Query 031037
Match_columns 167
No_of_seqs 131 out of 587
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.9 2E-25 7E-30 180.4 5.6 87 62-166 46-135 (185)
2 3by4_A OTU1, ubiquitin thioest 99.9 3.1E-25 1.1E-29 182.1 6.5 79 70-166 18-96 (212)
3 3phx_A RNA-directed RNA polyme 99.9 3.1E-23 1.1E-27 167.3 6.1 89 64-166 23-111 (185)
4 3phu_A RNA-directed RNA polyme 99.9 1E-22 3.4E-27 168.6 5.5 88 65-166 24-111 (219)
5 1tff_A Ubiquitin thiolesterase 99.5 2.8E-14 9.4E-19 118.5 7.6 52 109-166 132-184 (234)
6 4ddg_A Ubiquitin-conjugating e 99.2 9.8E-12 3.3E-16 109.7 7.5 52 109-166 300-352 (399)
7 4dhi_B Ubiquitin thioesterase 99.2 1.6E-11 5.6E-16 104.9 6.6 52 109-166 170-222 (284)
8 2zfy_A Ubiquitin thioesterase 99.1 6.8E-11 2.3E-15 97.9 4.8 71 79-166 116-187 (234)
9 2zfy_A Ubiquitin thioesterase 96.4 0.0015 5E-08 53.7 2.5 22 73-94 44-65 (234)
10 3dkb_A Tumor necrosis factor, 92.1 0.15 5.3E-06 45.0 4.7 41 72-122 112-152 (390)
11 3zrh_A Ubiquitin thioesterase 84.8 0.46 1.6E-05 42.7 2.6 40 72-121 189-228 (454)
12 2jn4_A Hypothetical protein FI 23.9 11 0.00037 26.7 -0.9 17 147-163 46-62 (87)
13 2hl7_A Cytochrome C-type bioge 20.6 1.5E+02 0.0051 20.4 4.4 49 84-134 19-69 (84)
14 2kw0_A CCMH protein; oxidoredu 20.5 1.5E+02 0.0051 20.7 4.5 49 84-134 16-66 (90)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.91 E-value=2e-25 Score=180.45 Aligned_cols=87 Identities=17% Similarity=0.365 Sum_probs=56.2
Q ss_pred Chhhhhhc---cCeEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHhhhcc
Q 031037 62 GSPVMKKV---ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISIT 138 (167)
Q Consensus 62 ~~~~~kk~---~gl~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~fi~~~ 138 (167)
|...++.+ .||.+++||+|||||||||++||+..+ ..+.+||+.+++||+ .+++++++|
T Consensus 46 e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~----------~~h~~LR~~vv~yi~----~n~d~f~~F---- 107 (185)
T 3pfy_A 46 EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQ----------DMHEVVRKHCMDYLM----KNADYFSNY---- 107 (185)
T ss_dssp HHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCG----------GGHHHHHHHHHHHHH----HTHHHHTTC----
T ss_pred HHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCc----------hHHHHHHHHHHHHHH----HHHHHHHHH----
Confidence 33344544 699999999999999999999999531 258899999999997 344555666
Q ss_pred ccchHHHHHHHhcCCCccccHHHHhhcc
Q 031037 139 IDESLKRYCQRIGRSDFWGGESELLVST 166 (167)
Q Consensus 139 ~e~~fd~Yc~~m~~~~~WGGeiEL~ALS 166 (167)
++++|++||++|+++++|||++||+|||
T Consensus 108 v~~~~e~Y~~~m~~~~~WGg~iEL~AlS 135 (185)
T 3pfy_A 108 VTEDFTTYINRKRKNNCHGNHIEMQAMA 135 (185)
T ss_dssp C-----------------CCHHHHHHHH
T ss_pred HhccHHHHHHHhhCCCccchHHHHHHHH
Confidence 3678999999999999999999999998
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.91 E-value=3.1e-25 Score=182.06 Aligned_cols=79 Identities=28% Similarity=0.546 Sum_probs=68.3
Q ss_pred cCeEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHhhhccccchHHHHHHH
Q 031037 70 ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR 149 (167)
Q Consensus 70 ~gl~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd~Yc~~ 149 (167)
.+|.+++||+|||||||||++|| ... ..+.+||+.+++||+ .+++.|.++| .+++|++||++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~~----------~~~~~lR~~vv~yi~---~n~d~f~e~~----~~~~~e~Y~~~ 79 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FKQ----------DSVRDLREMVSKEVL---NNPVKFNDAI----LDKPNKDYAQW 79 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HSS----------CCSHHHHHHHHHHHH---HCTTTTCHHH----HTSCHHHHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CCc----------hHHHHHHHHHHHHHH---HCHHHHhhhh----cCCCHHHHHHH
