RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031035
         (167 letters)



>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate
           dehydrogenase/cyclohydrolase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score =  132 bits (334), Expect = 5e-41
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
              I    VA+T  +EI   V    + + G+ P L   +      ++ Y +  +K    +
Sbjct: 3   GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 62

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G +     + ++     L   + + N    V+GI+V  P+  +  ++ +   +  EKDV+
Sbjct: 63  GFRYDLRVIEDKD---FLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 119

Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKAIIL 156
           G + +    L                 IL
Sbjct: 120 GLNHVYYQNLYH--NVRYLDKENRLKSIL 146


>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
           dehydrogenase/cyclohydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 125

 Score =  116 bits (292), Expect = 7e-35
 Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 3/123 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A I++GK ++  IR+ +  +V  L E+  G  P LA++ VG R DS  Y+++K KA  E+
Sbjct: 3   AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 62

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
           GIK+  I LP   +E+E++  +  LN    VHG LVQLPL     IN E+V+  I+ EKD
Sbjct: 63  GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 122

Query: 126 VDG 128
           VDG
Sbjct: 123 VDG 125


>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate
           dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
           562]}
          Length = 121

 Score =  116 bits (291), Expect = 7e-35
 Identities = 64/120 (53%), Positives = 78/120 (65%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG
Sbjct: 2   AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLPE  SEAEL+  +  LN    + GILVQLPLP  I+  KVL  I  +KDVDG
Sbjct: 62  FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 121


>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 170

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
              +N G+LA    +  F+PCTPK  +
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCL 27


>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
           dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
           562]}
          Length = 166

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKAII 155
           FHP N+G+L    R P   PCTP+ I+
Sbjct: 1   FHPYNVGRLCQ--RAPRLRPCTPRGIV 25


>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase
          (decarboxylating) subunit 1 {Thermus thermophilus
          [TaxId: 274]}
          Length = 437

 Score = 26.3 bits (57), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 69 IKSFDIDLPEQVSEAELISKVHEL 92
          I S  IDLPE + E +++ ++  L
Sbjct: 34 ILSPPIDLPEPLPEWKVLEELRRL 57


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
           [TaxId: 10754]}
          Length = 554

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 12/66 (18%), Positives = 26/66 (39%)

Query: 5   SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
           +D    + D  AV  T++    +  +     Y K PG+  ++    K      +++ + C
Sbjct: 96  TDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIREC 155

Query: 65  AEVGIK 70
             V + 
Sbjct: 156 IGVEVH 161


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 603,560
Number of extensions: 26839
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 14
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)