Query 031038
Match_columns 167
No_of_seqs 137 out of 1342
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1187 Serine/threonine prote 99.1 2.6E-10 5.5E-15 89.3 6.6 62 105-166 61-124 (361)
2 KOG1094 Discoidin domain recep 98.9 4.9E-08 1.1E-12 79.2 12.4 57 110-166 531-588 (807)
3 KOG2052 Activin A type IB rece 98.8 1.3E-08 2.8E-13 79.9 6.2 39 123-165 217-255 (513)
4 KOG0196 Tyrosine kinase, EPH ( 98.6 7E-08 1.5E-12 80.5 6.1 43 123-165 635-682 (996)
5 KOG3653 Transforming growth fa 98.6 2.1E-07 4.4E-12 73.7 6.9 37 123-163 216-252 (534)
6 KOG1026 Nerve growth factor re 98.4 1.5E-07 3.4E-12 78.7 3.7 56 106-166 480-542 (774)
7 KOG1025 Epidermal growth facto 98.4 6.2E-07 1.3E-11 75.5 5.1 42 123-164 702-749 (1177)
8 PLN00113 leucine-rich repeat r 98.1 2.2E-05 4.9E-10 68.8 9.5 43 109-152 683-726 (968)
9 PF01102 Glycophorin_A: Glycop 98.0 3.2E-06 7E-11 55.8 2.7 36 3-38 60-95 (122)
10 KOG0193 Serine/threonine prote 98.0 3.3E-05 7.2E-10 63.2 8.5 41 123-165 398-440 (678)
11 PF02439 Adeno_E3_CR2: Adenovi 97.8 4.6E-05 1E-09 39.2 3.3 30 8-37 4-34 (38)
12 PF04478 Mid2: Mid2 like cell 97.5 3.3E-05 7.3E-10 52.5 1.1 33 6-38 48-80 (154)
13 KOG1024 Receptor-like protein 97.4 0.00022 4.8E-09 56.1 4.8 42 123-164 290-338 (563)
14 KOG1095 Protein tyrosine kinas 97.4 0.00024 5.3E-09 61.9 4.8 46 120-165 695-747 (1025)
15 KOG0197 Tyrosine kinases [Sign 97.2 0.00031 6.6E-09 56.5 3.6 46 120-166 209-254 (468)
16 KOG1006 Mitogen-activated prot 97.2 0.0004 8.6E-09 52.1 3.6 59 103-166 55-115 (361)
17 PLN03224 probable serine/threo 97.2 0.00042 9.2E-09 56.8 4.1 44 119-162 145-207 (507)
18 PF08693 SKG6: Transmembrane a 97.2 0.00013 2.8E-09 38.2 0.7 30 5-34 8-37 (40)
19 PTZ00382 Variant-specific surf 97.1 0.00022 4.8E-09 45.3 1.5 29 2-30 61-89 (96)
20 KOG0192 Tyrosine kinase specif 97.1 0.0011 2.4E-08 52.2 5.6 42 123-165 47-91 (362)
21 KOG0199 ACK and related non-re 97.1 0.0014 3.1E-08 55.2 6.1 52 109-165 107-163 (1039)
22 KOG0194 Protein tyrosine kinas 97.1 0.00075 1.6E-08 54.7 4.2 44 123-166 163-214 (474)
23 KOG0595 Serine/threonine-prote 97.0 0.00094 2E-08 52.5 4.0 42 124-165 17-61 (429)
24 cd06624 STKc_ASK Catalytic dom 97.0 0.00086 1.9E-08 49.8 3.6 44 123-166 14-58 (268)
25 PLN00034 mitogen-activated pro 96.8 0.027 5.8E-07 43.9 11.0 43 123-165 80-124 (353)
26 PHA02988 hypothetical protein; 96.7 0.0021 4.5E-08 48.5 4.0 57 105-165 11-70 (283)
27 KOG0658 Glycogen synthase kina 96.6 0.0025 5.4E-08 49.4 3.9 34 123-156 30-64 (364)
28 KOG0575 Polo-like serine/threo 96.6 0.0029 6.3E-08 52.0 4.5 45 123-167 24-72 (592)
29 PF02439 Adeno_E3_CR2: Adenovi 96.6 0.0025 5.3E-08 32.9 2.5 32 6-37 6-37 (38)
30 PF01034 Syndecan: Syndecan do 96.6 0.00064 1.4E-08 39.3 0.4 33 6-38 8-40 (64)
31 PTZ00284 protein kinase; Provi 96.4 0.019 4.1E-07 46.6 7.8 35 117-151 127-164 (467)
32 KOG0580 Serine/threonine prote 96.4 0.0034 7.3E-08 46.4 3.0 54 108-166 18-75 (281)
33 PRK09188 serine/threonine prot 96.3 0.0065 1.4E-07 47.9 4.5 44 123-166 24-74 (365)
34 PF13908 Shisa: Wnt and FGF in 96.3 0.014 2.9E-07 41.5 5.5 13 7-19 79-91 (179)
35 PF15102 TMEM154: TMEM154 prot 96.2 0.0085 1.8E-07 40.7 3.9 14 103-116 119-132 (146)
36 cd05148 PTKc_Srm_Brk Catalytic 96.2 0.0089 1.9E-07 44.1 4.5 42 124-165 13-54 (261)
37 KOG0201 Serine/threonine prote 96.2 0.0081 1.7E-07 47.9 4.3 42 123-164 19-62 (467)
38 cd05104 PTKc_Kit Catalytic dom 96.1 0.011 2.5E-07 46.5 4.9 43 123-165 41-90 (375)
39 cd05103 PTKc_VEGFR2 Catalytic 96.0 0.011 2.4E-07 45.8 4.6 43 123-165 13-62 (343)
40 KOG4236 Serine/threonine prote 96.0 0.014 3.1E-07 47.9 5.0 43 123-165 570-615 (888)
41 cd05105 PTKc_PDGFR_alpha Catal 96.0 0.013 2.9E-07 46.7 4.8 43 123-165 43-92 (400)
42 TIGR01982 UbiB 2-polyprenylphe 95.9 0.019 4E-07 46.5 5.6 30 123-152 123-152 (437)
43 cd06646 STKc_MAP4K5 Catalytic 95.9 0.017 3.7E-07 42.7 5.1 43 123-165 15-58 (267)
44 cd05108 PTKc_EGFR Catalytic do 95.9 0.011 2.4E-07 45.2 4.1 42 124-165 14-61 (316)
45 cd05102 PTKc_VEGFR3 Catalytic 95.9 0.007 1.5E-07 46.7 3.0 43 123-165 13-62 (338)
46 KOG4257 Focal adhesion tyrosin 95.9 0.0092 2E-07 49.9 3.7 44 121-164 393-442 (974)
47 KOG0581 Mitogen-activated prot 95.8 0.027 5.9E-07 43.9 5.8 54 108-166 75-130 (364)
48 cd05107 PTKc_PDGFR_beta Cataly 95.8 0.019 4E-07 45.9 5.1 43 123-165 43-92 (401)
49 PF05393 Hum_adeno_E3A: Human 95.8 0.013 2.8E-07 36.0 3.2 36 7-42 30-65 (94)
50 PF10577 UPF0560: Uncharacteri 95.8 0.01 2.2E-07 50.5 3.4 32 8-39 274-305 (807)
51 PF07213 DAP10: DAP10 membrane 95.8 0.011 2.4E-07 35.7 2.7 35 4-38 31-65 (79)
52 PF12877 DUF3827: Domain of un 95.7 0.011 2.3E-07 49.1 3.5 31 5-35 268-298 (684)
53 cd05144 RIO2_C RIO kinase fami 95.5 0.02 4.4E-07 40.9 3.9 29 123-151 21-49 (198)
54 cd05043 PTK_Ryk Pseudokinase d 95.5 0.022 4.8E-07 42.5 4.3 43 123-165 12-60 (280)
55 PF04689 S1FA: DNA binding pro 95.5 0.04 8.7E-07 31.7 4.2 33 2-34 8-40 (69)
56 cd06657 STKc_PAK4 Catalytic do 95.4 0.033 7.2E-07 42.1 5.1 42 124-165 27-69 (292)
57 PTZ00283 serine/threonine prot 95.4 0.026 5.6E-07 46.4 4.7 42 123-164 38-82 (496)
58 cd07879 STKc_p38delta_MAPK13 C 95.4 0.041 8.8E-07 42.7 5.5 43 123-165 21-66 (342)
59 PF08374 Protocadherin: Protoc 95.4 0.014 3.1E-07 42.0 2.7 28 6-33 37-64 (221)
60 KOG0694 Serine/threonine prote 95.4 0.087 1.9E-06 44.3 7.4 32 122-153 373-405 (694)
61 KOG0591 NIMA (never in mitosis 95.3 0.025 5.4E-07 43.0 3.9 53 108-165 15-70 (375)
62 cd06638 STKc_myosinIIIA Cataly 95.3 0.016 3.6E-07 43.3 3.1 52 112-164 11-65 (286)
63 KOG0600 Cdc2-related protein k 95.3 0.033 7.1E-07 45.3 4.8 30 123-152 123-153 (560)
64 cd06636 STKc_MAP4K4_6 Catalyti 95.3 0.035 7.6E-07 41.5 4.8 54 110-164 7-63 (282)
65 PF03109 ABC1: ABC1 family; I 95.3 0.0063 1.4E-07 40.3 0.6 33 120-152 13-46 (119)
66 cd05109 PTKc_HER2 Catalytic do 95.3 0.036 7.8E-07 41.4 4.8 42 123-164 13-60 (279)
67 PF10873 DUF2668: Protein of u 95.3 0.026 5.7E-07 38.1 3.5 36 4-39 58-93 (155)
68 cd05106 PTKc_CSF-1R Catalytic 95.3 0.036 7.7E-07 43.7 4.9 43 123-165 44-93 (374)
69 cd07877 STKc_p38alpha_MAPK14 C 95.3 0.03 6.5E-07 43.5 4.4 56 110-165 8-68 (345)
70 cd06644 STKc_STK10_LOK Catalyt 95.2 0.04 8.7E-07 41.5 4.9 43 123-165 18-61 (292)
71 KOG4250 TANK binding protein k 95.2 0.011 2.3E-07 49.8 1.8 43 123-165 19-63 (732)
72 KOG4278 Protein tyrosine kinas 95.2 0.013 2.8E-07 49.2 2.2 42 123-165 273-315 (1157)
73 cd06645 STKc_MAP4K3 Catalytic 95.2 0.052 1.1E-06 40.1 5.3 42 123-164 15-57 (267)
74 PF14575 EphA2_TM: Ephrin type 95.2 0.011 2.4E-07 35.8 1.3 18 108-125 56-73 (75)
75 PLN03225 Serine/threonine-prot 95.2 0.018 3.9E-07 48.1 3.0 29 123-151 138-171 (566)
76 cd06639 STKc_myosinIIIB Cataly 95.1 0.019 4.1E-07 43.2 2.9 44 109-152 12-58 (291)
77 cd07872 STKc_PCTAIRE2 Catalyti 95.1 0.041 8.9E-07 41.8 4.8 42 124-165 13-56 (309)
78 cd06637 STKc_TNIK Catalytic do 95.1 0.055 1.2E-06 40.1 5.2 41 124-165 13-54 (272)
79 KOG0594 Protein kinase PCTAIRE 95.1 0.031 6.7E-07 43.1 3.8 30 123-152 17-47 (323)
80 cd06656 STKc_PAK3 Catalytic do 95.0 0.054 1.2E-06 41.0 5.1 43 123-165 25-68 (297)
81 cd06659 STKc_PAK6 Catalytic do 95.0 0.056 1.2E-06 41.0 5.2 42 124-165 28-70 (297)
82 cd05067 PTKc_Lck_Blk Catalytic 95.0 0.027 5.8E-07 41.6 3.3 31 123-153 12-42 (260)
83 cd05052 PTKc_Abl Catalytic dom 94.9 0.055 1.2E-06 40.0 4.8 44 121-165 10-54 (263)
84 KOG0577 Serine/threonine prote 94.8 0.049 1.1E-06 45.6 4.5 36 123-158 32-68 (948)
85 KOG0663 Protein kinase PITSLRE 94.7 0.026 5.7E-07 43.9 2.6 30 123-152 82-112 (419)
86 cd05054 PTKc_VEGFR Catalytic d 94.7 0.043 9.4E-07 42.5 3.9 43 123-165 13-62 (337)
87 cd07878 STKc_p38beta_MAPK11 Ca 94.7 0.076 1.7E-06 41.0 5.2 43 123-165 21-66 (343)
88 cd05088 PTKc_Tie2 Catalytic do 94.6 0.074 1.6E-06 40.4 4.9 44 122-165 12-59 (303)
89 cd07864 STKc_CDK12 Catalytic d 94.5 0.087 1.9E-06 39.7 5.1 43 123-165 13-58 (302)
90 cd06654 STKc_PAK1 Catalytic do 94.5 0.093 2E-06 39.7 5.2 43 123-165 26-69 (296)
91 cd06658 STKc_PAK5 Catalytic do 94.4 0.082 1.8E-06 40.0 4.8 42 124-165 29-71 (292)
92 PTZ00263 protein kinase A cata 94.4 0.058 1.2E-06 41.6 4.0 43 123-165 24-70 (329)
93 cd05036 PTKc_ALK_LTK Catalytic 94.4 0.071 1.5E-06 39.8 4.4 43 123-165 12-61 (277)
94 KOG0607 MAP kinase-interacting 94.3 0.07 1.5E-06 41.4 4.1 56 108-166 72-128 (463)
95 KOG0198 MEKK and related serin 94.3 0.083 1.8E-06 40.9 4.5 43 123-165 23-66 (313)
96 cd05596 STKc_ROCK Catalytic do 94.2 0.04 8.7E-07 43.3 2.8 43 123-165 49-95 (370)
97 smart00090 RIO RIO-like kinase 94.2 0.062 1.3E-06 39.8 3.6 29 123-151 34-64 (237)
98 cd07876 STKc_JNK2 Catalytic do 94.2 0.09 1.9E-06 41.0 4.7 43 123-165 27-72 (359)
99 cd06647 STKc_PAK_I Catalytic d 94.2 0.1 2.3E-06 39.4 4.9 43 123-165 25-68 (293)
100 cd06648 STKc_PAK_II Catalytic 94.2 0.1 2.2E-06 39.2 4.8 43 123-165 25-68 (285)
101 PF14991 MLANA: Protein melan- 94.1 0.0077 1.7E-07 38.9 -1.2 20 15-34 30-49 (118)
102 cd05056 PTKc_FAK Catalytic dom 94.0 0.081 1.7E-06 39.2 4.0 43 123-165 12-59 (270)
103 PTZ00036 glycogen synthase kin 94.0 0.075 1.6E-06 42.9 4.1 29 123-151 72-101 (440)
104 cd05621 STKc_ROCK2 Catalytic d 94.0 0.064 1.4E-06 42.3 3.5 43 123-165 49-95 (370)
105 cd06607 STKc_TAO Catalytic dom 93.9 0.12 2.5E-06 39.3 4.8 43 123-165 21-67 (307)
106 cd06618 PKc_MKK7 Catalytic dom 93.9 0.12 2.6E-06 39.0 4.8 42 123-164 21-64 (296)
107 cd05111 PTK_HER3 Pseudokinase 93.9 0.11 2.4E-06 38.9 4.6 42 123-164 13-60 (279)
108 PF13908 Shisa: Wnt and FGF in 93.9 0.17 3.8E-06 35.8 5.3 23 7-29 75-97 (179)
109 cd05068 PTKc_Frk_like Catalyti 93.9 0.047 1E-06 40.3 2.5 30 123-152 12-41 (261)
110 cd05072 PTKc_Lyn Catalytic dom 93.9 0.076 1.7E-06 39.1 3.6 30 123-152 12-41 (261)
111 cd07856 STKc_Sty1_Hog1 Catalyt 93.8 0.078 1.7E-06 40.9 3.7 48 118-165 9-61 (328)
112 KOG1989 ARK protein kinase fam 93.8 0.087 1.9E-06 45.1 4.2 44 123-166 43-87 (738)
113 PF02480 Herpes_gE: Alphaherpe 93.8 0.018 3.8E-07 46.6 0.0 27 8-34 353-379 (439)
114 PRK04750 ubiB putative ubiquin 93.7 0.12 2.6E-06 43.0 4.7 30 123-152 125-155 (537)
115 cd05061 PTKc_InsR Catalytic do 93.7 0.12 2.5E-06 38.9 4.3 43 123-165 12-61 (288)
116 cd06635 STKc_TAO1 Catalytic do 93.7 0.15 3.2E-06 39.0 5.0 43 123-165 31-77 (317)
117 cd06614 STKc_PAK Catalytic dom 93.7 0.17 3.6E-06 37.9 5.1 42 123-165 25-67 (286)
118 cd05622 STKc_ROCK1 Catalytic d 93.7 0.069 1.5E-06 42.0 3.2 29 123-151 49-78 (371)
119 PTZ00024 cyclin-dependent prot 93.6 0.14 2.9E-06 39.5 4.7 29 123-151 15-44 (335)
120 cd07873 STKc_PCTAIRE1 Catalyti 93.6 0.16 3.5E-06 38.4 5.0 41 124-164 13-55 (301)
121 cd06655 STKc_PAK2 Catalytic do 93.6 0.16 3.4E-06 38.5 4.9 43 123-165 25-68 (296)
122 cd05034 PTKc_Src_like Catalyti 93.6 0.097 2.1E-06 38.5 3.7 30 123-152 12-41 (261)
123 cd07880 STKc_p38gamma_MAPK12 C 93.5 0.14 3.1E-06 39.6 4.7 43 123-165 21-66 (343)
124 cd05062 PTKc_IGF-1R Catalytic 93.5 0.12 2.6E-06 38.5 4.1 44 122-165 11-61 (277)
125 PF05454 DAG1: Dystroglycan (D 93.4 0.022 4.7E-07 43.4 0.0 12 22-33 160-171 (290)
126 PF06365 CD34_antigen: CD34/Po 93.4 0.37 7.9E-06 34.8 6.1 25 8-32 101-125 (202)
127 cd05053 PTKc_FGFR Catalytic do 93.4 0.1 2.2E-06 39.2 3.6 43 123-165 18-67 (293)
128 cd07875 STKc_JNK1 Catalytic do 93.4 0.17 3.6E-06 39.5 4.9 43 123-165 30-75 (364)
129 KOG1027 Serine/threonine prote 93.4 0.2 4.4E-06 43.2 5.5 29 123-152 515-544 (903)
130 KOG0661 MAPK related serine/th 93.3 0.026 5.6E-07 45.6 0.3 29 123-151 16-45 (538)
131 KOG0200 Fibroblast/platelet-de 93.3 0.11 2.3E-06 44.0 3.9 45 122-166 301-354 (609)
132 cd07845 STKc_CDK10 Catalytic d 93.3 0.16 3.4E-06 38.6 4.5 29 123-151 13-42 (309)
133 cd05055 PTKc_PDGFR Catalytic d 93.3 0.14 3.1E-06 38.8 4.3 43 123-165 41-90 (302)
134 cd05057 PTKc_EGFR_like Catalyt 93.2 0.15 3.2E-06 38.1 4.2 43 123-165 13-61 (279)
135 KOG0032 Ca2+/calmodulin-depend 93.2 0.16 3.4E-06 40.5 4.5 43 123-165 41-87 (382)
136 PHA03265 envelope glycoprotein 93.2 0.027 5.9E-07 43.5 0.2 32 4-35 344-375 (402)
137 PF15050 SCIMP: SCIMP protein 93.2 0.087 1.9E-06 34.4 2.4 22 16-37 16-37 (133)
138 PF01034 Syndecan: Syndecan do 93.2 0.024 5.2E-07 32.8 -0.1 32 4-36 10-41 (64)
139 COG0661 AarF Predicted unusual 93.1 0.098 2.1E-06 43.3 3.3 34 120-153 127-161 (517)
140 cd05098 PTKc_FGFR1 Catalytic d 93.1 0.17 3.7E-06 38.4 4.5 43 123-165 24-75 (307)
141 KOG0605 NDR and related serine 93.1 0.085 1.8E-06 43.2 2.8 29 123-151 147-176 (550)
142 PTZ00426 cAMP-dependent protei 93.1 0.13 2.8E-06 40.0 3.8 43 123-165 36-83 (340)
143 cd05032 PTKc_InsR_like Catalyt 93.1 0.17 3.6E-06 37.6 4.3 43 123-165 12-61 (277)
144 cd05110 PTKc_HER4 Catalytic do 93.1 0.15 3.2E-06 38.7 4.1 43 123-165 13-61 (303)
145 cd07874 STKc_JNK3 Catalytic do 93.0 0.21 4.5E-06 38.8 4.9 43 123-165 23-68 (355)
146 cd07866 STKc_BUR1 Catalytic do 92.9 0.22 4.8E-06 37.5 4.8 29 123-151 14-43 (311)
147 KOG2345 Serine/threonine prote 92.8 0.086 1.9E-06 39.5 2.2 45 123-167 27-72 (302)
148 cd05070 PTKc_Fyn_Yrk Catalytic 92.7 0.14 3E-06 37.7 3.4 29 123-151 12-40 (260)
149 cd06633 STKc_TAO3 Catalytic do 92.5 0.26 5.7E-06 37.6 4.8 43 123-165 27-73 (313)
150 cd05071 PTKc_Src Catalytic dom 92.5 0.15 3.2E-06 37.8 3.3 29 123-151 12-40 (262)
151 KOG1035 eIF-2alpha kinase GCN2 92.5 0.12 2.6E-06 46.4 3.0 30 123-152 485-515 (1351)
152 PF05568 ASFV_J13L: African sw 92.4 0.1 2.2E-06 35.3 2.1 26 10-35 32-57 (189)
153 cd06634 STKc_TAO2 Catalytic do 92.4 0.28 6.1E-06 37.3 4.9 43 123-165 21-67 (308)
154 PF15069 FAM163: FAM163 family 92.4 0.17 3.6E-06 34.3 3.1 20 13-32 9-29 (143)
155 cd07865 STKc_CDK9 Catalytic do 92.4 0.3 6.6E-06 36.8 5.0 29 123-151 18-47 (310)
156 cd07852 STKc_MAPK15 Catalytic 92.3 0.28 6.1E-06 37.8 4.8 42 124-165 14-58 (337)
157 PF15102 TMEM154: TMEM154 prot 92.2 0.096 2.1E-06 35.6 1.8 16 9-24 58-73 (146)
158 cd05101 PTKc_FGFR2 Catalytic d 92.2 0.24 5.1E-06 37.5 4.2 43 123-165 21-72 (304)
159 cd07850 STKc_JNK Catalytic dom 92.2 0.3 6.5E-06 37.9 4.8 43 123-165 22-67 (353)
160 KOG0574 STE20-like serine/thre 91.8 0.071 1.5E-06 41.1 0.9 40 123-164 39-79 (502)
161 cd05073 PTKc_Hck Catalytic dom 91.8 0.17 3.7E-06 37.3 3.0 32 122-153 11-42 (260)
162 PF07204 Orthoreo_P10: Orthore 91.6 0.081 1.8E-06 33.0 0.8 11 25-35 58-68 (98)
163 KOG1163 Casein kinase (serine/ 91.6 0.34 7.4E-06 36.4 4.1 31 123-153 21-52 (341)
164 cd05069 PTKc_Yes Catalytic dom 91.6 0.24 5.2E-06 36.5 3.5 29 123-151 12-40 (260)
165 cd05099 PTKc_FGFR4 Catalytic d 91.5 0.37 7.9E-06 36.7 4.5 43 123-165 18-69 (314)
166 PHA02882 putative serine/threo 91.3 0.19 4.1E-06 38.0 2.8 27 123-149 18-48 (294)
167 KOG0667 Dual-specificity tyros 91.2 0.3 6.4E-06 40.8 3.9 31 123-153 192-223 (586)
168 PF12273 RCR: Chitin synthesis 91.1 0.3 6.5E-06 32.7 3.3 21 20-40 9-29 (130)
169 cd06608 STKc_myosinIII_like Ca 91.1 0.54 1.2E-05 34.6 5.1 41 124-165 13-54 (275)
170 cd07851 STKc_p38 Catalytic dom 91.1 0.41 8.9E-06 37.1 4.5 43 123-165 21-66 (343)
171 PF14851 FAM176: FAM176 family 90.8 3.4 7.3E-05 28.6 8.2 20 10-29 24-43 (153)
172 cd05100 PTKc_FGFR3 Catalytic d 90.7 0.46 1E-05 36.6 4.4 43 123-165 18-69 (334)
173 KOG0983 Mitogen-activated prot 90.7 0.9 1.9E-05 34.8 5.7 38 110-152 90-128 (391)
174 PF12191 stn_TNFRSF12A: Tumour 90.3 0.1 2.3E-06 34.4 0.4 13 26-38 97-109 (129)
175 PF15069 FAM163: FAM163 family 90.0 3.2 6.9E-05 28.2 7.3 23 7-29 6-29 (143)
176 KOG0579 Ste20-like serine/thre 89.6 0.067 1.5E-06 45.2 -1.0 44 123-166 38-82 (1187)
177 PHA03209 serine/threonine kina 89.4 0.54 1.2E-05 36.7 4.0 29 123-151 72-101 (357)
178 KOG0583 Serine/threonine prote 89.4 0.57 1.2E-05 37.2 4.1 29 123-151 23-52 (370)
179 PTZ00266 NIMA-related protein 89.1 0.7 1.5E-05 41.4 4.7 44 123-166 19-65 (1021)
180 PF04971 Lysis_S: Lysis protei 88.9 0.36 7.7E-06 28.4 1.9 28 6-34 32-59 (68)
181 KOG0582 Ste20-like serine/thre 88.9 0.63 1.4E-05 37.7 3.9 42 123-164 32-75 (516)
182 PTZ00267 NIMA-related protein 88.5 0.74 1.6E-05 37.6 4.3 43 123-165 73-117 (478)
183 PHA03212 serine/threonine kina 88.5 0.52 1.1E-05 37.5 3.3 28 123-150 98-126 (391)
184 KOG1166 Mitotic checkpoint ser 88.4 0.46 1E-05 42.1 3.1 29 123-151 704-732 (974)
185 PHA03211 serine/threonine kina 87.9 0.65 1.4E-05 38.0 3.6 27 123-149 175-202 (461)
186 KOG0660 Mitogen-activated prot 87.9 0.57 1.2E-05 36.7 3.0 27 124-150 29-56 (359)
187 KOG0984 Mitogen-activated prot 87.9 1 2.2E-05 33.2 4.1 42 124-165 53-96 (282)
188 PF01102 Glycophorin_A: Glycop 87.4 0.48 1E-05 31.4 2.1 14 10-23 63-76 (122)
189 PRK09605 bifunctional UGMP fam 87.2 1 2.2E-05 37.4 4.4 24 123-147 339-362 (535)
190 KOG4721 Serine/threonine prote 86.9 0.37 8E-06 40.4 1.6 30 123-153 130-159 (904)
191 KOG1235 Predicted unusual prot 86.8 1.3 2.9E-05 36.9 4.8 49 104-152 135-196 (538)
192 PF00558 Vpu: Vpu protein; In 86.8 0.96 2.1E-05 27.7 3.0 13 9-21 6-18 (81)
193 PF06809 NPDC1: Neural prolife 86.6 0.73 1.6E-05 35.4 2.9 30 8-37 199-228 (341)
194 PF12768 Rax2: Cortical protei 86.5 1.4 3.1E-05 33.6 4.5 18 3-20 223-240 (281)
195 KOG4279 Serine/threonine prote 86.3 0.76 1.6E-05 39.7 3.1 44 124-167 582-626 (1226)
196 PF03229 Alpha_GJ: Alphavirus 85.7 0.48 1E-05 30.8 1.4 24 8-31 84-107 (126)
197 PF15347 PAG: Phosphoprotein a 85.7 1.4 3E-05 34.8 4.0 35 7-41 15-49 (428)
198 PF14575 EphA2_TM: Ephrin type 85.6 1.4 2.9E-05 26.6 3.2 18 10-27 4-21 (75)
199 KOG0615 Serine/threonine prote 85.6 1.4 3E-05 35.5 4.1 29 123-151 178-207 (475)
200 PHA03207 serine/threonine kina 85.5 1.3 2.9E-05 35.0 4.1 30 123-152 98-130 (392)
201 PRK10359 lipopolysaccharide co 85.1 1.9 4E-05 32.0 4.4 29 123-152 37-65 (232)
202 PF06697 DUF1191: Protein of u 85.0 0.62 1.3E-05 35.3 1.9 32 6-37 212-244 (278)
203 PHA03390 pk1 serine/threonine- 84.7 3.4 7.5E-05 30.6 5.8 27 125-151 24-51 (267)
204 PLN03150 hypothetical protein; 84.6 0.8 1.7E-05 38.9 2.6 28 4-31 541-568 (623)
205 KOG0598 Ribosomal protein S6 k 84.6 0.51 1.1E-05 37.0 1.3 29 123-151 31-60 (357)
206 PF08114 PMP1_2: ATPase proteo 84.5 1.8 3.9E-05 22.7 2.9 10 2-11 4-13 (43)
207 KOG1167 Serine/threonine prote 84.2 0.92 2E-05 36.2 2.6 31 123-153 42-76 (418)
208 KOG4258 Insulin/growth factor 84.1 1.3 2.9E-05 38.6 3.6 30 111-140 987-1017(1025)
209 KOG0611 Predicted serine/threo 84.1 0.85 1.8E-05 36.8 2.3 43 123-165 59-105 (668)
210 PF03597 CcoS: Cytochrome oxid 83.6 2.3 4.9E-05 23.0 3.2 25 10-34 3-27 (45)
211 PF02038 ATP1G1_PLM_MAT8: ATP1 83.2 0.93 2E-05 25.0 1.6 8 11-18 18-25 (50)
212 PF15176 LRR19-TM: Leucine-ric 82.6 1.6 3.4E-05 27.8 2.7 31 8-38 19-49 (102)
213 PF15330 SIT: SHP2-interacting 82.6 1.6 3.5E-05 28.3 2.8 17 22-38 14-30 (107)
214 KOG1164 Casein kinase (serine/ 82.0 2.1 4.5E-05 33.1 3.8 29 123-151 24-54 (322)
215 KOG0664 Nemo-like MAPK-related 81.7 0.68 1.5E-05 35.4 0.9 43 123-165 59-104 (449)
216 TIGR00847 ccoS cytochrome oxid 81.4 2.5 5.4E-05 23.5 2.9 26 9-34 3-28 (51)
217 PF04478 Mid2: Mid2 like cell 81.3 0.55 1.2E-05 32.3 0.3 31 6-37 52-82 (154)
218 KOG0592 3-phosphoinositide-dep 81.1 0.76 1.6E-05 38.1 1.1 30 122-151 78-108 (604)
219 KOG0696 Serine/threonine prote 80.9 0.79 1.7E-05 37.1 1.1 33 120-152 352-385 (683)
220 PHA03210 serine/threonine kina 80.8 2 4.3E-05 35.4 3.5 16 123-138 154-169 (501)
221 KOG1345 Serine/threonine kinas 80.5 5 0.00011 30.9 5.1 41 123-164 30-71 (378)
222 KOG0610 Putative serine/threon 80.4 4.1 8.8E-05 32.9 4.8 30 123-152 83-113 (459)
223 PF05454 DAG1: Dystroglycan (D 80.0 0.55 1.2E-05 35.9 0.0 31 8-38 149-179 (290)
224 PF15330 SIT: SHP2-interacting 79.4 2.8 6.1E-05 27.2 3.1 29 17-45 6-34 (107)
225 PF11770 GAPT: GRB2-binding ad 78.7 1.6 3.5E-05 29.8 1.9 27 9-35 9-36 (158)
226 KOG0586 Serine/threonine prote 78.3 4.1 8.8E-05 34.2 4.4 43 123-165 62-107 (596)
227 PF00558 Vpu: Vpu protein; In 77.9 1.8 4E-05 26.4 1.8 17 9-25 9-25 (81)
228 PHA03049 IMV membrane protein; 77.7 6.4 0.00014 23.0 3.9 14 22-35 14-27 (68)
229 PF12301 CD99L2: CD99 antigen 77.3 3.2 7E-05 29.2 3.1 10 6-15 114-123 (169)
230 KOG0578 p21-activated serine/t 77.3 4.6 0.0001 33.6 4.4 42 123-164 279-321 (550)
231 KOG0616 cAMP-dependent protein 77.1 2.1 4.5E-05 33.1 2.3 39 109-152 41-80 (355)
232 KOG1151 Tousled-like protein k 77.0 0.82 1.8E-05 37.3 0.1 28 123-150 469-497 (775)
233 PHA03286 envelope glycoprotein 76.4 3 6.5E-05 33.8 3.1 23 11-33 395-417 (492)
234 KOG0612 Rho-associated, coiled 76.1 1.3 2.8E-05 40.0 1.1 29 123-151 81-110 (1317)
235 PF12768 Rax2: Cortical protei 75.5 5.5 0.00012 30.5 4.2 31 5-35 229-259 (281)
236 PHA03283 envelope glycoprotein 75.0 14 0.00031 30.6 6.6 24 7-30 399-422 (542)
237 PF15179 Myc_target_1: Myc tar 74.6 4.2 9.1E-05 28.8 3.1 23 8-30 21-43 (197)
238 PF05393 Hum_adeno_E3A: Human 74.6 5.1 0.00011 24.8 3.1 34 9-43 36-69 (94)
239 PF05084 GRA6: Granule antigen 74.5 4.1 9E-05 28.3 3.0 25 14-38 154-178 (215)
240 TIGR02976 phageshock_pspB phag 74.5 5.1 0.00011 24.2 3.1 25 12-36 6-30 (75)
241 COG2112 Predicted Ser/Thr prot 73.6 9.1 0.0002 27.5 4.6 30 123-153 28-57 (201)
242 PTZ00208 65 kDa invariant surf 73.2 1.4 3.1E-05 35.0 0.6 28 6-34 386-413 (436)
243 KOG0668 Casein kinase II, alph 73.1 3.2 6.8E-05 31.1 2.3 31 123-153 44-75 (338)
244 PF10265 DUF2217: Uncharacteri 72.2 8.4 0.00018 32.0 4.7 16 23-38 28-43 (514)
245 KOG1165 Casein kinase (serine/ 72.2 5.2 0.00011 31.7 3.4 27 123-149 34-61 (449)
246 PF03988 DUF347: Repeat of Unk 71.8 7 0.00015 22.0 3.1 26 10-35 27-52 (55)
247 PF14979 TMEM52: Transmembrane 71.8 29 0.00064 23.8 7.1 24 8-31 20-43 (154)
248 PF11857 DUF3377: Domain of un 71.7 5.4 0.00012 23.9 2.7 25 7-31 29-53 (74)
249 PF15345 TMEM51: Transmembrane 71.7 3.5 7.6E-05 30.4 2.3 12 7-18 58-69 (233)
250 PF12877 DUF3827: Domain of un 71.7 3.5 7.6E-05 34.9 2.5 28 11-38 270-298 (684)
251 PF02480 Herpes_gE: Alphaherpe 70.5 1.4 3E-05 35.9 0.0 30 8-37 357-386 (439)
252 PF02158 Neuregulin: Neureguli 70.2 1.4 3.1E-05 34.8 0.0 13 6-18 9-21 (404)
253 KOG0690 Serine/threonine prote 70.0 5.7 0.00012 31.4 3.2 41 107-152 163-204 (516)
254 COG3197 FixS Uncharacterized p 70.0 8.4 0.00018 21.9 3.0 25 9-33 3-27 (58)
255 KOG0587 Traf2- and Nck-interac 69.0 5.2 0.00011 35.3 3.0 32 123-154 25-57 (953)
256 PF04906 Tweety: Tweety; Inte 68.7 5.7 0.00012 32.0 3.1 9 10-18 22-30 (406)
257 PF05961 Chordopox_A13L: Chord 68.5 17 0.00036 21.4 4.1 11 24-34 16-26 (68)
258 KOG1219 Uncharacterized conser 68.4 30 0.00064 34.7 7.6 11 24-34 4008-4018(4289)
259 PF12259 DUF3609: Protein of u 68.0 6.9 0.00015 31.1 3.4 8 15-22 305-312 (361)
260 PF10954 DUF2755: Protein of u 67.9 4.5 9.8E-05 25.1 1.8 15 21-35 85-99 (100)
261 PF06667 PspB: Phage shock pro 67.9 8.9 0.00019 23.2 3.1 15 17-31 11-25 (75)