Confidence 47999999999999999999999 531 137799999999997 3455555777 47899999999
Q ss_pred hcCCCccccHHHHhhcc
Q 031037 150 IGRSDFWGGESELLVST 166 (167)
Q Consensus 150 m~~~~~WGGeiEL~ALS 166 (167)
|+++++|||+|||+|||
T Consensus 80 m~~~~~WGg~iEL~Als 96 (212)
T 3by4_A 80 ILKMESWGGAIEIGIIS 96 (212)
T ss_dssp TTSTTSCCCHHHHHHHH
T ss_pred hcCCCEEccHHHHHHHH
Confidence 99999999999999997
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.88 E-value=3.1e-23 Score=167.27 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=70.2
Q ss_pred hhhhhccCeEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHhhhccccchH
Q 031037 64 PVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESL 143 (167)
Q Consensus 64 ~~~kk~~gl~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~f 143 (167)
|.+....+|.+++||||||||||||++||.... .. ..++..+.+||+.+++||++ +++. ++ .+++|
T Consensus 23 p~~~~~~~~~v~rv~gDGnCLFrAva~qL~~~~--~~--~~~~~~~~~LR~~~~~yi~~----~~~~--~~----~~~~~ 88 (185)
T 3phx_A 23 PRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--TD--HSYHYIKRLTESAARKYYQE----EPEA--RL----VGLSL 88 (185)
T ss_dssp CCCBHHHHEEEECCCSSTTHHHHHHHHHHSTTC--CT--TTHHHHHHHHHHHHHHHGGG----CTTH--HH----HCCCH
T ss_pred CCcccccCeEEEccCCCCchHHHHHHHHHhCCC--cc--chhhhHHHHHHHHHHHHHHh----ChHh--hh----cCCCH
Confidence 444445679999999999999999999998531 11 11223489999999999973 3333 33 47899
Q ss_pred HHHHHHhcCCCccccHHHHhhcc
Q 031037 144 KRYCQRIGRSDFWGGESELLVST 166 (167)
Q Consensus 144 d~Yc~~m~~~~~WGGeiEL~ALS 166 (167)
++||++|+++++|||++||+|||
T Consensus 89 ~~Y~~~m~~~~~WGg~iEL~Als 111 (185)
T 3phx_A 89 EDYLKRMLSDNEWGSTLEASMLA 111 (185)
T ss_dssp HHHHHHHTSTTCCCBHHHHHHHH
T ss_pred HHHHHHhhCCCccCcHHHHHHHH
Confidence 99999999999999999999997
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.86 E-value=1e-22 Score=168.56 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=69.4
Q ss_pred hhhhccCeEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHhhhccccchHH
Q 031037 65 VMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLK 144 (167)
Q Consensus 65 ~~kk~~gl~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd 144 (167)
.+....+|.|++||||||||||||++||.... . + ...+..+.+||+.+++||++ +++. ++ ++++|+
T Consensus 24 ~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~-~-~~~~~~h~~LR~~va~yi~~----n~d~--~~----~~~~fe 89 (219)
T 3phu_A 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--T-D-HSYHYIKRLTESAARKYYQE----EPEA--RL----VGLSLE 89 (219)
T ss_dssp CCBHHHHEEEECCCCSSCHHHHHHHHHHCTTC--C-T-TTHHHHHHHHHHHHHHHGGG----CHHH--HH----HCCCHH
T ss_pred CcccccceEEEccCCCCchHHHHHHHHHhCCC--c-c-chhhhHHHHHHHHHHHHHHh----Chhh--hh----cCCCHH
Confidence 34444569999999999999999999998531 1 0 11223489999999999973 3333 33 478999
Q ss_pred HHHHHhcCCCccccHHHHhhcc
Q 031037 145 RYCQRIGRSDFWGGESELLVST 166 (167)
Q Consensus 145 ~Yc~~m~~~~~WGGeiEL~ALS 166 (167)
+||++|+++++|||++||+|||
T Consensus 90 eY~~~m~~~g~WGG~iEL~AlS 111 (219)
T 3phu_A 90 DYLKRMLSDNEWGSTLEASMLA 111 (219)
T ss_dssp HHHHHHHSTTCCCCHHHHHHHH
T ss_pred HHHHHhcCCCccCCHHHHHHHH
Confidence 9999999999999999999997
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.50 E-value=2.8e-14 Score=118.48 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHhhhccccchHHHHHH-HhcCCCccccHHHHhhcc
Q 031037 109 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVST 166 (167)
Q Consensus 109 a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd~Yc~-~m~~~~~WGGeiEL~ALS 166 (167)
