BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031037
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana
GN=At3g57810 PE=2 SV=1
Length = 317
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 23 LVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGR 82
+VS V S S ++ +D+N++ G V Y + + GDGR
Sbjct: 122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTD---YSIIGIPGDGR 178
Query: 83 CLFRALVKGMALNKG-INLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDE 141
CLFR++ G L G + + +RE AD+LR V D +RRQ E + D
Sbjct: 179 CLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQETEWFVEGDFDT 234
Query: 142 SLKRYCQRIGRSDFWGGESELLVST 166
Y ++I WGGE EL +++
Sbjct: 235 ----YVRQIRDPHVWGGEPELFMAS 255
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
GN=L96 PE=3 SV=1
Length = 867
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 72 YLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYE 131
Y V V GDG CLFRA+ K + LN+ I + +DLR +V+ S + E
Sbjct: 606 YKVIPVKGDGNCLFRAVGKSLRLNQNIKYSH-------EDLRA---QVVTYLTSHKEFLE 655
Query: 132 EALISIT---------IDESLKRYCQRIGRSDFWG 157
L +T ++++RY + I + WG
Sbjct: 656 PYLEYVTESGDTTPQEYAKNVERYIKNISKPGTWG 690
>sp|Q196X6|VF232_IIV3 Putative ubiquitin thioesterase 232R OS=Invertebrate iridescent
virus 3 GN=IIV3-084L PE=3 SV=1
Length = 844
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 72 YLVQRVTGDGRCLFRALVKGMALNKGINLNSREERE 107
Y V++V+GDG CLFR++ K + +G R+ R+
Sbjct: 590 YTVKQVSGDGNCLFRSVCKSIRALRGEKFTHRQLRQ 625
>sp|A0PQ89|RLMN_MYCUA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium ulcerans (strain Agy99) GN=rlmN PE=3
SV=1
Length = 364
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 111 DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR 149
+L A +EV CD+G R+ A +T++ L RY QR
Sbjct: 77 NLLTAAREVTCDAGQTRKTLWRATDGVTVESVLMRYPQR 115
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 77 VTGDGRCLFRAL---VKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEA 133
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRFIAQIV---ASDPDFYSEA 200
Query: 134 LISITIDESLKRYCQRIGRSDFWGGESELLV 164
++ T +E YC I R D WGG E+ +
Sbjct: 201 ILGKTNEE----YCDWIKRDDTWGGAIEISI 227
>sp|B2HJP3|RLMN_MYCMM Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=rlmN PE=3 SV=1
Length = 364
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 111 DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR 149
+L A +EV CD+G R+ A +T++ L RY QR
Sbjct: 77 NLLTAAREVTCDAGQTRKTLWRATDGVTLESVLMRYPQR 115
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 77 VTGDGRCLFRAL---VKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEA 133
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPDLYSEA 195
Query: 134 LISITIDESLKRYCQRIGRSDFWGGESELLV 164
++ T +E YC I R D WGG E+ +
Sbjct: 196 ILGKTNEE----YCDWIRRDDTWGGAIEISI 222
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 77 VTGDGRCLFRAL---VKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEA 133
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPDFYSEA 200
Query: 134 LISITIDESLKRYCQRIGRSDFWGGESELLV 164
++ T E YC I R D WGG E+ +
Sbjct: 201 ILGKTNQE----YCDWIKRDDTWGGAIEISI 227
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 67 KKVERYL-VQRVTGDGRCLFRALVKGMALNKGINLNSREERED-ADDLRMAVKEVIC--- 121
K VER+L ++ ++ DG C++RA V+ +G+ L +E R+ A +R + +
Sbjct: 141 KLVERHLQIKEISSDGHCMYRA-VEHQLTERGLALGLKELRDQTAQYMRSHADDFMPFLT 199
Query: 122 --DSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESEL 162
++G + E ++YC + + WGG+ EL
Sbjct: 200 NPNTGD-----------MYTAEEFEKYCSDVADTAAWGGQLEL 231
>sp|Q73VR8|RLMN_MYCPA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=rlmN PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 112 LRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR 149
L A EV CD+G R+ AL +T++ L RY R
Sbjct: 78 LLTAASEVTCDAGQTRKTLWRALDGVTVESVLMRYPHR 115
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 73 LVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAV-KEVICDSGSERRQYE 131
L + V D CLF ++ LN + + E ++ +R + +EV D+ +QY
Sbjct: 162 LKKVVPADNSCLFTSIR--------FVLNGKVDNEGSEMMRHIIAQEVSADT----QQYN 209
Query: 132 EALISITIDESLKRYCQRIGRSDFWGGESELLV 164
+A++ +S YC I ++D WGG E+ +
Sbjct: 210 DAVLG----KSNSDYCAWIQKADSWGGAIEVSI 238
>sp|Q5M6F9|PNP_STRT2 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=pnp
PE=3 SV=1
Length = 741