262 PRK09458 pspB phage shock prot 67.4 11 0.00024 22.7 3.4 24 13-36 7-30 (75)
263 PF05510 Sarcoglycan_2: Sarcog 66.9 6 0.00013 31.6 2.8 23 12-34 289-311 (386)
264 KOG0596 Dual specificity; seri 66.8 3.6 7.7E-05 34.5 1.6 43 123-165 367-411 (677)
265 KOG1152 Signal transduction se 66.5 5.9 0.00013 33.6 2.8 29 123-151 567-596 (772)
266 KOG0669 Cyclin T-dependent kin 66.3 0.43 9.3E-06 36.1 -3.4 27 123-149 23-50 (376)
267 PF05478 Prominin: Prominin; 66.1 6.3 0.00014 34.7 3.1 12 10-21 95-106 (806)
268 PF11395 DUF2873: Protein of u 65.4 9.8 0.00021 19.5 2.5 14 17-30 17-30 (43)
269 KOG0585 Ca2+/calmodulin-depend 65.0 5.3 0.00012 32.9 2.2 29 123-151 103-132 (576)
270 KOG0666 Cyclin C-dependent kin 65.0 2.6 5.7E-05 32.9 0.5 31 123-153 30-65 (438)
271 PRK14750 kdpF potassium-transp 64.7 12 0.00027 17.9 2.6 11 10-20 3-13 (29)
272 PHA03281 envelope glycoprotein 64.6 22 0.00048 29.8 5.6 26 6-31 552-577 (642)
273 KOG3540 Beta amyloid precursor 64.6 5.8 0.00012 32.5 2.3 29 3-31 544-572 (615)
274 PF15183 MRAP: Melanocortin-2 64.4 27 0.00058 21.5 4.6 26 7-32 37-62 (90)
275 KOG3054 Uncharacterized conser 64.3 8.4 0.00018 28.8 2.9 15 20-34 12-26 (299)
276 PF11669 WBP-1: WW domain-bind 64.1 3.8 8.2E-05 26.3 1.0 15 21-35 33-47 (102)
277 PRK00523 hypothetical protein; 64.1 4.9 0.00011 24.0 1.4 22 11-32 7-28 (72)
278 PF05337 CSF-1: Macrophage col 63.8 2.3 5E-05 32.2 0.0 27 10-36 228-254 (285)
279 PF11980 DUF3481: Domain of un 63.5 9.3 0.0002 23.5 2.6 6 26-31 35-40 (87)
280 PF11980 DUF3481: Domain of un 62.6 12 0.00027 22.9 3.0 8 24-31 36-43 (87)
281 COG3763 Uncharacterized protei 62.5 7.3 0.00016 23.1 1.9 22 11-32 6-27 (71)
282 PF14654 Epiglycanin_C: Mucin, 61.0 11 0.00023 23.9 2.6 27 5-31 16-43 (106)
283 TIGR03867 MprA_tail MprA prote 60.7 15 0.00033 17.4 2.5 15 20-34 12-26 (27)
284 PF05624 LSR: Lipolysis stimul 60.6 14 0.0003 19.9 2.6 14 9-22 5-18 (49)
285 PF15048 OSTbeta: Organic solu 60.3 19 0.0004 24.0 3.7 16 6-21 34-49 (125)
286 PF06143 Baculo_11_kDa: Baculo 60.1 13 0.00027 23.0 2.8 22 11-32 38-59 (84)
287 PF15099 PIRT: Phosphoinositid 60.0 4.7 0.0001 26.8 0.9 17 18-34 90-106 (129)
288 PF02158 Neuregulin: Neureguli 60.0 2.9 6.4E-05 33.1 0.0 26 11-36 10-37 (404)
289 PF07010 Endomucin: Endomucin; 59.7 20 0.00044 26.5 4.2 11 8-18 189-199 (259)
290 PF02529 PetG: Cytochrome B6-F 58.9 23 0.00051 18.1 3.2 9 10-18 7-15 (37)
291 KOG3637 Vitronectin receptor, 58.9 16 0.00035 33.2 4.3 9 15-23 984-992 (1030)
292 PRK01844 hypothetical protein; 58.9 8.2 0.00018 23.0 1.7 22 12-33 7-28 (72)
293 PRK04778 septation ring format 58.8 6.9 0.00015 33.0 2.0 20 10-29 3-22 (569)
294 KOG0986 G protein-coupled rece 58.7 1.3 2.8E-05 36.2 -2.2 41 110-150 175-219 (591)
295 COG0478 RIO-like serine/threon 58.6 13 0.00029 28.6 3.2 30 121-150 95-124 (304)
296 KOG4433 Tweety transmembrane/c 58.3 12 0.00026 30.8 3.1 22 9-30 45-66 (526)
297 PF15050 SCIMP: SCIMP protein 58.1 16 0.00036 24.1 3.2 24 14-37 17-40 (133)
298 PHA03291 envelope glycoprotein 57.5 8.3 0.00018 30.3 2.0 17 7-23 288-304 (401)
299 KOG0670 U4/U6-associated splic 57.3 12 0.00025 31.6 2.9 30 123-152 438-468 (752)
300 PF05083 LST1: LST-1 protein; 57.2 9.7 0.00021 22.5 1.8 7 28-34 16-22 (74)
301 PF07423 DUF1510: Protein of u 56.6 7.9 0.00017 28.4 1.7 14 107-120 148-161 (217)
302 PF14979 TMEM52: Transmembrane 55.9 21 0.00045 24.5 3.5 28 7-34 23-50 (154)
303 KOG4482 Sarcoglycan complex, a 55.4 26 0.00057 28.0 4.4 22 11-33 302-323 (449)
304 PRK01741 cell division protein 54.5 11 0.00024 29.5 2.3 22 8-29 4-25 (332)
305 PF05568 ASFV_J13L: African sw 53.8 46 0.00099 22.8 4.9 27 14-40 33-59 (189)
306 PRK14748 kdpF potassium-transp 53.6 26 0.00055 16.8 2.9 14 10-23 3-16 (29)
307 KOG3514 Neurexin III-alpha [Si 52.5 31 0.00066 31.6 4.8 27 7-33 1512-1538(1591)
308 PF13179 DUF4006: Family of un 52.4 33 0.00071 20.1 3.5 8 13-20 13-20 (66)
309 KOG4717 Serine/threonine prote 52.3 13 0.00027 31.4 2.4 42 124-165 25-69 (864)
310 PHA02692 hypothetical protein; 52.1 23 0.00049 21.0 2.8 21 9-29 46-66 (70)
311 CHL00008 petG cytochrome b6/f 52.0 24 0.00053 17.9 2.5 9 10-18 7-15 (37)
312 TIGR02205 septum_zipA cell div 51.6 11 0.00023 29.0 1.8 10 9-18 4-13 (284)
313 COG3115 ZipA Cell division pro 51.5 18 0.00039 27.9 2.9 14 10-23 7-20 (324)
314 PF08374 Protocadherin: Protoc 51.5 3.8 8.2E-05 29.9 -0.6 12 12-23 39-50 (221)
315 KOG0195 Integrin-linked kinase 51.2 5.1 0.00011 30.8 0.0 41 123-164 196-238 (448)
316 PF12301 CD99L2: CD99 antigen 51.1 15 0.00031 26.0 2.3 23 6-28 110-132 (169)
317 PF14316 DUF4381: Domain of un 51.1 11 0.00024 25.6 1.7 20 19-38 28-47 (146)
318 PRK00665 petG cytochrome b6-f 50.7 28 0.00061 17.7 2.6 9 10-18 7-15 (37)
319 PF02656 DUF202: Domain of unk 50.7 15 0.00032 21.6 2.0 25 11-35 45-69 (73)
320 KOG3637 Vitronectin receptor, 50.3 28 0.00061 31.8 4.4 34 4-37 976-1009(1030)
321 KOG0576 Mitogen-activated prot 49.5 4.7 0.0001 34.6 -0.4 31 123-153 21-52 (829)
322 PF10883 DUF2681: Protein of u 49.5 15 0.00033 22.8 1.9 18 14-31 7-24 (87)
323 cd05083 PTKc_Chk Catalytic dom 49.3 15 0.00033 26.6 2.3 17 122-138 11-27 (254)
324 TIGR01433 CyoA cytochrome o ub 49.1 12 0.00027 27.6 1.8 6 133-138 190-195 (226)
325 PF14531 Kinase-like: Kinase-l 49.0 27 0.00059 26.9 3.6 42 123-164 18-63 (288)
326 KOG1226 Integrin beta subunit 48.9 18 0.0004 31.4 2.9 24 8-31 712-735 (783)
327 PF14986 DUF4514: Domain of un 48.8 34 0.00074 19.1 3.0 18 8-25 23-40 (61)
328 PRK00269 zipA cell division pr 48.7 27 0.00058 26.9 3.5 17 22-38 17-33 (293)
329 PRK13855 type IV secretion sys 48.6 1.2E+02 0.0025 24.4 7.1 23 16-38 34-56 (376)
330 PHA03164 hypothetical protein; 47.6 39 0.00084 20.4 3.4 8 21-28 70-77 (88)
331 PF10577 UPF0560: Uncharacteri 47.6 24 0.00051 31.0 3.4 34 13-46 275-309 (807)
332 PF15012 DUF4519: Domain of un 47.5 7.5 0.00016 21.9 0.3 18 12-29 33-50 (56)
333 PF09472 MtrF: Tetrahydrometha 46.7 18 0.0004 21.1 1.9 19 8-26 41-59 (64)
334 KOG0695 Serine/threonine prote 46.7 7.9 0.00017 30.7 0.5 29 123-151 256-285 (593)
335 COG4218 MtrF Tetrahydromethano 46.4 26 0.00057 20.7 2.5 20 8-27 50-69 (73)
336 PF04210 MtrG: Tetrahydrometha 46.0 11 0.00025 22.2 0.9 12 10-21 47-58 (70)
337 PF14584 DUF4446: Protein of u 45.9 14 0.0003 25.5 1.5 27 124-150 104-131 (151)
338 cd05039 PTKc_Csk_like Catalyti 45.3 23 0.00049 25.7 2.7 17 123-139 12-28 (256)
339 cd05082 PTKc_Csk Catalytic dom 44.7 18 0.0004 26.2 2.2 20 123-142 12-31 (256)
340 PF13706 PepSY_TM_3: PepSY-ass 44.3 40 0.00086 17.1 2.8 21 10-30 11-31 (37)
341 PF15179 Myc_target_1: Myc tar 43.9 29 0.00062 24.8 2.8 24 10-34 27-50 (197)
342 PF12606 RELT: Tumour necrosis 43.6 57 0.0012 18.0 4.5 6 13-18 6-11 (50)
343 PF13095 FTA2: Kinetochore Sim 43.2 30 0.00064 25.3 2.9 28 120-148 40-68 (207)
344 PF06160 EzrA: Septation ring 43.1 12 0.00026 31.5 1.1 15 15-29 4-18 (560)
345 PF14851 FAM176: FAM176 family 43.0 31 0.00066 23.9 2.8 23 8-30 26-48 (153)
346 KOG0671 LAMMER dual specificit 42.9 9.5 0.00021 30.5 0.4 32 123-154 95-127 (415)
347 PF11174 DUF2970: Protein of u 42.5 46 0.001 18.8 3.1 15 12-26 34-48 (56)
348 KOG1290 Serine/threonine prote 41.7 1.1E+02 0.0024 25.7 6.2 30 123-152 84-114 (590)
349 PF11694 DUF3290: Protein of u 41.7 26 0.00057 24.1 2.4 19 131-149 116-135 (149)
350 PF04341 DUF485: Protein of un 41.3 40 0.00087 20.9 3.0 27 8-34 52-78 (91)
351 PRK01026 tetrahydromethanopter 41.0 20 0.00042 21.7 1.4 15 7-21 51-65 (77)
352 TIGR03370 PEPCTERM_Roseo varia 40.5 21 0.00047 16.8 1.2 14 21-34 10-23 (26)
353 KOG4645 MAPKKK (MAP kinase kin 40.1 18 0.00038 33.8 1.6 28 123-150 1241-1269(1509)
354 PRK11594 efflux system membran 39.8 50 0.0011 19.4 3.0 32 1-32 1-32 (67)
355 COG5294 Uncharacterized protei 39.4 21 0.00045 23.2 1.5 19 13-31 5-23 (113)
356 TIGR02205 septum_zipA cell div 39.0 30 0.00065 26.6 2.5 22 13-34 5-26 (284)
357 PF07438 DUF1514: Protein of u 38.8 24 0.00051 20.5 1.5 6 8-13 3-8 (66)
358 COG4064 MtrG Tetrahydromethano 38.4 30 0.00065 20.4 1.9 12 10-21 50-61 (75)
359 PRK13275 mtrF tetrahydromethan 38.2 34 0.00074 20.1 2.1 16 8-23 41-56 (67)
360 PF10389 CoatB: Bacteriophage 37.8 53 0.0012 17.8 2.7 10 21-30 32-41 (46)
361 KOG0033 Ca2+/calmodulin-depend 37.8 1.4 3.1E-05 33.3 -4.6 43 123-165 17-62 (355)
362 PTZ00459 mucin-associated surf 37.8 22 0.00047 27.4 1.6 13 20-32 9-21 (291)
363 PRK03427 cell division protein 37.3 42 0.0009 26.4 3.1 20 9-28 7-26 (333)
364 PF06422 PDR_CDR: CDR ABC tran 37.3 51 0.0011 21.0 3.1 27 6-32 48-74 (103)
365 PF07253 Gypsy: Gypsy protein; 36.7 32 0.0007 28.4 2.5 17 12-28 420-436 (472)
366 PF13967 RSN1_TM: Late exocyto 36.6 69 0.0015 21.9 3.9 20 15-34 7-26 (157)
367 PF12732 YtxH: YtxH-like prote 36.4 33 0.00071 20.3 2.0 8 11-18 4-11 (74)
368 PF15234 LAT: Linker for activ 36.4 44 0.00095 23.9 2.8 25 11-35 8-33 (230)
369 PF10031 DUF2273: Small integr 36.3 39 0.00084 18.7 2.1 17 7-23 9-25 (51)
370 PF14828 Amnionless: Amnionles 36.1 1.3E+02 0.0029 24.6 5.9 20 9-28 340-359 (437)
371 COG4980 GvpP Gas vesicle prote 35.9 32 0.00068 22.6 1.9 14 7-20 6-19 (115)
372 PRK05585 yajC preprotein trans 35.7 18 0.00039 23.4 0.8 6 129-134 65-70 (106)
373 TIGR01149 mtrG N5-methyltetrah 35.6 57 0.0012 19.3 2.8 13 10-22 47-59 (70)
374 PF12664 DUF3789: Protein of u 35.6 23 0.0005 17.8 1.0 17 10-26 7-23 (34)
375 PF15298 AJAP1_PANP_C: AJAP1/P 35.6 44 0.00095 24.2 2.7 25 9-33 101-126 (205)
376 PRK09510 tolA cell envelope in 35.3 48 0.001 26.7 3.2 10 139-148 336-345 (387)
377 PRK04335 cell division protein 35.2 32 0.00069 26.8 2.1 14 9-22 6-19 (313)
378 KOG1094 Discoidin domain recep 35.0 1.2E+02 0.0027 26.2 5.5 22 13-34 396-417 (807)
379 PF15117 UPF0697: Uncharacteri 34.3 18 0.0004 22.3 0.6 18 21-38 25-42 (99)
380 PHA02650 hypothetical protein; 34.1 91 0.002 19.0 3.5 7 24-30 64-70 (81)
381 PF08391 Ly49: Ly49-like prote 34.1 13 0.00029 24.5 0.0 23 6-28 3-25 (119)
382 PRK10525 cytochrome o ubiquino 33.6 24 0.00053 27.5 1.3 6 133-138 202-207 (315)
383 PF10164 DUF2367: Uncharacteri 33.5 60 0.0013 20.6 2.8 10 14-23 67-76 (98)
384 PF12297 EVC2_like: Ellis van 33.4 47 0.001 27.0 2.9 26 9-34 67-92 (429)
385 PRK08455 fliL flagellar basal 32.9 79 0.0017 22.5 3.7 14 10-23 20-33 (182)
386 PF11014 DUF2852: Protein of u 32.5 40 0.00088 22.1 2.0 21 6-26 9-29 (115)
387 PF05356 Phage_Coat_B: Phage C 32.5 65 0.0014 19.4 2.7 17 11-27 61-77 (83)
388 PF13940 Ldr_toxin: Toxin Ldr, 32.2 74 0.0016 15.9 2.6 11 24-34 24-34 (35)
389 PF01788 PsbJ: PsbJ; InterPro 30.8 87 0.0019 16.3 3.0 11 7-17 10-20 (40)
390 KOG1236 Predicted unusual prot 30.6 36 0.00077 28.1 1.8 42 114-155 185-243 (565)
391 COG4477 EzrA Negative regulato 30.5 44 0.00094 28.0 2.3 9 12-20 4-12 (570)
392 PRK11901 hypothetical protein; 30.2 44 0.00094 26.2 2.2 16 132-148 272-287 (327)
393 PF06716 DUF1201: Protein of u 30.2 71 0.0015 17.3 2.3 20 15-34 14-33 (54)
394 PF07271 Cytadhesin_P30: Cytad 30.1 31 0.00066 26.2 1.3 18 10-27 73-90 (279)
395 PF11808 DUF3329: Domain of un 30.0 24 0.00052 21.9 0.6 15 9-23 21-35 (90)
396 PF10779 XhlA: Haemolysin XhlA 29.9 43 0.00093 19.7 1.7 14 8-21 52-65 (71)
397 COG5547 Small integral membran 29.8 71 0.0015 18.2 2.4 10 9-18 11-20 (62)
398 PF05795 Plasmodium_Vir: Plasm 29.3 57 0.0012 25.2 2.8 7 24-30 296-302 (354)
399 COG1718 RIO1 Serine/threonine 29.1 71 0.0015 24.3 3.1 29 123-151 54-82 (268)
400 PF07010 Endomucin: Endomucin; 29.1 51 0.0011 24.4 2.3 13 11-23 188-200 (259)
401 KOG4056 Translocase of outer m 28.7 85 0.0018 21.4 3.1 18 21-38 18-35 (143)
402 KOG1240 Protein kinase contain 28.7 49 0.0011 30.7 2.5 42 123-165 29-71 (1431)
403 KOG4433 Tweety transmembrane/c 28.5 56 0.0012 27.1 2.6 24 11-34 51-74 (526)
404 PF08135 EPV_E5: Major transfo 28.1 1E+02 0.0022 16.2 2.7 22 10-31 10-31 (44)
405 TIGR01195 oadG_fam sodium pump 28.1 95 0.002 19.0 3.0 6 13-18 12-17 (82)
406 TIGR02507 MtrF tetrahydrometha 28.0 65 0.0014 18.8 2.1 17 8-24 41-57 (65)
407 PF13268 DUF4059: Protein of u 27.8 99 0.0021 18.4 2.9 14 21-34 21-34 (72)
408 PF14960 ATP_synth_reg: ATP sy 27.5 88 0.0019 17.2 2.5 10 22-31 35-44 (49)
409 TIGR02588 conserved hypothetic 27.5 1E+02 0.0022 20.5 3.2 19 15-33 9-27 (122)
410 PF00943 Alpha_E2_glycop: Alph 27.3 56 0.0012 26.3 2.3 24 10-33 354-377 (403)
411 PF06084 Cytomega_TRL10: Cytom 27.2 49 0.0011 21.6 1.7 10 24-33 73-82 (150)
412 PHA03105 EEV glycoprotein; Pro 27.0 33 0.00071 23.9 0.9 13 123-135 123-135 (188)
413 KOG0584 Serine/threonine prote 26.8 23 0.0005 30.1 0.2 45 122-166 45-94 (632)
414 PF09716 ETRAMP: Malarial earl 26.8 94 0.002 19.1 2.9 6 9-14 57-62 (84)
415 COG5353 Uncharacterized protei 25.8 1E+02 0.0022 21.3 3.0 23 130-152 117-139 (161)
416 PF11240 DUF3042: Protein of u 25.8 1.3E+02 0.0028 16.9 3.0 21 11-31 7-27 (54)
417 PLN00113 leucine-rich repeat r 25.7 71 0.0015 28.6 3.0 6 11-16 633-638 (968)
418 PF15468 DUF4636: Domain of un 25.6 86 0.0019 23.1 2.8 16 16-31 41-56 (243)
419 PF10812 DUF2561: Protein of u 25.5 1.7E+02 0.0038 21.2 4.3 14 8-21 64-77 (207)
420 PF06596 PsbX: Photosystem II 25.5 1.1E+02 0.0023 16.0 2.4 21 10-30 10-30 (39)
421 PF15013 CCSMST1: CCSMST1 fami 25.1 72 0.0016 19.3 2.1 6 29-34 46-51 (77)
422 PF08113 CoxIIa: Cytochrome c 24.6 1E+02 0.0022 15.4 2.2 33 1-33 1-33 (34)
423 PHA02975 hypothetical protein; 24.6 97 0.0021 18.3 2.4 27 4-31 40-66 (69)
424 PF03672 UPF0154: Uncharacteri 24.6 69 0.0015 18.7 1.8 24 13-36 1-24 (64)
425 PF07172 GRP: Glycine rich pro 24.6 1.4E+02 0.0031 18.8 3.5 40 10-49 5-44 (95)
426 PRK09550 mtnK methylthioribose 24.5 93 0.002 25.2 3.2 24 125-148 34-58 (401)
427 PF13120 DUF3974: Domain of un 24.5 79 0.0017 20.0 2.2 26 10-35 7-32 (126)
428 PF04995 CcmD: Heme exporter p 24.5 95 0.0021 16.5 2.3 25 12-36 7-31 (46)
429 TIGR03546 conserved hypothetic 24.5 67 0.0015 22.3 2.1 27 11-37 113-139 (154)
430 TIGR01432 QOXA cytochrome aa3 24.4 83 0.0018 23.0 2.7 26 12-37 27-52 (217)
431 PRK10905 cell division protein 24.2 59 0.0013 25.4 1.9 15 12-26 2-16 (328)
432 COG2034 Predicted membrane pro 24.2 1.2E+02 0.0027 18.7 3.0 24 11-34 62-85 (85)
433 PF12072 DUF3552: Domain of un 24.1 65 0.0014 23.2 2.1 28 10-37 1-28 (201)
434 PRK01723 3-deoxy-D-manno-octul 24.0 1E+02 0.0023 22.6 3.2 26 124-150 38-64 (239)
435 PF04246 RseC_MucC: Positive r 24.0 1E+02 0.0023 20.4 3.0 32 13-44 97-128 (135)
436 PHA02849 putative transmembran 23.8 1.3E+02 0.0028 18.3 2.9 29 4-32 12-40 (82)
437 PF10215 Ost4: Oligosaccaryltr 23.8 40 0.00087 17.1 0.7 24 1-24 1-24 (35)
438 PF02404 SCF: Stem cell factor 23.7 26 0.00057 26.4 0.0 35 5-39 212-246 (273)
439 KOG3884 Neural proliferation, 23.6 63 0.0014 25.6 2.0 32 5-36 294-325 (437)
440 PF08370 PDR_assoc: Plant PDR 23.5 1.4E+02 0.003 17.4 3.0 32 7-38 30-61 (65)
441 PF07095 IgaA: Intracellular g 23.4 87 0.0019 27.2 2.9 26 10-35 4-29 (705)
442 KOG3653 Transforming growth fa 23.2 83 0.0018 26.2 2.7 33 8-40 153-185 (534)
443 PF11431 Transport_MerF: Membr 22.9 59 0.0013 17.6 1.2 20 18-37 27-46 (46)
444 PF11359 gpUL132: Glycoprotein 22.9 76 0.0016 23.3 2.2 33 7-39 52-84 (235)
445 PF13807 GNVR: G-rich domain o 22.8 99 0.0022 18.5 2.5 25 5-29 55-79 (82)
446 PRK03814 oxaloacetate decarbox 22.7 1.4E+02 0.0029 18.5 3.0 20 12-31 15-34 (85)
447 PF10265 DUF2217: Uncharacteri 22.4 2.2E+02 0.0047 24.0 4.9 90 16-105 18-107 (514)
448 PRK04570 cell division protein 22.0 1.7E+02 0.0036 21.9 3.8 38 14-51 9-46 (243)
449 PHA03030 hypothetical protein; 21.9 1.1E+02 0.0023 19.7 2.4 23 13-35 4-26 (122)
450 TIGR03382 GC_trans_RRR Myxococ 21.8 1.1E+02 0.0024 14.4 2.1 21 15-35 7-27 (27)
451 PF09919 DUF2149: Uncharacteri 21.8 95 0.0021 19.5 2.2 19 126-146 71-90 (92)
452 PF00672 HAMP: HAMP domain; I 21.6 1.1E+02 0.0025 17.1 2.5 22 14-35 1-22 (70)
453 PF12297 EVC2_like: Ellis van 21.6 1E+02 0.0023 25.1 2.9 47 7-53 69-115 (429)
454 PF05950 Orthopox_A36R: Orthop 21.5 20 0.00044 23.9 -0.8 30 7-36 1-30 (158)
455 PRK12659 putative monovalent c 21.4 1.1E+02 0.0024 20.1 2.6 27 10-36 75-101 (117)
456 PRK10299 PhoPQ regulatory prot 21.3 78 0.0017 17.1 1.5 24 1-24 1-24 (47)
457 PRK02919 oxaloacetate decarbox 21.1 1.5E+02 0.0033 18.1 3.0 20 12-31 14-33 (82)
458 PRK12363 phosphoglycerol trans 20.9 1.1E+02 0.0023 26.9 3.0 40 1-40 63-102 (703)
459 PF02628 COX15-CtaA: Cytochrom 20.8 1.2E+02 0.0027 23.1 3.2 26 13-38 73-98 (302)
460 PHA02669 hypothetical protein; 20.8 1.2E+02 0.0025 21.4 2.6 23 6-28 3-25 (210)
461 PHA03054 IMV membrane protein; 20.8 1.9E+02 0.0041 17.2 3.2 30 3-32 41-70 (72)
462 PF02936 COX4: Cytochrome c ox 20.5 1.4E+02 0.003 20.3 3.0 20 13-32 77-96 (142)
463 PF07584 BatA: Aerotolerance r 20.5 1.7E+02 0.0037 17.2 3.2 29 16-44 9-37 (77)
464 PF10969 DUF2771: Protein of u 20.3 1.7E+02 0.0038 20.4 3.5 34 9-42 3-36 (161)
465 COG1580 FliL Flagellar basal b 20.3 1.6E+02 0.0035 20.5 3.4 29 2-30 12-40 (159)
466 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 20.3 1.3E+02 0.0029 22.0 3.3 28 139-166 31-58 (284)
467 smart00811 Alpha_kinase Alpha- 20.2 2.8E+02 0.0062 20.0 4.7 42 126-167 20-66 (198)
468 PHA03290 envelope glycoprotein 20.2 1.6E+02 0.0036 23.2 3.6 42 1-42 266-307 (357)
469 KOG0684 Cytochrome P450 [Secon 20.1 1.3E+02 0.0028 25.0 3.2 30 8-37 1-30 (486)
No 1
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=2.6e-10 Score=89.33 Aligned_cols=62 Identities=45% Similarity=0.846 Sum_probs=53.6
Q ss_pred CCCccCHHHHHHHhhhhh--hhccccccccEEEEEcCCCcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 105 GIPRYAYKDIQKATQNFT--NILGQGAFGPVYKATMPSGGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 105 ~~~~~~~~~l~~~~~~f~--~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
....|++.+|..+|++|+ +.||+|+||.||+|.+++|..||||+++....+...+|..|+++
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ 124 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEI 124 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHH
Confidence 456799999999999998 89999999999999999999999999977543315679999864
No 2
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=98.88 E-value=4.9e-08 Score=79.19 Aligned_cols=57 Identities=23% Similarity=0.454 Sum_probs=44.5
Q ss_pred CHHHHHHHhhhhhhhccccccccEEEEEcCCCcEEEEEEeccCCcc-cHHHHHHHHhh
Q 031038 110 AYKDIQKATQNFTNILGQGAFGPVYKATMPSGGVAAIKVLASDSHQ-GEKEFQTEVRA 166 (167)
Q Consensus 110 ~~~~l~~~~~~f~~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~-~~~~F~~e~~~ 166 (167)
.+.|..+...-|...||+|.||+|..-+.+++..||||+|+..... ..++|..|+++
T Consensus 531 al~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIki 588 (807)
T KOG1094|consen 531 ALVEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKI 588 (807)
T ss_pred chhhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHH
Confidence 3444444444556799999999999999988899999999876544 45899999864
No 3
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-08 Score=79.91 Aligned_cols=39 Identities=31% Similarity=0.648 Sum_probs=30.3
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||+|.||+||+|.| -|..||||.+.... +..|.+|.|
T Consensus 217 e~IGkGRyGEVwrG~w-rGe~VAVKiF~srd---E~SWfrEtE 255 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRW-RGEDVAVKIFSSRD---ERSWFRETE 255 (513)
T ss_pred EEecCccccceeeccc-cCCceEEEEecccc---hhhhhhHHH
Confidence 5899999999999999 56899999996542 345555544
No 4
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.62 E-value=7e-08 Score=80.46 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=34.7
Q ss_pred hhccccccccEEEEEcC--C--CcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP--S--GGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~--~--g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.+||.|.||+||+|.|. + ...||+|.|+... ..+..+|+.|.-
T Consensus 635 ~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAs 682 (996)
T KOG0196|consen 635 KVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEAS 682 (996)
T ss_pred EEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhh
Confidence 68999999999999992 2 3479999998755 445689999874
No 5
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.56 E-value=2.1e-07 Score=73.73 Aligned_cols=37 Identities=32% Similarity=0.723 Sum_probs=28.9
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCCcccHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDSHQGEKEFQTE 163 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~~~~F~~e 163 (167)
.++|+|.||.||||.|.+ +.||||.+.... ...|..|
T Consensus 216 eli~~Grfg~V~KaqL~~-~~VAVKifp~~~---kqs~~~E 252 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLDN-RLVAVKIFPEQE---KQSFQNE 252 (534)
T ss_pred HHhhcCccceeehhhccC-ceeEEEecCHHH---HHHHHhH
Confidence 389999999999999955 899999995442 3345544
No 6
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.5e-07 Score=78.65 Aligned_cols=56 Identities=29% Similarity=0.496 Sum_probs=42.9
Q ss_pred CCccCHHHHHHHhhhhhhhccccccccEEEEEcCC------CcEEEEEEeccCCcc-cHHHHHHHHhh
Q 031038 106 IPRYAYKDIQKATQNFTNILGQGAFGPVYKATMPS------GGVAAIKVLASDSHQ-GEKEFQTEVRA 166 (167)
Q Consensus 106 ~~~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l~~------g~~vavk~l~~~~~~-~~~~F~~e~~~ 166 (167)
..+++..+++ |...||+|.||+||+|.+.+ .+.||||.|+..... ...+|.+|++.
T Consensus 480 ~~~i~r~~i~-----~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeL 542 (774)
T KOG1026|consen 480 VLEIPRSDIV-----FKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAEL 542 (774)
T ss_pred eeEechhhee-----ehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHH
Confidence 3456666663 44589999999999998833 457999999876655 67899999864
No 7
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=98.35 E-value=6.2e-07 Score=75.51 Aligned_cols=42 Identities=45% Similarity=0.698 Sum_probs=33.0
Q ss_pred hhccccccccEEEEEc-CCCc----EEEEEEecc-CCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGG----VAAIKVLAS-DSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~----~vavk~l~~-~~~~~~~~F~~e~ 164 (167)
.+||.|+||+||+|.+ +.|. .||+|.+.. ...+...+|++|+
T Consensus 702 kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeA 749 (1177)
T KOG1025|consen 702 KVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEA 749 (1177)
T ss_pred ceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHH
Confidence 3899999999999998 5554 689999955 4355567888876
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.09 E-value=2.2e-05 Score=68.82 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=31.6
Q ss_pred cCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 109 YAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 109 ~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
++++++.... ...++||+|+||.||+|.. .+|..||||.++..
