035 51 KDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHEL 92 (167)
Q Consensus 51 ~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 92 (167)
-+|...++...+.-+++|+......+....|-.++.+.|.+.
T Consensus 36 ~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 77 (82)
T 2ava_A 36 ADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGL 77 (82)
T ss_dssp TCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHH
Confidence 479999999999999999998888887777888888887653
No 328
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=20.75 E-value=1.6e+02 Score=23.15 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcC-----ceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 031035 56 YVSMKRKACAEVG-----IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILV 103 (167)
Q Consensus 56 Y~~~k~k~~~~~G-----i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 103 (167)
..+...-++++++ ..++++......+.+.-.+..++|-+++.|++|+-
T Consensus 25 ~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 77 (375)
T 3i09_A 25 GLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVG 77 (375)
T ss_dssp HHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEEC
Confidence 4455555555552 23444444444556666666666666556777765
No 329
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=20.72 E-value=1e+02 Score=18.94 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHH
Q 031035 52 DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE 91 (167)
Q Consensus 52 as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 91 (167)
+|...++...+.-+++|+......+....|-.++.+.|.+
T Consensus 39 DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 78 (81)
T 2lol_A 39 DSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKE 78 (81)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHH
Confidence 6888899999999999999887777777788888888765
No 330
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=20.70 E-value=2.2e+02 Score=24.11 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCceEEEEEECCCc-------------chHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEe
Q 031035 38 KVPGLAVVIVGGRK-------------DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQ 104 (167)
Q Consensus 38 ~~P~Laii~vg~d~-------------as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 104 (167)
.+|+.+||..|+.- +|+.|. .....++.|++...+..-.+ +.+++.+.|+++-++ .|=|++-
T Consensus 179 ~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~--L~~~l~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~~--~DlVitt 253 (402)
T 1uz5_A 179 RKPKVAVISTGNEIVPPGNELKPGQIYDINGRA--LCDAINELGGEGIFMGVARD-DKESLKALIEKAVNV--GDVVVIS 253 (402)
T ss_dssp CCCEEEEEEECTTEECTTSCCCTTCEECCHHHH--HHHHHHHHTSEEEEEEEECS-SHHHHHHHHHHHHHH--CSEEEEE
T ss_pred CCCEEEEEEcCccccCCCCCCCCCcEEcchHHH--HHHHHHhCCCeEEEEEEeCC-CHHHHHHHHHHHhhC--CCEEEEc
Confidence 57999999998643 567675 67778889998876554332 567888888876443 5666665
Q ss_pred C
Q 031035 105 L 105 (167)
Q Consensus 105 ~ 105 (167)
-
T Consensus 254 G 254 (402)
T 1uz5_A 254 G 254 (402)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=20.68 E-value=2.1e+02 Score=24.21 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 56 YVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 56 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
.++...+.|..-|+..-++.... ..+.+.++.+++- +|+||++..+
T Consensus 75 tI~~I~~~a~~~gyk~II~n~~~-~~~~~~i~~lkek----rvDgIIi~~~ 120 (371)
T 3qi7_A 75 AINKIVKLADDKEVQAIVVSTDQ-AGLLPALQKVKEK----RPEIITISAP 120 (371)
T ss_dssp HHHHHHGGGGCTTEEEEEEECSS-CCCHHHHHHHHHH----CTTSEEEESS
T ss_pred HHHHHHHHhhcCCCeEEEEECCC-cchHHHHHHHHhc----CCCEEEEecc
Confidence 35556666666666555554332 1223344444432 3456665543
No 332
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=20.61 E-value=2.3e+02 Score=21.83 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=41.8
Q ss_pred HHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecC---CC-----CCCHHHHHHHHHH-hcCCCCCc
Q 031035 29 VRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL---PE-----QVSEAELISKVHE-LNVMPDVH 99 (167)
Q Consensus 29 v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l---~~-----~~~~~el~~~I~~-lN~D~~V~ 99 (167)
++.++.. |. -+++++--.. ....+.-.+..++.||++....- .+ .++++++.+.+++ +...++++
T Consensus 109 ~~al~~~-g~-~rvglltpy~----~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ad 182 (240)
T 3ixl_A 109 LNGLRAL-GV-RRVALATAYI----DDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSD 182 (240)
T ss_dssp HHHHHHT-TC-SEEEEEESSC----HHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHh-CC-CEEEEEeCCh----HHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCC