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 7 TEGILEQL--RLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSP 64
T ILE+ + +A+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 65 VMKKV-----------ERYLVQRVTGDGRCLFRA 87
+ K+ E LVQ + D + RA
Sbjct: 578 TIDKIIAETGVTIDIDEEGLVQIFSSDQDAIDRA 611
>sp|Q5M1W9|PNP_STRT1 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=pnp PE=3 SV=1
Length = 741
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 7 TEGILEQL--RLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSP 64
T ILE+ + +A+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 65 VMKKV-----------ERYLVQRVTGDGRCLFRA 87
+ K+ E LVQ + D + RA
Sbjct: 578 TIDKIIAETGVTIDIDEEGLVQIFSSDQDAIDRA 611
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 77 VTGDGRCLFRAL---VKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEA 133
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPVLYSEA 195
Query: 134 LISITIDESLKRYCQRIGRSDFWGGESELLV 164
++ T ++ YC I R D WGG E+ +
Sbjct: 196 ILGKTNED----YCDWIRRDDTWGGAIEISI 222
>sp|Q03MV9|PNP_STRTD Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=pnp PE=3
SV=1
Length = 741
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 7 TEGILEQL--RLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSP 64
T ILE+ + +A+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 65 VMKKV-----------ERYLVQRVTGDGRCLFRA 87
+ K+ E LVQ + D + RA
Sbjct: 578 TIDKIIAETGVTIDIDEEGLVQIFSSDQDAIDRA 611
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 31/127 (24%)
Query: 46 DSNHLFFARIGPPLGGGSPVMKKVERYL---------VQRVTGDGRCLFRALVKGMALNK 96
DSN F + PP V+K E + V V D CLF A+ G+
Sbjct: 76 DSNESF--SLPPPQPKPKRVLKSTEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGIF--- 130
Query: 97 GINLNSREEREDADDLR-MAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDF 155
+++ DLR M KEV+ + ++ +A++ D+ K Y Q I + +
Sbjct: 131 --------KQDSVRDLREMVSKEVL----NNPVKFNDAIL----DKPNKDYAQWILKMES 174
Query: 156 WGGESEL 162
WGG E+
Sbjct: 175 WGGAIEI 181
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 73 LVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAV-KEVICDSGSERRQYE 131
L + V D CLF ++ LN + + E ++ +R + +EV D S Y
Sbjct: 151 LKKVVPADNSCLFTSI--------RFVLNGKVDNEGSEMMRHIIAQEVAADPQS----YN 198
Query: 132 EALISITIDESLKRYCQRIGRSDFWGGESELLV 164
+A++ +S YC I ++D WGG E+ +
Sbjct: 199 DAVLG----KSNAEYCAWIQKADSWGGAIEVSI 227
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 77 VTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALIS 136
V D CLF ++ + G+ + A ++R + +++ S+ Y EA++
Sbjct: 107 VPADNSCLFTSV--NYVMEGGVY-----DPACASEMRGLIAQIV---ASDPTAYSEAVLG 156
Query: 137 ITIDESLKRYCQRIGRSDFWGGESELLV 164
T +E YC I R D WGG E+ +
Sbjct: 157 KTNEE----YCTWIRRDDTWGGAIEVSI 180
>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain
M41) GN=1a PE=1 SV=1
Length = 3953
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 25 SSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCL 84
SS VA+I++ N +F ++ + + + PP G V KVE + + + R +
Sbjct: 3711 SSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGDKVEVVYLYFIK-NTRSI 3769
Query: 85 FRALVKGMALNKGINLNSREEREDAD 110
R +V G N + + E E+ D
Sbjct: 3770 VRGMVLGAISNVVVLQSKGHETEEVD 3795
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus
(strain M41) GN=rep PE=1 SV=1
Length = 6631
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 25 SSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCL 84
SS VA+I++ N +F ++ + + + PP G V KVE + + + R +
Sbjct: 3711 SSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGDKVEVVYLYFIK-NTRSI 3769
Query: 85 FRALVKGMALNKGINLNSREEREDAD 110
R +V G N + + E E+ D
Sbjct: 3770 VRGMVLGAISNVVVLQSKGHETEEVD 3795
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 21/96 (21%)
Query: 73 LVQRVT-GDGRCLFRAL---VKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERR 128
+V+RV D CLF ++ V+G + L ++R + E++ S++
Sbjct: 105 IVRRVVPADNSCLFTSIYYVVEGGVYDPACAL----------EMRSLIAEIV---ASDQS 151
Query: 129 QYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 164
Y +A++ +S + YC I R D WGG E+ +
Sbjct: 152 AYCDAVLG----KSNEEYCSWIRREDTWGGAIEVSI 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,694,658
Number of Sequences: 539616
Number of extensions: 2523217
Number of successful extensions: 5653
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5644
Number of HSP's gapped (non-prelim): 26
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)