T Consensus 683 ~~~~~~~~~~-~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~ 726 (968)
T PLN00113 683 ITINDILSSL-KEENVISRGKKGASYKGKSIKNGMQFVVKEINDV 726 (968)
T ss_pred hhHHHHHhhC-CcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence 4455554332 1226899999999999997 57889999999654
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=98.05 E-value=3.2e-06 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=25.5
Q ss_pred cCCcceeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 3 HKSDLVIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 3 ~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
+++...|++|++|+++++++++++++|++||++||.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 477888999999999998887776666666655554
No 10
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=98.02 E-value=3.3e-05 Score=63.22 Aligned_cols=41 Identities=32% Similarity=0.580 Sum_probs=33.4
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||.|.||+||+|.|-+ .||||.|+-.. ....+.|..|+.
T Consensus 398 ~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa 440 (678)
T KOG0193|consen 398 ERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVA 440 (678)
T ss_pred ceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHH
Confidence 489999999999999964 69999996543 344588999985
No 11
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=97.75 E-value=4.6e-05 Score=39.17 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=18.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHhh-hheeccc
Q 031038 8 VIIGICVGLALGILIATLVFFGL-RWYKKHD 37 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~-~~~r~~~ 37 (167)
..++|++|++++++++++.++++ |+|||.+
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 35677888887776666655554 4555444
No 12
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=97.53 E-value=3.3e-05 Score=52.47 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=22.1
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
..++||+++|+.+.++++++++++++|+|++|.
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 468899999988777666555555555554443
No 13
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=97.44 E-value=0.00022 Score=56.05 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=28.2
Q ss_pred hhccccccccEEEEEcC------CCcEEEEEEeccCC-cccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMP------SGGVAAIKVLASDS-HQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~-~~~~~~F~~e~ 164 (167)
.++-||.||.||+|.|. +.+.|-||.++... ..+..-|++|.
T Consensus 290 ~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es 338 (563)
T KOG1024|consen 290 CLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQES 338 (563)
T ss_pred hhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 78899999999999663 33456777775433 33345565553
No 14
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00024 Score=61.95 Aligned_cols=46 Identities=37% Similarity=0.580 Sum_probs=35.5
Q ss_pred hhhhhccccccccEEEEEcC--CCc----EEEEEEeccCC-cccHHHHHHHHh
Q 031038 120 NFTNILGQGAFGPVYKATMP--SGG----VAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 120 ~f~~~lg~g~~g~vy~g~l~--~g~----~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.+.+.||+|+||.||+|++. +|. .||||+|+... .+...+|+.|.-
T Consensus 695 ~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~ 747 (1025)
T KOG1095|consen 695 TLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEAL 747 (1025)
T ss_pred EeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHH
Confidence 45569999999999999993 232 48999997654 455689999863
No 15
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=97.25 E-value=0.00031 Score=56.45 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=37.4
Q ss_pred hhhhhccccccccEEEEEcCCCcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 120 NFTNILGQGAFGPVYKATMPSGGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 120 ~f~~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
.+.+.||+|.||.||.|.+++...||+|.++.. ....++|.+|+.+
T Consensus 209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~i 254 (468)
T KOG0197|consen 209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQI 254 (468)
T ss_pred HHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHH
Confidence 445689999999999999977779999999765 3446789988753
No 16
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=97.20 E-value=0.0004 Score=52.11 Aligned_cols=59 Identities=27% Similarity=0.448 Sum_probs=44.6
Q ss_pred CCCCCccCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEeccCCc-ccHHHHHHHHhh
Q 031038 103 ASGIPRYAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLASDSH-QGEKEFQTEVRA 166 (167)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~-~~~~~F~~e~~~ 166 (167)
......|+.++|+... .||.|.||.|+|-.. +.|...|||+++.... .....|+.|.++
T Consensus 55 ~~~~~~F~~~~Lqdlg-----~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~ 115 (361)
T KOG1006|consen 55 DAHLHTFTSDNLQDLG-----EIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDT 115 (361)
T ss_pred cccccccccchHHHHH-----HhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHH
Confidence 3344567777777655 899999999999888 6789999999977554 445677777654
No 17
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.20 E-value=0.00042 Score=56.84 Aligned_cols=44 Identities=20% Similarity=0.399 Sum_probs=31.4
Q ss_pred hhhh--hhccccccccEEEEEc-----------------CCCcEEEEEEeccCCcccHHHHHH
Q 031038 119 QNFT--NILGQGAFGPVYKATM-----------------PSGGVAAIKVLASDSHQGEKEFQT 162 (167)
Q Consensus 119 ~~f~--~~lg~g~~g~vy~g~l-----------------~~g~~vavk~l~~~~~~~~~~F~~ 162 (167)
.+|. +.||+|+||.||+|.+ .++..||||+++.......++|..
T Consensus 145 d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~ 207 (507)
T PLN03224 145 DDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLK 207 (507)
T ss_pred cCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHh
Confidence 4554 7999999999999975 235679999996544333445544
No 18
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=97.19 E-value=0.00013 Score=38.20 Aligned_cols=30 Identities=33% Similarity=0.617 Sum_probs=12.0
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 5 SDLVIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+....+++.+++-+++++++++++++.+||
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEe
Confidence 333333333333344444444444443333
No 19
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=97.14 E-value=0.00022 Score=45.34 Aligned_cols=29 Identities=17% Similarity=-0.069 Sum_probs=18.9
Q ss_pred CcCCcceeehhhHHHHHHHHHHHHHHHhh
Q 031038 2 VHKSDLVIIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 2 ~~~s~~~ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
.+++++.|+||.+|+++++.+++.++++|
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHHhhe
Confidence 35678899999998776554443333333
No 20
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=97.12 E-value=0.0011 Score=52.17 Aligned_cols=42 Identities=33% Similarity=0.669 Sum_probs=32.7
Q ss_pred hhccccccccEEEEEcCCCcE-EEEEEeccCCccc--HHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSGGV-AAIKVLASDSHQG--EKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~-vavk~l~~~~~~~--~~~F~~e~~ 165 (167)
+.+|.|.||.||+|.+. |.. ||||.+....... .++|.+|+.
T Consensus 47 ~~iG~G~~g~V~~~~~~-g~~~vavK~~~~~~~~~~~~~~f~~E~~ 91 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWR-GTDVVAVKIISDPDFDDESRKAFRREAS 91 (362)
T ss_pred hhcccCCceeEEEEEeC-CceeEEEEEecchhcChHHHHHHHHHHH
Confidence 36999999999999995 455 9999996543222 468999875
No 21
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=97.09 E-value=0.0014 Score=55.15 Aligned_cols=52 Identities=35% Similarity=0.498 Sum_probs=38.9
Q ss_pred cCHHHHHHHhhhhhhhccccccccEEEEEc--CCCc--EEEEEEeccCCcc-cHHHHHHHHh
Q 031038 109 YAYKDIQKATQNFTNILGQGAFGPVYKATM--PSGG--VAAIKVLASDSHQ-GEKEFQTEVR 165 (167)
Q Consensus 109 ~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l--~~g~--~vavk~l~~~~~~-~~~~F~~e~~ 165 (167)
+..++|.... +||+|.||.|++|.| ++|. .||||+|+..... ...+|++|+.
T Consensus 107 Ipee~i~l~e-----~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas 163 (1039)
T KOG0199|consen 107 IPEEQIKLYE-----LLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREAS 163 (1039)
T ss_pred ccHHHHHHHH-----HhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHH
Confidence 4555554333 899999999999999 4555 5799999876544 4588999874
No 22
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00075 Score=54.67 Aligned_cols=44 Identities=39% Similarity=0.608 Sum_probs=33.9
Q ss_pred hhccccccccEEEEEcC--CC--cE-EEEEEecc---CCcccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATMP--SG--GV-AAIKVLAS---DSHQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~--~g--~~-vavk~l~~---~~~~~~~~F~~e~~~ 166 (167)
..||+|+||.||+|.+. ++ .. ||||..+. ..+....+|++|.++
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArv 214 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARV 214 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHH
Confidence 58999999999999993 33 23 89999975 334556899999864
No 23
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.99 E-value=0.00094 Score=52.51 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=31.7
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEeccC--CcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLASD--SHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~~--~~~~~~~F~~e~~ 165 (167)
.||+|.|+.||+|.. ..+..||||.+... .+...+....|+.
T Consensus 17 ~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~ 61 (429)
T KOG0595|consen 17 EIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIK 61 (429)
T ss_pred hccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHH
Confidence 699999999999999 46789999999543 3444455555554
No 24
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=96.97 E-value=0.00086 Score=49.85 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=34.1
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
..||+|.||.||+|.. .++..|++|.+........+.|.+|+++
T Consensus 14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~ 58 (268)
T cd06624 14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIAL 58 (268)
T ss_pred EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHH
Confidence 6899999999999986 4677899999865544445677777643
No 25
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=96.82 E-value=0.027 Score=43.86 Aligned_cols=43 Identities=33% Similarity=0.548 Sum_probs=32.6
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
+.||+|.||.||++.. .+|..||+|.+..... .....|.+|++
T Consensus 80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~ 124 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIE 124 (353)
T ss_pred hhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHH
Confidence 4899999999999987 4688999999954322 22356777765
No 26
>PHA02988 hypothetical protein; Provisional
Probab=96.71 E-value=0.0021 Score=48.55 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCCccCHHHHHHHhhhhhhhccccccccEEEEEcCCCcEEEEEEeccCCccc---HHHHHHHHh
Q 031038 105 GIPRYAYKDIQKATQNFTNILGQGAFGPVYKATMPSGGVAAIKVLASDSHQG---EKEFQTEVR 165 (167)
Q Consensus 105 ~~~~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~---~~~F~~e~~ 165 (167)
+...++.+++...+. ..+++|+++.||+|.+ +|..||||.++...... .+.|.+|+.
T Consensus 11 ~~~~i~~~~i~~~~~---~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~ 70 (283)
T PHA02988 11 DIKCIESDDIDKYTS---VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIK 70 (283)
T ss_pred cceecCHHHcCCCCC---eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHH
Confidence 445667777743322 3889999999999999 67899999996543322 356777764
No 27
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.0025 Score=49.42 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=27.7
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCccc
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQG 156 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~ 156 (167)
+++|.|.||.||+|.+. .+..||||+.-.+.+..
T Consensus 30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k 64 (364)
T KOG0658|consen 30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK 64 (364)
T ss_pred EEEeecccceEEEEEEcCCCceeEEEEecCCCCcC
Confidence 48999999999999994 46899999986554443
No 28
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0029 Score=52.00 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=37.2
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc---CCcccHHHHHHHHhhC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS---DSHQGEKEFQTEVRAH 167 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~---~~~~~~~~F~~e~~~~ 167 (167)
++||+|+|+.||.++- ..|..+|+|.+.. ......+...+||++|
T Consensus 24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIH 72 (592)
T KOG0575|consen 24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIH 72 (592)
T ss_pred eeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHH
Confidence 5899999999999987 8899999999954 2234457788999886
No 29
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=96.61 E-value=0.0025 Score=32.85 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.4
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
.++++++++|.+++++.++.-.+|+++.++.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~~~k 37 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHRRQK 37 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 46788999999999999999999999888655
No 30
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=96.61 E-value=0.00064 Score=39.32 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=0.4
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
+.+++++|+|+++++++++++++++..|.|+|.
T Consensus 8 ~~vlaavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 8 SEVLAAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -----------------------------S---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445677777777766655544444443433433
No 31
>PTZ00284 protein kinase; Provisional
Probab=96.39 E-value=0.019 Score=46.59 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=28.1
Q ss_pred Hhhhhh--hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 117 ATQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 117 ~~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
.+..|. ..||+|+||.||++.. ..+..||||.++.
T Consensus 127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 344554 6899999999999987 4577899999964
No 32
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.0034 Score=46.43 Aligned_cols=54 Identities=31% Similarity=0.427 Sum_probs=36.5
Q ss_pred ccCHHHHHHHhhhhhhhccccccccEEEEEcC-CCcEEEEEEecc---CCcccHHHHHHHHhh
Q 031038 108 RYAYKDIQKATQNFTNILGQGAFGPVYKATMP-SGGVAAIKVLAS---DSHQGEKEFQTEVRA 166 (167)
Q Consensus 108 ~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l~-~g~~vavk~l~~---~~~~~~~~F~~e~~~ 166 (167)
.++++++ +....||+|.||.||.|... ++-.||+|.+.. ...+-...+.+||++
T Consensus 18 ~~~l~df-----eigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEI 75 (281)
T KOG0580|consen 18 TWTLDDF-----EIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEI 75 (281)
T ss_pred ccchhhc-----cccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEe
Confidence 4555554 22368999999999999994 567899999832 112224567777654
No 33
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.30 E-value=0.0065 Score=47.95 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.8
Q ss_pred hhccccccccEEEEEcC--CCcEEEEEEeccC-----CcccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATMP--SGGVAAIKVLASD-----SHQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~--~g~~vavk~l~~~-----~~~~~~~F~~e~~~ 166 (167)
..||+|.||.||+|... ++..+|||++... .......|.+|+++
T Consensus 24 ~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~i 74 (365)
T PRK09188 24 AVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRA 74 (365)
T ss_pred cEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHH
Confidence 58999999999999873 5777899987532 11124557777754
No 34
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=96.25 E-value=0.014 Score=41.47 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=6.2
Q ss_pred ceeehhhHHHHHH
Q 031038 7 LVIIGICVGLALG 19 (167)
Q Consensus 7 ~~ii~ii~g~~~~ 19 (167)
+++++|+++++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3455555554443
No 35
>PF15102 TMEM154: TMEM154 protein family
Probab=96.19 E-value=0.0085 Score=40.67 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=7.6
Q ss_pred CCCCCccCHHHHHH
Q 031038 103 ASGIPRYAYKDIQK 116 (167)
Q Consensus 103 ~~~~~~~~~~~l~~ 116 (167)
..+...+..++|-.
T Consensus 119 tpsvmeiEmeeldk 132 (146)
T PF15102_consen 119 TPSVMEIEMEELDK 132 (146)
T ss_pred CcchhhhhHHHHHh
Confidence 33445566666643
No 36
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=96.18 E-value=0.0089 Score=44.08 Aligned_cols=42 Identities=38% Similarity=0.560 Sum_probs=33.9
Q ss_pred hccccccccEEEEEcCCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMPSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|+||.||+|...++..+++|.+.........+|..|+.
T Consensus 13 ~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~ 54 (261)
T cd05148 13 KLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQ 54 (261)
T ss_pred hhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHH
Confidence 899999999999999888999999997654434556776654
No 37
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.16 E-value=0.0081 Score=47.85 Aligned_cols=42 Identities=33% Similarity=0.621 Sum_probs=30.7
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCcc-cHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQ-GEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~-~~~~F~~e~ 164 (167)
..||+|.||.||+|... .+..||+|.++..... ..++..+|+
T Consensus 19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei 62 (467)
T KOG0201|consen 19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEI 62 (467)
T ss_pred hhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHH
Confidence 38999999999999984 4678999999764432 234555544
No 38
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=96.07 E-value=0.011 Score=46.49 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=31.2
Q ss_pred hhccccccccEEEEEc------CCCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM------PSGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l------~~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.. ..+..||||.++... ....+.|.+|+.
T Consensus 41 ~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~ 90 (375)
T cd05104 41 KTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELK 90 (375)
T ss_pred heecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHH
Confidence 5999999999999974 335589999996532 223456777764
No 39
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=96.03 E-value=0.011 Score=45.83 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEc------CCCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM------PSGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l------~~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
..||+|+||.||+|.. ..+..||||.++.... .....+..|+.
T Consensus 13 ~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~ 62 (343)
T cd05103 13 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELK 62 (343)
T ss_pred ccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHH
Confidence 4899999999999973 3567899999965332 22345666654
No 40
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=95.97 E-value=0.014 Score=47.94 Aligned_cols=43 Identities=33% Similarity=0.578 Sum_probs=33.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
.+||+|-||.||-|.- ..|+.||||.++... .++++...+|+.
T Consensus 570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVa 615 (888)
T KOG4236|consen 570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVA 615 (888)
T ss_pred hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHH
Confidence 7899999999999988 579999999996643 334556666664
No 41
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=95.96 E-value=0.013 Score=46.71 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=31.4
Q ss_pred hhccccccccEEEEEcC------CCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP------SGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|+.. .+..||||.++.... ...+.|..|++
T Consensus 43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~ 92 (400)
T cd05105 43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELK 92 (400)
T ss_pred heecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHH
Confidence 58999999999999852 234699999965432 23456888775
No 42
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=95.94 E-value=0.019 Score=46.53 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.4
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
+.++.|++|.||+|++.+|..||||..++.
T Consensus 123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~ 152 (437)
T TIGR01982 123 KPLAAASIAQVHRARLVDGKEVAVKVLRPG 152 (437)
T ss_pred cceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence 579999999999999999999999998654
No 43
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=95.92 E-value=0.017 Score=42.73 Aligned_cols=43 Identities=30% Similarity=0.507 Sum_probs=31.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||+|.||.||+|.. .++..+|+|.+..........+.+|+.
T Consensus 15 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~ 58 (267)
T cd06646 15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIF 58 (267)
T ss_pred heeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHH
Confidence 4899999999999997 577889999996543333345555553
No 44
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=95.92 E-value=0.011 Score=45.16 Aligned_cols=42 Identities=40% Similarity=0.582 Sum_probs=30.5
Q ss_pred hccccccccEEEEEcC-CCc----EEEEEEeccCC-cccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMP-SGG----VAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~----~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.||+|+||.||+|.+. ++. .||+|.++... ....++|..|+.
T Consensus 14 ~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~ 61 (316)
T cd05108 14 VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61 (316)
T ss_pred eeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHH
Confidence 8999999999999873 333 38999996543 233467777764
No 45
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=95.92 E-value=0.007 Score=46.70 Aligned_cols=43 Identities=33% Similarity=0.575 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEc------CCCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM------PSGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l------~~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
..||+|+||.||+|.. ..+..||||.++.... .....|..|++
T Consensus 13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~ 62 (338)
T cd05102 13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELK 62 (338)
T ss_pred eEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHH
Confidence 4899999999999974 2346799999965332 22356777764
No 46
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=95.92 E-value=0.0092 Score=49.94 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=32.9
Q ss_pred hhhhccccccccEEEEEcCC---C--cEEEEEEeccCCc-ccHHHHHHHH
Q 031038 121 FTNILGQGAFGPVYKATMPS---G--GVAAIKVLASDSH-QGEKEFQTEV 164 (167)
Q Consensus 121 f~~~lg~g~~g~vy~g~l~~---g--~~vavk~l~~~~~-~~~~~F~~e~ 164 (167)
...+||+|-||.||+|++.+ | .-||||.-+.++. .+.+.|++|.
T Consensus 393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa 442 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEA 442 (974)
T ss_pred HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHH
Confidence 34599999999999999933 2 3589998876553 3457798886
No 47
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=95.82 E-value=0.027 Score=43.87 Aligned_cols=54 Identities=28% Similarity=0.471 Sum_probs=39.9
Q ss_pred ccCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEeccCC-cccHHHHHHHHhh
Q 031038 108 RYAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLASDS-HQGEKEFQTEVRA 166 (167)
Q Consensus 108 ~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~-~~~~~~F~~e~~~ 166 (167)
.+++.||+... .||+|+.|.|||... +.+...|+|.+..+. ....++..+|+++
T Consensus 75 ~i~~~dle~~~-----~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~i 130 (364)
T KOG0581|consen 75 GISLSDLERLG-----VLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEI 130 (364)
T ss_pred ccCHHHhhhhh-----hcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHH
Confidence 46667776544 999999999999998 467788999994433 3335677777754
No 48
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=95.81 E-value=0.019 Score=45.92 Aligned_cols=43 Identities=35% Similarity=0.507 Sum_probs=31.4
Q ss_pred hhccccccccEEEEEcC------CCcEEEEEEeccCCcc-cHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP------SGGVAAIKVLASDSHQ-GEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~~~-~~~~F~~e~~ 165 (167)
..||+|+||.||+|... .+..||+|.++..... ....|..|++
T Consensus 43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~ 92 (401)
T cd05107 43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELK 92 (401)
T ss_pred hhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999863 3357999999654322 2346777765
No 49
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=95.81 E-value=0.013 Score=35.99 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=21.4
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecccCcccC
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKHDHFRRC 42 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~ 42 (167)
+.-+++-..++++++++++++.+.||++|+|.+.+.
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 344555566666666666666666666666665443
No 50
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=95.76 E-value=0.01 Score=50.54 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=20.5
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheecccCc
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHDHF 39 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~ 39 (167)
.+.+|+.|.++++++++++++|+||||+.+.+
T Consensus 274 fLl~ILG~~~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 274 FLLAILGGTALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 34566666666666667777777777654443
No 51
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=95.76 E-value=0.011 Score=35.70 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=23.8
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
++.++++||++|-+++-++|++..+++-|.|+|+.
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~ 65 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT 65 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 46678889998888766766666666655554444
No 52
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=95.74 E-value=0.011 Score=49.14 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=20.2
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 5 SDLVIIGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
..|+|+|+++.+++++++++++.+++||+.|
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 4588899887777766665555555555443
No 53
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=95.51 E-value=0.02 Score=40.86 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=26.3
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
+.||+|+||.||++...+|..||||.++.
T Consensus 21 ~~i~~G~~g~Vy~~~~~~g~~vavK~~~~ 49 (198)
T cd05144 21 NQIGVGKESDVYLALDPDGNPVALKFHRL 49 (198)
T ss_pred CccccCcceEEEEEEcCCCCEEEEEEEec
Confidence 68999999999999998899999998753
No 54
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=95.51 E-value=0.022 Score=42.52 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=32.2
Q ss_pred hhccccccccEEEEEcCC-----CcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS-----GGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-----g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
++||+|.||.||+|...+ +..|++|.+.... ....+.|..|+.
T Consensus 12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~ 60 (280)
T cd05043 12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESC 60 (280)
T ss_pred eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 489999999999999855 6789999986543 223456766654
No 55
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.51 E-value=0.04 Score=31.72 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=27.1
Q ss_pred CcCCcceeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 2 VHKSDLVIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 2 ~~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+++++++|+.++++-+++++++.-.+++.++++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999998888888887777777655
No 56
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=95.44 E-value=0.033 Score=42.14 Aligned_cols=42 Identities=31% Similarity=0.395 Sum_probs=32.6
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|.||.||++.. .++..+++|.+..........|.+|+.
T Consensus 27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~ 69 (292)
T cd06657 27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVV 69 (292)
T ss_pred HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHH
Confidence 789999999999988 578899999986544334456777764
No 57
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.42 E-value=0.026 Score=46.35 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=31.4
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~ 164 (167)
+.||+|+||.||++.. .+|..+|||.++... ......+..|+
T Consensus 38 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei 82 (496)
T PTZ00283 38 RVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEV 82 (496)
T ss_pred EEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 5899999999999976 578999999985432 22334566665
No 58
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=95.39 E-value=0.041 Score=42.66 Aligned_cols=43 Identities=30% Similarity=0.330 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|.. ..|..+|+|.+.... ......+..|+.
T Consensus 21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~ 66 (342)
T cd07879 21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELT 66 (342)
T ss_pred EEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHH
Confidence 6899999999999986 468899999985421 112244555553
No 59
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=95.38 E-value=0.014 Score=42.03 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=18.8
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhhe
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
..+++||++|++.++++|++..++.|||
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3578888888887666666665555343
No 60
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.36 E-value=0.087 Score=44.32 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=27.0
Q ss_pred hhhccccccccEEEEEcC-CCcEEEEEEeccCC
Q 031038 122 TNILGQGAFGPVYKATMP-SGGVAAIKVLASDS 153 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~ 153 (167)
..+||+|+||.|+.+.+. ++...|||.|+...
T Consensus 373 l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~ 405 (694)
T KOG0694|consen 373 LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD 405 (694)
T ss_pred EEEeccCcCceEEEEEEcCCCcEEEEEEeeccc
Confidence 379999999999999994 56788999997644
No 61
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=0.025 Score=43.05 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=36.8
Q ss_pred ccCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEecc--CCcccHHHHHHHHh
Q 031038 108 RYAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLAS--DSHQGEKEFQTEVR 165 (167)
Q Consensus 108 ~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~--~~~~~~~~F~~e~~ 165 (167)
+-++++.+... .||.|.||.|||+.- .+|..+|.|.++- .+.+...+...|+.
T Consensus 15 ~~~l~~y~Il~-----~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~ 70 (375)
T KOG0591|consen 15 QKTLADYQILK-----KIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEIS 70 (375)
T ss_pred cccHHHHHHHH-----HHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHH
Confidence 44555443333 899999999999964 7899999999853 33444456666653
No 62
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.33 E-value=0.016 Score=43.30 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=34.6
Q ss_pred HHHHHHhhhhh--hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 112 KDIQKATQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 112 ~~l~~~~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
+.+..+..+|. ..||+|.||.||++.. ..+..+++|.++.... ...++..|+
T Consensus 11 ~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~ 65 (286)
T cd06638 11 DSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEY 65 (286)
T ss_pred ecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHH
Confidence 34444444444 6899999999999987 4678899998865321 234455554
No 63
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.33 E-value=0.033 Score=45.34 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=26.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
..||+|.||.||++.= ..|..||+|++.-.
T Consensus 123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d 153 (560)
T KOG0600|consen 123 EKIGEGTYGQVYKARDLETGKIVALKKVRFD 153 (560)
T ss_pred HHhcCcchhheeEeeecccCcEEEEEEeecc
Confidence 5899999999999964 67899999999543
No 64
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.32 E-value=0.035 Score=41.47 Aligned_cols=54 Identities=30% Similarity=0.589 Sum_probs=35.3
Q ss_pred CHHHHHHHhhhhh--hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 110 AYKDIQKATQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 110 ~~~~l~~~~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
++.++..+...|. ..+|.|.||.||+|.. .++..+|+|.+.... ....++..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~ 63 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEI 63 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHH
Confidence 3344434444443 6899999999999998 467889999885432 2234455544
No 65
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.31 E-value=0.0063 Score=40.26 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.8
Q ss_pred hhh-hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 120 NFT-NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 120 ~f~-~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
.|. .-++.++.|.||+|++.+|+.||||...+.
T Consensus 13 ~fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~ 46 (119)
T PF03109_consen 13 EFDPEPLASASIAQVHRARLKDGEEVAVKVQRPG 46 (119)
T ss_pred HCCcchhhheehhhheeeeecccchhhhhhcchH
Confidence 444 689999999999999999999999998664
No 66
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=95.29 E-value=0.036 Score=41.39 Aligned_cols=42 Identities=45% Similarity=0.760 Sum_probs=30.0
Q ss_pred hhccccccccEEEEEc-CCCc----EEEEEEeccCCc-ccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGG----VAAIKVLASDSH-QGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~----~vavk~l~~~~~-~~~~~F~~e~ 164 (167)
+.||+|+||.||+|.. ++|. .||+|.++.... ...++|..|+
T Consensus 13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~ 60 (279)
T cd05109 13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEA 60 (279)
T ss_pred eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHH
Confidence 3899999999999986 4554 479999865432 2345666665
No 67
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=95.28 E-value=0.026 Score=38.05 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhheecccCc
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRWYKKHDHF 39 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~ 39 (167)
++..+|.||+.|+++++.+++.+++|+|..-++.+.
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~icvCmc~kn~rg 93 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIAICVCMCMKNSRG 93 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHHHHHhhhhhcCCC
Confidence 567789999999998888887777777655444433
No 68
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.26 E-value=0.036 Score=43.71 Aligned_cols=43 Identities=33% Similarity=0.511 Sum_probs=30.7
Q ss_pred hhccccccccEEEEEc------CCCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM------PSGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l------~~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
+.||+|+||.||++.. .++..||+|.++.... .....|..|++
T Consensus 44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~ 93 (374)
T cd05106 44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELK 93 (374)
T ss_pred heecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHH
Confidence 5899999999999874 2345799999965432 22355667764
No 69
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=95.25 E-value=0.03 Score=43.50 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=38.9
Q ss_pred CHHHHHHHhhhhh--hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 110 AYKDIQKATQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 110 ~~~~l~~~~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
...++...+.+|. ..||+|+||.||++.. .+|..||+|+++... ....+.+.+|++
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~ 68 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELR 68 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHH
Confidence 3345555666665 6899999999999986 578899999996422 222345666654
No 70
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=95.21 E-value=0.04 Score=41.45 Aligned_cols=43 Identities=40% Similarity=0.674 Sum_probs=33.7
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||.|.||.||+|... ++..+++|.+........++|..|+.
T Consensus 18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~ 61 (292)
T cd06644 18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIE 61 (292)
T ss_pred heecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHH
Confidence 38999999999999884 47889999997654444567777764
No 71
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=95.20 E-value=0.011 Score=49.77 Aligned_cols=43 Identities=30% Similarity=0.592 Sum_probs=33.4
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|+- ..|..||||..+... ....+....|++
T Consensus 19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Eie 63 (732)
T KOG4250|consen 19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIE 63 (732)
T ss_pred hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHH
Confidence 3899999999999994 679999999997644 333456666665
No 72
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.20 E-value=0.013 Score=49.16 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=34.3
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.||-|-||.||.|+|. -...||||.|+.+ ....++|+.|..
T Consensus 273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAA 315 (1157)
T KOG4278|consen 273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAA 315 (1157)
T ss_pred eccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHH
Confidence 78999999999999994 3568999999765 345688988763
No 73
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=95.17 E-value=0.052 Score=40.14 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=31.3
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
..||+|.||.||++.. .++..+|+|.++.........+.+|+
T Consensus 15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~ 57 (267)
T cd06645 15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEI 57 (267)
T ss_pred HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHH
Confidence 4899999999999987 46789999998654333334555555
No 74
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=95.17 E-value=0.011 Score=35.81 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=11.8
Q ss_pred ccCHHHHHHHhhhhhhhc
Q 031038 108 RYAYKDIQKATQNFTNIL 125 (167)
Q Consensus 108 ~~~~~~l~~~~~~f~~~l 125 (167)
..+++|-..+-.+|...|
T Consensus 56 P~TYEDP~qAV~eFAkEI 73 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAKEI 73 (75)
T ss_dssp GGGSSSHHHHHHHCSSB-
T ss_pred cccccCHHHHHHHHHhhc
Confidence 457777777777776443
No 75
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=95.16 E-value=0.018 Score=48.13 Aligned_cols=29 Identities=41% Similarity=0.657 Sum_probs=25.3
Q ss_pred hhccccccccEEEEEcC-C----CcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMP-S----GGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~----g~~vavk~l~~ 151 (167)
+.||+|+||.||+|... + +..+|+|++..
T Consensus 138 ~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 138 KKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred EEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 78999999999999985 4 67899999854
No 76
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=95.14 E-value=0.019 Score=43.19 Aligned_cols=44 Identities=30% Similarity=0.604 Sum_probs=34.4
Q ss_pred cCHHHHHHHhhhhh--hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 109 YAYKDIQKATQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 109 ~~~~~l~~~~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
+++.++..++.+|. ..||+|.||.||++.. .++..+|+|.+...
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~ 58 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI 58 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc
Confidence 45556666666775 7899999999999988 56788999998643
No 77
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=95.14 E-value=0.041 Score=41.85 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=30.3
Q ss_pred hccccccccEEEEEcC-CCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMP-SGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.||+|+||.||+|... .+..+|+|.++... ......+.+|++
T Consensus 13 ~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~ 56 (309)
T cd07872 13 KLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVS 56 (309)
T ss_pred EecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHH
Confidence 8999999999999874 56789999986432 222344555553
No 78
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=95.07 E-value=0.055 Score=40.09 Aligned_cols=41 Identities=37% Similarity=0.703 Sum_probs=30.3
Q ss_pred hccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|.||.||+|... .+..+|+|.++... ....++..|+.
T Consensus 13 ~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~ 54 (272)
T cd06637 13 LVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEIN 54 (272)
T ss_pred heeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHH
Confidence 7999999999999884 57789999986432 23345655553
No 79
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=95.06 E-value=0.031 Score=43.14 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=25.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
+.+|+|.||.||+|.- ..|..||+|++...
T Consensus 17 eklGeGtyg~Vykar~~~~g~~VALKkirl~ 47 (323)
T KOG0594|consen 17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLE 47 (323)
T ss_pred HHhCCCCceEEEEEEEecCCCEEEEEEEecc
Confidence 3799999999999987 57789999999654
No 80
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=95.03 E-value=0.054 Score=41.01 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=32.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- .++..+|+|.+........+.|..|+.
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~ 68 (297)
T cd06656 25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEIL 68 (297)
T ss_pred eeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHH
Confidence 5899999999999986 578899999996543333455666654
No 81
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=95.01 E-value=0.056 Score=40.97 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=32.1
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|+||.||++.. .++..+++|.++.......+.|.+|+.
T Consensus 28 ~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~ 70 (297)
T cd06659 28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVV 70 (297)
T ss_pred hcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHH
Confidence 789999999999987 468899999996543334456666653
No 82
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=94.99 E-value=0.027 Score=41.56 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=27.5
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~ 153 (167)
..||+|+||.||++...++..+|+|.+....
T Consensus 12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~ 42 (260)
T cd05067 12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS 42 (260)
T ss_pred eeeccCccceEEeeecCCCceEEEEEecCCC
Confidence 5899999999999999888999999996533
No 83
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=94.92 E-value=0.055 Score=40.03 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=33.0
Q ss_pred hhhhccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 121 FTNILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 121 f~~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.+.||+|.||.||+|... .+..+++|.++.. .....+|.+|++
T Consensus 10 ~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~ 54 (263)
T cd05052 10 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAA 54 (263)
T ss_pred EeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHH
Confidence 3448999999999999984 4778999998643 233456777764
No 84
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.83 E-value=0.049 Score=45.56 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=29.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEK 158 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~ 158 (167)
..||.|+||.||-+.- .+...||+|++.-..++..+
T Consensus 32 rEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~E 68 (948)
T KOG0577|consen 32 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE 68 (948)
T ss_pred HHhcCCccceeEEeeccCccceeeeeeccccccccHH
Confidence 4899999999999876 46678999999776555543
No 85
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=94.72 E-value=0.026 Score=43.85 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=25.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
|.|++|.||.||+|.= ..+..||+|+++-.