...||..++.||+ .+.+++++|+. .+.+|++||+ .|+.+++||||+||+|||
T Consensus 132 v~~lR~lta~~i~----~~~d~f~pFi~--~~~~~~~yC~~~ve~~~~~~~~iei~ALa 184 (234)
T 1tff_A 132 VQFLRLLTSAFIR----NRADFFRHFID--EEMDIKDFCTHEVEPMATECDHIQITALS 184 (234)
T ss_dssp HHHHHHHHHHHHH----HTHHHHGGGSC--TTSCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCHHHHhhhhc--CCCCHHHHHHHHhhhhhcccccHHHHHHH
Confidence 4578999999997 45566666752 2348999999 899999999999999997
No 6
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.24 E-value=9.8e-12 Score=109.72 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHhhhccccchHHHHHH-HhcCCCccccHHHHhhcc
Q 031037 109 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVST 166 (167)
Q Consensus 109 a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd~Yc~-~m~~~~~WGGeiEL~ALS 166 (167)
...||..++.||+ .|.+++++|+. .+.++++||+ .|...++||||+||.|||
T Consensus 300 v~~lRllts~~i~----~~~d~f~pFi~--~~~~v~~yc~~~ve~~~~e~d~l~I~ALa 352 (399)
T 4ddg_A 300 VVYLRLLTSGYLQ----RESKFFEHFIE--GGRTVKEFCQQEVEPMCKESDHIHIIALA 352 (399)
T ss_dssp HHHHHHHHHHHHH----HTHHHHGGGSS--SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCHHHHhcccC--CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence 4568889999997 45566666652 2358999999 999999999999999997
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.20 E-value=1.6e-11 Score=104.91 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHhhhccccchHHHHHH-HhcCCCccccHHHHhhcc
Q 031037 109 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVST 166 (167)
Q Consensus 109 a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd~Yc~-~m~~~~~WGGeiEL~ALS 166 (167)
...||..++.||+ .|.+++++|+. .+.++++||+ +|+.+++||||+||+|||
T Consensus 170 v~~LRllts~yi~----~~~d~f~pFi~--~~~~v~~yC~~eVe~~~~e~d~leI~ALa 222 (284)
T 4dhi_B 170 LMFFRLITSAFLK----QNSEEYAPFID--EGMTVAQYCEQEIEPMWKDADHLAINSLI 222 (284)
T ss_dssp HHHHHHHHHHHHH----HTHHHHGGGSC--TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCHHHHHhhcC--CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence 4578889999997 45556666642 2368999999 899999999999999997
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.08 E-value=6.8e-11 Score=97.89 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHhhhccccchHHHHHH-HhcCCCccc
Q 031037 79 GDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWG 157 (167)
Q Consensus 79 gDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~fi~~~~e~~fd~Yc~-~m~~~~~WG 157 (167)
.||+||++++.+|+... .....||..++.||+ .+++++++|+. .+.+|++||+ .|..+++||
T Consensus 116 ~~~~~L~~~fndq~~s~-----------~~v~~lR~lta~yi~----~~~d~f~pFi~--~~~~~e~yc~~~ve~~~~~~ 178 (234)
T 2zfy_A 116 TSVADLLASFNDQSTSD-----------YLVVYLRLLTSGYLQ----RESKFFEHFIE--GGRTVKEFCQQEVEPMCKES 178 (234)
T ss_dssp CCHHHHHHHHTSHHHHH-----------HHHHHHHHHHHHHHH----HTHHHHGGGCC--SSCCHHHHHHHHTSSTTCCC
T ss_pred CCHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHH----HCHHHHhcccC--CCCCHHHHHHHHhhhHhhcC
Confidence 39999999999998632 247799999999997 45566677752 2359999997 699999999
Q ss_pred cHHHHhhcc
Q 031037 158 GESELLVST 166 (167)
Q Consensus 158 GeiEL~ALS 166 (167)
||+||+|||
T Consensus 179 ~~i~i~ALa 187 (234)
T 2zfy_A 179 DHIHIIALA 187 (234)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999997
No 9
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.37 E-value=0.0015 Score=53.72 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEecCCCchhhHHHHHhHHh
Q 031037 73 LVQRVTGDGRCLFRALVKGMAL 94 (167)
Q Consensus 73 ~i~eIpgDGnCLFRAIadQL~~ 94 (167)
.+++|.|||||.|||++.++..