Confidence 3444433 43 3566653321 22223334566678998765432 22 3567889999999 64677899
Q ss_pred EEEEe
Q 031035 100 GILVQ 104 (167)
Q Consensus 100 GIlvq 104 (167)
+|++-
T Consensus 183 aivL~ 187 (240)
T 3ixl_A 183 GILLS 187 (240)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99984
No 333
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=20.59 E-value=1.3e+02 Score=24.78 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=50.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCC--CCCCHHHHH
Q 031035 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP--EQVSEAELI 86 (167)
Q Consensus 9 ~~ildGk~la~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~ 86 (167)
+.++=|..-|...+.+-|.+.. + +.|+.- -.+...++-...--.....+.-+.-.++...+++| +.++++.++
T Consensus 41 avilvg~dpaS~~Yv~~k~k~~--~-~~Gi~~--~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~ 115 (300)
T 4a26_A 41 ASIIVGQRMDSKKYVQLKHKAA--A-EVGMAS--FNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAI 115 (300)
T ss_dssp EEEEESCCHHHHHHHHHHHHHH--H-HTTCEE--EEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHH--H-HcCCeE--EEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 3455565555555444443322 2 226643 34455555544455555555555557777777775 889998887
Q ss_pred HHHHHhcCCCCCcEE
Q 031035 87 SKVHELNVMPDVHGI 101 (167)
Q Consensus 87 ~~I~~lN~D~~V~GI 101 (167)
+.|.- +++|||+
T Consensus 116 ~~I~p---~KDVDG~ 127 (300)
T 4a26_A 116 EKIHP---HKDADAL 127 (300)
T ss_dssp HTSCG---GGCTTCC
T ss_pred hhCCc---ccccccC
Confidence 77665 7778886
No 334
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=20.29 E-value=88 Score=21.64 Aligned_cols=39 Identities=23% Similarity=0.089 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCceeeeecCCC-CCCHHHHHHHHHHhc
Q 031035 55 SYVSMKRKACAEVGIKSFDIDLPE-QVSEAELISKVHELN 93 (167)
Q Consensus 55 ~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN 93 (167)
.|-+...+..++.|++++.+.+.+ ..+.+++.+.++++.
T Consensus 15 ~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g 54 (119)
T 3f0i_A 15 SKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQLG 54 (119)
T ss_dssp HHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcC
Confidence 344555555566666655554421 234555555555553
No 335
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=20.28 E-value=2.9e+02 Score=21.02 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.0
Q ss_pred HHHHHHcCceeeeecCCCCCC----HHHHHHHHHHhcCC
Q 031035 61 RKACAEVGIKSFDIDLPEQVS----EAELISKVHELNVM 95 (167)
Q Consensus 61 ~k~~~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D 95 (167)
.+.|++.||.+....-..-.+ ++++++.+++++-|
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 81 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPD 81 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCS
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCC
Confidence 688999999987643111112 46778888877555
No 336
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=20.06 E-value=1.7e+02 Score=23.41 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCceEEEEEECCCcchHHHHHHHHHHHHHcCceeeeecCCCCCCHHHHHHHHHHhcCC
Q 031035 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVM 95 (167)
Q Consensus 38 ~~P~Laii~vg~d~as~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 95 (167)
.+.++++|.-..+-+ ++...+..+++|++++.+. +.+.+++.+.|+++.+.
T Consensus 41 ~~rG~~LIinn~~~D----~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 41 KPLGICLIIDCIGNE----TELLRDTFTSLGYEVQKFL---HLSMHGISQILGQFACM 91 (272)
T ss_dssp SSSEEEEEEESSCCC----CSHHHHHHHHHTEEEEEEE---SCBHHHHHHHHHHHHTC
T ss_pred CcceEEEEECCchHH----HHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHhc
Confidence 345788877765544 3368899999999988774 67899999999998764
No 337
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.01 E-value=1.8e+02 Score=20.13 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=36.9
Q ss_pred eEEEEEECCCcchHHHH--HHHHHHHHHcCceeeeecCCC-----CCCHHHHHHHHHHhcCCCCCcEEEEeCC
Q 031035 41 GLAVVIVGGRKDSQSYV--SMKRKACAEVGIKSFDIDLPE-----QVSEAELISKVHELNVMPDVHGILVQLP 106 (167)
Q Consensus 41 ~Laii~vg~d~as~~Y~--~~k~k~~~~~Gi~~~~~~l~~-----~~~~~el~~~I~~lN~D~~V~GIlvq~P 106 (167)
++..|..-..--+++|. +...+.|++.|++.++..-.. ..|++++. . -|+||+--.
T Consensus 4 kivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~----~------AD~VIia~d 66 (106)
T 2m1z_A 4 KIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN----I------GEVVIFAVD 66 (106)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH----H------CSEEEEEES
T ss_pred cEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh----h------CCEEEEecc
Confidence 45555555566678886 688999999999988776542 34444443 2 357777644
Done!