T Consensus 82 nrI~EGtyGiVYRakdk~t~eIVALKr~kme 112 (419)
T KOG0663|consen 82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKME 112 (419)
T ss_pred hhcccCcceeEEEeccCCcceeEEeeecccc
Confidence 5899999999999987 45678999999654
No 86
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=94.67 E-value=0.043 Score=42.53 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=29.5
Q ss_pred hhccccccccEEEEEcC------CCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP------SGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|... .+..||+|+++.... .....+..|+.
T Consensus 13 ~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~ 62 (337)
T cd05054 13 KPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELK 62 (337)
T ss_pred cccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHH
Confidence 38999999999999752 246899999965322 22345555654
No 87
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=94.66 E-value=0.076 Score=41.03 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- ..+..||||.+.... ......+.+|++
T Consensus 21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~ 66 (343)
T cd07878 21 TPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELR 66 (343)
T ss_pred eecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHH
Confidence 5899999999999986 467889999986422 122345556654
No 88
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=94.60 E-value=0.074 Score=40.38 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=30.6
Q ss_pred hhhccccccccEEEEEcC-CCc--EEEEEEeccCC-cccHHHHHHHHh
Q 031038 122 TNILGQGAFGPVYKATMP-SGG--VAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~-~g~--~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.+.||+|+||.||++... ++. .+++|.++... .....+|.+|++
T Consensus 12 ~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~ 59 (303)
T cd05088 12 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 59 (303)
T ss_pred eeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHH
Confidence 368999999999999974 444 45888876432 233456777764
No 89
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=94.53 E-value=0.087 Score=39.69 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
+.+|+|.||.||+|... +|..+++|.++... ......+.+|++
T Consensus 13 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~ 58 (302)
T cd07864 13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIK 58 (302)
T ss_pred eeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHH
Confidence 38999999999999984 57899999996432 122244555553
No 90
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.45 E-value=0.093 Score=39.71 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=32.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..+|+|.||.||+|.- .++..+++|.+........+.|.+|+.
T Consensus 26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~ 69 (296)
T cd06654 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEIL 69 (296)
T ss_pred EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHH
Confidence 4799999999999985 567899999996544444456766654
No 91
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=94.44 E-value=0.082 Score=39.96 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=32.1
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|+||.||++.. .++..+|+|.++.......+.|.+|+.
T Consensus 29 ~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~ 71 (292)
T cd06658 29 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVV 71 (292)
T ss_pred cccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHH
Confidence 789999999999987 467899999986544344456777654
No 92
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.42 E-value=0.058 Score=41.61 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=31.5
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCC---cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDS---HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~---~~~~~~F~~e~~ 165 (167)
+.||+|.||.||++... ++..+|+|.++... ....+.|.+|+.
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~ 70 (329)
T PTZ00263 24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKS 70 (329)
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHH
Confidence 58999999999999984 57899999985421 122345666654
No 93
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=94.39 E-value=0.071 Score=39.76 Aligned_cols=43 Identities=35% Similarity=0.523 Sum_probs=31.8
Q ss_pred hhccccccccEEEEEcCC------CcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS------GGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~------g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|...+ +..|++|.+.... .....+|..|+.
T Consensus 12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~ 61 (277)
T cd05036 12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEAL 61 (277)
T ss_pred eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999853 4578999886543 233456887764
No 94
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.33 E-value=0.07 Score=41.44 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=41.5
Q ss_pred ccCHHHHHHHhhhhhhhccccccccEEEEE-cCCCcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 108 RYAYKDIQKATQNFTNILGQGAFGPVYKAT-MPSGGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 108 ~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~-l~~g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
.-+++|+-..|.+ +||+|+++.|-..+ +..|...|||.++......+....+|+++
T Consensus 72 ~g~F~d~YkLt~e---~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~ 128 (463)
T KOG0607|consen 72 SGKFEDMYKLTSE---LLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVET 128 (463)
T ss_pred cchHHHHHHhHHH---HhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHH
Confidence 3457888777766 99999999987554 46788999999977644455666666654
No 95
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.28 E-value=0.083 Score=40.87 Aligned_cols=43 Identities=33% Similarity=0.641 Sum_probs=31.4
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.||+|.||.||.+... +|...|||..........+.+.+|+.
T Consensus 23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~ 66 (313)
T KOG0198|consen 23 KLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIR 66 (313)
T ss_pred ccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHH
Confidence 48999999999999995 48899999996543222344555543
No 96
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.24 E-value=0.04 Score=43.32 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=30.7
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccC---CcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASD---SHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~---~~~~~~~F~~e~~ 165 (167)
..||+|.||.||++... .+..+|+|.++.. .......|..|++
T Consensus 49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~ 95 (370)
T cd05596 49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERD 95 (370)
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHH
Confidence 68999999999999874 5789999999532 1222344556653
No 97
>smart00090 RIO RIO-like kinase.
Probab=94.21 E-value=0.062 Score=39.85 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=26.2
Q ss_pred hhccccccccEEEEE--cCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKAT--MPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~--l~~g~~vavk~l~~ 151 (167)
..||+|.||.||+|. ..+|..||+|.++.
T Consensus 34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 34 GCISTGKEANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred CeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence 689999999999998 67899999999864
No 98
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.21 E-value=0.09 Score=40.99 Aligned_cols=43 Identities=28% Similarity=0.196 Sum_probs=31.4
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- ..|..+|+|.+.... ......+.+|+.
T Consensus 27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~ 72 (359)
T cd07876 27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELV 72 (359)
T ss_pred EEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHH
Confidence 5899999999999986 457899999995421 222355666654
No 99
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=94.19 E-value=0.1 Score=39.37 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=32.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||+|.||.||++.- .++..+++|.++.......+.|..|+.
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~ 68 (293)
T cd06647 25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEIL 68 (293)
T ss_pred eEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHH
Confidence 4799999999999985 467889999986543333456666653
No 100
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=94.17 E-value=0.1 Score=39.21 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=32.6
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.||+|.+|.||++.. .++..+++|.++.......+.|.+|+.
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~ 68 (285)
T cd06648 25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVV 68 (285)
T ss_pred eEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHH
Confidence 4899999999999986 467899999986544334455666653
No 101
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=94.06 E-value=0.0077 Score=38.86 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031038 15 GLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 15 g~~~~v~~i~~~~~~~~~~r 34 (167)
|++++++.+++++-||++||
T Consensus 30 GiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp S-------------------
T ss_pred eeHHHHHHHHHHHhheeeee
Confidence 33444444444555555444
No 102
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=94.04 E-value=0.081 Score=39.23 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=31.3
Q ss_pred hhccccccccEEEEEcCCC----cEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSG----GVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g----~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|+||.||+|...+. ..+++|...... ....+.|.+|+.
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~ 59 (270)
T cd05056 12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAY 59 (270)
T ss_pred eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHH
Confidence 4899999999999987432 468999886543 333467877764
No 103
>PTZ00036 glycogen synthase kinase; Provisional
Probab=94.03 E-value=0.075 Score=42.92 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=25.3
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|+||.||+|.. ..+..||||++..
T Consensus 72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~ 101 (440)
T PTZ00036 72 NIIGNGSFGVVYEAICIDTSEKVAIKKVLQ 101 (440)
T ss_pred EEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence 6899999999999987 4678999999854
No 104
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=93.96 E-value=0.064 Score=42.25 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=30.5
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccC---CcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASD---SHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~---~~~~~~~F~~e~~ 165 (167)
+.||+|+||.||++... ++..+|+|.++.. .......|.+|++
T Consensus 49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~ 95 (370)
T cd05621 49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERD 95 (370)
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHH
Confidence 68999999999999884 5778999998531 1122344656654
No 105
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.95 E-value=0.12 Score=39.33 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=31.5
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCc---ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSH---QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~---~~~~~F~~e~~ 165 (167)
+.||+|.||.||+|... ++..|++|.+..... ....+|..|++
T Consensus 21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~ 67 (307)
T cd06607 21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVR 67 (307)
T ss_pred eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHH
Confidence 48999999999999874 678999999854322 22345766654
No 106
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=93.94 E-value=0.12 Score=38.99 Aligned_cols=42 Identities=26% Similarity=0.489 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccCC-cccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASDS-HQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~~-~~~~~~F~~e~ 164 (167)
..||+|.||.||++...+ +..+|||.++... .....++..|+
T Consensus 21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~ 64 (296)
T cd06618 21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDL 64 (296)
T ss_pred eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHH
Confidence 589999999999999964 8899999996432 22234455444
No 107
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=93.93 E-value=0.11 Score=38.88 Aligned_cols=42 Identities=36% Similarity=0.555 Sum_probs=28.2
Q ss_pred hhccccccccEEEEEc-CCCc----EEEEEEeccCCc-ccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGG----VAAIKVLASDSH-QGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~----~vavk~l~~~~~-~~~~~F~~e~ 164 (167)
+.||+|+||.||+|.+ +++. .+++|.+..... ....+|..|+
T Consensus 13 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 60 (279)
T cd05111 13 KLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHM 60 (279)
T ss_pred cccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHH
Confidence 4899999999999997 3444 478888754322 2234565554
No 108
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=93.90 E-value=0.17 Score=35.80 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=16.4
Q ss_pred ceeehhhHHHHHHHHHHHHHHHh
Q 031038 7 LVIIGICVGLALGILIATLVFFG 29 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~ 29 (167)
.++++|++|+++++++|++++++
T Consensus 75 ~~~~~iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 75 YFITGIIVGVICGVIAIVVLIVC 97 (179)
T ss_pred cceeeeeeehhhHHHHHHHhHhh
Confidence 35788999998877776554443
No 109
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=93.90 E-value=0.047 Score=40.29 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.6
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
..||+|++|.||+|...++..+|+|.++..
T Consensus 12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~ 41 (261)
T cd05068 12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPG 41 (261)
T ss_pred EEecccCCccEEEEEecCCeEEEEEeeCCC
Confidence 689999999999999877788999999653
No 110
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=93.89 E-value=0.076 Score=39.10 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=26.3
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
..||+|+||.||+|...++..+++|.+...
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~ 41 (261)
T cd05072 12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPG 41 (261)
T ss_pred eecCCcCCceEEEEEecCCceEEEEEccCC
Confidence 389999999999999988889999998643
No 111
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=93.85 E-value=0.078 Score=40.88 Aligned_cols=48 Identities=31% Similarity=0.333 Sum_probs=33.5
Q ss_pred hhhhh--hhccccccccEEEEEc-CCCcEEEEEEecc-CC-cccHHHHHHHHh
Q 031038 118 TQNFT--NILGQGAFGPVYKATM-PSGGVAAIKVLAS-DS-HQGEKEFQTEVR 165 (167)
Q Consensus 118 ~~~f~--~~lg~g~~g~vy~g~l-~~g~~vavk~l~~-~~-~~~~~~F~~e~~ 165 (167)
+++|. ..||+|.||.||++.- .++..+|+|.+.. .. ....+.+..|++
T Consensus 9 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~ 61 (328)
T cd07856 9 TNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELK 61 (328)
T ss_pred ccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHH
Confidence 34444 6899999999999975 4788999998843 21 223355666654
No 112
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=93.84 E-value=0.087 Score=45.10 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=35.8
Q ss_pred hhccccccccEEEEEcCCC-cEEEEEEeccCCcccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATMPSG-GVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g-~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
+.|-||+|+.||.+...++ ..+|+|++-..+....+...+|+++
T Consensus 43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~ 87 (738)
T KOG1989|consen 43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDI 87 (738)
T ss_pred EEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHH
Confidence 5899999999999999766 8999999955555556777777764
No 113
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=93.79 E-value=0.018 Score=46.60 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+++++++|+++++++++++++++.++|
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~r 379 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCR 379 (439)
T ss_dssp ---------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeeh
Confidence 445555555554444444444333333
No 114
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=93.72 E-value=0.12 Score=43.01 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=27.1
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~ 152 (167)
..++.|++|.||++++.+ |+.||||.+++.
T Consensus 125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 125 KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 579999999999999987 999999999654
No 115
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=93.70 E-value=0.12 Score=38.91 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=29.4
Q ss_pred hhccccccccEEEEEcC------CCcEEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP------SGGVAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
..||+|+||.||+|... .+..||+|.++.... ....+|.+|+.
T Consensus 12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~ 61 (288)
T cd05061 12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEAS 61 (288)
T ss_pred eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHH
Confidence 38999999999999753 245799998864332 22345666653
No 116
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=93.69 E-value=0.15 Score=38.98 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=31.2
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcc---cHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQ---GEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~---~~~~F~~e~~ 165 (167)
+.||+|.||.||++.. .++..+++|.+...... ...+|..|++
T Consensus 31 ~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~ 77 (317)
T cd06635 31 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVK 77 (317)
T ss_pred heeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHH
Confidence 4899999999999987 46789999998643221 2245666654
No 117
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=93.67 E-value=0.17 Score=37.93 Aligned_cols=42 Identities=33% Similarity=0.445 Sum_probs=32.8
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.+|+|.+|.||+|... ++..+++|.++.... ....|..|++
T Consensus 25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~ 67 (286)
T cd06614 25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEIL 67 (286)
T ss_pred HhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHH
Confidence 48999999999999995 678999999965433 4456766664
No 118
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=93.66 E-value=0.069 Score=42.03 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=25.0
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~ 151 (167)
..||+|+||.||++... .+..+|+|.+..
T Consensus 49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~ 78 (371)
T cd05622 49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 78 (371)
T ss_pred EEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence 78999999999999884 577899999853
No 119
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=93.65 E-value=0.14 Score=39.47 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=24.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
+.||+|+||.||++.- .++..+|+|.++.
T Consensus 15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~ 44 (335)
T PTZ00024 15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKI 44 (335)
T ss_pred hcccCCCceeEEEEEECCCCCeEEEEEeec
Confidence 3799999999999986 4688999999854
No 120
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=93.62 E-value=0.16 Score=38.40 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred hccccccccEEEEEcC-CCcEEEEEEeccCC-cccHHHHHHHH
Q 031038 124 ILGQGAFGPVYKATMP-SGGVAAIKVLASDS-HQGEKEFQTEV 164 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~-~~~~~~F~~e~ 164 (167)
.||+|+||.||+|... ++..||+|.++... ......+..|+
T Consensus 13 ~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 55 (301)
T cd07873 13 KLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREV 55 (301)
T ss_pred EeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHH
Confidence 7999999999999874 57789999986432 22233455554
No 121
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.60 E-value=0.16 Score=38.50 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=32.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
..||.|.+|.||+|.- .++..+++|.+........+.|.+|++
T Consensus 25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~ 68 (296)
T cd06655 25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEIL 68 (296)
T ss_pred EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHH
Confidence 4799999999999985 578899999986543334456666654
No 122
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=93.57 E-value=0.097 Score=38.50 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=26.4
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
+.||+|+||.||++...++..+++|.+...
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~ 41 (261)
T cd05034 12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPG 41 (261)
T ss_pred eeeccCcceEEEEEEEcCCceEEEEEecCC
Confidence 389999999999999988888999999653
No 123
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=93.54 E-value=0.14 Score=39.63 Aligned_cols=43 Identities=33% Similarity=0.347 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
+.||+|.||.||++.. .+|..||||.+.... ......+..|++
T Consensus 21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~ 66 (343)
T cd07880 21 KQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELR 66 (343)
T ss_pred EEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 5899999999999986 578899999985321 222345656653
No 124
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=93.50 E-value=0.12 Score=38.46 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=30.8
Q ss_pred hhhccccccccEEEEEcC------CCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 122 TNILGQGAFGPVYKATMP------SGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~------~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
.+.||+|+||.||+|... .+..+|+|.++... .....+|.+|+.
T Consensus 11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~ 61 (277)
T cd05062 11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEAS 61 (277)
T ss_pred eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHH
Confidence 348999999999998763 24579999985432 223456777764
No 125
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=93.44 E-value=0.022 Score=43.40 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhe
Q 031038 22 IATLVFFGLRWY 33 (167)
Q Consensus 22 ~i~~~~~~~~~~ 33 (167)
+++.+++|+|.|
T Consensus 160 LIA~iIa~icyr 171 (290)
T PF05454_consen 160 LIAGIIACICYR 171 (290)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhh
Confidence 333333333333
No 126
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=93.40 E-value=0.37 Score=34.83 Aligned_cols=25 Identities=12% Similarity=-0.085 Sum_probs=11.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 8 VIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
++|++++...++++++++...|+|+
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~ 125 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCH 125 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhh
Confidence 5555555553334444444434443
No 127
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=93.39 E-value=0.1 Score=39.22 Aligned_cols=43 Identities=33% Similarity=0.526 Sum_probs=30.7
Q ss_pred hhccccccccEEEEEcCC------CcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS------GGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~------g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|.||.||++...+ ...+|+|.+.... .....+|.+|++
T Consensus 18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~ 67 (293)
T cd05053 18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEME 67 (293)
T ss_pred eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHH
Confidence 589999999999998732 3578999986532 223356777764
No 128
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.38 E-value=0.17 Score=39.53 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- ..+..+|||.+.... .....++.+|+.
T Consensus 30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~ 75 (364)
T cd07875 30 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELV 75 (364)
T ss_pred EEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHH
Confidence 5899999999999986 457889999996422 222345655553
No 129
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=93.36 E-value=0.2 Score=43.23 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=23.7
Q ss_pred hhcccccccc-EEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGP-VYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~-vy~g~l~~g~~vavk~l~~~ 152 (167)
+++|.|.-|+ ||+|++ +|+.||||++-..
T Consensus 515 eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e 544 (903)
T KOG1027|consen 515 EILGYGSNGTVVFRGVY-EGREVAVKRLLEE 544 (903)
T ss_pred HHcccCCCCcEEEEEee-CCceehHHHHhhH
Confidence 4788887765 899999 7799999999443
No 130
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.34 E-value=0.026 Score=45.62 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=25.3
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||.|.||.||+|+- ..|..||||+++.
T Consensus 16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~ 45 (538)
T KOG0661|consen 16 RKLGDGTFGSVYLAKSKETGELVAIKKMKK 45 (538)
T ss_pred HHhcCCcceeEEEeeecCCCceeeHHHHHh
Confidence 4899999999999987 5678899999954
No 131
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=93.33 E-value=0.11 Score=43.98 Aligned_cols=45 Identities=31% Similarity=0.484 Sum_probs=33.3
Q ss_pred hhhccccccccEEEEEcC----C----CcEEEEEEeccCC-cccHHHHHHHHhh
Q 031038 122 TNILGQGAFGPVYKATMP----S----GGVAAIKVLASDS-HQGEKEFQTEVRA 166 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~----~----g~~vavk~l~~~~-~~~~~~F~~e~~~ 166 (167)
...+|+|.||.|++|.+. . ...||||.++... ..+.+.|..|+++
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~ 354 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNV 354 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHH
Confidence 348999999999999872 1 3479999997643 3345778887753
No 132
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=93.32 E-value=0.16 Score=38.62 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=25.1
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
+.||+|.||.||+|.. .+|..||+|.++.
T Consensus 13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~ 42 (309)
T cd07845 13 NRIGEGTYGIVYRARDTTSGEIVALKKVRM 42 (309)
T ss_pred eeeeecCCEEEEEEEECCCCcEEEEEEEEe
Confidence 3899999999999998 4688999999854
No 133
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=93.25 E-value=0.14 Score=38.82 Aligned_cols=43 Identities=30% Similarity=0.459 Sum_probs=30.6
Q ss_pred hhccccccccEEEEEc------CCCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM------PSGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l------~~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|+||.||++.. ..+..+|||.++... ....+.|.+|+.
T Consensus 41 ~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~ 90 (302)
T cd05055 41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELK 90 (302)
T ss_pred ceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHH
Confidence 6899999999999974 124479999986543 222356777764
No 134
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=93.24 E-value=0.15 Score=38.05 Aligned_cols=43 Identities=42% Similarity=0.651 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEcCC-Cc----EEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS-GG----VAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~----~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|+||.||+|...+ |. .+|+|.+.... .....+|..|+.
T Consensus 13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~ 61 (279)
T cd05057 13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAY 61 (279)
T ss_pred ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHH
Confidence 489999999999999742 32 58999886543 233456777764
No 135
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=93.23 E-value=0.16 Score=40.50 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=32.7
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccCCcc---cHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASDSHQ---GEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~~~~---~~~~F~~e~~ 165 (167)
..||.|.||.||+.+-.. |..+|+|.+...... ......+|+.
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~ 87 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVA 87 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHH
Confidence 589999999999999865 899999999553322 2356666664
No 136
>PHA03265 envelope glycoprotein D; Provisional
Probab=93.22 E-value=0.027 Score=43.54 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
.+++..+|+++|..++-++++-+++++|+|||
T Consensus 344 ~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~ 375 (402)
T PHA03265 344 KSNSTFVGISVGLGIAGLVLVGVILYVCLRRK 375 (402)
T ss_pred CCCCcccceEEccchhhhhhhhHHHHHHhhhh
Confidence 34555666666655544444333344444333
No 137
>PF15050 SCIMP: SCIMP protein
Probab=93.18 E-value=0.087 Score=34.43 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhheeccc
Q 031038 16 LALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 16 ~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
++++-+.+.++++|.||+..|+
T Consensus 16 II~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455566666666654433
No 138
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=93.17 E-value=0.024 Score=32.85 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=0.5
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhheecc
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
.-.++|+|+++|++++++++++++..+ |+|..
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~-rkkdE 41 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRM-RKKDE 41 (64)
T ss_dssp ----------------------------S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 346788999988888777665555544 55543
No 139
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=93.12 E-value=0.098 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=29.4
Q ss_pred hhh-hhccccccccEEEEEcCCCcEEEEEEeccCC
Q 031038 120 NFT-NILGQGAFGPVYKATMPSGGVAAIKVLASDS 153 (167)
Q Consensus 120 ~f~-~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~ 153 (167)
+|+ .-++.++.|.||+|++.+|+.||||...++-
T Consensus 127 eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi 161 (517)
T COG0661 127 EFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGI 161 (517)
T ss_pred HcCCCchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence 454 6788999999999999999999999997653
No 140
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.11 E-value=0.17 Score=38.37 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=30.1
Q ss_pred hhccccccccEEEEEcC--------CCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP--------SGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~--------~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|+||.||++... ....+|+|.++... .....+|..|++
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~ 75 (307)
T cd05098 24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEME 75 (307)
T ss_pred eeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHH
Confidence 68999999999999752 23469999997542 223355666654
No 141
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=93.09 E-value=0.085 Score=43.20 Aligned_cols=29 Identities=38% Similarity=0.685 Sum_probs=25.1
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|+||.||.+.- ..|...|+|+|+.
T Consensus 147 k~IgkGAfGeVrLarKk~Tg~iyAmK~LkK 176 (550)
T KOG0605|consen 147 KVIGKGAFGEVRLARKKDTGEIYAMKILKK 176 (550)
T ss_pred eeeccccceeEEEEEEccCCcEEeeecccH
Confidence 5899999999999987 4578899999954
No 142
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=93.07 E-value=0.13 Score=39.99 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=30.1
Q ss_pred hhccccccccEEEEEcCC--CcEEEEEEeccC---CcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS--GGVAAIKVLASD---SHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~--g~~vavk~l~~~---~~~~~~~F~~e~~ 165 (167)
..||+|+||.||+|...+ +..+|+|.+... .....+.|..|++
T Consensus 36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~ 83 (340)
T PTZ00426 36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERK 83 (340)
T ss_pred EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHH
Confidence 589999999999998743 357999998532 1222345666654
No 143
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=93.06 E-value=0.17 Score=37.56 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEcCC------CcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPS------GGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~------g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|+||.||+|...+ +..+|+|.+.... .....+|..|+.
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~ 61 (277)
T cd05032 12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEAS 61 (277)
T ss_pred eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHH
Confidence 489999999999998742 3579999986443 233456777664
No 144
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=93.05 E-value=0.15 Score=38.67 Aligned_cols=43 Identities=42% Similarity=0.710 Sum_probs=29.6
Q ss_pred hhccccccccEEEEEc-CCCc----EEEEEEeccCCc-ccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGG----VAAIKVLASDSH-QGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~----~vavk~l~~~~~-~~~~~F~~e~~ 165 (167)
..||+|+||.||+|.. .+|. .+|+|.+..... ....+|..|+.
T Consensus 13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~ 61 (303)
T cd05110 13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 61 (303)
T ss_pred cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHH
Confidence 4899999999999987 3443 478998865432 22346666654
No 145
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=92.99 E-value=0.21 Score=38.82 Aligned_cols=43 Identities=28% Similarity=0.182 Sum_probs=30.6
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- ..+..+|+|.+.... ......+.+|+.
T Consensus 23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~ 68 (355)
T cd07874 23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELV 68 (355)
T ss_pred EEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHH
Confidence 5899999999999976 357889999996432 222345555553
No 146
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=92.88 E-value=0.22 Score=37.54 Aligned_cols=29 Identities=45% Similarity=0.729 Sum_probs=25.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|.||.||++.. .++..+++|.+..
T Consensus 14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~ 43 (311)
T cd07866 14 GKLGEGTFGEVYKARQIKTGRVVALKKILM 43 (311)
T ss_pred EEeccCCCEEEEEEEECCCCcEEEEEEEEe
Confidence 5899999999999997 4678999999854
No 147
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=92.76 E-value=0.086 Score=39.46 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=36.0
Q ss_pred hhccccccccEEEEE-cCCCcEEEEEEeccCCcccHHHHHHHHhhC
Q 031038 123 NILGQGAFGPVYKAT-MPSGGVAAIKVLASDSHQGEKEFQTEVRAH 167 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~-l~~g~~vavk~l~~~~~~~~~~F~~e~~~~ 167 (167)
..+|+|+|..||.++ +.++...|+|++...+..+.+.-++|++.|
T Consensus 27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~ 72 (302)
T KOG2345|consen 27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNH 72 (302)
T ss_pred eeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHH
Confidence 589999999999887 567788999999776656667777777643
No 148
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=92.75 E-value=0.14 Score=37.73 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=26.1
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
..||+|+||.||++..+++..+|+|.+..
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~ 40 (260)
T cd05070 12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKP 40 (260)
T ss_pred heeccccCceEEEEEecCCceeEEEEecC
Confidence 38999999999999998888999999965
No 149
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=92.54 E-value=0.26 Score=37.59 Aligned_cols=43 Identities=33% Similarity=0.510 Sum_probs=30.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcc---cHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQ---GEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~---~~~~F~~e~~ 165 (167)
+.+|+|+||.||+|.. ..+..+++|.+...... ...++..|++
T Consensus 27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~ 73 (313)
T cd06633 27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVK 73 (313)
T ss_pred eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHH
Confidence 4699999999999987 46788999998643221 2245666653
No 150
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=92.50 E-value=0.15 Score=37.76 Aligned_cols=29 Identities=41% Similarity=0.533 Sum_probs=25.5
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
..||+|+||.||+|...+...||+|.++.
T Consensus 12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~ 40 (262)
T cd05071 12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKP 40 (262)
T ss_pred eecCCCCCCcEEEEEecCCceEEEEeccc
Confidence 37899999999999987767899999965
No 151
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=92.45 E-value=0.12 Score=46.41 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=25.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
.+||+|+||.|||..= -||...|||++...
T Consensus 485 ~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~ 515 (1351)
T KOG1035|consen 485 ELLGKGGFGSVVKVRNKLDGREYAIKKIPLK 515 (1351)
T ss_pred HHhcCCCCceEEEEeecccchhhhhhhccCc
Confidence 5899999999999964 28899999999654
No 152
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=92.44 E-value=0.1 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=12.4
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
+.|++++++.++++++++.+|.+|+|
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44566666655444444444333333
No 153
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=92.44 E-value=0.28 Score=37.30 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=31.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC---cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS---HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~---~~~~~~F~~e~~ 165 (167)
+.||+|.||.||+|.. .++..+++|.+.... .....+|..|++
T Consensus 21 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~ 67 (308)
T cd06634 21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVR 67 (308)
T ss_pred HheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHH
Confidence 4899999999999997 467789999985422 122345666654
No 154
>PF15069 FAM163: FAM163 family
Probab=92.43 E-value=0.17 Score=34.30 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=9.0
Q ss_pred hHHHHHHHHHH-HHHHHhhhh
Q 031038 13 CVGLALGILIA-TLVFFGLRW 32 (167)
Q Consensus 13 i~g~~~~v~~i-~~~~~~~~~ 32 (167)
..|++++|+++ +++++|+||
T Consensus 9 tGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 9 TGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred echHHHHHHHHHHHHHHHHHh
Confidence 34455444444 334444444
No 155
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=92.41 E-value=0.3 Score=36.77 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=25.1
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~ 151 (167)
..||+|.||.||++... ++..+|+|.+..
T Consensus 18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~ 47 (310)
T cd07865 18 AKIGQGTFGEVFKARHKKTKQIVALKKVLM 47 (310)
T ss_pred EEeecCCCEEEEEEEECCCCcEEEEEEEec
Confidence 58999999999999874 688999999854
No 156
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=92.34 E-value=0.28 Score=37.77 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=29.9
Q ss_pred hccccccccEEEEEcC-CCcEEEEEEeccC--CcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMP-SGGVAAIKVLASD--SHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~~vavk~l~~~--~~~~~~~F~~e~~ 165 (167)
.||+|.||.||+|... ++..+++|++... .......+..|+.
T Consensus 14 ~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~ 58 (337)
T cd07852 14 KLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIM 58 (337)
T ss_pred hhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHH
Confidence 8999999999999974 5788999998432 1222344555553
No 157
>PF15102 TMEM154: TMEM154 protein family
Probab=92.20 E-value=0.096 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.384 Sum_probs=7.1
Q ss_pred eehhhHHHHHHHHHHH
Q 031038 9 IIGICVGLALGILIAT 24 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~ 24 (167)
++.|+++.++++++++
T Consensus 58 iLmIlIP~VLLvlLLl 73 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLL 73 (146)
T ss_pred EEEEeHHHHHHHHHHH
Confidence 4445555444433333
No 158
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=92.19 E-value=0.24 Score=37.53 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=30.0
Q ss_pred hhccccccccEEEEEc--------CCCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM--------PSGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l--------~~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.. .++..+++|.++... .....++..|+.
T Consensus 21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~ 72 (304)
T cd05101 21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEME 72 (304)
T ss_pred ceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHH
Confidence 5899999999999974 123479999986432 233456666654
No 159
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=92.18 E-value=0.3 Score=37.93 Aligned_cols=43 Identities=30% Similarity=0.264 Sum_probs=31.2
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC--CcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD--SHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~--~~~~~~~F~~e~~ 165 (167)
..||+|+||.||++.- .+|..+|+|.+... ......++..|+.
T Consensus 22 ~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~ 67 (353)
T cd07850 22 KPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELV 67 (353)
T ss_pred EEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHH
Confidence 5899999999999986 46889999998542 1222345656653
No 160
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=91.84 E-value=0.071 Score=41.09 Aligned_cols=40 Identities=40% Similarity=0.569 Sum_probs=30.2
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
..||+|+||.|||+.- +.|+.+|+|.+.-.+. ..+...|+
T Consensus 39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sD--LQEIIKEI 79 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTD--LQEIIKEI 79 (502)
T ss_pred HHhcCCcchHHHHHHHhccCcEEEEEecCccch--HHHHHHHH
Confidence 4899999999999987 5789999999855432 33444444
No 161
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=91.83 E-value=0.17 Score=37.27 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=26.8
Q ss_pred hhhccccccccEEEEEcCCCcEEEEEEeccCC
Q 031038 122 TNILGQGAFGPVYKATMPSGGVAAIKVLASDS 153 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~ 153 (167)
.+.||+|+||.||++...++..+++|.+....
T Consensus 11 ~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~ 42 (260)
T cd05073 11 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS 42 (260)
T ss_pred EeEecCccceEEEEEEecCCccEEEEecCCCh
Confidence 34899999999999998777889999886533
No 162
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=91.63 E-value=0.081 Score=33.00 Aligned_cols=11 Identities=9% Similarity=-0.018 Sum_probs=4.4
Q ss_pred HHHHhhhheec
Q 031038 25 LVFFGLRWYKK 35 (167)
Q Consensus 25 ~~~~~~~~~r~ 35 (167)
+.++|+||.|+
T Consensus 58 i~Lv~CC~~K~ 68 (98)
T PF07204_consen 58 IALVCCCRAKH 68 (98)
T ss_pred HHHHHHhhhhh
Confidence 33444444333
No 163
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=91.56 E-value=0.34 Score=36.36 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=26.5
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~ 153 (167)
..||.|+||.+|.|.- .+|..||+|.-+...
T Consensus 21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a 52 (341)
T KOG1163|consen 21 RKIGSGSFGDIYLGISITSGEEVAIKLESSKA 52 (341)
T ss_pred EeecCCchhheeeeeeccCCceEEEEeecccC
Confidence 6899999999999976 789999999875543
No 164
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=91.56 E-value=0.24 Score=36.48 Aligned_cols=29 Identities=41% Similarity=0.536 Sum_probs=25.4
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
..||+|++|.||++...++..+++|.+..
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~ 40 (260)
T cd05069 12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKP 40 (260)
T ss_pred eeecCcCCCeEEEEEEcCCceEEEEEccc
Confidence 37999999999999997777899998864
No 165
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.47 E-value=0.37 Score=36.73 Aligned_cols=43 Identities=26% Similarity=0.460 Sum_probs=30.1
Q ss_pred hhccccccccEEEEEc--------CCCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM--------PSGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l--------~~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
+.||+|.||.||++.. .....+|+|.++... .....+|..|++
T Consensus 18 ~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~ 69 (314)
T cd05099 18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEME 69 (314)
T ss_pred eeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHH
Confidence 5899999999999964 124568999986532 233456767764
No 166
>PHA02882 putative serine/threonine kinase; Provisional
Probab=91.31 E-value=0.19 Score=38.00 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=20.5
Q ss_pred hhccccccccEEEEEcCCC----cEEEEEEe
Q 031038 123 NILGQGAFGPVYKATMPSG----GVAAIKVL 149 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g----~~vavk~l 149 (167)
+.||+|+||.||+|...+. ..+++|..