T Consensus 44 ~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHHH
Confidence 5789999999999999998864
No 10
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=92.09 E-value=0.15 Score=44.99 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=29.1
Q ss_pred eEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHHh
Q 031037 72 YLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICD 122 (167)
Q Consensus 72 l~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~~ 122 (167)
|-.....||||||.+|++-.|++.... .--||+...+.|..
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~Dr----------dlvLRkaL~~~L~~ 152 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQDT----------DLVLRKALFSTLKE 152 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCST----------TCHHHHHHHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCCH----------hHHHHHHHHHHHHh
Confidence 334456899999999999999954322 23677777777753
No 11
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=84.84 E-value=0.46 Score=42.71 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEecCCCchhhHHHHHhHHhccCCCCCcchhhhhHHHHHHHHHHHHH
Q 031037 72 YLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVIC 121 (167)
Q Consensus 72 l~i~eIpgDGnCLFRAIadQL~~~~g~~~~~~~~~~~a~~LR~~vad~i~ 121 (167)
|--....||||||-+|++-.|++ .+- ..--||+...+.|.
T Consensus 189 L~pL~t~GDGNCLLHAvSqamWG---V~D-------rdlvLRkaL~~~L~ 228 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATWG---IYD-------KDSVLRKALHDSLH 228 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTTS---SCC-------GGGHHHHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhhc---ccC-------CcHHHHHHHHHHHH
Confidence 33446689999999999999994 332 12366776666664
No 12
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=23.90 E-value=11 Score=26.73 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=12.7
Q ss_pred HHHhcCCCccccHHHHh
Q 031037 147 CQRIGRSDFWGGESELL 163 (167)
Q Consensus 147 c~~m~~~~~WGGeiEL~ 163 (167)
+-.|.+++.|||.+.|.
T Consensus 46 VVs~E~~~~WGG~vtLa 62 (87)
T 2jn4_A 46 IVEMENPALWGGKVTLA 62 (87)
T ss_dssp EEEESSSSSCSSEEEET
T ss_pred eeeeecccccCcEEEEC
Confidence 34456999999988763
No 13
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=20.63 E-value=1.5e+02 Score=20.39 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=30.6
Q ss_pred hhHHHHHhHHh--ccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHh
Q 031037 84 LFRALVKGMAL--NKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEAL 134 (167)
Q Consensus 84 LFRAIadQL~~--~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~f 134 (167)
.|+.|+++|.- .++.++. +....-+.+||..|.+.|..- +..++..++|
T Consensus 19 r~~~l~~~LRCp~Cqnqsi~-dSna~iA~dlR~~V~~~l~~G-~sd~eI~~~~ 69 (84)
T 2hl7_A 19 RFRNLTQELRCPKCQNQDIA-DSNAPIAADLRKQIYGQLQQG-KSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHEECTTSSSCBTT-TCCSHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCCchh-hcCcHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 47888888874 2343432 112245889999999999743 3445555555
No 14
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=20.49 E-value=1.5e+02 Score=20.74 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred hhHHHHHhHHh--ccCCCCCcchhhhhHHHHHHHHHHHHHhhcccchhhHHHh
Q 031037 84 LFRALVKGMAL--NKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEAL 134 (167)
Q Consensus 84 LFRAIadQL~~--~~g~~~~~~~~~~~a~~LR~~vad~i~~~~~~~~~~~e~f 134 (167)
.|+.|+.+|.- .++.++. +....-+.+||..|.+.|..- +..++..++|
T Consensus 16 r~~~L~~~LRCpvCqnqsI~-dSnA~iA~dlR~~Vre~l~~G-~Sd~eI~~~m 66 (90)
T 2kw0_A 16 QFRQLTEELRCPKCQNNSIA-DSNSMIATDLRQKVYELMQEG-KSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHSSBCSCTTSCTTT-SCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCCchh-hcCcHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 47788888864 2344442 112235889999999999743 3445555666
Done!