T Consensus 18 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~ 48 (294)
T PHA02882 18 KLIGCGGFGCVYETQCASDHCINNQAVAKIE 48 (294)
T ss_pred eEEecCCCceEEEEEEcCCcccccceEEEec
Confidence 5899999999999998543 34566653
No 167
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=91.18 E-value=0.3 Score=40.80 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=26.6
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~ 153 (167)
++||+|.||.|.++.= ..++.||||.+++..
T Consensus 192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k 223 (586)
T KOG0667|consen 192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK 223 (586)
T ss_pred EEecccccceeEEEEecCCCcEEEEEeeccCh
Confidence 6899999999999975 457899999997754
No 168
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=91.13 E-value=0.3 Score=32.74 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhheecccCcc
Q 031038 20 ILIATLVFFGLRWYKKHDHFR 40 (167)
Q Consensus 20 v~~i~~~~~~~~~~r~~~~~~ 40 (167)
|+++++++|+++|+++||+++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334444555566677777764
No 169
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=91.12 E-value=0.54 Score=34.56 Aligned_cols=41 Identities=34% Similarity=0.644 Sum_probs=31.2
Q ss_pred hccccccccEEEEEcC-CCcEEEEEEeccCCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATMP-SGGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
.||+|.+|.||+|... ++..+++|.+..... ..++|..|+.
T Consensus 13 ~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~ 54 (275)
T cd06608 13 VIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYN 54 (275)
T ss_pred eecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHH
Confidence 8999999999999984 567899999865432 3356766664
No 170
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=91.06 E-value=0.41 Score=37.05 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|.||.||+|... ++..+|+|.+.... ......+..|+.
T Consensus 21 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~ 66 (343)
T cd07851 21 SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELR 66 (343)
T ss_pred EEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHH
Confidence 58999999999999984 57889999985421 222344555553
No 171
>PF14851 FAM176: FAM176 family
Probab=90.82 E-value=3.4 Score=28.59 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=10.8
Q ss_pred ehhhHHHHHHHHHHHHHHHh
Q 031038 10 IGICVGLALGILIATLVFFG 29 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~ 29 (167)
+..++|+++++++.+++++.
T Consensus 24 LYFv~gVC~GLlLtLcllV~ 43 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLLVI 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666665555444443
No 172
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=90.67 E-value=0.46 Score=36.56 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=29.7
Q ss_pred hhccccccccEEEEEcC--------CCcEEEEEEeccCC-cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP--------SGGVAAIKVLASDS-HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~--------~g~~vavk~l~~~~-~~~~~~F~~e~~ 165 (167)
..||+|+||.||++... .+..+|+|.++... .....+|..|+.
T Consensus 18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~ 69 (334)
T cd05100 18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEME 69 (334)
T ss_pred ceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHH
Confidence 58999999999999741 12368999886532 223456777664
No 173
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=90.67 E-value=0.9 Score=34.81 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=29.2
Q ss_pred CHHHHHHHhhhhhhhccccccccEEEEEcC-CCcEEEEEEeccC
Q 031038 110 AYKDIQKATQNFTNILGQGAFGPVYKATMP-SGGVAAIKVLASD 152 (167)
Q Consensus 110 ~~~~l~~~~~~f~~~lg~g~~g~vy~g~l~-~g~~vavk~l~~~ 152 (167)
...||+... .+|.|..|.|++.++. .|..+|||.+...
T Consensus 90 dindl~~l~-----dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt 128 (391)
T KOG0983|consen 90 DINDLENLG-----DLGSGTCGQVWKMRFRSTGHIIAVKQMRRT 128 (391)
T ss_pred ChHHhhhHH-----hhcCCCccceEEEEEcccceEEEEEeeccc
Confidence 445554333 7899999999999995 4788999999553
No 174
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=90.25 E-value=0.1 Score=34.43 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHhhhheecccC
Q 031038 26 VFFGLRWYKKHDH 38 (167)
Q Consensus 26 ~~~~~~~~r~~~~ 38 (167)
.+++|+|+|||++
T Consensus 97 g~lv~rrcrrr~~ 109 (129)
T PF12191_consen 97 GFLVWRRCRRREK 109 (129)
T ss_dssp -------------
T ss_pred HHHHHhhhhcccc
Confidence 4444444444333
No 175
>PF15069 FAM163: FAM163 family
Probab=90.01 E-value=3.2 Score=28.21 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=12.8
Q ss_pred ceeehhhHH-HHHHHHHHHHHHHh
Q 031038 7 LVIIGICVG-LALGILIATLVFFG 29 (167)
Q Consensus 7 ~~ii~ii~g-~~~~v~~i~~~~~~ 29 (167)
.+|.|.|++ ++++.+++++..+.
T Consensus 6 vVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHh
Confidence 345554444 44556666666554
No 176
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.58 E-value=0.067 Score=45.22 Aligned_cols=44 Identities=36% Similarity=0.542 Sum_probs=33.1
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
..||.|+||.|||++-.+ +...|-|.+...+....++|+-||++
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeI 82 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEI 82 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhh
Confidence 378999999999998854 34457788866655566788888764
No 177
>PHA03209 serine/threonine kinase US3; Provisional
Probab=89.44 E-value=0.54 Score=36.69 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.1
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~ 151 (167)
..||+|.||.||+|... .+..||+|....
T Consensus 72 ~~lg~G~~g~Vy~~~~~~~~~~valK~~~~ 101 (357)
T PHA03209 72 KTLTPGSEGRVFVATKPGQPDPVVLKIGQK 101 (357)
T ss_pred EEecCCCCeEEEEEEECCCCceEEEEeCCc
Confidence 78999999999999984 456899997543
No 178
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.39 E-value=0.57 Score=37.16 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=24.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|.||.||.|.- ..|..||+|.++.
T Consensus 23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred eeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 5899999999999966 5679999997654
No 179
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=89.07 E-value=0.7 Score=41.36 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=32.1
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHhh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVRA 166 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~~ 166 (167)
..||+|.||.||++.. ..+..+|+|.+.... ......|..|+.+
T Consensus 19 ~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~I 65 (1021)
T PTZ00266 19 KKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNV 65 (1021)
T ss_pred EEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHH
Confidence 5899999999999987 456788999885432 2234567777643
No 180
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=88.90 E-value=0.36 Score=28.38 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=16.2
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
.|..||++.|++++++-. +.-+++.+++
T Consensus 32 qW~aIGvi~gi~~~~lt~-ltN~YFK~k~ 59 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTY-LTNLYFKIKE 59 (68)
T ss_pred cchhHHHHHHHHHHHHHH-HhHhhhhhhH
Confidence 577888887776655443 3334444333
No 181
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.89 E-value=0.63 Score=37.70 Aligned_cols=42 Identities=31% Similarity=0.504 Sum_probs=32.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCccc-HHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQG-EKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~-~~~F~~e~ 164 (167)
.+||.|.-+.||+|.. +-+..||||+++.+.... .++...|+
T Consensus 32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~ 75 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEV 75 (516)
T ss_pred EEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHH
Confidence 4899999999999977 667899999997654333 35555555
No 182
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=88.53 E-value=0.74 Score=37.61 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=30.1
Q ss_pred hhccccccccEEEEEcC-C-CcEEEEEEeccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMP-S-GGVAAIKVLASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~-g~~vavk~l~~~~~~~~~~F~~e~~ 165 (167)
+.+|+|+||.||++.-. + +..|++|.+..........+..|++
T Consensus 73 ~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~ 117 (478)
T PTZ00267 73 TLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELH 117 (478)
T ss_pred EEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHH
Confidence 58999999999999753 3 5678888775443333445666664
No 183
>PHA03212 serine/threonine kinase US3; Provisional
Probab=88.46 E-value=0.52 Score=37.48 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=24.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEec
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLA 150 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~ 150 (167)
..||+|+||.||++.- ..+..||+|...
T Consensus 98 ~~lg~G~~g~V~~~~d~~~~~~vaiK~~~ 126 (391)
T PHA03212 98 ETFTPGAEGFAFACIDNKTCEHVVIKAGQ 126 (391)
T ss_pred EEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence 6899999999999986 467899999764
No 184
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=88.37 E-value=0.46 Score=42.15 Aligned_cols=29 Identities=38% Similarity=0.688 Sum_probs=26.1
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
..+|+|+||.||+|.-.+|..||+|.=+.
T Consensus 704 ~e~G~g~y~~vy~a~~~~~~~~alK~e~P 732 (974)
T KOG1166|consen 704 KEIGEGSYGSVYVATHSNGKLVALKVEKP 732 (974)
T ss_pred eeeccccceEEEEeecCCCcEEEEEeecC
Confidence 68999999999999998899999997644
No 185
>PHA03211 serine/threonine kinase US3; Provisional
Probab=87.94 E-value=0.65 Score=37.96 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.2
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEe
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVL 149 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l 149 (167)
..||+|+||.||++... .+..||||..
T Consensus 175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 175 RALTPGSEGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred EEEccCCCeEEEEEEECCCCCEEEEecc
Confidence 67899999999999985 4678999964
No 186
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=87.86 E-value=0.57 Score=36.67 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=24.4
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEec
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLA 150 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~ 150 (167)
.||+|.||.|..+.- .+|..||+|++.
T Consensus 29 ~iG~GAyGvVcsA~~~~t~~~VAIKKi~ 56 (359)
T KOG0660|consen 29 PIGRGAYGVVCSAKDKRTGEKVAIKKIL 56 (359)
T ss_pred cccCcceeeEEEEEEcCCCCEeehhhhh
Confidence 799999999999987 578999999995
No 187
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=87.86 E-value=1 Score=33.17 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=30.4
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEecc-CCcccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLAS-DSHQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~-~~~~~~~~F~~e~~ 165 (167)
.||+|++|.|-+-+. ++|...|||++.. .+.+..+..+.|+.
T Consensus 53 elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dld 96 (282)
T KOG0984|consen 53 ELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLD 96 (282)
T ss_pred hhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhh
Confidence 789999999877766 6899999999965 22333445555543
No 188
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.42 E-value=0.48 Score=31.42 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=6.0
Q ss_pred ehhhHHHHHHHHHH
Q 031038 10 IGICVGLALGILIA 23 (167)
Q Consensus 10 i~ii~g~~~~v~~i 23 (167)
.+.++++++++++.
T Consensus 63 ~~~i~~Ii~gv~aG 76 (122)
T PF01102_consen 63 EPAIIGIIFGVMAG 76 (122)
T ss_dssp -TCHHHHHHHHHHH
T ss_pred ccceeehhHHHHHH
Confidence 34445555544433
No 189
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=87.23 E-value=1 Score=37.44 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=18.9
Q ss_pred hhccccccccEEEEEcCCCcEEEEE
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIK 147 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk 147 (167)
+.||+|.||.||+|.+.+.. +++|
T Consensus 339 ~~iG~G~~g~Vy~~~~~~~~-~v~k 362 (535)
T PRK09605 339 HLIGKGAEADIKKGEYLGRD-AVIK 362 (535)
T ss_pred ceeccCCcEEEEEEeecCcc-ceeE
Confidence 58999999999999996544 4444
No 190
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=86.89 E-value=0.37 Score=40.42 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=25.6
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~ 153 (167)
.-||.|+-|.||.|.|.+ ..||||+++...
T Consensus 130 eWlGSGaQGAVF~Grl~n-etVAVKKV~elk 159 (904)
T KOG4721|consen 130 EWLGSGAQGAVFLGRLHN-ETVAVKKVRELK 159 (904)
T ss_pred hhhccCcccceeeeeccC-ceehhHHHhhhh
Confidence 378999999999999955 799999986553
No 191
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=86.80 E-value=1.3 Score=36.86 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=37.5
Q ss_pred CCCCccCHHHHHHHh------------hhhh-hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 104 SGIPRYAYKDIQKAT------------QNFT-NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 104 ~~~~~~~~~~l~~~~------------~~f~-~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
+..+.++++|+.... ..|. .-|+.-++|.||++++.+|..||||.-.+.
T Consensus 135 D~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 135 DQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHPG 196 (538)
T ss_pred ccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCcC
Confidence 345677777776553 2243 678889999999999999999999997554
No 192
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=86.77 E-value=0.96 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=4.5
Q ss_pred eehhhHHHHHHHH
Q 031038 9 IIGICVGLALGIL 21 (167)
Q Consensus 9 ii~ii~g~~~~v~ 21 (167)
++++++.++++++
T Consensus 6 i~~iialiv~~ii 18 (81)
T PF00558_consen 6 ILAIIALIVALII 18 (81)
T ss_dssp --HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 193
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=86.59 E-value=0.73 Score=35.43 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=17.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
.++.|++.++++++.++++.+||||.+|..
T Consensus 199 ~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~ 228 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAGYCWYRLQREI 228 (341)
T ss_pred eeehhHHHHHHHHHHHHHhhheEEEecccc
Confidence 444555555556666666677777654433
No 194
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.50 E-value=1.4 Score=33.60 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=10.4
Q ss_pred cCCcceeehhhHHHHHHH
Q 031038 3 HKSDLVIIGICVGLALGI 20 (167)
Q Consensus 3 ~~s~~~ii~ii~g~~~~v 20 (167)
+++.+.+++|-+++.+++
T Consensus 223 ~l~~G~VVlIslAiALG~ 240 (281)
T PF12768_consen 223 KLSRGFVVLISLAIALGT 240 (281)
T ss_pred cccceEEEEEehHHHHHH
Confidence 456666666666655433
No 195
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.34 E-value=0.76 Score=39.67 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=31.6
Q ss_pred hccccccccEEEEEcCCC-cEEEEEEeccCCcccHHHHHHHHhhC
Q 031038 124 ILGQGAFGPVYKATMPSG-GVAAIKVLASDSHQGEKEFQTEVRAH 167 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l~~g-~~vavk~l~~~~~~~~~~F~~e~~~~ 167 (167)
++|+|.||+||-|.=.+. ..+|||-+............+||..|
T Consensus 582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH 626 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALH 626 (1226)
T ss_pred EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHH
Confidence 689999999999986443 46899999654444445566666543
No 196
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=85.73 E-value=0.48 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=14.2
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhh
Q 031038 8 VIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
.++++++|.++++.+.++..+.+.
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LL 107 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALL 107 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Confidence 566777777766655555444443
No 197
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=85.68 E-value=1.4 Score=34.78 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecccCccc
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKHDHFRR 41 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~ 41 (167)
.+++|.+.++..++++-+++|+|-.|.|.+|.+.+
T Consensus 15 ivlwgsLaav~~f~lis~LifLCsSC~reKK~~~~ 49 (428)
T PF15347_consen 15 IVLWGSLAAVTTFLLISFLIFLCSSCDREKKPKQQ 49 (428)
T ss_pred EEeehHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 45667666666666666666777666665555433
No 198
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=85.59 E-value=1.4 Score=26.65 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=7.4
Q ss_pred ehhhHHHHHHHHHHHHHH
Q 031038 10 IGICVGLALGILIATLVF 27 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~ 27 (167)
+++++|++++++++++++
T Consensus 4 ~~~~~g~~~ll~~v~~~~ 21 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVI 21 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHhheeEE
Confidence 344444444333333333
No 199
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.55 E-value=1.4 Score=35.46 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.3
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|+||.|-+|.= ..|+.||||.++.
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~k 207 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINK 207 (475)
T ss_pred eeecCCceeEEEEEEEcccCcEEEeeeeeh
Confidence 7899999999998866 5789999999954
No 200
>PHA03207 serine/threonine kinase US3; Provisional
Probab=85.48 E-value=1.3 Score=35.00 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.0
Q ss_pred hhccccccccEEEEEcC---CCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMP---SGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~---~g~~vavk~l~~~ 152 (167)
..||+|.||.||++... .+..|++|.+...
T Consensus 98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~ 130 (392)
T PHA03207 98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG 130 (392)
T ss_pred EeecCCCCeEEEEEEEcCCccceeEEEEecccc
Confidence 68999999999999763 3467999988543
No 201
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=85.07 E-value=1.9 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=24.5
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
+++|.|+||.||...- ++..+++|.+.+.
T Consensus 37 ~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~ 65 (232)
T PRK10359 37 KVFRNIDDTKVSLIDT-DYGKYILKVFAPK 65 (232)
T ss_pred EEecCCCceEEEEEec-CCCcEEEEEechh
Confidence 7899999999998666 5668999999653
No 202
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=84.99 E-value=0.62 Score=35.32 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=16.7
Q ss_pred cce-eehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 6 DLV-IIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 6 ~~~-ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
.|. ++++++|+++++++.++++++.+.+|++|
T Consensus 212 ~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k 244 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKK 244 (278)
T ss_pred eEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 344 55567777765555544444444444333
No 203
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=84.65 E-value=3.4 Score=30.58 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.6
Q ss_pred ccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 125 LGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 125 lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
+|+|.||.||++.- .++..+++|.+..
T Consensus 24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 24 LIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred ecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 49999999999987 4677889998854
No 204
>PLN03150 hypothetical protein; Provisional
Probab=84.63 E-value=0.8 Score=38.91 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=15.4
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhh
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
++.+.++++++|++++++++++++++++
T Consensus 541 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 568 (623)
T PLN03150 541 LSVGAKIGIAFGVSVAFLFLVICAMCWW 568 (623)
T ss_pred CCCceEEEEEhHHHHHHHHHHHHHhhhe
Confidence 3456677777777765444444333333
No 205
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=84.59 E-value=0.51 Score=36.96 Aligned_cols=29 Identities=34% Similarity=0.763 Sum_probs=24.4
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
++||+|+||.||...- +.++..|+|.|+.
T Consensus 31 kviGkG~fGkV~~Vrk~dt~kiYAmKvl~K 60 (357)
T KOG0598|consen 31 KVIGKGSFGKVFQVRKKDTGKIYAMKVLKK 60 (357)
T ss_pred eeeeccCCceEEEEEEcccCceeehhhhhh
Confidence 5999999999998876 4567889999954
No 206
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=84.49 E-value=1.8 Score=22.66 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=4.5
Q ss_pred CcCCcceeeh
Q 031038 2 VHKSDLVIIG 11 (167)
Q Consensus 2 ~~~s~~~ii~ 11 (167)
+.++.+.|+.
T Consensus 4 s~lp~GVIlV 13 (43)
T PF08114_consen 4 STLPGGVILV 13 (43)
T ss_pred ccCCCCeeee
Confidence 3445554433
No 207
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=84.24 E-value=0.92 Score=36.24 Aligned_cols=31 Identities=39% Similarity=0.541 Sum_probs=25.8
Q ss_pred hhccccccccEEEEEcC----CCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATMP----SGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~----~g~~vavk~l~~~~ 153 (167)
+.||+|.|+.||++++. ....||+|.+...+
T Consensus 42 ~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts 76 (418)
T KOG1167|consen 42 NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS 76 (418)
T ss_pred ccccccchhhhhhhhHhhhccccceEeeeeccccc
Confidence 79999999999999983 35689999996543
No 208
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=84.15 E-value=1.3 Score=38.57 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=20.4
Q ss_pred HHHHHHHhh-hhhhhccccccccEEEEEcCC
Q 031038 111 YKDIQKATQ-NFTNILGQGAFGPVYKATMPS 140 (167)
Q Consensus 111 ~~~l~~~~~-~f~~~lg~g~~g~vy~g~l~~ 140 (167)
.+|.+.... -..+.+|+|+||+||.|.-++
T Consensus 987 ~deWe~~r~it~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 987 PDEWEVSREITLGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred hhHHHHHHHHhhhhhhccCccceEEEecCCc
Confidence 344444432 112689999999999998754
No 209
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=84.12 E-value=0.85 Score=36.80 Aligned_cols=43 Identities=33% Similarity=0.513 Sum_probs=31.5
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHH---HHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKE---FQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~---F~~e~~ 165 (167)
..||+|.||.|-++.= ..|..||||.++...-.+..+ ..+||+
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIe 105 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIE 105 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHH
Confidence 4899999999998876 578999999996654443333 344554
No 210
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=83.57 E-value=2.3 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=16.3
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 10 IGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+.+.+++.+++.++++.+|+|.-|+
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556666666666677777776544
No 211
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=83.21 E-value=0.93 Score=24.96 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.2
Q ss_pred hhhHHHHH
Q 031038 11 GICVGLAL 18 (167)
Q Consensus 11 ~ii~g~~~ 18 (167)
|+++++++
T Consensus 18 GLi~A~vl 25 (50)
T PF02038_consen 18 GLIFAGVL 25 (50)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 34444333
No 212
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=82.61 E-value=1.6 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=17.3
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
.++|++++++++-++|++++=|-.||+-...
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~k~~~S 49 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWYKYLAS 49 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3566666666655666655555555554433
No 213
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=82.55 E-value=1.6 Score=28.29 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=7.0
Q ss_pred HHHHHHHhhhheecccC
Q 031038 22 IATLVFFGLRWYKKHDH 38 (167)
Q Consensus 22 ~i~~~~~~~~~~r~~~~ 38 (167)
++++-++.|+..+++++
T Consensus 14 ~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 14 SLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 33444444444443333
No 214
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=81.97 E-value=2.1 Score=33.07 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=22.5
Q ss_pred hhccccccccEEEEEcCCC--cEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSG--GVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g--~~vavk~l~~ 151 (167)
..||+|+||.||.+.-.+. ..+|+|....
T Consensus 24 ~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~ 54 (322)
T KOG1164|consen 24 KKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK 54 (322)
T ss_pred eeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence 4899999999999986443 3678877644
No 215
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.65 E-value=0.68 Score=35.40 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=30.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC--CcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD--SHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~--~~~~~~~F~~e~~ 165 (167)
+-||-|.||.||..+- ++|..||.|++.+- +....+.|.+|++
T Consensus 59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~k 104 (449)
T KOG0664|consen 59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIK 104 (449)
T ss_pred CcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHH
Confidence 4899999999998877 47899999998542 1222355655554
No 216
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=81.39 E-value=2.5 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=16.7
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 9 IIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
++.+.+++.+++.++++++|+|.-|+
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666666667777777776544
No 217
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=81.31 E-value=0.55 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=19.6
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
.+.++||.+++++ ++++++.+||++++|..=
T Consensus 52 IGvVVGVGg~ill-~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 52 IGVVVGVGGPILL-GILALVFIFCIRRKKTDF 82 (154)
T ss_pred EEEEecccHHHHH-HHHHhheeEEEecccCcc
Confidence 4567776665554 555566777777776533
No 218
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=81.09 E-value=0.76 Score=38.09 Aligned_cols=30 Identities=40% Similarity=0.553 Sum_probs=25.4
Q ss_pred hhhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 122 TNILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..+||+|.|.+||+++= ..+...|||.|+.
T Consensus 78 g~~lGeGSYStV~~A~~~~t~keYAiKVl~K 108 (604)
T KOG0592|consen 78 GKILGEGSYSTVVLAREKATGKEYAIKVLDK 108 (604)
T ss_pred hheeccccceeEEEeeecCCCceeeHhhhhH
Confidence 47999999999999976 4678899999843
No 219
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.94 E-value=0.79 Score=37.07 Aligned_cols=33 Identities=42% Similarity=0.644 Sum_probs=25.1
Q ss_pred hhhhhccccccccEEEEEcCCC-cEEEEEEeccC
Q 031038 120 NFTNILGQGAFGPVYKATMPSG-GVAAIKVLASD 152 (167)
Q Consensus 120 ~f~~~lg~g~~g~vy~g~l~~g-~~vavk~l~~~ 152 (167)
+|.-+||+|+||.|..+.-... ...|||.|+..
T Consensus 352 nFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKD 385 (683)
T KOG0696|consen 352 NFLMVLGKGSFGKVLLAERKGTDELYAIKILKKD 385 (683)
T ss_pred ceEEEeccCccceeeeecccCcchhhhhhhhccc
Confidence 4457999999999999887432 35799988543
No 220
>PHA03210 serine/threonine kinase US3; Provisional
Probab=80.84 E-value=2 Score=35.42 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=14.6
Q ss_pred hhccccccccEEEEEc
Q 031038 123 NILGQGAFGPVYKATM 138 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l 138 (167)
..||+|+||.||++.+
T Consensus 154 ~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 154 DDLPAGAFGKIFICAL 169 (501)
T ss_pred eEecCCCCcceEEEEE
Confidence 7899999999999876
No 221
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=80.54 E-value=5 Score=30.86 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=30.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
..+|+|.||.+..++- +..+.+++|-+... -....+|.+|.
T Consensus 30 k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEf 71 (378)
T KOG1345|consen 30 KQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREF 71 (378)
T ss_pred HHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHh
Confidence 5899999999999988 45677888887432 12356777764
No 222
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=80.42 E-value=4.1 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.2
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~ 152 (167)
..||.|..|.||.+.+.+ +...|+|.++..
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~ 113 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKE 113 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecHH
Confidence 389999999999999954 367899999653
No 223
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=80.03 E-value=0.55 Score=35.90 Aligned_cols=31 Identities=16% Similarity=-0.052 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
.|.++++.++++++.+++++++.++|+.+..
T Consensus 149 ~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 149 FIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 3466777777778888888888888886655
No 224
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=79.40 E-value=2.8 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhheecccCcccCCCC
Q 031038 17 ALGILIATLVFFGLRWYKKHDHFRRCSNE 45 (167)
Q Consensus 17 ~~~v~~i~~~~~~~~~~r~~~~~~~~~~~ 45 (167)
++++++++++++-+...+.++++.+....
T Consensus 6 il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 34455666666666777777776555444
No 225
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=78.71 E-value=1.6 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=13.8
Q ss_pred eehhhHHHHHHHHHHHH-HHHhhhheec
Q 031038 9 IIGICVGLALGILIATL-VFFGLRWYKK 35 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~-~~~~~~~~r~ 35 (167)
-+++.+|+.++++++++ +-+.|+|+++
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeecc
Confidence 45666666665544433 3344444443
No 226
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=78.34 E-value=4.1 Score=34.24 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=31.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
..||+|.|+.|..+.- ..|..||+|.++... ......+.+|++
T Consensus 62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~ 107 (596)
T KOG0586|consen 62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVD 107 (596)
T ss_pred eeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHH
Confidence 5899999999999987 357899999995532 223345777764
No 227
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=77.87 E-value=1.8 Score=26.44 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=6.7
Q ss_pred eehhhHHHHHHHHHHHH
Q 031038 9 IIGICVGLALGILIATL 25 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~ 25 (167)
++++++.+++.+++-.+
T Consensus 9 iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 9 IIALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433443333
No 228
>PHA03049 IMV membrane protein; Provisional
Probab=77.72 E-value=6.4 Score=22.98 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHhhhheec
Q 031038 22 IATLVFFGLRWYKK 35 (167)
Q Consensus 22 ~i~~~~~~~~~~r~ 35 (167)
++++++..++.|++
T Consensus 14 Ii~lIvYgiYnkk~ 27 (68)
T PHA03049 14 IIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHhccc
Confidence 33334444444433
No 229
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=77.32 E-value=3.2 Score=29.19 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.8
Q ss_pred cceeehhhHH
Q 031038 6 DLVIIGICVG 15 (167)
Q Consensus 6 ~~~ii~ii~g 15 (167)
.++|.+|+.+
T Consensus 114 ~g~IaGIvsa 123 (169)
T PF12301_consen 114 AGTIAGIVSA 123 (169)
T ss_pred cchhhhHHHH
Confidence 3455555433
No 230
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.26 E-value=4.6 Score=33.60 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=30.8
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~~~~~~F~~e~ 164 (167)
..+|+|+-|.||.+.= ..+..||||+++...-...+-..+|+
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi 321 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEI 321 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHH
Confidence 5789999999998854 57789999999765433333445554
No 231
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=77.10 E-value=2.1 Score=33.14 Aligned_cols=39 Identities=36% Similarity=0.586 Sum_probs=30.1
Q ss_pred cCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 109 YAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 109 ~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
+.+++.+.. ..||.|.||.|...+. .+|...|.|.|+..
T Consensus 41 ~~l~dfe~~-----~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~ 80 (355)
T KOG0616|consen 41 YSLQDFERL-----KTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ 80 (355)
T ss_pred cchhhhhhe-----eeeccCccceEEEEEEccCCceeehhhcCHH
Confidence 566665433 3899999999999888 46788899999653
No 232
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=76.99 E-value=0.82 Score=37.32 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=23.5
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEec
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLA 150 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~ 150 (167)
++||+|+|..|||+.- .....||||.-.
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHq 497 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQ 497 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeeeh
Confidence 7899999999999964 566789999863
No 233
>PHA03286 envelope glycoprotein E; Provisional
Probab=76.45 E-value=3 Score=33.80 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhe
Q 031038 11 GICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
.+.+|+++++++..+++.+.+||
T Consensus 395 s~~~~~~~~~~~~~~~~~~~~~r 417 (492)
T PHA03286 395 SMAAGAILVVLLFALCIAGLYRR 417 (492)
T ss_pred HHHHHHHHHHHHHHHHhHhHhhh
Confidence 33444444444444444444433
No 234
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=76.09 E-value=1.3 Score=40.01 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=24.6
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~ 151 (167)
.+||+|+||.|......+ +...|.|+|+.
T Consensus 81 KvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 81 KVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHhcccccceeEEEEeeccccchhHHHhhH
Confidence 699999999999999844 55679999965
No 235
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.47 E-value=5.5 Score=30.47 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=21.7
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 5 SDLVIIGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
-..+-+++.+|++++++++.+++.+++|||.
T Consensus 229 VVlIslAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 229 VVLISLAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred EEEEehHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456788888988877777776666665543
No 236
>PHA03283 envelope glycoprotein E; Provisional
Probab=74.99 E-value=14 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=11.7
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhh
Q 031038 7 LVIIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
++.+..++++++++++++++++++
T Consensus 399 ~l~~~~~~~~~~~~~~~~l~vw~c 422 (542)
T PHA03283 399 YLAFLLAIICTCAALLVALVVWGC 422 (542)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhe
Confidence 344444555555555444444444
No 237
>PF15179 Myc_target_1: Myc target protein 1
Probab=74.61 E-value=4.2 Score=28.84 Aligned_cols=23 Identities=35% Similarity=0.836 Sum_probs=12.8
Q ss_pred eeehhhHHHHHHHHHHHHHHHhh
Q 031038 8 VIIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
+|++..+.+++++++.+++.+++
T Consensus 21 lIlaF~vSm~iGLviG~li~~Ll 43 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALL 43 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555444433
No 238
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=74.59 E-value=5.1 Score=24.81 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=23.3
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhheecccCcccCC
Q 031038 9 IIGICVGLALGILIATLVFFGLRWYKKHDHFRRCS 43 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~~ 43 (167)
-+++++|+.+ +++++-+.+|..|+|-|+...+.-
T Consensus 36 ~~lvI~~iFi-l~VilwfvCC~kRkrsRrPIYrPv 69 (94)
T PF05393_consen 36 WFLVICGIFI-LLVILWFVCCKKRKRSRRPIYRPV 69 (94)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHhhhccCCccccc
Confidence 3566666655 566677778888888777766654
No 239
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=74.54 E-value=4.1 Score=28.32 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhheecccC
Q 031038 14 VGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
+|.+++.+.++.++++|.||+.++.
T Consensus 154 IG~~VlA~~VA~L~~~F~RR~~rrs 178 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTWFFLRRTGRRS 178 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4555545555555555555544433
No 240
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=74.46 E-value=5.1 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhheecc
Q 031038 12 ICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
+++.+++++++++.+.++.+.+.++
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555544444444444444333
No 241
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=73.56 E-value=9.1 Score=27.55 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=24.2
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~~~ 153 (167)
..|++|.++.||.|.+.+ ..+|+|.=..++
T Consensus 28 ~~L~KG~~s~Vyl~~~~~-~~~a~Kvrr~ds 57 (201)
T COG2112 28 KELAKGTTSVVYLGEWRG-GEVALKVRRRDS 57 (201)
T ss_pred hhhhcccccEEEEeeccC-ceEEEEEecCCc
Confidence 389999999999999955 588888765443
No 242
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=73.20 E-value=1.4 Score=35.01 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=12.8
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
..+|+++++.+++++ ++..++|++.+||
T Consensus 386 ~~i~~avl~p~~il~-~~~~~~~~~v~rr 413 (436)
T PTZ00208 386 AMIILAVLVPAIILA-IIAVAFFIMVKRR 413 (436)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhheeeeec
Confidence 345555555555444 3333344444333
No 243
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.11 E-value=3.2 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=26.4
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~ 153 (167)
+.+|+|.+.+|+.|.- .+...+.||.|++-.
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk 75 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVK 75 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeechHH
Confidence 5899999999999973 577899999998754
No 244
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=72.22 E-value=8.4 Score=31.99 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=7.1
Q ss_pred HHHHHHhhhheecccC
Q 031038 23 ATLVFFGLRWYKKHDH 38 (167)
Q Consensus 23 i~~~~~~~~~~r~~~~ 38 (167)
++++.-+++|||+||+
T Consensus 28 l~~lA~~lkRRr~kkk 43 (514)
T PF10265_consen 28 LIFLAHYLKRRRRKKK 43 (514)
T ss_pred HHHHHHHHHHhhcccc
Confidence 3444444444444433
No 245
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=72.20 E-value=5.2 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEe
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVL 149 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l 149 (167)
..||+|+||..+.|+= =++..||+|--
T Consensus 34 kKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 34 KKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred cccccCcceeeecccccccCceEEEEec
Confidence 4899999999999963 46789999975
No 246
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=71.85 E-value=7 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=13.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
++-..+.+++..+++++++.+++.+|
T Consensus 27 lg~~~~~~~~~~~l~~~~~~~~~~~~ 52 (55)
T PF03988_consen 27 LGYLISTLIFAALLAVVLALWYRSKR 52 (55)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555555555555555554443
No 247
>PF14979 TMEM52: Transmembrane 52
Probab=71.82 E-value=29 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=11.8
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhh
Q 031038 8 VIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
+-|.+++-+++++++..+...|++
T Consensus 20 WyIwLill~~~llLLCG~ta~C~r 43 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLTASCVR 43 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554555555444443
No 248
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=71.74 E-value=5.4 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=13.3
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhh
Q 031038 7 LVIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
..++++++.+++++.+++++..++.
T Consensus 29 ~~avaVviPl~L~LCiLvl~yai~~ 53 (74)
T PF11857_consen 29 VNAVAVVIPLVLLLCILVLIYAIFQ 53 (74)
T ss_pred eeEEEEeHHHHHHHHHHHHHHHhhe
Confidence 3456666666665544444444443
No 249
>PF15345 TMEM51: Transmembrane protein 51
Probab=71.71 E-value=3.5 Score=30.39 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.9
Q ss_pred ceeehhhHHHHH
Q 031038 7 LVIIGICVGLAL 18 (167)
Q Consensus 7 ~~ii~ii~g~~~ 18 (167)
..++.+++|+.+
T Consensus 58 ~SVAyVLVG~Gv 69 (233)
T PF15345_consen 58 FSVAYVLVGSGV 69 (233)
T ss_pred EEEEEehhhHHH
Confidence 345666666644
No 250
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=71.70 E-value=3.5 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHH-HHHhhhheecccC
Q 031038 11 GICVGLALGILIATL-VFFGLRWYKKHDH 38 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~-~~~~~~~~r~~~~ 38 (167)
=||+|+++-++++++ +++++|+.+|+++
T Consensus 270 WII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred EEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 345666665555544 4455555565555
No 251
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=70.49 E-value=1.4 Score=35.86 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
.++|++++++++++++++++.+.++|+.++
T Consensus 357 vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 357 VVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 444555554444444444444444444433
No 252
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=70.19 E-value=1.4 Score=34.78 Aligned_cols=13 Identities=54% Similarity=0.899 Sum_probs=0.0
Q ss_pred cceeehhhHHHHH
Q 031038 6 DLVIIGICVGLAL 18 (167)
Q Consensus 6 ~~~ii~ii~g~~~ 18 (167)
...|.||++|+++
T Consensus 9 VLTITgIcvaLlV 21 (404)
T PF02158_consen 9 VLTITGICVALLV 21 (404)
T ss_dssp -------------
T ss_pred hhhhhhhhHHHHH
Confidence 3445565555444
No 253
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.05 E-value=5.7 Score=31.37 Aligned_cols=41 Identities=32% Similarity=0.626 Sum_probs=29.1
Q ss_pred CccCHHHHHHHhhhhhhhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 107 PRYAYKDIQKATQNFTNILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 107 ~~~~~~~l~~~~~~f~~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
..++.++. +|..+||+|.||.|....= ..|...|+|.|+..
T Consensus 163 ~kvTm~dF-----dfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKe 204 (516)
T KOG0690|consen 163 NKVTMEDF-----DFLKVLGKGTFGKVILCREKATGKLYAIKILKKE 204 (516)
T ss_pred ceeccchh-----hHHHHhcCCccceEEEEeecccCceeehhhhhhh
Confidence 34555554 3446999999999986654 35678899998654
No 254
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=69.99 E-value=8.4 Score=21.89 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=15.6
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhhe
Q 031038 9 IIGICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
++.+++++.+++.++++.+|+|--+
T Consensus 3 ~l~~Lipvsi~l~~v~l~~flWavk 27 (58)
T COG3197 3 ILYILIPVSILLGAVGLGAFLWAVK 27 (58)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666777777643
No 255
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=68.99 E-value=5.2 Score=35.30 Aligned_cols=32 Identities=34% Similarity=0.757 Sum_probs=27.1
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSH 154 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~ 154 (167)
..+|.|.+|.||++.= .+|+..|+|++.....
T Consensus 25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d 57 (953)
T KOG0587|consen 25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED 57 (953)
T ss_pred EEEeeccceeEEEEeeeecCceeeeEeecCCcc
Confidence 6899999999999975 6889999999976543
No 256
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=68.65 E-value=5.7 Score=32.04 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=3.3
Q ss_pred ehhhHHHHH
Q 031038 10 IGICVGLAL 18 (167)
Q Consensus 10 i~ii~g~~~ 18 (167)
++.+.++.+
T Consensus 22 la~v~~~~l 30 (406)
T PF04906_consen 22 LASVAAACL 30 (406)
T ss_pred HHHHHHHHH
Confidence 333333333
No 257
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=68.50 E-value=17 Score=21.38 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=4.1
Q ss_pred HHHHHhhhhee
Q 031038 24 TLVFFGLRWYK 34 (167)
Q Consensus 24 ~~~~~~~~~~r 34 (167)
++++...+.|+
T Consensus 16 ~lIlY~iYnr~ 26 (68)
T PF05961_consen 16 GLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHhcc
Confidence 33333334333
No 258
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=68.38 E-value=30 Score=34.74 Aligned_cols=11 Identities=27% Similarity=0.126 Sum_probs=4.5
Q ss_pred HHHHHhhhhee
Q 031038 24 TLVFFGLRWYK 34 (167)
Q Consensus 24 ~~~~~~~~~~r 34 (167)
++.+|+.||++
T Consensus 4008 lvvlf~~crKk 4018 (4289)
T KOG1219|consen 4008 LVVLFWKCRKK 4018 (4289)
T ss_pred HHHHHHhhhhh
Confidence 33344444443
No 259
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=68.04 E-value=6.9 Score=31.09 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 031038 15 GLALGILI 22 (167)
Q Consensus 15 g~~~~v~~ 22 (167)
++++++++
T Consensus 305 ~~~vli~v 312 (361)
T PF12259_consen 305 GAIVLIIV 312 (361)
T ss_pred HHHHHHHH
Confidence 33333333
No 260
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=67.90 E-value=4.5 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhheec
Q 031038 21 LIATLVFFGLRWYKK 35 (167)
Q Consensus 21 ~~i~~~~~~~~~~r~ 35 (167)
+++.++.+++++|++
T Consensus 85 ~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 85 LILGVIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444445555555554
No 261
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=67.87 E-value=8.9 Score=23.15 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhhh
Q 031038 17 ALGILIATLVFFGLR 31 (167)
Q Consensus 17 ~~~v~~i~~~~~~~~ 31 (167)
++++++++.+.++..
T Consensus 11 ivf~ifVap~WL~lH 25 (75)
T PF06667_consen 11 IVFMIFVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334433333333
No 262
>PRK09458 pspB phage shock protein B; Provisional
Probab=67.40 E-value=11 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHhhhheecc
Q 031038 13 CVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
.+.+++++++++-+.+++..+.|+
T Consensus 7 ~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 7 AIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHhHHHHHHHHHHHHHHHhhcccc
Confidence 334444444444444444433333
No 263
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=66.94 E-value=6 Score=31.61 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhee
Q 031038 12 ICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+++..++++++++++.+++|++|
T Consensus 289 l~iPl~i~llL~llLs~Imc~rR 311 (386)
T PF05510_consen 289 LAIPLIIALLLLLLLSYIMCCRR 311 (386)
T ss_pred HHHHHHHHHHHHHHHHHHheech
Confidence 33333333333333333333333
No 264
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=66.83 E-value=3.6 Score=34.55 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=34.2
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc--CCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS--DSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~--~~~~~~~~F~~e~~ 165 (167)
..||.|+...||+....+.+.+|+|+... ...+...-|.+|++
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~ 411 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIA 411 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHH
Confidence 48999999999999998888889988743 33344577988875
No 265
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=66.46 E-value=5.9 Score=33.60 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=23.9
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l~~ 151 (167)
..+|+|+||.|+.+... +...|.+|.+..
T Consensus 567 q~lG~GAyGkV~lai~K~n~~eVViK~I~K 596 (772)
T KOG1152|consen 567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFK 596 (772)
T ss_pred eeccccccceEEEeeecccceEEEeeehhh
Confidence 68999999999999994 456789998743
No 266
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.26 E-value=0.43 Score=36.08 Aligned_cols=27 Identities=41% Similarity=0.689 Sum_probs=22.5
Q ss_pred hhccccccccEEEEEcC-CCcEEEEEEe
Q 031038 123 NILGQGAFGPVYKATMP-SGGVAAIKVL 149 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~-~g~~vavk~l 149 (167)
+.+|+|.||+||++.-. .|..||+|+.
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkv 50 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKV 50 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHH
Confidence 38999999999999884 4667888875
No 267
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=66.14 E-value=6.3 Score=34.73 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=5.1
Q ss_pred ehhhHHHHHHHH
Q 031038 10 IGICVGLALGIL 21 (167)
Q Consensus 10 i~ii~g~~~~v~ 21 (167)
+.+++|++.+++
T Consensus 95 v~~~i~ll~~il 106 (806)
T PF05478_consen 95 VCAVIGLLFIIL 106 (806)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 268
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=65.45 E-value=9.8 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 031038 17 ALGILIATLVFFGL 30 (167)
Q Consensus 17 ~~~v~~i~~~~~~~ 30 (167)
+++++++.+++||+
T Consensus 17 llflv~imliif~f 30 (43)
T PF11395_consen 17 LLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 269
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=65.02 E-value=5.3 Score=32.94 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=24.5
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~ 151 (167)
..||+|.||.|-++.- .++..+|+|.|..
T Consensus 103 ~eiG~G~yGkVkLar~~~~~~l~AiKil~K 132 (576)
T KOG0585|consen 103 KEIGSGQYGKVKLARDEVDGKLYAIKILPK 132 (576)
T ss_pred hhhcCCccceEEEEeecCCCcEEEEEeech
Confidence 5899999999988875 4678999999954
No 270
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=64.98 E-value=2.6 Score=32.93 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=23.4
Q ss_pred hhccccccccEEEEEcCC---Cc--EEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATMPS---GG--VAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~---g~--~vavk~l~~~~ 153 (167)
..||+|.||.||+++-.+ .. ..|+|+++...
T Consensus 30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~k 65 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEK 65 (438)
T ss_pred ceecccccceeeEeeeccCCcccchhhHHHHHhccC
Confidence 478999999999996522 22 57999997653
No 271
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=64.68 E-value=12 Score=17.90 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.6
Q ss_pred ehhhHHHHHHH
Q 031038 10 IGICVGLALGI 20 (167)
Q Consensus 10 i~ii~g~~~~v 20 (167)
++++.|+++++
T Consensus 3 ~~vi~g~llv~ 13 (29)
T PRK14750 3 FSIVCGALLVL 13 (29)
T ss_pred HHHHHHHHHHH
Confidence 35555655433
No 272
>PHA03281 envelope glycoprotein E; Provisional
Probab=64.60 E-value=22 Score=29.79 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=11.9
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhh
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
+..+.++++|-++++++++++++.+|
T Consensus 552 p~~~y~~l~~~~a~~~ll~l~~~~~c 577 (642)
T PHA03281 552 PFKRYAAITGGFAALALLCLAIALIC 577 (642)
T ss_pred CeEeehhhhhhhHHHHHHHHHHHHHH
Confidence 34455555554444444444444333
No 273
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=64.60 E-value=5.8 Score=32.53 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=19.4
Q ss_pred cCCcceeehhhHHHHHHHHHHHHHHHhhh
Q 031038 3 HKSDLVIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 3 ~~s~~~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
+.|...++|++++++++..++++.++..+
T Consensus 544 ~~s~~av~gllv~~~~i~tvivisl~mlr 572 (615)
T KOG3540|consen 544 GRSASAVIGLLVSAVFIATVIVISLVMLR 572 (615)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788877777766666665555555
No 274
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=64.40 E-value=27 Score=21.49 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=15.7
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
.++|+.=+|..++++++.+++.+..+
T Consensus 37 sIVI~FWv~LA~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 37 SIVIAFWVSLAAFVVFLFLILLYMSW 62 (90)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666666666666665554
No 275
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.30 E-value=8.4 Score=28.77 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhhee
Q 031038 20 ILIATLVFFGLRWYK 34 (167)
Q Consensus 20 v~~i~~~~~~~~~~r 34 (167)
+++++++++++++++
T Consensus 12 ~llV~~i~l~l~~r~ 26 (299)
T KOG3054|consen 12 ALLVAVILLFLWKRR 26 (299)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333444443333
No 276
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=64.14 E-value=3.8 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhheec
Q 031038 21 LIATLVFFGLRWYKK 35 (167)
Q Consensus 21 ~~i~~~~~~~~~~r~ 35 (167)
++.++.++..+|+|+
T Consensus 33 ll~c~c~~~~~r~r~ 47 (102)
T PF11669_consen 33 LLSCCCACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 277
>PRK00523 hypothetical protein; Provisional
Probab=64.09 E-value=4.9 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 031038 11 GICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
.|+++++++++-+++.+|+.++
T Consensus 7 ~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333444444443
No 278
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=63.78 E-value=2.3 Score=32.18 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheecc
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
.-+++.-+++|++.+..+++|+||||.
T Consensus 228 f~lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 228 FYLLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ---------------------------
T ss_pred ccccccchhhhhhhccceeeecccccc
Confidence 333444444444444444444444433
No 279
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=63.50 E-value=9.3 Score=23.48 Aligned_cols=6 Identities=0% Similarity=-0.535 Sum_probs=2.3
Q ss_pred HHHhhh
Q 031038 26 VFFGLR 31 (167)
Q Consensus 26 ~~~~~~ 31 (167)
.++++|
T Consensus 35 ~vvL~C 40 (87)
T PF11980_consen 35 GVVLYC 40 (87)
T ss_pred HHHHhh
Confidence 333333
No 280
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=62.64 E-value=12 Score=22.94 Aligned_cols=8 Identities=0% Similarity=0.048 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 031038 24 TLVFFGLR 31 (167)
Q Consensus 24 ~~~~~~~~ 31 (167)
+++.+.+.
T Consensus 36 vvL~C~r~ 43 (87)
T PF11980_consen 36 VVLYCHRF 43 (87)
T ss_pred HHHhhhhh
Confidence 44444333
No 281
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.45 E-value=7.3 Score=23.06 Aligned_cols=22 Identities=18% Similarity=-0.112 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 031038 11 GICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
+|++.++++++.++..+|+.++
T Consensus 6 ail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333444444443
No 282
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=60.95 E-value=11 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=13.5
Q ss_pred CcceeehhhHHHHH-HHHHHHHHHHhhh
Q 031038 5 SDLVIIGICVGLAL-GILIATLVFFGLR 31 (167)
Q Consensus 5 s~~~ii~ii~g~~~-~v~~i~~~~~~~~ 31 (167)
-+|-|+.|.+..++ .+-+.+-++||.+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556665555444 3334444555553
No 283
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=60.73 E-value=15 Score=17.39 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhhee
Q 031038 20 ILIATLVFFGLRWYK 34 (167)
Q Consensus 20 v~~i~~~~~~~~~~r 34 (167)
+++++..++.+++|+
T Consensus 12 ~Lll~aG~~~~~rR~ 26 (27)
T TIGR03867 12 ALLLAAGLLGFARRR 26 (27)
T ss_pred HHHHHHHhhhHHhhc
Confidence 334444444444443
No 284
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=60.61 E-value=14 Score=19.93 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=7.0
Q ss_pred eehhhHHHHHHHHH
Q 031038 9 IIGICVGLALGILI 22 (167)
Q Consensus 9 ii~ii~g~~~~v~~ 22 (167)
++.|++|+++++++
T Consensus 5 V~~iilg~~ll~~L 18 (49)
T PF05624_consen 5 VVLIILGALLLLLL 18 (49)
T ss_pred EeHHHHHHHHHHHH
Confidence 45555565554333
No 285
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=60.26 E-value=19 Score=23.97 Aligned_cols=16 Identities=0% Similarity=0.009 Sum_probs=5.9
Q ss_pred cceeehhhHHHHHHHH
Q 031038 6 DLVIIGICVGLALGIL 21 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~ 21 (167)
+|-...++++++++++
T Consensus 34 pWNysiL~Ls~vvlvi 49 (125)
T PF15048_consen 34 PWNYSILALSFVVLVI 49 (125)
T ss_pred CcchHHHHHHHHHHHH
Confidence 3433333333333333
No 286
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=60.08 E-value=13 Score=22.99 Aligned_cols=22 Identities=5% Similarity=0.076 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 031038 11 GICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
.+++++++++++++++++++.-
T Consensus 38 LVic~~lVfVii~lFi~ll~~i 59 (84)
T PF06143_consen 38 LVICCFLVFVIIVLFILLLYNI 59 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555555543
No 287
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=60.00 E-value=4.7 Score=26.81 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhhee
Q 031038 18 LGILIATLVFFGLRWYK 34 (167)
Q Consensus 18 ~~v~~i~~~~~~~~~~r 34 (167)
++++++++.++||.-++
T Consensus 90 ~GLmlL~~~alcW~~~~ 106 (129)
T PF15099_consen 90 LGLMLLACSALCWKPII 106 (129)
T ss_pred HHHHHHHhhhheehhhh
Confidence 34555555656665433
No 288
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=59.98 E-value=2.9 Score=33.09 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHH-H-hhhheecc
Q 031038 11 GICVGLALGILIATLVF-F-GLRWYKKH 36 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~-~-~~~~~r~~ 36 (167)
.-|.||+++++++.++. + +||+-||+
T Consensus 10 LTITgIcvaLlVVGi~Cvv~aYCKTKKQ 37 (404)
T PF02158_consen 10 LTITGICVALLVVGIVCVVDAYCKTKKQ 37 (404)
T ss_dssp ----------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 34567676666664443 3 44544443
No 289
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=59.65 E-value=20 Score=26.47 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=4.6
Q ss_pred eeehhhHHHHH
Q 031038 8 VIIGICVGLAL 18 (167)
Q Consensus 8 ~ii~ii~g~~~ 18 (167)
+|+.+++++++
T Consensus 189 vilpvvIaliV 199 (259)
T PF07010_consen 189 VILPVVIALIV 199 (259)
T ss_pred hhHHHHHHHHH
Confidence 34444444443
No 290
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=58.95 E-value=23 Score=18.06 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.6
Q ss_pred ehhhHHHHH
Q 031038 10 IGICVGLAL 18 (167)
Q Consensus 10 i~ii~g~~~ 18 (167)
.||++|.+.
T Consensus 7 ~GiVlGli~ 15 (37)
T PF02529_consen 7 SGIVLGLIP 15 (37)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHhHH
Confidence 455555444
No 291
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=58.89 E-value=16 Score=33.25 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 031038 15 GLALGILIA 23 (167)
Q Consensus 15 g~~~~v~~i 23 (167)
+++++++++
T Consensus 984 svl~GLLlL 992 (1030)
T KOG3637|consen 984 SVLGGLLLL 992 (1030)
T ss_pred HHHHHHHHH
Confidence 334434333
No 292
>PRK01844 hypothetical protein; Provisional
Probab=58.88 E-value=8.2 Score=23.02 Aligned_cols=22 Identities=36% Similarity=0.378 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhe
Q 031038 12 ICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
|+++++++++-+++.+|+.+++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333334444444433
No 293
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=58.84 E-value=6.9 Score=32.99 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.6
Q ss_pred ehhhHHHHHHHHHHHHHHHh
Q 031038 10 IGICVGLALGILIATLVFFG 29 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~ 29 (167)
+.++++++++++++.++.++
T Consensus 3 ~~~ii~i~ii~i~~~~~~~~ 22 (569)
T PRK04778 3 IYLIIAIVVIIIIAYLAGLI 22 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34445555444444433333
No 294
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=58.73 E-value=1.3 Score=36.21 Aligned_cols=41 Identities=32% Similarity=0.587 Sum_probs=28.0
Q ss_pred CHHHHHHHh-hhhh--hhccccccccEEEEEcC-CCcEEEEEEec
Q 031038 110 AYKDIQKAT-QNFT--NILGQGAFGPVYKATMP-SGGVAAIKVLA 150 (167)
Q Consensus 110 ~~~~l~~~~-~~f~--~~lg~g~~g~vy~g~l~-~g~~vavk~l~ 150 (167)
.+.|++-.| +.|. .+||+|+||.||--+.. .|...|.|+|+
T Consensus 175 K~lE~qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~ 219 (591)
T KOG0986|consen 175 KWLELQPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD 219 (591)
T ss_pred HHHHhhhccccceeeeEEEecccccceeEEEEecchhhHHHHHHH
Confidence 344443333 3354 79999999999987774 46667888774
No 295
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=58.62 E-value=13 Score=28.57 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=26.5
Q ss_pred hhhhccccccccEEEEEcCCCcEEEEEEec
Q 031038 121 FTNILGQGAFGPVYKATMPSGGVAAIKVLA 150 (167)
Q Consensus 121 f~~~lg~g~~g~vy~g~l~~g~~vavk~l~ 150 (167)
+.+.||.|.=+.||.|..++|..++||--+
T Consensus 95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR 124 (304)
T COG0478 95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHR 124 (304)
T ss_pred hccccccCccceEEEEECCCCCEEEEEEee
Confidence 347999999999999999999999999653
No 296
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=58.31 E-value=12 Score=30.75 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=9.5
Q ss_pred eehhhHHHHHHHHHHHHHHHhh
Q 031038 9 IIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
+++.+.++++++.++.+++.++
T Consensus 45 lla~l~aa~l~l~Ll~ll~yli 66 (526)
T KOG4433|consen 45 LLAALAAACLGLSLLFLLFYLI 66 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 297
>PF15050 SCIMP: SCIMP protein
Probab=58.13 E-value=16 Score=24.06 Aligned_cols=24 Identities=0% Similarity=-0.035 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhhheeccc
Q 031038 14 VGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
+-+.+++.+++.+++-|..|+.++
T Consensus 17 I~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 333444444455555555554433
No 298
>PHA03291 envelope glycoprotein I; Provisional
Probab=57.46 E-value=8.3 Score=30.33 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=8.8
Q ss_pred ceeehhhHHHHHHHHHH
Q 031038 7 LVIIGICVGLALGILIA 23 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i 23 (167)
.+-|+|-+.+++.|++-
T Consensus 288 iiQiAIPasii~cV~lG 304 (401)
T PHA03291 288 IIQIAIPASIIACVFLG 304 (401)
T ss_pred hheeccchHHHHHhhhh
Confidence 34456655555544443
No 299
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=57.35 E-value=12 Score=31.60 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
...|+|-|++|..|.= .-|+.||||++.++
T Consensus 438 ~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN 468 (752)
T KOG0670|consen 438 GYTGKGVFSTVVRARDQARGQEVAIKIIRNN 468 (752)
T ss_pred eccccceeeeeeeccccCCCCeeEEEEeecc
Confidence 3568999999998875 34779999999654
No 300
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=57.19 E-value=9.7 Score=22.49 Aligned_cols=7 Identities=0% Similarity=-0.321 Sum_probs=2.6
Q ss_pred Hhhhhee
Q 031038 28 FGLRWYK 34 (167)
Q Consensus 28 ~~~~~~r 34 (167)
+|+..+|
T Consensus 16 lC~lsrR 22 (74)
T PF05083_consen 16 LCRLSRR 22 (74)
T ss_pred HHHHHhh
Confidence 3333333
No 301
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=56.63 E-value=7.9 Score=28.44 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=9.4
Q ss_pred CccCHHHHHHHhhh
Q 031038 107 PRYAYKDIQKATQN 120 (167)
Q Consensus 107 ~~~~~~~l~~~~~~ 120 (167)
....|.++..|..+
T Consensus 148 ~S~DW~Em~~Ais~ 161 (217)
T PF07423_consen 148 GSVDWNEMLKAISY 161 (217)
T ss_pred CCcCHHHHHHHHHH
Confidence 34578888887633
No 302
>PF14979 TMEM52: Transmembrane 52
Probab=55.88 E-value=21 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.081 Sum_probs=12.5
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
|+++.+++..++--+...++=|||.||+
T Consensus 23 wLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 23 WLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444443344444444444444
No 303
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=55.42 E-value=26 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhe
Q 031038 11 GICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
+|..++.+ +++++++.++||+|
T Consensus 302 aIpl~Val-ll~~~La~imc~rr 323 (449)
T KOG4482|consen 302 AIPLGVAL-LLVLALAYIMCCRR 323 (449)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhh
Confidence 33444333 33333333333433
No 304
>PRK01741 cell division protein ZipA; Provisional
Probab=54.51 E-value=11 Score=29.46 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=13.1
Q ss_pred eeehhhHHHHHHHHHHHHHHHh
Q 031038 8 VIIGICVGLALGILIATLVFFG 29 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~ 29 (167)
-+|.||+|+++++++++-.++-
T Consensus 4 n~iliILg~lal~~Lv~hgiWs 25 (332)
T PRK01741 4 NTILIILGILALVALVAHGIWS 25 (332)
T ss_pred eehHHHHHHHHHHHHHHhhhhh
Confidence 3567777777755555544433
No 305
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=53.82 E-value=46 Score=22.84 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhheecccCcc
Q 031038 14 VGLALGILIATLVFFGLRWYKKHDHFR 40 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~~~r~~~~~~ 40 (167)
...+.+++++++++++++++.+||++.
T Consensus 33 tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 334445556666677777888888754
No 306
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=53.57 E-value=26 Score=16.84 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=6.9
Q ss_pred ehhhHHHHHHHHHH
Q 031038 10 IGICVGLALGILIA 23 (167)
Q Consensus 10 i~ii~g~~~~v~~i 23 (167)
+++++|+++.++++
T Consensus 3 ~~vi~G~ilv~lLl 16 (29)
T PRK14748 3 AGVITGVLLVFLLL 16 (29)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555655544433
No 307
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=52.48 E-value=31 Score=31.60 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=17.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhhe
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
..+.++++|+++.+.++++++++...+
T Consensus 1512 ssttGmVvGIvaAaaLcILilL~am~k 1538 (1591)
T KOG3514|consen 1512 SSTTGMVVGIVAAAALCILILLYAMYK 1538 (1591)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhccc
Confidence 346788888887666655555554433
No 308
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=52.40 E-value=33 Score=20.13 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q 031038 13 CVGLALGI 20 (167)
Q Consensus 13 i~g~~~~v 20 (167)
+.|.++++
T Consensus 13 i~G~LIAv 20 (66)
T PF13179_consen 13 ITGMLIAV 20 (66)
T ss_pred hHhHHHHH
Confidence 44544433
No 309
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.32 E-value=13 Score=31.42 Aligned_cols=42 Identities=31% Similarity=0.387 Sum_probs=28.4
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
-||+|.|+.|-.+.- -.|..||||.++... ........+|++
T Consensus 25 TlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVR 69 (864)
T KOG4717|consen 25 TLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVR 69 (864)
T ss_pred hhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHH
Confidence 789999998876643 267899999996532 222344555554
No 310
>PHA02692 hypothetical protein; Provisional
Probab=52.12 E-value=23 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=8.5
Q ss_pred eehhhHHHHHHHHHHHHHHHh
Q 031038 9 IIGICVGLALGILIATLVFFG 29 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~ 29 (167)
...++++++++++++++++++
T Consensus 46 ~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 46 TTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444344434443444333
No 311
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=52.03 E-value=24 Score=17.91 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=4.2
Q ss_pred ehhhHHHHH
Q 031038 10 IGICVGLAL 18 (167)
Q Consensus 10 i~ii~g~~~ 18 (167)
-||++|.+-
T Consensus 7 ~GiVLGlip 15 (37)
T CHL00008 7 FGIVLGLIP 15 (37)
T ss_pred hhHHHHhHH
Confidence 345555443
No 312
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=51.64 E-value=11 Score=28.99 Aligned_cols=10 Identities=50% Similarity=0.564 Sum_probs=5.6
Q ss_pred eehhhHHHHH
Q 031038 9 IIGICVGLAL 18 (167)
Q Consensus 9 ii~ii~g~~~ 18 (167)
++.||+|+++
T Consensus 4 ~iLIIvGaia 13 (284)
T TIGR02205 4 IILIIVGILA 13 (284)
T ss_pred ehHHHHHHHH
Confidence 4556666554
No 313
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=51.54 E-value=18 Score=27.87 Aligned_cols=14 Identities=36% Similarity=0.221 Sum_probs=7.0
Q ss_pred ehhhHHHHHHHHHH
Q 031038 10 IGICVGLALGILIA 23 (167)
Q Consensus 10 i~ii~g~~~~v~~i 23 (167)
|.||+|+++++.++
T Consensus 7 ILIIvG~IAIiaLL 20 (324)
T COG3115 7 ILIIVGAIAIIALL 20 (324)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556655544433
No 314
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=51.45 E-value=3.8 Score=29.88 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 031038 12 ICVGLALGILIA 23 (167)
Q Consensus 12 ii~g~~~~v~~i 23 (167)
|++|++++++.+
T Consensus 39 I~iaiVAG~~tV 50 (221)
T PF08374_consen 39 IMIAIVAGIMTV 50 (221)
T ss_pred eeeeeecchhhh
Confidence 344444444333
No 315
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=51.23 E-value=5.1 Score=30.84 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc--CCcccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS--DSHQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~--~~~~~~~~F~~e~ 164 (167)
..|.+...|+.|+|.++. ..+++|.|+- -.....++|..|.
T Consensus 196 tkl~e~hsgelwrgrwqg-ndivakil~vr~~t~risrdfneef 238 (448)
T KOG0195|consen 196 TKLAESHSGELWRGRWQG-NDIVAKILNVREVTARISRDFNEEF 238 (448)
T ss_pred hhhccCCCcccccccccC-cchhhhhhhhhhcchhhcchhhhhC
Confidence 378899999999999954 5677777743 2222346777765
No 316
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=51.15 E-value=15 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=16.2
Q ss_pred cceeehhhHHHHHHHHHHHHHHH
Q 031038 6 DLVIIGICVGLALGILIATLVFF 28 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~ 28 (167)
.....++|.||+.+|+++++..+
T Consensus 110 ~~~~~g~IaGIvsav~valvGAv 132 (169)
T PF12301_consen 110 GEAEAGTIAGIVSAVVVALVGAV 132 (169)
T ss_pred cCcccchhhhHHHHHHHHHHHHH
Confidence 35678999999987766555444
No 317
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=51.07 E-value=11 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhheecccC
Q 031038 19 GILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 19 ~v~~i~~~~~~~~~~r~~~~ 38 (167)
+++++++++++++.+|++++
T Consensus 28 ~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 28 ALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444555555566665554
No 318
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=50.73 E-value=28 Score=17.70 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=4.1
Q ss_pred ehhhHHHHH
Q 031038 10 IGICVGLAL 18 (167)
Q Consensus 10 i~ii~g~~~ 18 (167)
-||++|.+-
T Consensus 7 ~GiVLGlip 15 (37)
T PRK00665 7 CGIVLGLIP 15 (37)
T ss_pred hhHHHHhHH
Confidence 345555443
No 319
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=50.71 E-value=15 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheec
Q 031038 11 GICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
..++|.+.+++.++++++.++++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ry~~ 69 (73)
T PF02656_consen 45 SKVLGLLLIVLGLLTLIYGIYRYRR 69 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444444444443
No 320
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=50.32 E-value=28 Score=31.76 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=20.8
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
++.|+||+.++|-++++++++++++-+-+.||.+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r 1009 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNR 1009 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 4567777666666666777776666554444333
No 321
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=49.46 E-value=4.7 Score=34.63 Aligned_cols=31 Identities=42% Similarity=0.694 Sum_probs=25.3
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS 153 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~ 153 (167)
..+|.|.+|.|||++= ..+...|||.++...
T Consensus 21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep 52 (829)
T KOG0576|consen 21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEP 52 (829)
T ss_pred eeecCCcccchhhhcccccCchhhheeeeccC
Confidence 4789999999999976 567788999886543
No 322
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.46 E-value=15 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031038 14 VGLALGILIATLVFFGLR 31 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~ 31 (167)
+++++++++++++.++|.
T Consensus 7 v~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444445544
No 323
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=49.27 E-value=15 Score=26.65 Aligned_cols=17 Identities=35% Similarity=0.794 Sum_probs=15.1
Q ss_pred hhhccccccccEEEEEc
Q 031038 122 TNILGQGAFGPVYKATM 138 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l 138 (167)
.+.||+|+||.||+|..
T Consensus 11 ~~~lg~g~~g~v~~~~~ 27 (254)
T cd05083 11 GEIIGEGEFGAVLQGEY 27 (254)
T ss_pred eeeeccCCCCceEeccc
Confidence 34899999999999987
No 324
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=49.10 E-value=12 Score=27.57 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.9
Q ss_pred EEEEEc
Q 031038 133 VYKATM 138 (167)
Q Consensus 133 vy~g~l 138 (167)
+|.|..
T Consensus 190 ~y~g~C 195 (226)
T TIGR01433 190 VYDGIS 195 (226)
T ss_pred EEEEEc
Confidence 455543
No 325
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=49.00 E-value=27 Score=26.86 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=29.9
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEeccCC---cccHHHHHHHH
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLASDS---HQGEKEFQTEV 164 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~~~---~~~~~~F~~e~ 164 (167)
..||.|.++.||.++-.+ |+..|||..-... ....+++.+|.
T Consensus 18 ~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~ 63 (288)
T PF14531_consen 18 RIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQ 63 (288)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHH
T ss_pred cccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHH
Confidence 589999999999999854 7899999873322 22235565554
No 326
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=48.90 E-value=18 Score=31.42 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=13.8
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhh
Q 031038 8 VIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
.+++|++|++.+++++.+++++++
T Consensus 712 ~~~~i~lgvv~~ivligl~llliw 735 (783)
T KOG1226|consen 712 NILAIVLGVVAGIVLIGLALLLIW 735 (783)
T ss_pred cEeeehHHHHHHHHHHHHHHHHHH
Confidence 456667776666665555444443
No 327
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=48.82 E-value=34 Score=19.09 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=8.9
Q ss_pred eeehhhHHHHHHHHHHHH
Q 031038 8 VIIGICVGLALGILIATL 25 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~ 25 (167)
.+||..+|+.+...++++
T Consensus 23 a~IGtalGvaisAgFLaL 40 (61)
T PF14986_consen 23 AIIGTALGVAISAGFLAL 40 (61)
T ss_pred eeehhHHHHHHHHHHHHH
Confidence 455666665544433333
No 328
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=48.67 E-value=27 Score=26.88 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=10.0
Q ss_pred HHHHHHHhhhheecccC
Q 031038 22 IATLVFFGLRWYKKHDH 38 (167)
Q Consensus 22 ~i~~~~~~~~~~r~~~~ 38 (167)
++.+++..|+|.|.++.
T Consensus 17 i~~il~~~~~r~r~~~g 33 (293)
T PRK00269 17 IAGILFDGWRRMRGGKG 33 (293)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 33466667777664443
No 329
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=48.64 E-value=1.2e+02 Score=24.44 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhheecccC
Q 031038 16 LALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 16 ~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
++++++++++++++|.-++.+++
T Consensus 34 ~v~~~~~~~~~~~~w~~~~~~~~ 56 (376)
T PRK13855 34 IVAGLVLALSLSLIWLGGRSKKE 56 (376)
T ss_pred hHHHHHHHHHHHHHHhccCCCcc
Confidence 34444555555666665544443
No 330
>PHA03164 hypothetical protein; Provisional
Probab=47.59 E-value=39 Score=20.37 Aligned_cols=8 Identities=25% Similarity=0.683 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 031038 21 LIATLVFF 28 (167)
Q Consensus 21 ~~i~~~~~ 28 (167)
++++++++
T Consensus 70 mILfiifv 77 (88)
T PHA03164 70 MILFIIFV 77 (88)
T ss_pred HHHHHHHH
Confidence 33333333
No 331
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=47.56 E-value=24 Score=31.01 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHhh-hheecccCcccCCCCC
Q 031038 13 CVGLALGILIATLVFFGL-RWYKKHDHFRRCSNER 46 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~-~~~r~~~~~~~~~~~~ 46 (167)
+++++.++++++++++|. ++++|||..++....+
T Consensus 275 Ll~ILG~~~livl~lL~vLl~yCrrkc~~~r~~~~ 309 (807)
T PF10577_consen 275 LLAILGGTALIVLILLCVLLCYCRRKCLKPRQRHR 309 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Confidence 344554444444444444 5667777776665443
No 332
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=47.52 E-value=7.5 Score=21.94 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 031038 12 ICVGLALGILIATLVFFG 29 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~ 29 (167)
|++.+++++++++++++|
T Consensus 33 VVlP~l~~~~~~Ivv~vy 50 (56)
T PF15012_consen 33 VVLPTLAAVFLFIVVFVY 50 (56)
T ss_pred EehhHHHHHHHHHhheeE
Confidence 444545444444444333
No 333
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=46.71 E-value=18 Score=21.07 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=10.3
Q ss_pred eeehhhHHHHHHHHHHHHH
Q 031038 8 VIIGICVGLALGILIATLV 26 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~ 26 (167)
-+.|.++|.++.++++++-
T Consensus 41 ~~~GfaiG~~~AlvLv~ip 59 (64)
T PF09472_consen 41 GIKGFAIGFLFALVLVGIP 59 (64)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4556666666555444443
No 334
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.71 E-value=7.9 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=23.5
Q ss_pred hhccccccccEEEEEcCC-CcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPS-GGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~-g~~vavk~l~~ 151 (167)
.+||+|+|+.|..+.+.. .+..|+|.++.
T Consensus 256 ~vigrgsyakvl~~~~~~t~qiyamkvvkk 285 (593)
T KOG0695|consen 256 RVIGRGSYAKVLLVRLKKTDQIYAMKVVKK 285 (593)
T ss_pred eeecCcchhhhhheehcccceeeehhhHHH
Confidence 689999999999999843 45679988754
No 335
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=46.36 E-value=26 Score=20.69 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=11.5
Q ss_pred eeehhhHHHHHHHHHHHHHH
Q 031038 8 VIIGICVGLALGILIATLVF 27 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~ 27 (167)
-+.|+++|.+..++++.+..
T Consensus 50 ~i~GlaiGfvfA~vLv~ill 69 (73)
T COG4218 50 RIAGLAIGFVFAGVLVGILL 69 (73)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35677777666555544433
No 336
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=45.98 E-value=11 Score=22.21 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=5.3
Q ss_pred ehhhHHHHHHHH
Q 031038 10 IGICVGLALGIL 21 (167)
Q Consensus 10 i~ii~g~~~~v~ 21 (167)
+||+-|++++++
T Consensus 47 iGIlYG~v~Gli 58 (70)
T PF04210_consen 47 IGILYGLVIGLI 58 (70)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 337
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.92 E-value=14 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=14.7
Q ss_pred hccccccccEEEEEc-CCCcEEEEEEec
Q 031038 124 ILGQGAFGPVYKATM-PSGGVAAIKVLA 150 (167)
Q Consensus 124 ~lg~g~~g~vy~g~l-~~g~~vavk~l~ 150 (167)
+|...+-|.|..+.. +++..+=.|-+.
T Consensus 104 lLD~~~nGvVltsI~~Re~s~~YaK~I~ 131 (151)
T PF14584_consen 104 LLDDNNNGVVLTSIHSREESRTYAKPIV 131 (151)
T ss_pred EEeCCCCEEEEEeeecCCCcEEEEEEec
Confidence 444445566665555 345555556553
No 338
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=45.30 E-value=23 Score=25.68 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.3
Q ss_pred hhccccccccEEEEEcC
Q 031038 123 NILGQGAFGPVYKATMP 139 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~ 139 (167)
+.+|.|.||.||++...
T Consensus 12 ~~ig~g~~g~v~~~~~~ 28 (256)
T cd05039 12 ATIGKGEFGDVMLGDYR 28 (256)
T ss_pred eeeecCCCceEEEEEec
Confidence 48999999999999984
No 339
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=44.72 E-value=18 Score=26.21 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=16.4
Q ss_pred hhccccccccEEEEEcCCCc
Q 031038 123 NILGQGAFGPVYKATMPSGG 142 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~ 142 (167)
..||+|+||.||++...+..
T Consensus 12 ~~lg~g~~~~v~~~~~~~~~ 31 (256)
T cd05082 12 QTIGKGEFGDVMLGDYRGNK 31 (256)
T ss_pred eeecccCCCeEEEEEEcCCc
Confidence 48999999999999875433
No 340
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=44.34 E-value=40 Score=17.09 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=11.1
Q ss_pred ehhhHHHHHHHHHHHHHHHhh
Q 031038 10 IGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~ 30 (167)
+|+++|.++++..+.-.+..+
T Consensus 11 ~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 11 LGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 466666666555544444433
No 341
>PF15179 Myc_target_1: Myc target protein 1
Probab=43.94 E-value=29 Score=24.78 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=11.2
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 10 IGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+.+++|.+++.++-+++.+ ..|||
T Consensus 27 vSm~iGLviG~li~~Lltw-lSRRR 50 (197)
T PF15179_consen 27 VSMAIGLVIGALIWALLTW-LSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcc
Confidence 3445555554444444444 44444
No 342
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=43.56 E-value=57 Score=17.99 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.3
Q ss_pred hHHHHH
Q 031038 13 CVGLAL 18 (167)
Q Consensus 13 i~g~~~ 18 (167)
++++++
T Consensus 6 iV~i~i 11 (50)
T PF12606_consen 6 IVSIFI 11 (50)
T ss_pred HHHHHH
Confidence 334333
No 343
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=43.22 E-value=30 Score=25.28 Aligned_cols=28 Identities=36% Similarity=0.748 Sum_probs=24.3
Q ss_pred hhhhhcccccc-ccEEEEEcCCCcEEEEEE
Q 031038 120 NFTNILGQGAF-GPVYKATMPSGGVAAIKV 148 (167)
Q Consensus 120 ~f~~~lg~g~~-g~vy~g~l~~g~~vavk~ 148 (167)
.|...||.|.- |.||+..+ +|...|+|.
T Consensus 40 ~flefLg~g~~~~~V~kv~I-~g~~YALKl 68 (207)
T PF13095_consen 40 EFLEFLGHGSHDGYVFKVEI-DGRIYALKL 68 (207)
T ss_pred eeeeecCCCCceeEEEEEEE-CCeEEEEEE
Confidence 34468999999 99999999 668999999
No 344
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.11 E-value=12 Score=31.51 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 031038 15 GLALGILIATLVFFG 29 (167)
Q Consensus 15 g~~~~v~~i~~~~~~ 29 (167)
|++++++++.++.++
T Consensus 4 ~iivi~l~~~~~~~~ 18 (560)
T PF06160_consen 4 GIIVIVLIIYIIGYI 18 (560)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334433333333333
No 345
>PF14851 FAM176: FAM176 family
Probab=43.00 E-value=31 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=16.8
Q ss_pred eeehhhHHHHHHHHHHHHHHHhh
Q 031038 8 VIIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
.+.||.+|.++++.++++-+.|.
T Consensus 26 Fv~gVC~GLlLtLcllV~risc~ 48 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISCR 48 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhheee
Confidence 46788888888777776666664
No 346
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=42.87 E-value=9.5 Score=30.50 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=24.5
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCCc
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDSH 154 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~~ 154 (167)
..+|+|.||.|..--- ..+..||||.++...+
T Consensus 95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k 127 (415)
T KOG0671|consen 95 DLLGEGTFGKVVECWDRETKEHVALKIIKNVDK 127 (415)
T ss_pred hhhcCCcccceEEEeecCCCceehHHHHHHHHH
Confidence 6899999999986544 2367899999876543
No 347
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=42.46 E-value=46 Score=18.78 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHH
Q 031038 12 ICVGLALGILIATLV 26 (167)
Q Consensus 12 ii~g~~~~v~~i~~~ 26 (167)
|++|++.++++++.+
T Consensus 34 Ii~gii~~~~fV~~L 48 (56)
T PF11174_consen 34 IIVGIILAALFVAGL 48 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 348
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.68 E-value=1.1e+02 Score=25.72 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=25.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccC
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASD 152 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~ 152 (167)
..||=|.|.+||.+-= .+.+.||+|..+..
T Consensus 84 rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA 114 (590)
T KOG1290|consen 84 RKLGWGHFSTVWLAWDTQNKRYVALKVVKSA 114 (590)
T ss_pred EeccccccceeEEEeeccCCeEEEEEEEehh
Confidence 6899999999998853 57789999998654
No 349
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=41.67 E-value=26 Score=24.12 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=9.6
Q ss_pred ccEEEEEcC-CCcEEEEEEe
Q 031038 131 GPVYKATMP-SGGVAAIKVL 149 (167)
Q Consensus 131 g~vy~g~l~-~g~~vavk~l 149 (167)
+.-|+..+. |+....+.+.
T Consensus 116 ~~yYrV~~n~d~~sY~Lek~ 135 (149)
T PF11694_consen 116 DKYYRVIFNDDNNSYTLEKT 135 (149)
T ss_pred CccEEEEEcCCCCeEEEEEE
Confidence 445666663 3344444443
No 350
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=41.26 E-value=40 Score=20.94 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=16.8
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+-+|++.|+..+++..++..++.++-+
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An 78 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRAN 78 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777777776666666555555433
No 351
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=41.00 E-value=20 Score=21.71 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=6.8
Q ss_pred ceeehhhHHHHHHHH
Q 031038 7 LVIIGICVGLALGIL 21 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~ 21 (167)
+++.|+++|++++++
T Consensus 51 GIlYG~viGlli~~i 65 (77)
T PRK01026 51 GILYGLVIGLLIVLV 65 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555444333
No 352
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=40.53 E-value=21 Score=16.77 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=5.6
Q ss_pred HHHHHHHHhhhhee
Q 031038 21 LIATLVFFGLRWYK 34 (167)
Q Consensus 21 ~~i~~~~~~~~~~r 34 (167)
++..+..+.+.+||
T Consensus 10 Ll~gLggl~~~rRR 23 (26)
T TIGR03370 10 LLAGLGGLGAMRRR 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344334444333
No 353
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=40.05 E-value=18 Score=33.76 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=24.0
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEec
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLA 150 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~ 150 (167)
+.||.|-||.||.+.= ++|...|||-++
T Consensus 1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred cccCCcceeeeEEeecCCccchhhhhhhh
Confidence 7899999999998875 678888999774
No 354
>PRK11594 efflux system membrane protein; Provisional
Probab=39.78 E-value=50 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCcCCcceeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 1 MVHKSDLVIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
|.-++...+.|+.+..++..+++++++....+
T Consensus 1 ~~~~~~~~i~Gv~~P~llv~~l~A~~l~~~lr 32 (67)
T PRK11594 1 MSLLPVIVVFGLSFPPIFFELLLSLALFWLVR 32 (67)
T ss_pred CCCcceeeeeeeeHhHHHHHHHHHHHHHHHHH
Confidence 45566777888888877777666666655544
No 355
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.36 E-value=21 Score=23.23 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 031038 13 CVGLALGILIATLVFFGLR 31 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~ 31 (167)
+++++++++++.+.+++|+
T Consensus 5 l~~ilall~~ii~a~~~~~ 23 (113)
T COG5294 5 LIGILALLLIIIGALFIFY 23 (113)
T ss_pred HHHHHHHHHHHHhhheEEE
Confidence 4444444444444444444
No 356
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=38.97 E-value=30 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhee
Q 031038 13 CVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r 34 (167)
++.++-+++++++++-.|++.|
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~R 26 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTSR 26 (284)
T ss_pred hHHHHHHHHHHHHHHccccccc
Confidence 3333333344444444444333
No 357
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=38.78 E-value=24 Score=20.53 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=2.3
Q ss_pred eeehhh
Q 031038 8 VIIGIC 13 (167)
Q Consensus 8 ~ii~ii 13 (167)
+++.|+
T Consensus 3 IiiSIv 8 (66)
T PF07438_consen 3 IIISIV 8 (66)
T ss_pred hhHHHH
Confidence 333333
No 358
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=38.37 E-value=30 Score=20.45 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=5.0
Q ss_pred ehhhHHHHHHHH
Q 031038 10 IGICVGLALGIL 21 (167)
Q Consensus 10 i~ii~g~~~~v~ 21 (167)
+||+-|++++++
T Consensus 50 IGILYGlVIGli 61 (75)
T COG4064 50 IGILYGLVIGLI 61 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 359
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=38.15 E-value=34 Score=20.14 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=9.3
Q ss_pred eeehhhHHHHHHHHHH
Q 031038 8 VIIGICVGLALGILIA 23 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i 23 (167)
-+.|.++|.++.++++
T Consensus 41 ~~~G~aiG~~~AlvLv 56 (67)
T PRK13275 41 GIIGFAIGFLLALLLV 56 (67)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566666666555444
No 360
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=37.83 E-value=53 Score=17.78 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=3.6
Q ss_pred HHHHHHHHhh
Q 031038 21 LIATLVFFGL 30 (167)
Q Consensus 21 ~~i~~~~~~~ 30 (167)
+++.+..+-|
T Consensus 32 v~V~i~v~kw 41 (46)
T PF10389_consen 32 VIVGIAVYKW 41 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 361
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=37.81 E-value=1.4 Score=33.26 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=28.7
Q ss_pred hhccccccccEEEEEc-CCCcEEEEEEeccCC--cccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATM-PSGGVAAIKVLASDS--HQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l-~~g~~vavk~l~~~~--~~~~~~F~~e~~ 165 (167)
++||+|.|..||+-.- +.|+..|+|.++... ..+.++..+|++
T Consensus 17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEar 62 (355)
T KOG0033|consen 17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR 62 (355)
T ss_pred HHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHH
Confidence 3899999999997544 677888888775432 123345555554
No 362
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=37.78 E-value=22 Score=27.39 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhh
Q 031038 20 ILIATLVFFGLRW 32 (167)
Q Consensus 20 v~~i~~~~~~~~~ 32 (167)
|||+|.|.++||-
T Consensus 9 VLLVCALCVLWCg 21 (291)
T PTZ00459 9 VLLVCALCVLWCG 21 (291)
T ss_pred HHHHHHHHHHhcC
Confidence 3455555555664
No 363
>PRK03427 cell division protein ZipA; Provisional
Probab=37.30 E-value=42 Score=26.41 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=10.8
Q ss_pred eehhhHHHHHHHHHHHHHHH
Q 031038 9 IIGICVGLALGILIATLVFF 28 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~ 28 (167)
+|.|++|+++++.+++=.++
T Consensus 7 LiLivvGAIAIiAlL~HGlW 26 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFW 26 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 45667776665444444433
No 364
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=37.27 E-value=51 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=16.6
Q ss_pred cceeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 6 DLVIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
.|--+||+++..++.+++.++++-+.+
T Consensus 48 ~WRN~GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678888877766665555554443
No 365
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=36.73 E-value=32 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 031038 12 ICVGLALGILIATLVFF 28 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~ 28 (167)
+++|+++.+.+++++++
T Consensus 420 l~~gv~l~~~Ii~~i~~ 436 (472)
T PF07253_consen 420 LVFGVLLSIMIIIIIAL 436 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34454444444333333
No 366
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=36.64 E-value=69 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031038 15 GLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 15 g~~~~v~~i~~~~~~~~~~r 34 (167)
++-+++.++++++|++.|+|
T Consensus 7 ~~~~~i~~~~~~~F~~lR~~ 26 (157)
T PF13967_consen 7 AINLIIFLVLLLLFCILRKR 26 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444555566666666555
No 367
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.44 E-value=33 Score=20.31 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.4
Q ss_pred hhhHHHHH
Q 031038 11 GICVGLAL 18 (167)
Q Consensus 11 ~ii~g~~~ 18 (167)
|+++|+++
T Consensus 4 g~l~Ga~~ 11 (74)
T PF12732_consen 4 GFLAGAAA 11 (74)
T ss_pred HHHHHHHH
Confidence 44444444
No 368
>PF15234 LAT: Linker for activation of T-cells
Probab=36.41 E-value=44 Score=23.91 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHH-HHHHHhhhheec
Q 031038 11 GICVGLALGILIA-TLVFFGLRWYKK 35 (167)
Q Consensus 11 ~ii~g~~~~v~~i-~~~~~~~~~~r~ 35 (167)
-.++|.+++-++. +++.+|.|||.-
T Consensus 8 p~~LgLLlLplla~LlmALCvrCReL 33 (230)
T PF15234_consen 8 PSVLGLLLLPLLAVLLMALCVRCREL 33 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555544433 344555555543
No 369
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.30 E-value=39 Score=18.68 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=8.6
Q ss_pred ceeehhhHHHHHHHHHH
Q 031038 7 LVIIGICVGLALGILIA 23 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i 23 (167)
+-+++.++|.+++++++
T Consensus 9 ~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 9 GKIIGGLIGLILALLIL 25 (51)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34455555555544433
No 370
>PF14828 Amnionless: Amnionless
Probab=36.06 E-value=1.3e+02 Score=24.65 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=11.2
Q ss_pred eehhhHHHHHHHHHHHHHHH
Q 031038 9 IIGICVGLALGILIATLVFF 28 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~ 28 (167)
++++++++++++++++.+++
T Consensus 340 v~~~vl~~Lllv~ll~~~~l 359 (437)
T PF14828_consen 340 VVGIVLGCLLLVALLFGVIL 359 (437)
T ss_pred eeeehHHHHHHHHHHHHhhe
Confidence 56666666665544444443
No 371
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=35.87 E-value=32 Score=22.63 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=6.9
Q ss_pred ceeehhhHHHHHHH
Q 031038 7 LVIIGICVGLALGI 20 (167)
Q Consensus 7 ~~ii~ii~g~~~~v 20 (167)
.+++|+++|.+++.
T Consensus 6 ~~l~G~liGgiiGa 19 (115)
T COG4980 6 DFLFGILIGGIIGA 19 (115)
T ss_pred hHHHHHHHHHHHHH
Confidence 34455555555433
No 372
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=35.68 E-value=18 Score=23.37 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.4
Q ss_pred ccccEE
Q 031038 129 AFGPVY 134 (167)
Q Consensus 129 ~~g~vy 134 (167)
-+|+|-
T Consensus 65 i~G~Vv 70 (106)
T PRK05585 65 IIGKVT 70 (106)
T ss_pred eEEEEE
Confidence 334443
No 373
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=35.65 E-value=57 Score=19.29 Aligned_cols=13 Identities=46% Similarity=1.037 Sum_probs=6.6
Q ss_pred ehhhHHHHHHHHH
Q 031038 10 IGICVGLALGILI 22 (167)
Q Consensus 10 i~ii~g~~~~v~~ 22 (167)
+||+-|+++++++
T Consensus 47 iGIlYG~viGlli 59 (70)
T TIGR01149 47 IGILYGLVIGLIL 59 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 374
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=35.59 E-value=23 Score=17.85 Aligned_cols=17 Identities=24% Similarity=0.696 Sum_probs=8.8
Q ss_pred ehhhHHHHHHHHHHHHH
Q 031038 10 IGICVGLALGILIATLV 26 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~ 26 (167)
+++.+|..++|++.+++
T Consensus 7 l~~~~G~~~GVvlMCll 23 (34)
T PF12664_consen 7 LGFSLGGMIGVVLMCLL 23 (34)
T ss_pred HHHHccchHhHHHHHHH
Confidence 44455555555554443
No 375
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=35.57 E-value=44 Score=24.17 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=9.6
Q ss_pred eehhhHHHHH-HHHHHHHHHHhhhhe
Q 031038 9 IIGICVGLAL-GILIATLVFFGLRWY 33 (167)
Q Consensus 9 ii~ii~g~~~-~v~~i~~~~~~~~~~ 33 (167)
+|-|.+++++ ++.++..+++-+||-
T Consensus 101 ~iTITvSlImViaAliTtlvlK~C~~ 126 (205)
T PF15298_consen 101 IITITVSLIMVIAALITTLVLKNCCA 126 (205)
T ss_pred EEEEeeehhHHHHHhhhhhhhhhhhh
Confidence 4444444332 233333344444443
No 376
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=35.32 E-value=48 Score=26.72 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=5.9
Q ss_pred CCCcEEEEEE
Q 031038 139 PSGGVAAIKV 148 (167)
Q Consensus 139 ~~g~~vavk~ 148 (167)
++|..+.|..
T Consensus 336 pDG~V~sV~~ 345 (387)
T PRK09510 336 PDGTLLDIKK 345 (387)
T ss_pred CCCcEEeeee
Confidence 6666665543
No 377
>PRK04335 cell division protein ZipA; Provisional
Probab=35.20 E-value=32 Score=26.83 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=8.4
Q ss_pred eehhhHHHHHHHHH
Q 031038 9 IIGICVGLALGILI 22 (167)
Q Consensus 9 ii~ii~g~~~~v~~ 22 (167)
++.||+|+++++.+
T Consensus 6 lvLiivGAlAI~AL 19 (313)
T PRK04335 6 FVLIVVGALAIAAL 19 (313)
T ss_pred ehHHHHHHHHHHHH
Confidence 56677776664443
No 378
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=34.97 E-value=1.2e+02 Score=26.25 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhee
Q 031038 13 CVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r 34 (167)
+.-++++++++++++++|+|||
T Consensus 396 ~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 396 IFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555444
No 379
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=34.26 E-value=18 Score=22.30 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhheecccC
Q 031038 21 LIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 21 ~~i~~~~~~~~~~r~~~~ 38 (167)
+++-+.+|.+-+|.|||-
T Consensus 25 ilvS~~l~~YarrNKrkI 42 (99)
T PF15117_consen 25 ILVSFGLFMYARRNKRKI 42 (99)
T ss_pred hHHhhHHHHhhhhcCceE
Confidence 334444555555555554
No 380
>PHA02650 hypothetical protein; Provisional
Probab=34.12 E-value=91 Score=18.96 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 031038 24 TLVFFGL 30 (167)
Q Consensus 24 ~~~~~~~ 30 (167)
+++++++
T Consensus 64 l~~flYL 70 (81)
T PHA02650 64 LFSFFVF 70 (81)
T ss_pred HHHHHHH
Confidence 3333333
No 381
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=34.08 E-value=13 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=0.0
Q ss_pred cceeehhhHHHHHHHHHHHHHHH
Q 031038 6 DLVIIGICVGLALGILIATLVFF 28 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~ 28 (167)
+|-.+++++|++.+++++.++++
T Consensus 3 pW~liav~LGILCllLLvtv~vL 25 (119)
T PF08391_consen 3 PWRLIAVALGILCLLLLVTVAVL 25 (119)
T ss_dssp -----------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777765555544443
No 382
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=33.60 E-value=24 Score=27.49 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=3.1
Q ss_pred EEEEEc
Q 031038 133 VYKATM 138 (167)
Q Consensus 133 vy~g~l 138 (167)
+|.|..
T Consensus 202 ~Y~G~C 207 (315)
T PRK10525 202 TYDGIS 207 (315)
T ss_pred EEEEEC
Confidence 455544
No 383
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=33.46 E-value=60 Score=20.62 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 031038 14 VGLALGILIA 23 (167)
Q Consensus 14 ~g~~~~v~~i 23 (167)
.|++..++++
T Consensus 67 ~Gi~~AI~fF 76 (98)
T PF10164_consen 67 CGILCAIFFF 76 (98)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 384
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=33.39 E-value=47 Score=26.96 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=12.9
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhhee
Q 031038 9 IIGICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
.+|.++|.++.+++.++++|++.+.+
T Consensus 67 aagFfvaflvslVL~~l~~f~l~r~~ 92 (429)
T PF12297_consen 67 AAGFFVAFLVSLVLTWLCFFLLARTR 92 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555444444444433
No 385
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.92 E-value=79 Score=22.52 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=5.8
Q ss_pred ehhhHHHHHHHHHH
Q 031038 10 IGICVGLALGILIA 23 (167)
Q Consensus 10 i~ii~g~~~~v~~i 23 (167)
+.|+++++++++++
T Consensus 20 ~~iIi~~~llll~~ 33 (182)
T PRK08455 20 LIIIIGVVVLLLLI 33 (182)
T ss_pred EEehHHHHHHHHHH
Confidence 33344444434433
No 386
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=32.54 E-value=40 Score=22.12 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=12.5
Q ss_pred cceeehhhHHHHHHHHHHHHH
Q 031038 6 DLVIIGICVGLALGILIATLV 26 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~ 26 (167)
+..|+.+|+|.+++--+.+++
T Consensus 9 ~a~Ia~mVlGFi~fWPlGla~ 29 (115)
T PF11014_consen 9 PAWIAAMVLGFIVFWPLGLAL 29 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456777788877654333333
No 387
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=32.53 E-value=65 Score=19.39 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031038 11 GICVGLALGILIATLVF 27 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~ 27 (167)
+-++|+++++++..+++
T Consensus 61 g~IVgvl~~laVaGlI~ 77 (83)
T PF05356_consen 61 GYIVGVLVILAVAGLIY 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555444444433
No 388
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=32.21 E-value=74 Score=15.92 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=4.6
Q ss_pred HHHHHhhhhee
Q 031038 24 TLVFFGLRWYK 34 (167)
Q Consensus 24 ~~~~~~~~~~r 34 (167)
+.+++-|.+.|
T Consensus 24 ~s~iv~w~~~R 34 (35)
T PF13940_consen 24 ASLIVGWLRNR 34 (35)
T ss_pred HHHHHHHHHhc
Confidence 33444444433
No 389
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=30.76 E-value=87 Score=16.33 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=5.4
Q ss_pred ceeehhhHHHH
Q 031038 7 LVIIGICVGLA 17 (167)
Q Consensus 7 ~~ii~ii~g~~ 17 (167)
.++++.+.|+.
T Consensus 10 LWlVgtv~G~~ 20 (40)
T PF01788_consen 10 LWLVGTVAGIA 20 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 34455555533
No 390
>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]
Probab=30.57 E-value=36 Score=28.13 Aligned_cols=42 Identities=33% Similarity=0.549 Sum_probs=28.7
Q ss_pred HHHHhhhhh-hhccccccccEEEEEcC-------C---------CcEEEEEEeccCCcc
Q 031038 114 IQKATQNFT-NILGQGAFGPVYKATMP-------S---------GGVAAIKVLASDSHQ 155 (167)
Q Consensus 114 l~~~~~~f~-~~lg~g~~g~vy~g~l~-------~---------g~~vavk~l~~~~~~ 155 (167)
++.+-.+|. .-||.|+.+.||+|++. + .+.+|+|.+...-..
T Consensus 185 ~~eiF~efn~~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~ 243 (565)
T KOG1236|consen 185 IEEIFSEFNREPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEK 243 (565)
T ss_pred HHHHHHhcCCcccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHH
Confidence 333334454 57899999999999861 1 236899999765433
No 391
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.49 E-value=44 Score=28.04 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 031038 12 ICVGLALGI 20 (167)
Q Consensus 12 ii~g~~~~v 20 (167)
+++|+++++
T Consensus 4 liv~llVil 12 (570)
T COG4477 4 LIVALLVIL 12 (570)
T ss_pred hHHHHHHHH
Confidence 344444433
No 392
>PRK11901 hypothetical protein; Reviewed
Probab=30.16 E-value=44 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.5
Q ss_pred cEEEEEcCCCcEEEEEE
Q 031038 132 PVYKATMPSGGVAAIKV 148 (167)
Q Consensus 132 ~vy~g~l~~g~~vavk~ 148 (167)
.||+-.. +|...-|-.
T Consensus 272 ~VYqT~R-nGkpWYVVv 287 (327)
T PRK11901 272 HVYETKR-DGKPWYVLV 287 (327)
T ss_pred EEEEEEE-CCceEEEEE
Confidence 3565444 555443333
No 393
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=30.15 E-value=71 Score=17.26 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q 031038 15 GLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 15 g~~~~v~~i~~~~~~~~~~r 34 (167)
|.++.+++.+++.++|..++
T Consensus 14 ~~lIC~Fl~~~~~F~~F~~K 33 (54)
T PF06716_consen 14 GFLICLFLFCLVVFIWFVYK 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33343444444455554444
No 394
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=30.11 E-value=31 Score=26.19 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=9.4
Q ss_pred ehhhHHHHHHHHHHHHHH
Q 031038 10 IGICVGLALGILIATLVF 27 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~ 27 (167)
++.++|++++++++.+.+
T Consensus 73 v~~~~G~~~v~liLgl~i 90 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAI 90 (279)
T ss_pred ccchhhHHHHHHHHHHhh
Confidence 555666555555444433
No 395
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=29.98 E-value=24 Score=21.91 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=6.7
Q ss_pred eehhhHHHHHHHHHH
Q 031038 9 IIGICVGLALGILIA 23 (167)
Q Consensus 9 ii~ii~g~~~~v~~i 23 (167)
++|.++|.+..++++
T Consensus 21 lvG~~~g~~~~~l~~ 35 (90)
T PF11808_consen 21 LVGWLFGHLWWALLL 35 (90)
T ss_pred HHHHHHhHHHHHHHH
Confidence 445555544433333
No 396
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.86 E-value=43 Score=19.71 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=7.8
Q ss_pred eeehhhHHHHHHHH
Q 031038 8 VIIGICVGLALGIL 21 (167)
Q Consensus 8 ~ii~ii~g~~~~v~ 21 (167)
+++++++|+++.++
T Consensus 52 W~~r~iiGaiI~~i 65 (71)
T PF10779_consen 52 WIWRTIIGAIITAI 65 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666655443
No 397
>COG5547 Small integral membrane protein [Function unknown]
Probab=29.78 E-value=71 Score=18.18 Aligned_cols=10 Identities=60% Similarity=0.806 Sum_probs=4.0
Q ss_pred eehhhHHHHH
Q 031038 9 IIGICVGLAL 18 (167)
Q Consensus 9 ii~ii~g~~~ 18 (167)
|+|-++|+++
T Consensus 11 IIgglvglli 20 (62)
T COG5547 11 IIGGLVGLLI 20 (62)
T ss_pred hHHHHHHHHH
Confidence 3343444433
No 398
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=29.32 E-value=57 Score=25.16 Aligned_cols=7 Identities=14% Similarity=0.296 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 031038 24 TLVFFGL 30 (167)
Q Consensus 24 ~~~~~~~ 30 (167)
+++++++
T Consensus 296 ~~~f~LY 302 (354)
T PF05795_consen 296 LIFFLLY 302 (354)
T ss_pred HHHHHHh
Confidence 3333333
No 399
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=29.14 E-value=71 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.8
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEecc
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVLAS 151 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l~~ 151 (167)
..|+.|.-+.||+|.-.++..+|||+...
T Consensus 54 g~istGKEA~Vy~a~~~~~~~~avKiyr~ 82 (268)
T COG1718 54 GCISTGKEANVYLAETGDGRYVAVKIYRT 82 (268)
T ss_pred eeecCCcceEEEeeccCCCceEEEEEEeh
Confidence 46778888999999988889999999854
No 400
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=29.10 E-value=51 Score=24.43 Aligned_cols=13 Identities=0% Similarity=0.404 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHH
Q 031038 11 GICVGLALGILIA 23 (167)
Q Consensus 11 ~ii~g~~~~v~~i 23 (167)
.|++.++++++++
T Consensus 188 ~vilpvvIaliVi 200 (259)
T PF07010_consen 188 SVILPVVIALIVI 200 (259)
T ss_pred chhHHHHHHHHHH
Confidence 3444444444443
No 401
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=85 Score=21.39 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhheecccC
Q 031038 21 LIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 21 ~~i~~~~~~~~~~r~~~~ 38 (167)
..++++-.|++.-++|+.
T Consensus 18 ag~af~gYciYFd~KRrs 35 (143)
T KOG4056|consen 18 AGLAFIGYCIYFDKKRRS 35 (143)
T ss_pred HHHHHHHHHhhccccccc
Confidence 333344444444444443
No 402
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.66 E-value=49 Score=30.72 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=32.8
Q ss_pred hhccccccccEEEEEcCCCcEEEEEEe-ccCCcccHHHHHHHHh
Q 031038 123 NILGQGAFGPVYKATMPSGGVAAIKVL-ASDSHQGEKEFQTEVR 165 (167)
Q Consensus 123 ~~lg~g~~g~vy~g~l~~g~~vavk~l-~~~~~~~~~~F~~e~~ 165 (167)
..+|++.|=.|.++.-++|. |.||.+ +.......++|.++++
T Consensus 29 ~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~ 71 (1431)
T KOG1240|consen 29 ENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLE 71 (1431)
T ss_pred cccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHH
Confidence 58899999999999998886 889988 4443445677777664
No 403
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=28.49 E-value=56 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhee
Q 031038 11 GICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
+.+++..++.+++-++..|+||+.
T Consensus 51 aa~l~l~Ll~ll~yli~~cC~Rr~ 74 (526)
T KOG4433|consen 51 AACLGLSLLFLLFYLICRCCCRRE 74 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444443444444444444443
No 404
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=28.12 E-value=1e+02 Score=16.23 Aligned_cols=22 Identities=32% Similarity=0.541 Sum_probs=8.3
Q ss_pred ehhhHHHHHHHHHHHHHHHhhh
Q 031038 10 IGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~ 31 (167)
.+.+.+.=+.+++..++++..+
T Consensus 10 lgl~~~lQL~LL~FlL~fFLV~ 31 (44)
T PF08135_consen 10 LGLTFALQLLLLVFLLFFFLVY 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333333
No 405
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=28.07 E-value=95 Score=18.96 Aligned_cols=6 Identities=17% Similarity=0.805 Sum_probs=2.4
Q ss_pred hHHHHH
Q 031038 13 CVGLAL 18 (167)
Q Consensus 13 i~g~~~ 18 (167)
++|..+
T Consensus 12 v~GM~~ 17 (82)
T TIGR01195 12 VLGMGI 17 (82)
T ss_pred HHHHHH
Confidence 344333
No 406
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.99 E-value=65 Score=18.83 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=9.3
Q ss_pred eeehhhHHHHHHHHHHH
Q 031038 8 VIIGICVGLALGILIAT 24 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~ 24 (167)
.+.|.+.|.++.+++++
T Consensus 41 ~~~G~~iG~~~Al~lV~ 57 (65)
T TIGR02507 41 TITGLAYGFLFAVLLVA 57 (65)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34566666665554443
No 407
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=27.78 E-value=99 Score=18.43 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhhee
Q 031038 21 LIATLVFFGLRWYK 34 (167)
Q Consensus 21 ~~i~~~~~~~~~~r 34 (167)
++++.+...|+..+
T Consensus 21 ~~~~~~wi~~Ra~~ 34 (72)
T PF13268_consen 21 LLVSGIWILWRALR 34 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 408
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=27.51 E-value=88 Score=17.19 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.0
Q ss_pred HHHHHHHhhh
Q 031038 22 IATLVFFGLR 31 (167)
Q Consensus 22 ~i~~~~~~~~ 31 (167)
.++++++++.
T Consensus 35 ~i~li~~~~k 44 (49)
T PF14960_consen 35 SIGLIILYFK 44 (49)
T ss_pred HHHHHHHHHh
Confidence 3334444443
No 409
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=27.48 E-value=1e+02 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhhe
Q 031038 15 GLALGILIATLVFFGLRWY 33 (167)
Q Consensus 15 g~~~~v~~i~~~~~~~~~~ 33 (167)
++.++++++++.++.|-+.
T Consensus 9 ~Is~~ill~viglv~y~~l 27 (122)
T TIGR02588 9 GISTLILAAMFGLVAYDWL 27 (122)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334344444444444443
No 410
>PF00943 Alpha_E2_glycop: Alphavirus E2 glycoprotein; InterPro: IPR000936 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 (IPR002548 from INTERPRO) that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3 glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike [, ]. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together []. This entry represents the alphaviral E2 glycoprotein. The E2 glycoprotein functions to interact with the nucleocapsid through its cytoplasmic domain, while its ectodomain is responsible for binding a cellular receptor.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2XFC_B 3N42_B 3N41_B 2XFB_E 3N40_P 3N43_B 3N44_B 3MUU_B 1Z8Y_P 3J0C_H ....
Probab=27.32 E-value=56 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.054 Sum_probs=9.7
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhhe
Q 031038 10 IGICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
+.+++++.+++++.+.+..++|++
T Consensus 354 i~~~~~~~~~~~i~~~~s~~~~~~ 377 (403)
T PF00943_consen 354 IVVLSGAAAIILISLAASAWLCCK 377 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444344333333333333
No 411
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=27.19 E-value=49 Score=21.64 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=4.0
Q ss_pred HHHHHhhhhe
Q 031038 24 TLVFFGLRWY 33 (167)
Q Consensus 24 ~~~~~~~~~~ 33 (167)
+++||.++.|
T Consensus 73 lviffviy~r 82 (150)
T PF06084_consen 73 LVIFFVIYSR 82 (150)
T ss_pred HHHhheeEec
Confidence 3334444433
No 412
>PHA03105 EEV glycoprotein; Provisional
Probab=27.00 E-value=33 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=6.3
Q ss_pred hhccccccccEEE
Q 031038 123 NILGQGAFGPVYK 135 (167)
Q Consensus 123 ~~lg~g~~g~vy~ 135 (167)
++.+...-.-||.
T Consensus 123 nLnWD~~~~~vyd 135 (188)
T PHA03105 123 NLNWDDNNNGVYD 135 (188)
T ss_pred cccccCCCCceee
Confidence 4455544444553
No 413
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=26.83 E-value=23 Score=30.14 Aligned_cols=45 Identities=31% Similarity=0.375 Sum_probs=27.8
Q ss_pred hhhccccccccEEEEEcC-CCcEEEEEEe--ccC--CcccHHHHHHHHhh
Q 031038 122 TNILGQGAFGPVYKATMP-SGGVAAIKVL--ASD--SHQGEKEFQTEVRA 166 (167)
Q Consensus 122 ~~~lg~g~~g~vy~g~l~-~g~~vavk~l--~~~--~~~~~~~F~~e~~~ 166 (167)
..+||+|.|-+||||.=. .|..||=--+ +.. +....+.|..|+.+
T Consensus 45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~l 94 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHL 94 (632)
T ss_pred hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHH
Confidence 348999999999999763 4555542222 221 12233678888753
No 414
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=26.77 E-value=94 Score=19.06 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.2
Q ss_pred eehhhH
Q 031038 9 IIGICV 14 (167)
Q Consensus 9 ii~ii~ 14 (167)
++..++
T Consensus 57 iiS~i~ 62 (84)
T PF09716_consen 57 IISTIA 62 (84)
T ss_pred hHHHHH
Confidence 333333
No 415
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.78 E-value=1e+02 Score=21.35 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=12.0
Q ss_pred cccEEEEEcCCCcEEEEEEeccC
Q 031038 130 FGPVYKATMPSGGVAAIKVLASD 152 (167)
Q Consensus 130 ~g~vy~g~l~~g~~vavk~l~~~ 152 (167)
.-.|-.|+..+....-|+-++.+
T Consensus 117 ~~~V~Lg~e~~~PiWEV~y~dke 139 (161)
T COG5353 117 IKSVTLGREKEKPIWEVTYLDKE 139 (161)
T ss_pred eeEEEEEeeCCceeEEEeecCcc
Confidence 33455555545444566666543
No 416
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.78 E-value=1.3e+02 Score=16.93 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 031038 11 GICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~ 31 (167)
|+++|.+..+..++..++.+.
T Consensus 7 G~l~G~~~t~aa~a~av~~~k 27 (54)
T PF11240_consen 7 GFLTGVAATLAAIAGAVFTFK 27 (54)
T ss_pred hHHHhHHHHHHHHHHHHHHHH
Confidence 455565655555555555544
No 417
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=25.69 E-value=71 Score=28.63 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.2
Q ss_pred hhhHHH
Q 031038 11 GICVGL 16 (167)
Q Consensus 11 ~ii~g~ 16 (167)
++++++
T Consensus 633 ~~~~~~ 638 (968)
T PLN00113 633 TCTLGA 638 (968)
T ss_pred hHHHHH
Confidence 333333
No 418
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=25.58 E-value=86 Score=23.08 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 031038 16 LALGILIATLVFFGLR 31 (167)
Q Consensus 16 ~~~~v~~i~~~~~~~~ 31 (167)
+++-.+++++++++++
T Consensus 41 fLlWyfviilvLm~~~ 56 (243)
T PF15468_consen 41 FLLWYFVIILVLMFFS 56 (243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 419
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=25.51 E-value=1.7e+02 Score=21.23 Aligned_cols=14 Identities=7% Similarity=0.389 Sum_probs=6.1
Q ss_pred eeehhhHHHHHHHH
Q 031038 8 VIIGICVGLALGIL 21 (167)
Q Consensus 8 ~ii~ii~g~~~~v~ 21 (167)
+.+.+++++.++++
T Consensus 64 WvLY~VI~VSaaVI 77 (207)
T PF10812_consen 64 WVLYAVIGVSAAVI 77 (207)
T ss_pred EeehHHHHHHHHHH
Confidence 34444445444333
No 420
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=25.45 E-value=1.1e+02 Score=15.98 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=9.2
Q ss_pred ehhhHHHHHHHHHHHHHHHhh
Q 031038 10 IGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~ 30 (167)
..++.|.++.++.+...+++.
T Consensus 10 ~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 10 LSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhheEEE
Confidence 445556544444444444443
No 421
>PF15013 CCSMST1: CCSMST1 family
Probab=25.11 E-value=72 Score=19.35 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.4
Q ss_pred hhhhee
Q 031038 29 GLRWYK 34 (167)
Q Consensus 29 ~~~~~r 34 (167)
++|..|
T Consensus 46 yFC~lR 51 (77)
T PF15013_consen 46 YFCFLR 51 (77)
T ss_pred HHhhcc
Confidence 334444
No 422
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.64 E-value=1e+02 Score=15.42 Aligned_cols=33 Identities=15% Similarity=-0.092 Sum_probs=0.0
Q ss_pred CCcCCcceeehhhHHHHHHHHHHHHHHHhhhhe
Q 031038 1 MVHKSDLVIIGICVGLALGILIATLVFFGLRWY 33 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~ 33 (167)
|...+.++...|.+-.+.++++=...+..+..|
T Consensus 1 meekp~Gal~vv~iLt~~ILvFWfgvf~~fl~R 33 (34)
T PF08113_consen 1 MEEKPKGALGVVMILTAFILVFWFGVFALFLAR 33 (34)
T ss_dssp ---STHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcceeeeHHHHHHHHHHHHHHHHHhheec
No 423
>PHA02975 hypothetical protein; Provisional
Probab=24.63 E-value=97 Score=18.30 Aligned_cols=27 Identities=37% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhh
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~ 31 (167)
.+..+.+.+++ ++++++++++.+++..
T Consensus 40 ~~~~~~~~ii~-i~~v~~~~~~~flYLK 66 (69)
T PHA02975 40 KSSLSIILIIF-IIFITCIAVFTFLYLK 66 (69)
T ss_pred CCchHHHHHHH-HHHHHHHHHHHHHHHH
No 424
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.63 E-value=69 Score=18.68 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhheecc
Q 031038 13 CVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
++.++++++-+++.+|+.+++-++
T Consensus 1 l~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 1 LLIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
No 425
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.62 E-value=1.4e+02 Score=18.76 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheecccCcccCCCCCCCC
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKKHDHFRRCSNERSVA 49 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~~~~~~~~ 49 (167)
..+++++++++++++..-+-.+...............+..
T Consensus 5 ~~llL~l~LA~lLlisSevaa~~~~~~~~~~~~~~v~~~~ 44 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVAARELEETEKEEEENEVQDDK 44 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhccccccCCCCCccc
No 426
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=24.51 E-value=93 Score=25.19 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=0.0
Q ss_pred ccccccccEEEEEcCCC-cEEEEEE
Q 031038 125 LGQGAFGPVYKATMPSG-GVAAIKV 148 (167)
Q Consensus 125 lg~g~~g~vy~g~l~~g-~~vavk~ 148 (167)
+|.|.++.||+....+| ..+.||.
T Consensus 34 lggGn~N~VyrV~~~~g~~svIVKq 58 (401)
T PRK09550 34 IGDGNLNLVFRVSDTEGGKSVIVKQ 58 (401)
T ss_pred cCCCceEEEEEEEeCCCCeEEEEEe
No 427
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=24.48 E-value=79 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
+.+++|+++++.+-+++++.+.-|+.
T Consensus 7 vl~l~g~llligftivvl~vyfgrk~ 32 (126)
T PF13120_consen 7 VLLLIGTLLLIGFTIVVLLVYFGRKF 32 (126)
T ss_pred HHHHHHHHHHHHHHHHhhhheeccee
No 428
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.47 E-value=95 Score=16.50 Aligned_cols=25 Identities=4% Similarity=0.018 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhheecc
Q 031038 12 ICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
|-.+-.+.+++++.+++...+++++
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~~~r~ 31 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLRRRRR 31 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=24.46 E-value=67 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 11 GICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
++++|++++++.-.+....+.++|+++
T Consensus 113 g~l~Gli~~~~~Y~ls~~lI~~Yr~~~ 139 (154)
T TIGR03546 113 SFVVGLILLPPAFAISKVIIAKYRKRI 139 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 430
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.37 E-value=83 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 12 ICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
+.+.+++++++.+++++++.|+|+++
T Consensus 27 ~~i~~iI~lvv~~lli~~~~kyr~r~ 52 (217)
T TIGR01432 27 IVFMLVIVFVVFVLFTIFLVKYRYRK 52 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
No 431
>PRK10905 cell division protein DamX; Validated
Probab=24.25 E-value=59 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 031038 12 ICVGLALGILIATLV 26 (167)
Q Consensus 12 ii~g~~~~v~~i~~~ 26 (167)
|.+|+++++|+|+.|
T Consensus 2 iGiGilVLlLLIigI 16 (328)
T PRK10905 2 MGVGILVLLLLIIGI 16 (328)
T ss_pred cchhHHHHHHHHHHH
No 432
>COG2034 Predicted membrane protein [Function unknown]
Probab=24.24 E-value=1.2e+02 Score=18.70 Aligned_cols=24 Identities=8% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhee
Q 031038 11 GICVGLALGILIATLVFFGLRWYK 34 (167)
Q Consensus 11 ~ii~g~~~~v~~i~~~~~~~~~~r 34 (167)
.++.+++++++++++.++.++..|
T Consensus 62 ~~~~~~vlalilmil~~~l~~~~r 85 (85)
T COG2034 62 MAIISVVLALILMILWLLLFLLGR 85 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcC
No 433
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.09 E-value=65 Score=23.23 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
+.|+++++++++.+++++++.++..+++
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=24.04 E-value=1e+02 Score=22.65 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred hcc-ccccccEEEEEcCCCcEEEEEEec
Q 031038 124 ILG-QGAFGPVYKATMPSGGVAAIKVLA 150 (167)
Q Consensus 124 ~lg-~g~~g~vy~g~l~~g~~vavk~l~ 150 (167)
++| .|+.|++|.... ++..++||..+
T Consensus 38 ~lg~~~g~gtv~~v~~-~~~~~vlk~~~ 64 (239)
T PRK01723 38 VVGSAKGRGTTWFVQT-PGVNWVLRHYR 64 (239)
T ss_pred eeecCCCCccEEEEEe-CCceEEEEEee
No 435
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.97 E-value=1e+02 Score=20.43 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhheecccCcccCCC
Q 031038 13 CVGLALGILIATLVFFGLRWYKKHDHFRRCSN 44 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r~~~~~~~~~~ 44 (167)
..+++.+++.+++.+++.+++.++...+...+
T Consensus 97 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 128 (135)
T PF04246_consen 97 LWAILGGLLGLALGFLILRLFDRRLKKKSKFQ 128 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc
No 436
>PHA02849 putative transmembrane protein; Provisional
Probab=23.81 E-value=1.3e+02 Score=18.25 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCcceeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 4 KSDLVIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 4 ~s~~~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
++.+.+..|.+-++++++++.+++.+..|
T Consensus 12 f~~g~v~vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 12 FDAGAVTVILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=23.80 E-value=40 Score=17.08 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCcCCcceeehhhHHHHHHHHHHH
Q 031038 1 MVHKSDLVIIGICVGLALGILIAT 24 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~ 24 (167)
|..-.....+++.+|+++.+++++
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 1 MISDVQLYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
No 438
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=23.69 E-value=26 Score=26.41 Aligned_cols=35 Identities=9% Similarity=-0.314 Sum_probs=0.0
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHhhhheecccCc
Q 031038 5 SDLVIIGICVGLALGILIATLVFFGLRWYKKHDHF 39 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~ 39 (167)
+.-++..++.+.+.+|+.+++.++||.++++.+.+
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~WKkkq~~~~~ 246 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALYWKKKQRSLTQ 246 (273)
T ss_dssp -----------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
No 439
>KOG3884 consensus Neural proliferation, differentiation and control protein [Signal transduction mechanisms]
Probab=23.57 E-value=63 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=0.0
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHhhhheecc
Q 031038 5 SDLVIIGICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
+....|...+|.+..++++..+.++.++++.|
T Consensus 294 ~~svlIla~v~~v~aa~~Vg~la~g~~~~~nR 325 (437)
T KOG3884|consen 294 SSSVLILAAVGTVMAAGLVGTLAGGTYYYKNR 325 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeeccc
No 440
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=23.54 E-value=1.4e+02 Score=17.43 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecccC
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
++-+|+++|..++.-++..+.+-+..--.+.+
T Consensus 30 WIgvgaL~G~~vlFNil~~laL~yL~p~~k~~ 61 (65)
T PF08370_consen 30 WIGVGALLGFIVLFNILFTLALTYLNPLGKSQ 61 (65)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhcCCcCCCC
No 441
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=23.39 E-value=87 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheec
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
+.|++++++..++++..+++++++|+
T Consensus 4 ~~iilail~~~li~~~~~~~~r~~r~ 29 (705)
T PF07095_consen 4 IVIILAILLACLIIAGSFLWFRMRRR 29 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
No 442
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=23.24 E-value=83 Score=26.23 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheecccCcc
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHDHFR 40 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~ 40 (167)
.++.+++...++.+++++++.++.-+|.+|..+
T Consensus 153 ~~~~al~~~~~v~~l~~lvi~~~~~~r~~k~~~ 185 (534)
T KOG3653|consen 153 VLIYALIPLLLVSLLAALVILAFLGYRQRKNAR 185 (534)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 443
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=22.91 E-value=59 Score=17.55 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhheeccc
Q 031038 18 LGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 18 ~~v~~i~~~~~~~~~~r~~~ 37 (167)
++.+++.+.+..++|+++++
T Consensus 27 aLa~fi~lt~yal~r~~~~~ 46 (46)
T PF11431_consen 27 ALAVFIGLTIYALWRRRRKQ 46 (46)
T ss_dssp THHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhccC
No 444
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=22.87 E-value=76 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecccCc
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKHDHF 39 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~ 39 (167)
.+++.++.|..++-|+++++..++.-++++...
T Consensus 52 ~IliYcVTg~sllsli~VtvaalYsSC~~~pg~ 84 (235)
T PF11359_consen 52 AILIYCVTGFSLLSLIVVTVAALYSSCCRRPGR 84 (235)
T ss_pred hhheeeehhHHHHHHHHHHHHHHHHHHHhCCCc
No 445
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=22.76 E-value=99 Score=18.53 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred CcceeehhhHHHHHHHHHHHHHHHh
Q 031038 5 SDLVIIGICVGLALGILIATLVFFG 29 (167)
Q Consensus 5 s~~~ii~ii~g~~~~v~~i~~~~~~ 29 (167)
++...+.+++|+++++++-++++++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
No 446
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=22.70 E-value=1.4e+02 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 031038 12 ICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~ 31 (167)
.++|..++++++++++++..
T Consensus 15 m~~GM~~VF~fL~lLi~~~~ 34 (85)
T PRK03814 15 MLTGMGVVFIFLTLLVYLVQ 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 447
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=22.38 E-value=2.2e+02 Score=24.02 Aligned_cols=90 Identities=18% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhheecccCcccCCCCCCCCCCCcccCCCCcccccCCCcccccccccCCCCCCCCCccccccCCCC
Q 031038 16 LALGILIATLVFFGLRWYKKHDHFRRCSNERSVATHPIRINGLGTSIDFSAPVANSVAVKASGFPQKKSQVSWWSNHSKD 95 (167)
Q Consensus 16 ~~~~v~~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (167)
++++.+-++++++..++.||||+++...........+........+......+.........+..+....-...+.++..
T Consensus 18 l~atA~g~v~l~~lA~~lkRRr~kkk~~~~~~~~~r~~s~k~~~~s~rr~~s~~~~~ndt~s~~~s~~~sk~ssss~Sla 97 (514)
T PF10265_consen 18 LFATAVGVVSLIFLAHYLKRRRRKKKWGPGHLGTPRPSSRKGRSYSSRRVNSPSSSPNDTLSGISSSASSKHSSSSHSLA 97 (514)
T ss_pred eehhHHHHHHHHHHHHHHHHhhccccccccccccCCChhhcccccccccccCcccCCCcccCCCCccccCCCCCcccccc
Q ss_pred CCCCCCCCCC
Q 031038 96 RFTSAPSASG 105 (167)
Q Consensus 96 ~~~~~~~~~~ 105 (167)
......+..+
T Consensus 98 Svs~~nS~~s 107 (514)
T PF10265_consen 98 SVSSRNSSSS 107 (514)
T ss_pred ceeeccCccc
No 448
>PRK04570 cell division protein ZipA; Provisional
Probab=21.99 E-value=1.7e+02 Score=21.94 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhheecccCcccCCCCCCCCCC
Q 031038 14 VGLALGILIATLVFFGLRWYKKHDHFRRCSNERSVATH 51 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 51 (167)
+|+++.-++++..+|++-+-++.....+.........+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 46 (243)
T PRK04570 9 IGILIAGLLLVAAIFLFGRPKKSPQGRRVDKEEPQPRE 46 (243)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcc
No 449
>PHA03030 hypothetical protein; Provisional
Probab=21.89 E-value=1.1e+02 Score=19.68 Aligned_cols=23 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhheec
Q 031038 13 CVGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
+.-++.+++++++++++++--+|
T Consensus 4 i~~ili~lfifl~iffYI~~IkR 26 (122)
T PHA03030 4 IFLILIFLFIFLFIFFYIRIIKR 26 (122)
T ss_pred ehHHHHHHHHHHHHHHHheeeec
No 450
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=21.80 E-value=1.1e+02 Score=14.42 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhheec
Q 031038 15 GLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 15 g~~~~v~~i~~~~~~~~~~r~ 35 (167)
|....+.++++++....+|||
T Consensus 7 g~~~~~~l~~l~l~~l~rRRR 27 (27)
T TIGR03382 7 GAGGLLALALLALAALLRRRR 27 (27)
T ss_pred chHHHHHHHHHHHHHHHhccC
No 451
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=21.77 E-value=95 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=0.0
Q ss_pred ccc-ccccEEEEEcCCCcEEEE
Q 031038 126 GQG-AFGPVYKATMPSGGVAAI 146 (167)
Q Consensus 126 g~g-~~g~vy~g~l~~g~~vav 146 (167)
|+| ..|.+|+ +++|..+-|
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceEEEe
No 452
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=21.62 E-value=1.1e+02 Score=17.08 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhheec
Q 031038 14 VGLALGILIATLVFFGLRWYKK 35 (167)
Q Consensus 14 ~g~~~~v~~i~~~~~~~~~~r~ 35 (167)
+.+++++++++.+++.+...++
T Consensus 1 L~~~~~~~~~~~~~~~~~~~~~ 22 (70)
T PF00672_consen 1 LLVLFLIILLLSLLLAWLLARR 22 (70)
T ss_dssp -HHHHHHHHHHHHHHHHH--HT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
No 453
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.61 E-value=1e+02 Score=25.08 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecccCcccCCCCCCCCCCCc
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKHDHFRRCSNERSVATHPI 53 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 53 (167)
+.+++.+++++++.+.++++.-+.|.....-.+.+............
T Consensus 69 gFfvaflvslVL~~l~~f~l~r~~~l~~~~l~r~r~~~~~s~Le~~~ 115 (429)
T PF12297_consen 69 GFFVAFLVSLVLTWLCFFLLARTRCLQGRPLTRQRVQRHESKLEPSQ 115 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccchhhhccccccCCCCccc
No 454
>PF05950 Orthopox_A36R: Orthopoxvirus A36R protein; InterPro: IPR010274 This family consists of several Orthopoxvirus A36R proteins. The A36R protein is predicted to be a type Ib membrane protein [].
Probab=21.49 E-value=20 Score=23.89 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=0.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhhheecc
Q 031038 7 LVIIGICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 7 ~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
.+++.+++..++...++.+-+++.||++-+
T Consensus 1 m~lvp~i~vt~~a~~il~~yily~~rkki~ 30 (158)
T PF05950_consen 1 MMLVPLITVTVVAGTILMCYILYICRKKIR 30 (158)
T ss_pred CceeeEEEEeehhhHHHHHHHHHHHHHHHH
No 455
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.44 E-value=1.1e+02 Score=20.09 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhheecc
Q 031038 10 IGICVGLALGILIATLVFFGLRWYKKH 36 (167)
Q Consensus 10 i~ii~g~~~~v~~i~~~~~~~~~~r~~ 36 (167)
+.++.++++++.+.++++.+++|.++.
T Consensus 75 AlvLTaIVIg~Av~a~~lvl~~r~~~~ 101 (117)
T PRK12659 75 ALILTAIVIGFGVQAFAIVLIKRAYQV 101 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
No 456
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.34 E-value=78 Score=17.12 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCcCCcceeehhhHHHHHHHHHHH
Q 031038 1 MVHKSDLVIIGICVGLALGILIAT 24 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~ 24 (167)
|++++-.+++.++++++++-+.++
T Consensus 1 ~kk~rwiili~iv~~Cl~lyl~al 24 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLLLWAQVF 24 (47)
T ss_pred CceeeehHHHHHHHHHHHHHHHHH
No 457
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=21.14 E-value=1.5e+02 Score=18.14 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 031038 12 ICVGLALGILIATLVFFGLR 31 (167)
Q Consensus 12 ii~g~~~~v~~i~~~~~~~~ 31 (167)
.++|...+++++.++++++.
T Consensus 14 MvlGMg~VfvFL~lLI~~i~ 33 (82)
T PRK02919 14 MFLGMGFVLAFLFLLIFAIR 33 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 458
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=20.88 E-value=1.1e+02 Score=26.91 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCcCCcceeehhhHHHHHHHHHHHHHHHhhhheecccCcc
Q 031038 1 MVHKSDLVIIGICVGLALGILIATLVFFGLRWYKKHDHFR 40 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~ 40 (167)
|.+-+...+...+++.++.++++++++|++..+|.++.++
T Consensus 63 l~Ga~~~~~~~~i~~~i~~~~~~~~~lf~~~~~~~~~~~~ 102 (703)
T PRK12363 63 MDGAGVSDFSGYIAVFIGMILLSLSPLFAFRVRRFRRPRG 102 (703)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeccc
No 459
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.83 E-value=1.2e+02 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhheecccC
Q 031038 13 CVGLALGILIATLVFFGLRWYKKHDH 38 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~~r~~~~ 38 (167)
.++.++++++++.++..++++++++.
T Consensus 73 ~~~~~~gl~~l~~~~~~~~~~~~~~~ 98 (302)
T PF02628_consen 73 LLAGLVGLLILALAVWAWRKRRIRRR 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcc
No 460
>PHA02669 hypothetical protein; Provisional
Probab=20.81 E-value=1.2e+02 Score=21.38 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=0.0
Q ss_pred cceeehhhHHHHHHHHHHHHHHH
Q 031038 6 DLVIIGICVGLALGILIATLVFF 28 (167)
Q Consensus 6 ~~~ii~ii~g~~~~v~~i~~~~~ 28 (167)
..++|+||++++.+...++-+++
T Consensus 3 ~LVii~iIvavi~LTgAaiYlLi 25 (210)
T PHA02669 3 ALVLIGIIVAVIYLTGAAIYLLI 25 (210)
T ss_pred eeehhHHHHHHHHHHHHHHHHHH
No 461
>PHA03054 IMV membrane protein; Provisional
Probab=20.80 E-value=1.9e+02 Score=17.20 Aligned_cols=30 Identities=10% Similarity=-0.076 Sum_probs=0.0
Q ss_pred cCCcceeehhhHHHHHHHHHHHHHHHhhhh
Q 031038 3 HKSDLVIIGICVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 3 ~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~ 32 (167)
+.+.+...-+++-+++++++++++++.+.+
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHh
No 462
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=20.50 E-value=1.4e+02 Score=20.34 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 031038 13 CVGLALGILIATLVFFGLRW 32 (167)
Q Consensus 13 i~g~~~~v~~i~~~~~~~~~ 32 (167)
++|.+++++.+.++++.+.|
T Consensus 77 v~~~~~~~i~~s~~l~~~~r 96 (142)
T PF02936_consen 77 VFGGVFIFIGFSVLLFIWQR 96 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 463
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=20.49 E-value=1.7e+02 Score=17.25 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhheecccCcccCCC
Q 031038 16 LALGILIATLVFFGLRWYKKHDHFRRCSN 44 (167)
Q Consensus 16 ~~~~v~~i~~~~~~~~~~r~~~~~~~~~~ 44 (167)
...+++++.+.+++++..+++++..+...
T Consensus 9 ~L~~Llllp~~i~~~~~~~~~~~~~~fs~ 37 (77)
T PF07584_consen 9 YLWLLLLLPLPIIIHYFLRRRRRRVRFSS 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccCC
No 464
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=20.32 E-value=1.7e+02 Score=20.35 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHHHHHHHhhhheecccCcccC
Q 031038 9 IIGICVGLALGILIATLVFFGLRWYKKHDHFRRC 42 (167)
Q Consensus 9 ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~ 42 (167)
++++++.+++++++.+..+..|.-++......+.
T Consensus 3 ~la~i~avvvV~~~a~~g~~~~~~~~~~~p~~p~ 36 (161)
T PF10969_consen 3 ILALIAAVVVVVAAAVVGVGWWQLRRGSDPQDPE 36 (161)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhCCCCCCCCcE
No 465
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=20.31 E-value=1.6e+02 Score=20.49 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcCCcceeehhhHHHHHHHHHHHHHHHhh
Q 031038 2 VHKSDLVIIGICVGLALGILIATLVFFGL 30 (167)
Q Consensus 2 ~~~s~~~ii~ii~g~~~~v~~i~~~~~~~ 30 (167)
.+....++|.+++.++++++.++..++++
T Consensus 12 ~~~k~~~~I~liv~ivl~~~a~~~~~~~~ 40 (159)
T COG1580 12 KKKKKSLWILLIVLIVLLALAGAGYFFWF 40 (159)
T ss_pred cCCCceeehHHHHHHHHHHHHHHHHHHhh
No 466
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=20.26 E-value=1.3e+02 Score=21.97 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeccCCcccHHHHHHHHhh
Q 031038 139 PSGGVAAIKVLASDSHQGEKEFQTEVRA 166 (167)
Q Consensus 139 ~~g~~vavk~l~~~~~~~~~~F~~e~~~ 166 (167)
.++..+++|.+........++|..|++.
T Consensus 31 ~~~~~v~iK~~~~~~~~~~~~~~~e~~~ 58 (284)
T cd05081 31 NTGEVVAVKKLQHSTAEHLRDFEREIEI 58 (284)
T ss_pred CCCcEEEEEEeccCCHHHHHHHHHHHHH
No 467
>smart00811 Alpha_kinase Alpha-kinase family. This family is a novel family of eukaryotic protein kinase catalytic domains, which have no detectable similarity to conventional kinases. The family contains myosin heavy chain kinases and Elongation Factor-2 kinase and a bifunctional ion channel. This family is known as the alpha-kinase family. The structure of the kinase domain revealed unexpected similarity to eukaryotic protein kinases in the catalytic core as well as to metabolic enzymes with ATP-grasp domains.
Probab=20.23 E-value=2.8e+02 Score=19.96 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccccccEEEEEc----CCCcEEEEEEeccCCcccH-HHHHHHHhhC
Q 031038 126 GQGAFGPVYKATM----PSGGVAAIKVLASDSHQGE-KEFQTEVRAH 167 (167)
Q Consensus 126 g~g~~g~vy~g~l----~~g~~vavk~l~~~~~~~~-~~F~~e~~~~ 167 (167)
++|++-.+|++.. ..+...++|.......... +++..+++++
T Consensus 20 a~G~~R~a~~~~~~~~~~~~~~~V~K~~~~~~~~~~~~~yf~d~~~q 66 (198)
T smart00811 20 AKGAMRVAFRVKDLSEFGSGTECVAKYFKKEYKNTVEDRYFEDVEMQ 66 (198)
T ss_pred CCCceeeeEEEEEeccCCCCCEEEEEEeccccCCchHHHHHHHHHHH
No 468
>PHA03290 envelope glycoprotein I; Provisional
Probab=20.16 E-value=1.6e+02 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCcCCcceeehhhHHHHHHHHHHHHHHHhhhheecccCcccC
Q 031038 1 MVHKSDLVIIGICVGLALGILIATLVFFGLRWYKKHDHFRRC 42 (167)
Q Consensus 1 ~~~~s~~~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~~~~~~ 42 (167)
+.......+|.|-+.+++.+++++++.+..--.||+...+++
T Consensus 266 ~~~~~~~~~ivipi~~~llilla~i~~i~~~~~Rr~s~~~r~ 307 (357)
T PHA03290 266 LEDPADNFLIAIPITASLLIILAIIIVITIGIKRRRSIEKHK 307 (357)
T ss_pred ccCCcceEEEEehHHHHHHHHHHHHHHHHhhhhhhhhcccCc
No 469
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.15 E-value=1.3e+02 Score=24.97 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhheeccc
Q 031038 8 VIIGICVGLALGILIATLVFFGLRWYKKHD 37 (167)
Q Consensus 8 ~ii~ii~g~~~~v~~i~~~~~~~~~~r~~~ 37 (167)
+...-+++.+++++++++++++..++|+.+
T Consensus 1 ~l~~~L~~~i~lvi~~~l~~~~~~~~r~~~ 30 (486)
T KOG0684|consen 1 LLATSLAGPILLVIALLLLLFLLLQRRTSR 30 (486)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhcccCC
Done!